1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ed938b00SJed Brown #if defined(__cplusplus) 44ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 45ed938b00SJed Brown #else 46ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 47ed938b00SJed Brown #endif 48ed938b00SJed Brown 49ed938b00SJed Brown #if defined(__cplusplus) 50ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 51ed938b00SJed Brown #else 52ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 53ed938b00SJed Brown #endif 54ed938b00SJed Brown 55ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 56014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 57014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 5821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 59014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 60014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 61014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 6221f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 63d382aafbSBarry Smith #else 64014dd563SJed Brown # define PETSC_DLLEXPORT 65014dd563SJed Brown # define PETSC_DLLIMPORT 6621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #endif 68014dd563SJed Brown 69014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 70014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 71014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 72014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 73014dd563SJed Brown #endif 74014dd563SJed Brown 752c280183SJed Brown #if defined(__cplusplus) 76014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 77638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 7821f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #else 80014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 81638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 826258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 83d382aafbSBarry Smith #endif 8427710113SBarry Smith 852c8e378dSBarry Smith #include <petscversion.h> 86301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 87d382aafbSBarry Smith 88d382aafbSBarry Smith /* ========================================================================== */ 89d382aafbSBarry Smith 90d382aafbSBarry Smith /* 91d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 92d382aafbSBarry Smith 93d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 94d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 95d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 96d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 97d382aafbSBarry Smith mpicxx.h directly in their code 98d382aafbSBarry Smith */ 99fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 100d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 101fa9e63e2SJed Brown #endif 102fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 103d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 104fa9e63e2SJed Brown #endif 1052c8e378dSBarry Smith #include <mpi.h> 10665013866SBarry Smith 107d382aafbSBarry Smith /* 1082981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 110d382aafbSBarry Smith */ 111d382aafbSBarry Smith #include <stdio.h> 112d382aafbSBarry Smith 113d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 114d382aafbSBarry Smith #if !defined(MPIAPI) 115d382aafbSBarry Smith #define MPIAPI 116d382aafbSBarry Smith #endif 117d382aafbSBarry Smith 118894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 119894dd566SJed Brown #if defined(__has_attribute) 120894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 121894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1228ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1238ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 124894dd566SJed Brown # endif 125894dd566SJed Brown #endif 126894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 127894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1288ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1298ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 130894dd566SJed Brown #endif 131b3506946SBarry Smith 132d382aafbSBarry Smith /*MC 133d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 134d382aafbSBarry Smith 135d382aafbSBarry Smith Level: beginner 136d382aafbSBarry Smith 137d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 138d382aafbSBarry Smith M*/ 139d382aafbSBarry Smith typedef int PetscErrorCode; 140d382aafbSBarry Smith 141d382aafbSBarry Smith /*MC 142d382aafbSBarry Smith 143503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 144d382aafbSBarry Smith (internal integer in the data structure used for error 1452981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1460700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 147d382aafbSBarry Smith 148d382aafbSBarry Smith Level: advanced 149d382aafbSBarry Smith 1500700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 151d382aafbSBarry Smith M*/ 1520700a824SBarry Smith typedef int PetscClassId; 153d382aafbSBarry Smith 154d382aafbSBarry Smith 155d382aafbSBarry Smith /*MC 156d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 157d382aafbSBarry Smith 158d382aafbSBarry Smith Level: intermediate 159d382aafbSBarry Smith 160d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1613b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 162d382aafbSBarry Smith 1634dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1642981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 165d382aafbSBarry Smith 166d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 167d382aafbSBarry Smith 168d382aafbSBarry Smith M*/ 169d382aafbSBarry Smith typedef int PetscMPIInt; 170d382aafbSBarry Smith 171d382aafbSBarry Smith /*MC 172d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 173d382aafbSBarry Smith 174d382aafbSBarry Smith Level: intermediate 175d382aafbSBarry Smith 176d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 177d382aafbSBarry Smith M*/ 178d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 1795a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 180d382aafbSBarry Smith 181fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 182fab38c73SJed Brown #include <stdint.h> 183fab38c73SJed Brown #endif 184fab38c73SJed Brown 185d382aafbSBarry Smith /*MC 186d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1873b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 188d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 189d382aafbSBarry Smith 190d382aafbSBarry Smith Level: intermediate 191d382aafbSBarry Smith 192d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 193d382aafbSBarry Smith M*/ 194fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 195fab38c73SJed Brown typedef int64_t Petsc64bitInt; 196fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 197f505b413SSatish Balay typedef long long Petsc64bitInt; 198f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 199236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 200236ed0a3SSatish Balay #else 201f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 202236ed0a3SSatish Balay #endif 203d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 204236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 20541860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 