1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 24113e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 242a05e1a72SSatish Balay #include <inttypes.h> 24337354ed4SSatish Balay # if !defined(PRId64) 24437354ed4SSatish Balay # define PRId64 "ld" 24537354ed4SSatish Balay # endif 246a05e1a72SSatish Balay #endif 247fab38c73SJed Brown 24899a4b90dSDave May typedef short PetscShort; 24999a4b90dSDave May typedef char PetscChar; 25099a4b90dSDave May typedef float PetscFloat; 25199a4b90dSDave May 252d382aafbSBarry Smith /*MC 253d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2543b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 255d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 256d382aafbSBarry Smith 257390e1bf2SBarry Smith 258390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of 259390e1bf2SBarry Smith the size of PetscInt 260390e1bf2SBarry Smith 261d382aafbSBarry Smith Level: intermediate 262d382aafbSBarry Smith 263d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 264d382aafbSBarry Smith M*/ 26537354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 266bafee8b4SSatish Balay typedef int64_t PetscInt64; 267bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 268a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 269fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 270bafee8b4SSatish Balay typedef long long PetscInt64; 271bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 272a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 273f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 274bafee8b4SSatish Balay typedef __int64 PetscInt64; 275bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 276a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 277236ed0a3SSatish Balay #else 278bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 279236ed0a3SSatish Balay #endif 280d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 281bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 282bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 283a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 284d382aafbSBarry Smith #else 285d382aafbSBarry Smith typedef int PetscInt; 286d382aafbSBarry Smith #define MPIU_INT MPI_INT 287a05e1a72SSatish Balay #define PetscInt_FMT "d" 288d382aafbSBarry Smith #endif 289d382aafbSBarry Smith 290702bc34aSSatish Balay /*MC 291702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 292702bc34aSSatish Balay 293702bc34aSSatish Balay Level: intermediate 294702bc34aSSatish Balay 295702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 296702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 297702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 298702bc34aSSatish Balay 299c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3002981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 301702bc34aSSatish Balay 3022981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 303702bc34aSSatish Balay if you run ./configure with the option 304*149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3052981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3062981ebdbSBarry Smith 307390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 308390e1bf2SBarry Smith --known-64-bit-blas-indices 309390e1bf2SBarry Smith 310390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 311390e1bf2SBarry Smith will build a 64 bit integer version 3122981ebdbSBarry Smith 3132981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 314702bc34aSSatish Balay 315702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 316702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 317702bc34aSSatish Balay 3181cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 319702bc34aSSatish Balay 320702bc34aSSatish Balay M*/ 321702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 322bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 323702bc34aSSatish Balay #else 324702bc34aSSatish Balay typedef int PetscBLASInt; 325702bc34aSSatish Balay #endif 326702bc34aSSatish Balay 327503cfb0cSBarry Smith /* 328503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 329503cfb0cSBarry Smith */ 330d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 331adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 332d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 333adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 334d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 335adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 336d382aafbSBarry Smith #else 337d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 338d382aafbSBarry Smith #endif 339d382aafbSBarry Smith 340d382aafbSBarry Smith /* 341d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 342d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 343d382aafbSBarry Smith */ 344014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 345d382aafbSBarry Smith 346d382aafbSBarry Smith /* 347d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 348d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 349d382aafbSBarry Smith */ 350014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 351d382aafbSBarry Smith 352d382aafbSBarry Smith /*MC 353d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 354d382aafbSBarry Smith 355d382aafbSBarry Smith Synopsis: 356aaa7dc30SBarry Smith #include <petscsys.h> 357ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 358d382aafbSBarry Smith 359eca87e8dSBarry Smith Not Collective 360eca87e8dSBarry Smith 361d382aafbSBarry Smith Input Parameters: 362d382aafbSBarry Smith . cond - condition or expression 363d382aafbSBarry Smith 364d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 365d382aafbSBarry Smith branch is unlikely. 366d382aafbSBarry Smith 367d382aafbSBarry Smith Level: advanced 368d382aafbSBarry Smith 369d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 370d382aafbSBarry Smith M*/ 371d382aafbSBarry Smith 372d382aafbSBarry Smith /*MC 373d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 374d382aafbSBarry Smith 375d382aafbSBarry Smith Synopsis: 376aaa7dc30SBarry Smith #include <petscsys.h> 377ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 378d382aafbSBarry Smith 379eca87e8dSBarry Smith Not Collective 380eca87e8dSBarry Smith 381d382aafbSBarry Smith Input Parameters: 382d382aafbSBarry Smith . cond - condition or expression 383d382aafbSBarry Smith 384d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 385d382aafbSBarry Smith branch is likely. 386d382aafbSBarry Smith 387d382aafbSBarry Smith Level: advanced 388d382aafbSBarry Smith 389d382aafbSBarry Smith .seealso: PetscUnlikely() 390d382aafbSBarry Smith M*/ 391d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 392d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 393d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 394d382aafbSBarry Smith #else 395cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 396cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 397d382aafbSBarry Smith #endif 398d382aafbSBarry Smith 399d382aafbSBarry Smith /* 400d382aafbSBarry Smith Declare extern C stuff after including external header files 401d382aafbSBarry Smith */ 402d382aafbSBarry Smith 403d382aafbSBarry Smith 404d382aafbSBarry Smith /* 405d382aafbSBarry Smith Basic PETSc constants 406d382aafbSBarry Smith */ 407d382aafbSBarry Smith 408d382aafbSBarry Smith /*E 409ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 410d382aafbSBarry Smith 411d382aafbSBarry Smith Level: beginner 412d382aafbSBarry Smith 413ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 41434e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41534e82e7dSBarry Smith 4161cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 417d382aafbSBarry Smith E*/ 418ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4196a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4205a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 42170b3c8c7SBarry Smith 4228b49ba18SBarry Smith /* 423390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4248b49ba18SBarry Smith */ 4258b49ba18SBarry Smith #include <petscmath.h> 4268b49ba18SBarry Smith 42770b3c8c7SBarry Smith /*E 42870b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 42970b3c8c7SBarry Smith 43070b3c8c7SBarry Smith Level: beginner 43170b3c8c7SBarry Smith 43270b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 43370b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 43470b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 43570b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43670b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 43770b3c8c7SBarry Smith 43870b3c8c7SBarry Smith E*/ 43970b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4406a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 441d382aafbSBarry Smith 442d382aafbSBarry Smith /*MC 443ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 444d382aafbSBarry Smith 445d382aafbSBarry Smith Level: beginner 446d382aafbSBarry Smith 447d382aafbSBarry Smith Note: Zero integer 448d382aafbSBarry Smith 449ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 450d382aafbSBarry Smith M*/ 451d382aafbSBarry Smith 452d382aafbSBarry Smith /*MC 453ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 454d382aafbSBarry Smith 455d382aafbSBarry Smith Level: beginner 456d382aafbSBarry Smith 457d382aafbSBarry Smith Note: Nonzero integer 458d382aafbSBarry Smith 459ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 460d382aafbSBarry Smith M*/ 461d382aafbSBarry Smith 462d382aafbSBarry Smith /*MC 4630298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 464d382aafbSBarry Smith 465d382aafbSBarry Smith Level: beginner 466d382aafbSBarry Smith 467d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 468d382aafbSBarry Smith some default 469d382aafbSBarry Smith 470d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 471d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 472d382aafbSBarry Smith 473d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 474d382aafbSBarry Smith 475d382aafbSBarry Smith M*/ 4760298fd71SBarry Smith #define PETSC_IGNORE NULL 477d382aafbSBarry Smith 478c528d872SBarry Smith /* This is deprecated */ 479c528d872SBarry Smith #define PETSC_NULL NULL 480c528d872SBarry Smith 481d382aafbSBarry Smith /*MC 482557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 483557d4da8SBarry Smith where you wish PETSc to use the default. 484557d4da8SBarry Smith 485557d4da8SBarry Smith Level: beginner 486557d4da8SBarry Smith 487557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 488557d4da8SBarry Smith 489557d4da8SBarry Smith M*/ 490557d4da8SBarry Smith #define PETSC_DECIDE -1 491557d4da8SBarry Smith 492557d4da8SBarry Smith /*MC 493d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 494d382aafbSBarry Smith where you wish PETSc to compute the required value. 495d382aafbSBarry Smith 496d382aafbSBarry Smith Level: beginner 497d382aafbSBarry Smith 498557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 499557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 500557d4da8SBarry Smith 5010298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 502d382aafbSBarry Smith 503d382aafbSBarry Smith M*/ 504d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 505d382aafbSBarry Smith 506d382aafbSBarry Smith /*MC 507557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 508557d4da8SBarry Smith where you wish PETSc to use the default. 509557d4da8SBarry Smith 510557d4da8SBarry Smith Level: beginner 511557d4da8SBarry Smith 5122d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 513557d4da8SBarry Smith 5140298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 515557d4da8SBarry Smith 516557d4da8SBarry Smith M*/ 517557d4da8SBarry Smith #define PETSC_DEFAULT -2 518557d4da8SBarry Smith 519557d4da8SBarry Smith /*MC 520d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 521d382aafbSBarry Smith all the processs that PETSc knows about. 522d382aafbSBarry Smith 523d382aafbSBarry Smith Level: beginner 524d382aafbSBarry Smith 525d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 526d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 527d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 528a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 529a990b902SBarry Smith 530a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 531a990b902SBarry Smith is called because it may not have a valid value yet. 532d382aafbSBarry Smith 533d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 534d382aafbSBarry Smith 535d382aafbSBarry Smith M*/ 536014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 537d382aafbSBarry Smith 538d382aafbSBarry Smith /*MC 539503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 540d382aafbSBarry Smith 541d382aafbSBarry Smith Level: beginner 542d382aafbSBarry Smith 543a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 544a990b902SBarry Smith 545d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 546d382aafbSBarry Smith 547d382aafbSBarry Smith M*/ 548d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 549d382aafbSBarry Smith 550d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 551014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 552014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 553014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5544cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 55582f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 556d382aafbSBarry Smith 557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 558014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 560d382aafbSBarry Smith 561d382aafbSBarry Smith /*MC 56295dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 563d382aafbSBarry Smith 564eca87e8dSBarry Smith Synopsis: 565aaa7dc30SBarry Smith #include <petscsys.h> 566eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 567eca87e8dSBarry Smith 568eca87e8dSBarry Smith Not Collective 569eca87e8dSBarry Smith 570d382aafbSBarry Smith Input Parameter: 571d382aafbSBarry Smith . m - number of bytes to allocate 572d382aafbSBarry Smith 573d382aafbSBarry Smith Output Parameter: 574d382aafbSBarry Smith . result - memory allocated 575d382aafbSBarry Smith 576d382aafbSBarry Smith Level: beginner 577d382aafbSBarry Smith 57849d7da52SJed Brown Notes: 57949d7da52SJed Brown Memory is always allocated at least double aligned 580d382aafbSBarry Smith 58149d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 582d382aafbSBarry Smith 583d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 584d382aafbSBarry Smith 585d382aafbSBarry Smith Concepts: memory allocation 586d382aafbSBarry Smith 587d382aafbSBarry Smith M*/ 58849d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 589d382aafbSBarry Smith 590d382aafbSBarry Smith /*MC 5913221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 5923221ece2SMatthew G. Knepley 5933221ece2SMatthew G. Knepley Synopsis: 5943221ece2SMatthew G. Knepley #include <petscsys.h> 5953221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 5963221ece2SMatthew G. Knepley 5973221ece2SMatthew G. Knepley Not Collective 5983221ece2SMatthew G. Knepley 5993221ece2SMatthew G. Knepley Input Parameters: 6003221ece2SMatthew G. Knepley + m - number of bytes to allocate 6013221ece2SMatthew G. Knepley - result - initial memory allocated 6023221ece2SMatthew G. Knepley 6033221ece2SMatthew G. Knepley Output Parameter: 6043221ece2SMatthew G. Knepley . result - new memory allocated 6053221ece2SMatthew G. Knepley 6063221ece2SMatthew G. Knepley Level: developer 6073221ece2SMatthew G. Knepley 6083221ece2SMatthew G. Knepley Notes: 6093221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6103221ece2SMatthew G. Knepley 6113221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6123221ece2SMatthew G. Knepley 6133221ece2SMatthew G. Knepley Concepts: memory allocation 6143221ece2SMatthew G. Knepley 6153221ece2SMatthew G. Knepley M*/ 6163221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6173221ece2SMatthew G. Knepley 6183221ece2SMatthew G. Knepley /*MC 619503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 620d382aafbSBarry Smith 621d382aafbSBarry Smith Synopsis: 622aaa7dc30SBarry Smith #include <petscsys.h> 623d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 624d382aafbSBarry Smith 625eca87e8dSBarry Smith Not Collective 626eca87e8dSBarry Smith 627eca87e8dSBarry Smith Input Parameters: 628eca87e8dSBarry Smith . addr - address to align (any pointer type) 629eca87e8dSBarry Smith 630d382aafbSBarry Smith Level: developer 631d382aafbSBarry Smith 632d382aafbSBarry Smith .seealso: PetscMallocAlign() 633d382aafbSBarry Smith 634d382aafbSBarry Smith Concepts: memory allocation 635d382aafbSBarry Smith M*/ 636d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 637d382aafbSBarry Smith 638d382aafbSBarry Smith /*MC 639785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 640d382aafbSBarry Smith 641eca87e8dSBarry Smith Synopsis: 642aaa7dc30SBarry Smith #include <petscsys.h> 643785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 644785e854fSJed Brown 645785e854fSJed Brown Not Collective 646785e854fSJed Brown 647785e854fSJed Brown Input Parameter: 648390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 649785e854fSJed Brown 650785e854fSJed Brown Output Parameter: 651785e854fSJed Brown . r1 - memory allocated in first chunk 652785e854fSJed Brown 653390e1bf2SBarry Smith Note: This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 654390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 655390e1bf2SBarry Smith $ PetscInt *id; 656390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 657390e1bf2SBarry Smith not 658390e1bf2SBarry Smith $ PetscInt *id; 659390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 660390e1bf2SBarry Smith 661390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 662390e1bf2SBarry Smith 663390e1bf2SBarry Smith Level: beginner 664785e854fSJed Brown 6651795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 666785e854fSJed Brown 667785e854fSJed Brown Concepts: memory allocation 668785e854fSJed Brown 669785e854fSJed Brown M*/ 670f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 671785e854fSJed Brown 672785e854fSJed Brown /*MC 6731795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6741795a4d1SJed Brown 6751795a4d1SJed Brown Synopsis: 676aaa7dc30SBarry Smith #include <petscsys.h> 6771795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6781795a4d1SJed Brown 6791795a4d1SJed Brown Not Collective 6801795a4d1SJed Brown 6811795a4d1SJed Brown Input Parameter: 6821795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6831795a4d1SJed Brown 6841795a4d1SJed Brown Output Parameter: 6851795a4d1SJed Brown . r1 - memory allocated in first chunk 6861795a4d1SJed Brown 687390e1bf2SBarry Smith Notes: see PetsMalloc1() for more details on usage. 688390e1bf2SBarry Smith 689390e1bf2SBarry Smith Level: beginner 6901795a4d1SJed Brown 6911795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6921795a4d1SJed Brown 6931795a4d1SJed Brown Concepts: memory allocation 6941795a4d1SJed Brown 6951795a4d1SJed Brown M*/ 6961795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6971795a4d1SJed Brown 6981795a4d1SJed Brown /*MC 699dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 700d382aafbSBarry Smith 701eca87e8dSBarry Smith Synopsis: 702aaa7dc30SBarry Smith #include <petscsys.h> 703dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 704eca87e8dSBarry Smith 705eca87e8dSBarry Smith Not Collective 706eca87e8dSBarry Smith 707d382aafbSBarry Smith Input Parameter: 708d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 709dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 710d382aafbSBarry Smith 711d382aafbSBarry Smith Output Parameter: 712d382aafbSBarry Smith + r1 - memory allocated in first chunk 713d382aafbSBarry Smith - r2 - memory allocated in second chunk 714d382aafbSBarry Smith 715d382aafbSBarry Smith Level: developer 716d382aafbSBarry Smith 7171795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 718d382aafbSBarry Smith 719d382aafbSBarry Smith Concepts: memory allocation 720d382aafbSBarry Smith 721d382aafbSBarry Smith M*/ 72220a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7231d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 724d382aafbSBarry Smith #else 725ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 726ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 7273589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 728d382aafbSBarry Smith #endif 729d382aafbSBarry Smith 730d382aafbSBarry Smith /*MC 7311795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 732d382aafbSBarry Smith 733eca87e8dSBarry Smith Synopsis: 734aaa7dc30SBarry Smith #include <petscsys.h> 7351795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 736eca87e8dSBarry Smith 737eca87e8dSBarry Smith Not Collective 738eca87e8dSBarry Smith 739d382aafbSBarry Smith Input Parameter: 740d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7411795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7421795a4d1SJed Brown 7431795a4d1SJed Brown Output Parameter: 7441795a4d1SJed Brown + r1 - memory allocated in first chunk 7451795a4d1SJed Brown - r2 - memory allocated in second chunk 7461795a4d1SJed Brown 7471795a4d1SJed Brown Level: developer 7481795a4d1SJed Brown 7491795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7501795a4d1SJed Brown 7511795a4d1SJed Brown Concepts: memory allocation 7521795a4d1SJed Brown M*/ 7531795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7541795a4d1SJed Brown 7551795a4d1SJed Brown /*MC 756dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 757d382aafbSBarry Smith 758d382aafbSBarry Smith Synopsis: 759aaa7dc30SBarry Smith #include <petscsys.h> 760dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 761d382aafbSBarry Smith 762d382aafbSBarry Smith Not Collective 763d382aafbSBarry Smith 764d382aafbSBarry Smith Input Parameter: 765d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 766d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 767dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 768d382aafbSBarry Smith 769d382aafbSBarry Smith Output Parameter: 770d382aafbSBarry Smith + r1 - memory allocated in first chunk 771d382aafbSBarry Smith . r2 - memory allocated in second chunk 772d382aafbSBarry Smith - r3 - memory allocated in third chunk 773d382aafbSBarry Smith 774d382aafbSBarry Smith Level: developer 775d382aafbSBarry Smith 7761795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 777d382aafbSBarry Smith 778d382aafbSBarry Smith Concepts: memory allocation 779d382aafbSBarry Smith 780d382aafbSBarry Smith M*/ 78120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7821d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 783d382aafbSBarry Smith #else 784ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 785278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7863589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 787d382aafbSBarry Smith #endif 788d382aafbSBarry Smith 789d382aafbSBarry Smith /*MC 7901795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 791d382aafbSBarry Smith 792eca87e8dSBarry Smith Synopsis: 793aaa7dc30SBarry Smith #include <petscsys.h> 7941795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 795eca87e8dSBarry Smith 796eca87e8dSBarry Smith Not Collective 797eca87e8dSBarry Smith 798d382aafbSBarry Smith Input Parameter: 799d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 800d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8011795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8021795a4d1SJed Brown 8031795a4d1SJed Brown Output Parameter: 8041795a4d1SJed Brown + r1 - memory allocated in first chunk 8051795a4d1SJed Brown . r2 - memory allocated in second chunk 8061795a4d1SJed Brown - r3 - memory allocated in third chunk 8071795a4d1SJed Brown 8081795a4d1SJed Brown Level: developer 8091795a4d1SJed Brown 8101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8111795a4d1SJed Brown 8121795a4d1SJed Brown Concepts: memory allocation 8131795a4d1SJed Brown M*/ 8141795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 8151795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 8161795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 8171795a4d1SJed Brown 8181795a4d1SJed Brown /*MC 819dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 820d382aafbSBarry Smith 821d382aafbSBarry Smith Synopsis: 822aaa7dc30SBarry Smith #include <petscsys.h> 823dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 824d382aafbSBarry Smith 825d382aafbSBarry Smith Not Collective 826d382aafbSBarry Smith 827d382aafbSBarry Smith Input Parameter: 828d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 829d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 830d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 831dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 832d382aafbSBarry Smith 833d382aafbSBarry Smith Output Parameter: 834d382aafbSBarry Smith + r1 - memory allocated in first chunk 835d382aafbSBarry Smith . r2 - memory allocated in second chunk 836d382aafbSBarry Smith . r3 - memory allocated in third chunk 837d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 838d382aafbSBarry Smith 839d382aafbSBarry Smith Level: developer 840d382aafbSBarry Smith 8411795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 842d382aafbSBarry Smith 843d382aafbSBarry Smith Concepts: memory allocation 844d382aafbSBarry Smith 845d382aafbSBarry Smith M*/ 84620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8471d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 848d382aafbSBarry Smith #else 849dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 850ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 851278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8523589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 853d382aafbSBarry Smith #endif 854d382aafbSBarry Smith 855d382aafbSBarry Smith /*MC 8561795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 857d382aafbSBarry Smith 858eca87e8dSBarry Smith Synopsis: 859aaa7dc30SBarry Smith #include <petscsys.h> 8601795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 861eca87e8dSBarry Smith 862eca87e8dSBarry Smith Not Collective 863eca87e8dSBarry Smith 864d382aafbSBarry Smith Input Parameter: 865d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 866d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 867d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8681795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8691795a4d1SJed Brown 8701795a4d1SJed Brown Output Parameter: 8711795a4d1SJed Brown + r1 - memory allocated in first chunk 8721795a4d1SJed Brown . r2 - memory allocated in second chunk 8731795a4d1SJed Brown . r3 - memory allocated in third chunk 8741795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8751795a4d1SJed Brown 8761795a4d1SJed Brown Level: developer 8771795a4d1SJed Brown 8781795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8791795a4d1SJed Brown 8801795a4d1SJed Brown Concepts: memory allocation 8811795a4d1SJed Brown 8821795a4d1SJed Brown M*/ 8831795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8841795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8851795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8861795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8871795a4d1SJed Brown 8881795a4d1SJed Brown /*MC 889dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 890d382aafbSBarry Smith 891d382aafbSBarry Smith Synopsis: 892aaa7dc30SBarry Smith #include <petscsys.h> 893dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 894d382aafbSBarry Smith 895d382aafbSBarry Smith Not Collective 896d382aafbSBarry Smith 897d382aafbSBarry Smith Input Parameter: 898d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 899d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 900d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 901d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 902dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 903d382aafbSBarry Smith 904d382aafbSBarry Smith Output Parameter: 905d382aafbSBarry Smith + r1 - memory allocated in first chunk 906d382aafbSBarry Smith . r2 - memory allocated in second chunk 907d382aafbSBarry Smith . r3 - memory allocated in third chunk 908d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 909d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 910d382aafbSBarry Smith 911d382aafbSBarry Smith Level: developer 912d382aafbSBarry Smith 9131795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 914d382aafbSBarry Smith 915d382aafbSBarry Smith Concepts: memory allocation 916d382aafbSBarry Smith 917d382aafbSBarry Smith M*/ 91820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9191d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 920d382aafbSBarry Smith #else 921dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 922ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 923278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 9243589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 925d382aafbSBarry Smith #endif 926d382aafbSBarry Smith 927d382aafbSBarry Smith /*MC 9281795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 929d382aafbSBarry Smith 930eca87e8dSBarry Smith Synopsis: 931aaa7dc30SBarry Smith #include <petscsys.h> 9321795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 933eca87e8dSBarry Smith 934eca87e8dSBarry Smith Not Collective 935eca87e8dSBarry Smith 936d382aafbSBarry Smith Input Parameter: 937d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 938d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 939d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 940d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9411795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9421795a4d1SJed Brown 9431795a4d1SJed Brown Output Parameter: 9441795a4d1SJed Brown + r1 - memory allocated in first chunk 9451795a4d1SJed Brown . r2 - memory allocated in second chunk 9461795a4d1SJed Brown . r3 - memory allocated in third chunk 9471795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9481795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9491795a4d1SJed Brown 9501795a4d1SJed Brown Level: developer 9511795a4d1SJed Brown 9521795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9531795a4d1SJed Brown 9541795a4d1SJed Brown Concepts: memory allocation 9551795a4d1SJed Brown 9561795a4d1SJed Brown M*/ 9571795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9581795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9591795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9601795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 961d382aafbSBarry Smith 962d382aafbSBarry Smith /*MC 963dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 964d382aafbSBarry Smith 965d382aafbSBarry Smith Synopsis: 966aaa7dc30SBarry Smith #include <petscsys.h> 967dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 968d382aafbSBarry Smith 969d382aafbSBarry Smith Not Collective 970d382aafbSBarry Smith 971d382aafbSBarry Smith Input Parameter: 972d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 973d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 974d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 975d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 976d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 977dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 978d382aafbSBarry Smith 979d382aafbSBarry Smith Output Parameter: 980d382aafbSBarry Smith + r1 - memory allocated in first chunk 981d382aafbSBarry Smith . r2 - memory allocated in second chunk 982d382aafbSBarry Smith . r3 - memory allocated in third chunk 983d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 984d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 985d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 986d382aafbSBarry Smith 987d382aafbSBarry Smith Level: developer 988d382aafbSBarry Smith 9891795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 990d382aafbSBarry Smith 991d382aafbSBarry Smith Concepts: memory allocation 992d382aafbSBarry Smith 993d382aafbSBarry Smith M*/ 99420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9951d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 996d382aafbSBarry Smith #else 997dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 998ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 999278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 10003589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 1001d382aafbSBarry Smith #endif 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith /*MC 10041795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1005d382aafbSBarry Smith 1006eca87e8dSBarry Smith Synopsis: 1007aaa7dc30SBarry Smith #include <petscsys.h> 10081795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1009eca87e8dSBarry Smith 1010eca87e8dSBarry Smith Not Collective 1011eca87e8dSBarry Smith 1012d382aafbSBarry Smith Input Parameter: 1013d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1014d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1015d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1016d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1017d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10181795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10191795a4d1SJed Brown 10201795a4d1SJed Brown Output Parameter: 10211795a4d1SJed Brown + r1 - memory allocated in first chunk 10221795a4d1SJed Brown . r2 - memory allocated in second chunk 10231795a4d1SJed Brown . r3 - memory allocated in third chunk 10241795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10251795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10261795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10271795a4d1SJed Brown 10281795a4d1SJed Brown Level: developer 10291795a4d1SJed Brown 10301795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10311795a4d1SJed Brown 10321795a4d1SJed Brown Concepts: memory allocation 10331795a4d1SJed Brown M*/ 10341795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10351795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10361795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10371795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10381795a4d1SJed Brown 10391795a4d1SJed Brown /*MC 1040dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith Synopsis: 1043aaa7dc30SBarry Smith #include <petscsys.h> 1044dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith Not Collective 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith Input Parameter: 1049d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1050d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1051d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1052d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1053d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1054d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1055dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1056d382aafbSBarry Smith 1057d382aafbSBarry Smith Output Parameter: 1058d382aafbSBarry Smith + r1 - memory allocated in first chunk 1059d382aafbSBarry Smith . r2 - memory allocated in second chunk 1060d382aafbSBarry Smith . r3 - memory allocated in third chunk 1061d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1062d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1063d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1064eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1065d382aafbSBarry Smith 1066d382aafbSBarry Smith Level: developer 1067d382aafbSBarry Smith 10681795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1069d382aafbSBarry Smith 1070d382aafbSBarry Smith Concepts: memory allocation 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith M*/ 107320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10741d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1075d382aafbSBarry Smith #else 1076dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1077ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1078278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10793589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1080d382aafbSBarry Smith #endif 1081d382aafbSBarry Smith 1082d382aafbSBarry Smith /*MC 10831795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10841795a4d1SJed Brown 10851795a4d1SJed Brown Synopsis: 1086aaa7dc30SBarry Smith #include <petscsys.h> 10871795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10881795a4d1SJed Brown 10891795a4d1SJed Brown Not Collective 10901795a4d1SJed Brown 10911795a4d1SJed Brown Input Parameter: 10921795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10931795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10941795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10951795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10961795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10971795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10981795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10991795a4d1SJed Brown 11001795a4d1SJed Brown Output Parameter: 11011795a4d1SJed Brown + r1 - memory allocated in first chunk 11021795a4d1SJed Brown . r2 - memory allocated in second chunk 11031795a4d1SJed Brown . r3 - memory allocated in third chunk 11041795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11051795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11061795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11071795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11081795a4d1SJed Brown 11091795a4d1SJed Brown Level: developer 11101795a4d1SJed Brown 11111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11121795a4d1SJed Brown 11131795a4d1SJed Brown Concepts: memory allocation 11141795a4d1SJed Brown M*/ 11151795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11167ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11171795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 11181795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 11197ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 11201795a4d1SJed Brown 11211795a4d1SJed Brown /*MC 1122503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1123d382aafbSBarry Smith 1124eca87e8dSBarry Smith Synopsis: 1125aaa7dc30SBarry Smith #include <petscsys.h> 1126b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1127eca87e8dSBarry Smith 1128eca87e8dSBarry Smith Not Collective 1129eca87e8dSBarry Smith 1130d382aafbSBarry Smith Output Parameter: 1131b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith Level: beginner 1134d382aafbSBarry Smith 1135390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith Concepts: memory allocation 1138d382aafbSBarry Smith 1139d382aafbSBarry Smith M*/ 1140b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1141ad0619ddSBarry Smith 1142ad0619ddSBarry Smith /*MC 1143b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1144ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1145ad0619ddSBarry Smith 1146ad0619ddSBarry Smith Synopsis: 1147aaa7dc30SBarry Smith #include <petscsys.h> 1148b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1149ad0619ddSBarry Smith 1150ad0619ddSBarry Smith Not Collective 1151ad0619ddSBarry Smith 1152ad0619ddSBarry Smith Input Parameter: 1153b00a9115SJed Brown . obj - object memory is logged to 1154ad0619ddSBarry Smith 1155ad0619ddSBarry Smith Output Parameter: 1156b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1157ad0619ddSBarry Smith 1158ad0619ddSBarry Smith Level: developer 1159ad0619ddSBarry Smith 1160390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1161ad0619ddSBarry Smith 1162ad0619ddSBarry Smith Concepts: memory allocation 1163ad0619ddSBarry Smith 1164ad0619ddSBarry Smith M*/ 1165d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1166d382aafbSBarry Smith 1167d382aafbSBarry Smith /*MC 1168d382aafbSBarry Smith PetscFree - Frees memory 1169d382aafbSBarry Smith 1170eca87e8dSBarry Smith Synopsis: 1171aaa7dc30SBarry Smith #include <petscsys.h> 1172eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1173eca87e8dSBarry Smith 1174eca87e8dSBarry Smith Not Collective 1175eca87e8dSBarry Smith 1176d382aafbSBarry Smith Input Parameter: 1177390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1178d382aafbSBarry Smith 1179d382aafbSBarry Smith Level: beginner 1180d382aafbSBarry Smith 118149d7da52SJed Brown Notes: 1182390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1183390e1bf2SBarry Smith 118449d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1185d382aafbSBarry Smith 1186390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith Concepts: memory allocation 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith M*/ 119149d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith /*MC 1194d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1195d382aafbSBarry Smith 1196eca87e8dSBarry Smith Synopsis: 1197aaa7dc30SBarry Smith #include <petscsys.h> 1198eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1199eca87e8dSBarry Smith 1200eca87e8dSBarry Smith Not Collective 1201eca87e8dSBarry Smith 1202d382aafbSBarry Smith Input Parameter: 1203d382aafbSBarry Smith + memory1 - memory to free 1204d382aafbSBarry Smith - memory2 - 2nd memory to free 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith Level: developer 1207d382aafbSBarry Smith 1208d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1209d382aafbSBarry Smith 1210d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith Concepts: memory allocation 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith M*/ 1215b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1216d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1217d382aafbSBarry Smith #else 1218e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1219d382aafbSBarry Smith #endif 1220d382aafbSBarry Smith 1221d382aafbSBarry Smith /*MC 1222d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1223d382aafbSBarry Smith 1224eca87e8dSBarry Smith Synopsis: 1225aaa7dc30SBarry Smith #include <petscsys.h> 1226eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1227eca87e8dSBarry Smith 1228eca87e8dSBarry Smith Not Collective 1229eca87e8dSBarry Smith 1230d382aafbSBarry Smith Input Parameter: 1231d382aafbSBarry Smith + memory1 - memory to free 1232d382aafbSBarry Smith . memory2 - 2nd memory to free 1233d382aafbSBarry Smith - memory3 - 3rd memory to free 1234d382aafbSBarry Smith 1235d382aafbSBarry Smith Level: developer 1236d382aafbSBarry Smith 1237d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1238d382aafbSBarry Smith 1239d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1240d382aafbSBarry Smith 1241d382aafbSBarry Smith Concepts: memory allocation 1242d382aafbSBarry Smith 1243d382aafbSBarry Smith M*/ 1244b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1245d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1246d382aafbSBarry Smith #else 1247e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1248d382aafbSBarry Smith #endif 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith /*MC 1251d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1252d382aafbSBarry Smith 1253eca87e8dSBarry Smith Synopsis: 1254aaa7dc30SBarry Smith #include <petscsys.h> 1255eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1256eca87e8dSBarry Smith 1257eca87e8dSBarry Smith Not Collective 1258eca87e8dSBarry Smith 1259d382aafbSBarry Smith Input Parameter: 1260d382aafbSBarry Smith + m1 - memory to free 1261d382aafbSBarry Smith . m2 - 2nd memory to free 1262d382aafbSBarry Smith . m3 - 3rd memory to free 1263d382aafbSBarry Smith - m4 - 4th memory to free 1264d382aafbSBarry Smith 1265d382aafbSBarry Smith Level: developer 1266d382aafbSBarry Smith 1267d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1268d382aafbSBarry Smith 1269d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1270d382aafbSBarry Smith 1271d382aafbSBarry Smith Concepts: memory allocation 1272d382aafbSBarry Smith 1273d382aafbSBarry Smith M*/ 1274b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1275d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1276d382aafbSBarry Smith #else 1277e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1278d382aafbSBarry Smith #endif 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith /*MC 1281d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1282d382aafbSBarry Smith 1283eca87e8dSBarry Smith Synopsis: 1284aaa7dc30SBarry Smith #include <petscsys.h> 1285eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1286eca87e8dSBarry Smith 1287eca87e8dSBarry Smith Not Collective 1288eca87e8dSBarry Smith 1289d382aafbSBarry Smith Input Parameter: 1290d382aafbSBarry Smith + m1 - memory to free 1291d382aafbSBarry Smith . m2 - 2nd memory to free 1292d382aafbSBarry Smith . m3 - 3rd memory to free 1293d382aafbSBarry Smith . m4 - 4th memory to free 1294d382aafbSBarry Smith - m5 - 5th memory to free 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith Level: developer 1297d382aafbSBarry Smith 1298d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1299d382aafbSBarry Smith 1300d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1301d382aafbSBarry Smith 1302d382aafbSBarry Smith Concepts: memory allocation 1303d382aafbSBarry Smith 1304d382aafbSBarry Smith M*/ 1305b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1306d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1307d382aafbSBarry Smith #else 1308e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1309e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1310d382aafbSBarry Smith #endif 1311d382aafbSBarry Smith 1312d382aafbSBarry Smith 1313d382aafbSBarry Smith /*MC 1314d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1315d382aafbSBarry Smith 1316eca87e8dSBarry Smith Synopsis: 1317aaa7dc30SBarry Smith #include <petscsys.h> 1318eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1319eca87e8dSBarry Smith 1320eca87e8dSBarry Smith Not Collective 1321eca87e8dSBarry Smith 1322d382aafbSBarry Smith Input Parameter: 1323d382aafbSBarry Smith + m1 - memory to free 1324d382aafbSBarry Smith . m2 - 2nd memory to free 1325d382aafbSBarry Smith . m3 - 3rd memory to free 1326d382aafbSBarry Smith . m4 - 4th memory to free 1327d382aafbSBarry Smith . m5 - 5th memory to free 1328d382aafbSBarry Smith - m6 - 6th memory to free 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith 1331d382aafbSBarry Smith Level: developer 1332d382aafbSBarry Smith 1333d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1334d382aafbSBarry Smith 1335d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1336d382aafbSBarry Smith 1337d382aafbSBarry Smith Concepts: memory allocation 1338d382aafbSBarry Smith 1339d382aafbSBarry Smith M*/ 1340b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1341d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1342d382aafbSBarry Smith #else 1343e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1344e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1345e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1346d382aafbSBarry Smith #endif 1347d382aafbSBarry Smith 1348d382aafbSBarry Smith /*MC 1349d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1350d382aafbSBarry Smith 1351eca87e8dSBarry Smith Synopsis: 1352aaa7dc30SBarry Smith #include <petscsys.h> 1353eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1354eca87e8dSBarry Smith 1355eca87e8dSBarry Smith Not Collective 1356eca87e8dSBarry Smith 1357d382aafbSBarry Smith Input Parameter: 1358d382aafbSBarry Smith + m1 - memory to free 1359d382aafbSBarry Smith . m2 - 2nd memory to free 1360d382aafbSBarry Smith . m3 - 3rd memory to free 1361d382aafbSBarry Smith . m4 - 4th memory to free 1362d382aafbSBarry Smith . m5 - 5th memory to free 1363d382aafbSBarry Smith . m6 - 6th memory to free 1364d382aafbSBarry Smith - m7 - 7th memory to free 1365d382aafbSBarry Smith 1366d382aafbSBarry Smith 1367d382aafbSBarry Smith Level: developer 1368d382aafbSBarry Smith 1369d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1370d382aafbSBarry Smith 1371d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1372d382aafbSBarry Smith PetscMalloc7() 1373d382aafbSBarry Smith 1374d382aafbSBarry Smith Concepts: memory allocation 1375d382aafbSBarry Smith 1376d382aafbSBarry Smith M*/ 1377b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1378d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1379d382aafbSBarry Smith #else 1380e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1381e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 138206c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1383e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1384d382aafbSBarry Smith #endif 1385d382aafbSBarry Smith 1386efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1387efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13883221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1389efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1391d382aafbSBarry Smith 1392d382aafbSBarry Smith /* 1393a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1394a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1395a5057860SBarry Smith timing etc. 1396a5057860SBarry Smith */ 1397a5057860SBarry Smith typedef double PetscLogDouble; 1398a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1399a5057860SBarry Smith 1400a5057860SBarry Smith /* 140166d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1402d382aafbSBarry Smith */ 1403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 14080acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1409efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1411574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1413d382aafbSBarry Smith 1414d382aafbSBarry Smith /*E 1415d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1416d382aafbSBarry Smith 1417d382aafbSBarry Smith Level: beginner 1418d382aafbSBarry Smith 1419d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1420d382aafbSBarry Smith 1421d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1422d382aafbSBarry Smith PetscDataTypeGetSize() 1423d382aafbSBarry Smith 1424d382aafbSBarry Smith E*/ 1425d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1426570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14276a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1428d382aafbSBarry Smith 1429d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1430d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1431d382aafbSBarry Smith #else 1432ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1433d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 143459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 143559a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1436570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1437570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1438d382aafbSBarry Smith #else 1439d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1440d382aafbSBarry Smith #endif 1441d382aafbSBarry Smith #endif 1442ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1443d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 144459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 144559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1446570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1447570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1448d382aafbSBarry Smith #else 1449d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1450d382aafbSBarry Smith #endif 1451d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1452d382aafbSBarry Smith 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14568e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1457d382aafbSBarry Smith 1458d382aafbSBarry Smith /* 1459d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1460d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1461d382aafbSBarry Smith functionality and/or error checking. 1462d382aafbSBarry Smith */ 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1467d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14792f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1480014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1481014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14842c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1485014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 148747340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14886fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14896991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14906991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1492d382aafbSBarry Smith 1493573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1494573b0fb4SBarry Smith 1495d382aafbSBarry Smith /*S 1496d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1497d382aafbSBarry Smith 1498d382aafbSBarry Smith Level: intermediate 1499d382aafbSBarry Smith 1500d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1501d382aafbSBarry Smith S*/ 1502d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1503d382aafbSBarry Smith 1504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1506014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1507d382aafbSBarry Smith 1508a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1509a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1510a53986e1SJed Brown 1511d382aafbSBarry Smith /* 1512d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1513d382aafbSBarry Smith */ 1514367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1515570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1516014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15172414b3c7SJed Brown #else 15182414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15192414b3c7SJed Brown #endif 1520570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1521014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1522014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1523d9822059SBarry Smith #else 1524d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1525d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1526d9822059SBarry Smith #endif 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1528d382aafbSBarry Smith 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1531eb3f98d2SBarry Smith 1532d382aafbSBarry Smith /*S 1533d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1534d382aafbSBarry Smith 1535d382aafbSBarry Smith Level: beginner 1536d382aafbSBarry Smith 15372981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1538d382aafbSBarry Smith 15392b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1540d382aafbSBarry Smith S*/ 1541d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1542d382aafbSBarry Smith 1543270bf2e7SJed Brown /*MC 1544127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1545127c8a3bSJed Brown 1546127c8a3bSJed Brown Level: developer 1547127c8a3bSJed Brown 1548127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1549127c8a3bSJed Brown 1550127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1551127c8a3bSJed Brown M*/ 155206e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 155306e41213SSatish Balay typedef int PetscObjectId; 155406e41213SSatish Balay #else 1555bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 155606e41213SSatish Balay #endif 1557127c8a3bSJed Brown 1558127c8a3bSJed Brown /*MC 1559270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1560270bf2e7SJed Brown 1561270bf2e7SJed Brown Level: developer 1562270bf2e7SJed Brown 1563270bf2e7SJed Brown Notes: 1564270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1565270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1566270bf2e7SJed Brown 15678dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1568270bf2e7SJed Brown M*/ 156906e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 157006e41213SSatish Balay typedef int PetscObjectState; 157106e41213SSatish Balay #else 1572bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 157306e41213SSatish Balay #endif 1574270bf2e7SJed Brown 1575d382aafbSBarry Smith /*S 1576140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1577d382aafbSBarry Smith by string name 1578d382aafbSBarry Smith 1579d382aafbSBarry Smith Level: advanced 1580d382aafbSBarry Smith 1581140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1582d382aafbSBarry Smith S*/ 1583140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1584d382aafbSBarry Smith 1585d382aafbSBarry Smith /*E 1586d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1587d382aafbSBarry Smith 1588d382aafbSBarry Smith Level: beginner 1589d382aafbSBarry Smith 15901cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15911cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15921cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15931cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15941cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1595d382aafbSBarry Smith 1596d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1597d382aafbSBarry Smith E*/ 1598d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1599d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1600d6a4318aSJed Brown 1601639ff905SBarry Smith /* 1602639ff905SBarry Smith Defines PETSc error handling. 1603639ff905SBarry Smith */ 1604639ff905SBarry Smith #include <petscerror.h> 1605d382aafbSBarry Smith 16060700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1607014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1608014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1610d382aafbSBarry Smith 1611d382aafbSBarry Smith /* 1612d382aafbSBarry Smith Routines that get memory usage information from the OS 1613d382aafbSBarry Smith */ 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1617b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1618d382aafbSBarry Smith 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1621d382aafbSBarry Smith 1622d382aafbSBarry Smith /* 1623d382aafbSBarry Smith Initialization of PETSc 1624d382aafbSBarry Smith */ 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1635d382aafbSBarry Smith 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1637607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1638d382aafbSBarry Smith 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1643d382aafbSBarry Smith 1644d382aafbSBarry Smith /* 1645d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16462981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1647d382aafbSBarry Smith */ 1648638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1649638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1650638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1651d382aafbSBarry Smith 1652d382aafbSBarry Smith /* 1653d382aafbSBarry Smith Functions that can act on any PETSc object. 1654d382aafbSBarry Smith */ 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1673bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1674bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16770eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16780eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1680d382aafbSBarry Smith 1681665c2dedSJed Brown #include <petscviewertypes.h> 1682639ff905SBarry Smith #include <petscoptions.h> 1683639ff905SBarry Smith 16840633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16850633abcbSJed Brown 1686639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1687c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1688dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1689639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16900005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16910005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1698014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1699685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1705d382aafbSBarry Smith 1706e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 17077aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1708e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1709e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1710e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1711e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1712e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1713e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1714e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1715e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1716e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 171715681b3cSBarry Smith 1718ec7429eaSBarry Smith #else 17197aab2a10SBarry Smith #define PetscSAWsBlock() 0 1720e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1721e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1722e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1723e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1724e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1725e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1726e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1727e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1728e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 172915681b3cSBarry Smith 1730ec7429eaSBarry Smith #endif 1731b90c6cbeSBarry Smith 17327d5d4d99SBarry Smith typedef void* PetscDLHandle; 1733e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 173482b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 173582b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 173682b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17377d5d4d99SBarry Smith 17385fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1739a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17405fe58b6fSBarry Smith #endif 17417eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1742a64a8e02SBarry Smith 1743d382aafbSBarry Smith /*S 1744140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1745d382aafbSBarry Smith 17461d0fab5eSBarry Smith Level: developer 1747d382aafbSBarry Smith 17481d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17491d0fab5eSBarry Smith 1750140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1751d382aafbSBarry Smith S*/ 1752140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1753d382aafbSBarry Smith 1754140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1755140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1756140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1757140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1758140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1759140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1760d382aafbSBarry Smith 1761d382aafbSBarry Smith /* 1762503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1763d382aafbSBarry Smith link libraries that will be loaded as needed. 1764d382aafbSBarry Smith */ 1765a240a19fSJed Brown 1766a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1767a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1768140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17691c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17701c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1771140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1772140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1773140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1774140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1775d382aafbSBarry Smith 1776d382aafbSBarry Smith /*S 1777d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1778d382aafbSBarry Smith 1779d382aafbSBarry Smith Level: advanced 1780d382aafbSBarry Smith 1781d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1782d382aafbSBarry Smith S*/ 1783d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1784014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1792d382aafbSBarry Smith 1793d382aafbSBarry Smith /* 1794d382aafbSBarry Smith Useful utility routines 1795d382aafbSBarry Smith */ 1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1802d382aafbSBarry Smith 1803503cfb0cSBarry Smith /* 1804ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1805503cfb0cSBarry Smith 1806503cfb0cSBarry Smith Notes: This is useful in cases like 1807503cfb0cSBarry Smith $ int *a; 1808ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 18091cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1810503cfb0cSBarry Smith */ 1811d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1812503cfb0cSBarry Smith 1813d382aafbSBarry Smith /*MC 1814d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1815d382aafbSBarry Smith 1816d382aafbSBarry Smith Synopsis: 1817aaa7dc30SBarry Smith #include <petscsys.h> 1818d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1819d382aafbSBarry Smith 1820eca87e8dSBarry Smith Not Collective 1821eca87e8dSBarry Smith 1822d382aafbSBarry Smith Input Parameters: 1823d382aafbSBarry Smith . format - the usual printf() format string 1824d382aafbSBarry Smith 1825d382aafbSBarry Smith Level: developer 1826d382aafbSBarry Smith 1827d382aafbSBarry Smith Fortran Note: 1828d382aafbSBarry Smith This routine is not supported in Fortran. 1829d382aafbSBarry Smith 1830d382aafbSBarry Smith Concepts: help messages^printing 1831d382aafbSBarry Smith Concepts: printing^help messages 1832d382aafbSBarry Smith 1833d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1834d382aafbSBarry Smith M*/ 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1836d382aafbSBarry Smith 1837fcfd50ebSBarry Smith /* 1838fcfd50ebSBarry Smith Defines PETSc profiling. 1839fcfd50ebSBarry Smith */ 18402c8e378dSBarry Smith #include <petsclog.h> 1841fcfd50ebSBarry Smith 1842fcfd50ebSBarry Smith /* 1843fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1844fcfd50ebSBarry Smith */ 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1852fcfd50ebSBarry Smith 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 185996a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 186074ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1861d382aafbSBarry Smith #endif 1862d382aafbSBarry Smith 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18650ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1870d382aafbSBarry Smith 1871014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith /*S 1874d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1875d382aafbSBarry Smith 1876d382aafbSBarry Smith Level: advanced 1877d382aafbSBarry Smith 1878d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1879d382aafbSBarry Smith S*/ 1880014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1881d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1882014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1883014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1884014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1885014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1886014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1887d382aafbSBarry Smith 1888d382aafbSBarry Smith /* 1889d382aafbSBarry Smith For use in debuggers 1890d382aafbSBarry Smith */ 1891014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1892014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1893014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1894014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1895014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1896d382aafbSBarry Smith 1897a663daf8SBarry Smith #include <stddef.h> 1898a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1899d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1900d382aafbSBarry Smith #include <stdlib.h> 1901d382aafbSBarry Smith #endif 19026c7e564aSBarry Smith 19034a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1904d382aafbSBarry Smith #include <xmmintrin.h> 1905d382aafbSBarry Smith #endif 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith /*@C 1908d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1909d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1910d382aafbSBarry Smith PetscMemmove() in that case. 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith Not Collective 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith Input Parameters: 1915d382aafbSBarry Smith + b - pointer to initial memory space 1916d382aafbSBarry Smith - n - length (in bytes) of space to copy 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith Output Parameter: 1919d382aafbSBarry Smith . a - pointer to copy space 1920d382aafbSBarry Smith 1921d382aafbSBarry Smith Level: intermediate 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith Compile Option: 1924d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1925d382aafbSBarry Smith for memory copies on double precision values. 1926d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1927d382aafbSBarry Smith for memory copies on double precision values. 1928d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1929d382aafbSBarry Smith for memory copies on double precision values. 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith Note: 1932d382aafbSBarry Smith This routine is analogous to memcpy(). 1933d382aafbSBarry Smith 1934503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1935503cfb0cSBarry Smith 1936d382aafbSBarry Smith Concepts: memory^copying 1937d382aafbSBarry Smith Concepts: copying^memory 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith .seealso: PetscMemmove() 1940d382aafbSBarry Smith 1941d382aafbSBarry Smith @*/ 19427087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1943d382aafbSBarry Smith { 1944d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1945c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1946c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1947a7e36092SMatthew G Knepley PetscFunctionBegin; 1948e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1949e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1950a7e36092SMatthew G Knepley #else 1951d382aafbSBarry Smith PetscFunctionBegin; 1952a7e36092SMatthew G Knepley #endif 1953a47a537aSLisandro Dalcin if (a != b && n > 0) { 1954d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1955e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1956d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1957d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1958d382aafbSBarry Smith #endif 1959d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1960c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1961d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1962d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1963c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1964c5df96a5SBarry Smith PetscErrorCode ierr; 1965c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19668b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1967d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1968d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1969d382aafbSBarry Smith #else 1970d382aafbSBarry Smith size_t i; 1971d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1972d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1973d382aafbSBarry Smith #endif 1974d382aafbSBarry Smith } else { 1975d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1976d382aafbSBarry Smith } 1977d382aafbSBarry Smith #else 1978d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1979d382aafbSBarry Smith #endif 1980d382aafbSBarry Smith } 1981d382aafbSBarry Smith PetscFunctionReturn(0); 1982d382aafbSBarry Smith } 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith /*@C 1985d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith Not Collective 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith Input Parameters: 1990d382aafbSBarry Smith + a - pointer to beginning memory location 1991d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1992d382aafbSBarry Smith 1993d382aafbSBarry Smith Level: intermediate 1994d382aafbSBarry Smith 1995d382aafbSBarry Smith Compile Option: 1996d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1997d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1998d382aafbSBarry Smith 1999503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 2000503cfb0cSBarry Smith 2001d382aafbSBarry Smith Concepts: memory^zeroing 2002d382aafbSBarry Smith Concepts: zeroing^memory 2003d382aafbSBarry Smith 2004d382aafbSBarry Smith .seealso: PetscMemcpy() 2005d382aafbSBarry Smith @*/ 20067087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 2007d382aafbSBarry Smith { 2008d382aafbSBarry Smith if (n > 0) { 2009d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2010e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2011d382aafbSBarry Smith #endif 2012d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2013d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2014d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2015d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2016d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2017d382aafbSBarry Smith } else { 2018d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2019d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2020d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2021d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2022d382aafbSBarry Smith } else { 2023d382aafbSBarry Smith #endif 2024d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2025d382aafbSBarry Smith bzero((char *)a,n); 2026d382aafbSBarry Smith #else 2027d382aafbSBarry Smith memset((char*)a,0,n); 2028d382aafbSBarry Smith #endif 2029d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2030d382aafbSBarry Smith } 2031d382aafbSBarry Smith #endif 2032d382aafbSBarry Smith } 2033d382aafbSBarry Smith return 0; 2034d382aafbSBarry Smith } 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith /*MC 2037d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2038d382aafbSBarry Smith 2039eca87e8dSBarry Smith Synopsis: 2040aaa7dc30SBarry Smith #include <petscsys.h> 2041eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2042eca87e8dSBarry Smith 2043d382aafbSBarry Smith Not Collective 2044d382aafbSBarry Smith 2045d382aafbSBarry Smith Input Parameters: 2046d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2047d382aafbSBarry Smith . n - number of elements to fetch 2048d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 204950d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2050d382aafbSBarry Smith 2051d382aafbSBarry Smith Level: developer 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith Notes: 2054d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2055d382aafbSBarry Smith 205650d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 205750d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 205850d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 205963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 206063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 206163cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2062d382aafbSBarry Smith 2063d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2064d382aafbSBarry Smith address). 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith Concepts: memory 2067d382aafbSBarry Smith M*/ 2068d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2069d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2070d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2071d382aafbSBarry Smith } while (0) 2072d382aafbSBarry Smith 2073d382aafbSBarry Smith /* 2074d382aafbSBarry Smith Determine if some of the kernel computation routines use 2075d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2076d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2077d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2078e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2079d382aafbSBarry Smith */ 2080d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2083d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2084d382aafbSBarry Smith #endif 2085d382aafbSBarry Smith 20865a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20875a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2088d382aafbSBarry Smith #endif 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2091d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2092d382aafbSBarry Smith #endif 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2095d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2096d382aafbSBarry Smith #endif 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2099d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2100d382aafbSBarry Smith #endif 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2103d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2104d382aafbSBarry Smith #endif 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2107d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2108d382aafbSBarry Smith #endif 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2111d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2115d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2116d382aafbSBarry Smith #endif 2117d382aafbSBarry Smith 2118d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2119d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2120d382aafbSBarry Smith #endif 2121d382aafbSBarry Smith 2122d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2123d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2124d382aafbSBarry Smith #endif 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2127d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2128d382aafbSBarry Smith #endif 2129d382aafbSBarry Smith 2130d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2131d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2132d382aafbSBarry Smith #endif 2133d382aafbSBarry Smith 2134d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2135d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2136d382aafbSBarry Smith #endif 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith #endif 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith /* 2141d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2142d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2143d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2144d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2145d382aafbSBarry Smith ugly extern "C" {} wrappers. 2146d382aafbSBarry Smith */ 2147d382aafbSBarry Smith #if defined(__cplusplus) 2148d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2149d382aafbSBarry Smith #define EXTERN_C_END } 2150d382aafbSBarry Smith #else 2151d382aafbSBarry Smith #define EXTERN_C_BEGIN 2152d382aafbSBarry Smith #define EXTERN_C_END 2153d382aafbSBarry Smith #endif 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith /*MC 2158d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2159d382aafbSBarry Smith communication 2160d382aafbSBarry Smith 2161d382aafbSBarry Smith Level: beginner 2162d382aafbSBarry Smith 2163d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2166d382aafbSBarry Smith M*/ 2167d382aafbSBarry Smith 2168d382aafbSBarry Smith /*MC 2169d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2170390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2171390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2172390e1bf2SBarry Smith 2173390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2174390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscScalar 2175d382aafbSBarry Smith 2176d382aafbSBarry Smith Level: beginner 2177d382aafbSBarry Smith 2178390e1bf2SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL, PetscComplex, MPIU_INT 2179d382aafbSBarry Smith M*/ 2180d382aafbSBarry Smith 2181d382aafbSBarry Smith /*MC 21828619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21838619c96cSJed Brown 21848619c96cSJed Brown Synopsis: 21858619c96cSJed Brown #include <petscsys.h> 21868619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21878619c96cSJed Brown 21888619c96cSJed Brown Level: beginner 21898619c96cSJed Brown 2190390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2191390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscComplex 2192390e1bf2SBarry Smith 2193390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2194390e1bf2SBarry Smith 21958cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21968619c96cSJed Brown 21978619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21988619c96cSJed Brown M*/ 21998619c96cSJed Brown 22008619c96cSJed Brown /*MC 2201d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith Level: beginner 2204d382aafbSBarry Smith 2205390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2206390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscReal 2207390e1bf2SBarry Smith 2208390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2209390e1bf2SBarry Smith 2210390e1bf2SBarry Smith .seealso: PetscScalar, PetscComplex, MPIU_REAL, MPIU_SCALAR 2211d382aafbSBarry Smith M*/ 2212d382aafbSBarry Smith 2213d382aafbSBarry Smith /*MC 2214d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2215d382aafbSBarry Smith 2216d382aafbSBarry Smith Level: beginner 2217d382aafbSBarry Smith 2218d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2219d382aafbSBarry Smith pass this value 2220d382aafbSBarry Smith 2221390e1bf2SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT, MPIU_REAL, MPIU_COMPLEX 2222d382aafbSBarry Smith M*/ 2223d382aafbSBarry Smith 2224d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2225d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2226014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2227014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2228d382aafbSBarry Smith #else 2229d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2230d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2231d382aafbSBarry Smith #endif 2232d382aafbSBarry Smith #endif 2233d382aafbSBarry Smith 2234d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2235d382aafbSBarry Smith 2236d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2237d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2238d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2239d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2240d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2241d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2242d382aafbSBarry Smith 224361b0d812SBarry Smith /*@C 224461b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 224561b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 224661b0d812SBarry Smith 224761b0d812SBarry Smith Not Collective 224861b0d812SBarry Smith 224961b0d812SBarry Smith Input Parameter: 225061b0d812SBarry Smith . a - the PetscInt value 225161b0d812SBarry Smith 225261b0d812SBarry Smith Output Parameter: 225361b0d812SBarry Smith . b - the resulting PetscBLASInt value 225461b0d812SBarry Smith 225561b0d812SBarry Smith Level: advanced 225661b0d812SBarry Smith 225761b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 225861b0d812SBarry Smith @*/ 2259c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2260c5df96a5SBarry Smith { 2261c5df96a5SBarry Smith PetscFunctionBegin; 2262ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2263c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2264c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2265c5df96a5SBarry Smith #endif 2266c5df96a5SBarry Smith PetscFunctionReturn(0); 2267c5df96a5SBarry Smith } 2268c5df96a5SBarry Smith 226961b0d812SBarry Smith /*@C 227061b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 227161b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 227261b0d812SBarry Smith 227361b0d812SBarry Smith Not Collective 227461b0d812SBarry Smith 227561b0d812SBarry Smith Input Parameter: 227661b0d812SBarry Smith . a - the PetscInt value 227761b0d812SBarry Smith 227861b0d812SBarry Smith Output Parameter: 227961b0d812SBarry Smith . b - the resulting PetscMPIInt value 228061b0d812SBarry Smith 228161b0d812SBarry Smith Level: advanced 228261b0d812SBarry Smith 228361b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 228461b0d812SBarry Smith @*/ 22854dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22864dc2109aSBarry Smith { 22874dc2109aSBarry Smith PetscFunctionBegin; 2288ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22894dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22904dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22914dc2109aSBarry Smith #endif 22924dc2109aSBarry Smith PetscFunctionReturn(0); 22934dc2109aSBarry Smith } 22944dc2109aSBarry Smith 2295bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 22962f18eb33SBarry Smith 22972f18eb33SBarry Smith /*@C 22982f18eb33SBarry Smith 22992f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 23002f18eb33SBarry Smith 23012f18eb33SBarry Smith Not Collective 23022f18eb33SBarry Smith 23032f18eb33SBarry Smith Input Parameter: 23042f18eb33SBarry Smith + a - the PetscReal value 23052f18eb33SBarry Smith - b - the second value 23062f18eb33SBarry Smith 2307390e1bf2SBarry Smith Returns: 2308390e1bf2SBarry Smith the result as a PetscInt value 23092f18eb33SBarry Smith 2310bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23112f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23122f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23132f18eb33SBarry Smith 23142f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23152f18eb33SBarry Smith 23162f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23172f18eb33SBarry Smith 23182f18eb33SBarry Smith Level: advanced 23192f18eb33SBarry Smith 2320390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23212f18eb33SBarry Smith @*/ 23222f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23232f18eb33SBarry Smith { 2324bafee8b4SSatish Balay PetscInt64 r; 23252f18eb33SBarry Smith 2326bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23272f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23282f18eb33SBarry Smith return (PetscInt) r; 23292f18eb33SBarry Smith } 23302f18eb33SBarry Smith 23312f18eb33SBarry Smith /*@C 23322f18eb33SBarry Smith 23332f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23342f18eb33SBarry Smith 23352f18eb33SBarry Smith Not Collective 23362f18eb33SBarry Smith 23372f18eb33SBarry Smith Input Parameter: 23382f18eb33SBarry Smith + a - the PetscInt value 23392f18eb33SBarry Smith - b - the second value 23402f18eb33SBarry Smith 2341390e1bf2SBarry Smith Returns: 2342390e1bf2SBarry Smith the result as a PetscInt value 23432f18eb33SBarry Smith 2344bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23452f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23462f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23472f18eb33SBarry Smith 23482f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23492f18eb33SBarry Smith 23502f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23512f18eb33SBarry Smith 23522f18eb33SBarry Smith Level: advanced 23532f18eb33SBarry Smith 2354390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23552f18eb33SBarry Smith @*/ 23562f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23572f18eb33SBarry Smith { 2358bafee8b4SSatish Balay PetscInt64 r; 23592f18eb33SBarry Smith 2360bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23612f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23622f18eb33SBarry Smith return (PetscInt) r; 23632f18eb33SBarry Smith } 23642f18eb33SBarry Smith 2365f91af8c7SBarry Smith /*@C 2366f91af8c7SBarry Smith 2367f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2368f91af8c7SBarry Smith 2369f91af8c7SBarry Smith Not Collective 2370f91af8c7SBarry Smith 2371f91af8c7SBarry Smith Input Parameter: 2372f91af8c7SBarry Smith + a - the PetscInt value 2373f91af8c7SBarry Smith - b - the second value 2374f91af8c7SBarry Smith 2375390e1bf2SBarry Smith Returns: 2376390e1bf2SBarry Smith the result as a PetscInt value 2377f91af8c7SBarry Smith 2378bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2379f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2380f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2381f91af8c7SBarry Smith 2382f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2383f91af8c7SBarry Smith 2384f91af8c7SBarry Smith Level: advanced 2385f91af8c7SBarry Smith 2386390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2387f91af8c7SBarry Smith @*/ 2388f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2389f91af8c7SBarry Smith { 2390bafee8b4SSatish Balay PetscInt64 r; 2391f91af8c7SBarry Smith 2392bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2393f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2394f91af8c7SBarry Smith return (PetscInt) r; 2395f91af8c7SBarry Smith } 2396f91af8c7SBarry Smith 23972f18eb33SBarry Smith /*@C 23982f18eb33SBarry Smith 23992f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 24002f18eb33SBarry Smith 24012f18eb33SBarry Smith Not Collective 24022f18eb33SBarry Smith 24032f18eb33SBarry Smith Input Parameter: 24042f18eb33SBarry Smith + a - the PetscInt value 24052f18eb33SBarry Smith - b - the second value 24062f18eb33SBarry Smith 24072f18eb33SBarry Smith Output Parameter:ma 2408390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24092f18eb33SBarry Smith 2410bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24112f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24122f18eb33SBarry Smith 2413220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24142f18eb33SBarry Smith 24152f18eb33SBarry Smith Level: advanced 24162f18eb33SBarry Smith 2417220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 24182f18eb33SBarry Smith @*/ 24192f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24202f18eb33SBarry Smith { 2421bafee8b4SSatish Balay PetscInt64 r; 24222f18eb33SBarry Smith 24232f18eb33SBarry Smith PetscFunctionBegin; 2424bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24252f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24262f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24272f18eb33SBarry Smith #endif 2428f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2429f91af8c7SBarry Smith PetscFunctionReturn(0); 2430f91af8c7SBarry Smith } 2431f91af8c7SBarry Smith 2432f91af8c7SBarry Smith /*@C 2433f91af8c7SBarry Smith 2434fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2435f91af8c7SBarry Smith 2436f91af8c7SBarry Smith Not Collective 2437f91af8c7SBarry Smith 2438f91af8c7SBarry Smith Input Parameter: 2439f91af8c7SBarry Smith + a - the PetscInt value 2440f91af8c7SBarry Smith - b - the second value 2441f91af8c7SBarry Smith 2442f91af8c7SBarry Smith Output Parameter:ma 2443390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2444f91af8c7SBarry Smith 2445bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2446f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2447f91af8c7SBarry Smith 2448f91af8c7SBarry Smith Level: advanced 2449f91af8c7SBarry Smith 2450390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2451f91af8c7SBarry Smith @*/ 2452f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2453f91af8c7SBarry Smith { 2454bafee8b4SSatish Balay PetscInt64 r; 2455f91af8c7SBarry Smith 2456f91af8c7SBarry Smith PetscFunctionBegin; 2457bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2458f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2459f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2460f91af8c7SBarry Smith #endif 2461f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24622f18eb33SBarry Smith PetscFunctionReturn(0); 24632f18eb33SBarry Smith } 2464c5df96a5SBarry Smith 2465d382aafbSBarry Smith /* 24662981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2467d382aafbSBarry Smith */ 2468d382aafbSBarry Smith #if defined(hz) 2469d382aafbSBarry Smith #undef hz 2470d382aafbSBarry Smith #endif 2471d382aafbSBarry Smith 2472d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2473d382aafbSBarry Smith 2474d382aafbSBarry Smith 2475d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2476d382aafbSBarry Smith #include <limits.h> 2477d382aafbSBarry Smith #endif 2478d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2479d382aafbSBarry Smith #include <sys/param.h> 2480d382aafbSBarry Smith #endif 2481d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2482d382aafbSBarry Smith #include <sys/types.h> 2483d382aafbSBarry Smith #endif 2484d382aafbSBarry Smith #if defined(MAXPATHLEN) 2485d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2486d382aafbSBarry Smith #elif defined(MAX_PATH) 2487d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2488d382aafbSBarry Smith #elif defined(_MAX_PATH) 2489d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2490d382aafbSBarry Smith #else 2491d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2492d382aafbSBarry Smith #endif 2493d382aafbSBarry Smith 2494d382aafbSBarry Smith /*MC 2495d382aafbSBarry Smith 24961b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 24971b266c99SBarry Smith of every function and module definition you need something like 2498d382aafbSBarry Smith 2499d382aafbSBarry Smith $ 2500af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2501d382aafbSBarry Smith $ use petscXXXX 25021b266c99SBarry Smith 25031b266c99SBarry Smith You can delcare PETSc variables using either 25041b266c99SBarry Smith 2505d382aafbSBarry Smith $ XXX variablename 25061b266c99SBarry Smith $ type(tXXX) variablename 25071b266c99SBarry Smith 25081b266c99SBarry Smith for example 25091b266c99SBarry Smith 2510bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 25111b266c99SBarry Smith $ use petscvec 2512d382aafbSBarry Smith $ 25131b266c99SBarry Smith $ Vec A 25141b266c99SBarry Smith $ type(tVec) A 2515d382aafbSBarry Smith 2516d382aafbSBarry Smith Level: beginner 2517d382aafbSBarry Smith 2518d382aafbSBarry Smith M*/ 2519d382aafbSBarry Smith 2520014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2521014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2522014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2524014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2525014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 252627710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25275f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2528d382aafbSBarry Smith 2529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 253160e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25356c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 253617d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 253717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 254017df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2543745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 25476c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 25486c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2549e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2550d382aafbSBarry Smith 2551014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2552014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2553d382aafbSBarry Smith 255476bdecfbSBarry Smith /*J 2555d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2556d382aafbSBarry Smith 2557d382aafbSBarry Smith Level: beginner 2558d382aafbSBarry Smith 2559e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2560d382aafbSBarry Smith with the option --download-sprng 2561d382aafbSBarry Smith 25628f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 256376bdecfbSBarry Smith J*/ 256419fd82e9SBarry Smith typedef const char* PetscRandomType; 2565d382aafbSBarry Smith #define PETSCRAND "rand" 2566d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2567d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2568c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2569d382aafbSBarry Smith 2570d382aafbSBarry Smith /* Logging support */ 2571014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2572d382aafbSBarry Smith 2573607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2574d382aafbSBarry Smith 2575d382aafbSBarry Smith /*S 2576d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2577d382aafbSBarry Smith 2578d382aafbSBarry Smith Level: intermediate 2579d382aafbSBarry Smith 2580d382aafbSBarry Smith Concepts: random numbers 2581d382aafbSBarry Smith 2582d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2583d382aafbSBarry Smith S*/ 2584d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2585d382aafbSBarry Smith 2586d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2587140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2588d382aafbSBarry Smith 2589bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 259019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 259219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2593685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2595d382aafbSBarry Smith 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2605d382aafbSBarry Smith 2606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 261397540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 261497540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2615d382aafbSBarry Smith 2616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2627e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2628d382aafbSBarry Smith 2629d382aafbSBarry Smith /* 2630d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2631d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2632d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2633d382aafbSBarry Smith PetscBinarySeek(). 2634d382aafbSBarry Smith */ 2635d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2636d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2637d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2638d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2639d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2640d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2641d382aafbSBarry Smith 2642d382aafbSBarry Smith /*E 2643d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2644d382aafbSBarry Smith 2645d382aafbSBarry Smith Level: advanced 2646d382aafbSBarry Smith 2647d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2648d382aafbSBarry Smith E*/ 2649d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2653d382aafbSBarry Smith 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2660d382aafbSBarry Smith 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2666cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2667cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2668d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2669d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2670d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2671d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 26726afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 26736afbe7ddSJed Brown MPI_Request**,MPI_Request**, 26746afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 26756afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 26766afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2677d382aafbSBarry Smith 26786145cd65SJed Brown /*E 26796145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 26806145cd65SJed Brown 26816145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 26826145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 26836145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 26846145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 26856145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 26861654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 26871654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 26886145cd65SJed Brown 26896145cd65SJed Brown Level: developer 26906145cd65SJed Brown 26916145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 26926145cd65SJed Brown E*/ 26936145cd65SJed Brown typedef enum { 26946145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 26956145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 26961654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 269712af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 26986145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 26996145cd65SJed Brown } PetscBuildTwoSidedType; 27006145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27016145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27026145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27036145cd65SJed Brown 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2705d382aafbSBarry Smith 2706d382aafbSBarry Smith /*E 2707d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2708d382aafbSBarry Smith 2709d382aafbSBarry Smith Level: beginner 2710d382aafbSBarry Smith 2711d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2712d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2713d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2714d382aafbSBarry Smith E*/ 27156fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2716d382aafbSBarry Smith 2717d382aafbSBarry Smith /*MC 2718d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2719d382aafbSBarry Smith 2720d382aafbSBarry Smith Level: beginner 2721d382aafbSBarry Smith 2722d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2723eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2724eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2725d382aafbSBarry Smith 2726d382aafbSBarry Smith M*/ 2727d382aafbSBarry Smith 2728d382aafbSBarry Smith /*MC 2729d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2730d382aafbSBarry Smith value into that location 2731d382aafbSBarry Smith 2732d382aafbSBarry Smith Level: beginner 2733d382aafbSBarry Smith 2734d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2735eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2736eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2737d382aafbSBarry Smith 2738d382aafbSBarry Smith M*/ 2739d382aafbSBarry Smith 2740d382aafbSBarry Smith /*MC 2741d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2742d382aafbSBarry Smith 2743d382aafbSBarry Smith Level: beginner 2744d382aafbSBarry Smith 2745d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2746d382aafbSBarry Smith 2747d382aafbSBarry Smith M*/ 2748d382aafbSBarry Smith 2749ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2750ce94432eSBarry Smith 275145487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 275245487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 275345487dadSJed Brown 2754d382aafbSBarry Smith /*S 2755306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2756306c2d5bSBarry Smith 2757306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2758306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 27593bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2760306c2d5bSBarry Smith 2761306c2d5bSBarry Smith Sample Usage: 2762306c2d5bSBarry Smith PetscSubcommCreate() 2763306c2d5bSBarry Smith PetscSubcommSetNumber() 2764306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2765306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2766306c2d5bSBarry Smith PetscSubcommDestroy() 2767d382aafbSBarry Smith 2768d382aafbSBarry Smith Level: advanced 2769d382aafbSBarry Smith 2770d382aafbSBarry Smith Concepts: communicator, create 2771306c2d5bSBarry Smith 2772306c2d5bSBarry Smith Notes: 2773306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 27743bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2775306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2776306c2d5bSBarry Smith 2777306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2778306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2779306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2780306c2d5bSBarry Smith 2781306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2782306c2d5bSBarry Smith are performed. 2783306c2d5bSBarry Smith 2784306c2d5bSBarry Smith 2785306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2786306c2d5bSBarry Smith 2787d382aafbSBarry Smith S*/ 2788d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2789d382aafbSBarry Smith 2790d382aafbSBarry Smith struct _n_PetscSubcomm { 2791d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2792d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2793306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 279445487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 279545487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2796708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 279745487dadSJed Brown PetscSubcommType type; 2798e5acf8a4SHong Zhang char *subcommprefix; 2799d382aafbSBarry Smith }; 2800d382aafbSBarry Smith 2801c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2802306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 280336be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2804014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2805014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2806014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2807014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 280865d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2809053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2810f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2811e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2812d382aafbSBarry Smith 28130f453b92SJed Brown /*S 28149962606eSBarry Smith PetscHeap - A simple class for managing heaps 28159962606eSBarry Smith 28169962606eSBarry Smith Level: intermediate 28179962606eSBarry Smith 28189962606eSBarry Smith Concepts: random numbers 28199962606eSBarry Smith 28209962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 28219962606eSBarry Smith S*/ 28229962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 28239962606eSBarry Smith 28249962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 28259962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 28269962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 28279962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 28289962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 28299962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 28309962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 28319962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 28329962606eSBarry Smith 28339962606eSBarry Smith /*S 28340f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28350f453b92SJed Brown 28360f453b92SJed Brown Level: developer 28370f453b92SJed Brown 28380f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28390f453b92SJed Brown S*/ 28400f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 284113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28420f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 284313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2844137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2845137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2846137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 284713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 284813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28490f453b92SJed Brown 2850471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2851471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2852471ecdacSJed Brown * possible. */ 285335005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2854d382aafbSBarry Smith 28559de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 28569de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 28579de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 28589de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 28599de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 28609de0f6ecSBarry Smith 2861268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2862fbfcfee5SBarry Smith 28631f817a21SBarry Smith /*@C 28641f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28651f817a21SBarry Smith 28661f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28671f817a21SBarry Smith 28681f817a21SBarry Smith Input Parameters: 28691f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28701f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28711f817a21SBarry Smith 2872850545d0SSatish Balay Level: intermediate 2873850545d0SSatish Balay 28741f817a21SBarry Smith Options Database: 2875063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 28761f817a21SBarry Smith @*/ 2877dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2878dff31646SBarry Smith { 2879dff31646SBarry Smith size_t len; 2880dff31646SBarry Smith char *vstring; 2881dff31646SBarry Smith PetscErrorCode ierr; 2882dff31646SBarry Smith 28831f817a21SBarry Smith PetscFunctionBegin; 28848d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2885dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 288635005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2887dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2888dff31646SBarry Smith if (set) *set = PETSC_TRUE; 28891f817a21SBarry Smith PetscFunctionReturn(0); 2890dff31646SBarry Smith } 2891dff31646SBarry Smith 2892b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2893fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2894fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2895f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2896fe278a28SBarry Smith 2897f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2898f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2899b967cddfSBarry Smith 290004102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2901763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2902dff31646SBarry Smith 290368e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29045dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2905d382aafbSBarry Smith 2906b2566f29SBarry Smith 2907b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2908b2566f29SBarry Smith /* 2909b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2910b2566f29SBarry Smith */ 29118f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 291277a5e07dSBarry Smith 291377a5e07dSBarry Smith /*MC 291477a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 291577a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 291677a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 291777a5e07dSBarry Smith 291877a5e07dSBarry Smith Collective on MPI_Comm 291977a5e07dSBarry Smith 292077a5e07dSBarry Smith Synopsis: 292177a5e07dSBarry Smith #include <petscsys.h> 292277a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 292377a5e07dSBarry Smith 292477a5e07dSBarry Smith Input Parameters: 292577a5e07dSBarry Smith + indata - pointer to the input data to be reduced 292677a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 292777a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 292877a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 292977a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 293077a5e07dSBarry Smith 293177a5e07dSBarry Smith Output Parameter: 293277a5e07dSBarry Smith . outdata - the reduced values 293377a5e07dSBarry Smith 293477a5e07dSBarry Smith Notes: In optimized mode this directly calls MPI_Allreduce() 293577a5e07dSBarry Smith 293677a5e07dSBarry Smith Level: developer 293777a5e07dSBarry Smith 293877a5e07dSBarry Smith .seealso: MPI_Allreduce() 293977a5e07dSBarry Smith M*/ 2940fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2941b2566f29SBarry Smith #else 2942b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2943b2566f29SBarry Smith #endif 2944b2566f29SBarry Smith 2945d382aafbSBarry Smith #endif 2946