206fab38c73SJed Brown # define MPIU_INT MPI_INT64_T 207fab38c73SJed Brown # else 208d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 209fab38c73SJed Brown # endif 210d382aafbSBarry Smith #else 211d382aafbSBarry Smith typedef int PetscInt; 212d382aafbSBarry Smith #define MPIU_INT MPI_INT 213d382aafbSBarry Smith #endif 214236ed0a3SSatish Balay 215d382aafbSBarry Smith 216702bc34aSSatish Balay /*MC 217702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 218702bc34aSSatish Balay 219702bc34aSSatish Balay Level: intermediate 220702bc34aSSatish Balay 221702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 222702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 223702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 224702bc34aSSatish Balay 225c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2262981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 227702bc34aSSatish Balay 2282981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 229702bc34aSSatish Balay if you run ./configure with the option 230702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2312981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2322981ebdbSBarry Smith 2332981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2342981ebdbSBarry Smith 2352981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 236702bc34aSSatish Balay 237702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 238702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 239702bc34aSSatish Balay 240702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 241702bc34aSSatish Balay 242702bc34aSSatish Balay M*/ 243702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 244702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 245702bc34aSSatish Balay #else 246702bc34aSSatish Balay typedef int PetscBLASInt; 247702bc34aSSatish Balay #endif 248702bc34aSSatish Balay 24958b60935SBarry Smith /*EC 25058b60935SBarry Smith 2512981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 25258b60935SBarry Smith 25358b60935SBarry Smith Level: advanced 25458b60935SBarry Smith 25558b60935SBarry Smith .seealso: PetscObjectSetPrecision() 25658b60935SBarry Smith E*/ 25758b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 258014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 25958b60935SBarry Smith 260503cfb0cSBarry Smith /* 261503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 262503cfb0cSBarry Smith */ 263d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 264adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 265d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 266adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 267d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 268adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 269d382aafbSBarry Smith #else 270d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 271d382aafbSBarry Smith #endif 272d382aafbSBarry Smith 273d382aafbSBarry Smith 274d382aafbSBarry Smith /* 275d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 276d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 277d382aafbSBarry Smith */ 278014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 279d382aafbSBarry Smith 280d382aafbSBarry Smith /* 281d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 282d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 283d382aafbSBarry Smith */ 284014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 285d382aafbSBarry Smith 286d382aafbSBarry Smith /*MC 287d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 288d382aafbSBarry Smith 289d382aafbSBarry Smith Synopsis: 290f2ba6396SBarry Smith #include "petscsys.h" 291ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 292d382aafbSBarry Smith 293eca87e8dSBarry Smith Not Collective 294eca87e8dSBarry Smith 295d382aafbSBarry Smith Input Parameters: 296d382aafbSBarry Smith . cond - condition or expression 297d382aafbSBarry Smith 298d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 299d382aafbSBarry Smith branch is unlikely. 300d382aafbSBarry Smith 301d382aafbSBarry Smith Level: advanced 302d382aafbSBarry Smith 303d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 304d382aafbSBarry Smith M*/ 305d382aafbSBarry Smith 306d382aafbSBarry Smith /*MC 307d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 308d382aafbSBarry Smith 309d382aafbSBarry Smith Synopsis: 310f2ba6396SBarry Smith #include "petscsys.h" 311ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 312d382aafbSBarry Smith 313eca87e8dSBarry Smith Not Collective 314eca87e8dSBarry Smith 315d382aafbSBarry Smith Input Parameters: 316d382aafbSBarry Smith . cond - condition or expression 317d382aafbSBarry Smith 318d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 319d382aafbSBarry Smith branch is likely. 320d382aafbSBarry Smith 321d382aafbSBarry Smith Level: advanced 322d382aafbSBarry Smith 323d382aafbSBarry Smith .seealso: PetscUnlikely() 324d382aafbSBarry Smith M*/ 325d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 326d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 327d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 328d382aafbSBarry Smith #else 329cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 330cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 331d382aafbSBarry Smith #endif 332d382aafbSBarry Smith 333d382aafbSBarry Smith /* 334d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 335d382aafbSBarry Smith */ 3362c8e378dSBarry Smith #include <petscmath.h> 337d382aafbSBarry Smith 338d382aafbSBarry Smith /* 339d382aafbSBarry Smith Declare extern C stuff after including external header files 340d382aafbSBarry Smith */ 341d382aafbSBarry Smith 342d382aafbSBarry Smith 343d382aafbSBarry Smith /* 344d382aafbSBarry Smith Basic PETSc constants 345d382aafbSBarry Smith */ 346d382aafbSBarry Smith 347d382aafbSBarry Smith /*E 348ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 349d382aafbSBarry Smith 350d382aafbSBarry Smith Level: beginner 351d382aafbSBarry Smith 352ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 35334e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 35434e82e7dSBarry Smith 355d382aafbSBarry Smith E*/ 356ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3576a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3585a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 35970b3c8c7SBarry Smith 36070b3c8c7SBarry Smith /*E 36170b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 36270b3c8c7SBarry Smith 36370b3c8c7SBarry Smith Level: beginner 36470b3c8c7SBarry Smith 36570b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 36670b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 36770b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 36870b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 36970b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 37070b3c8c7SBarry Smith 37170b3c8c7SBarry Smith E*/ 37270b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3736a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 374d382aafbSBarry Smith 375d382aafbSBarry Smith /*MC 376ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 377d382aafbSBarry Smith 378d382aafbSBarry Smith Level: beginner 379d382aafbSBarry Smith 380d382aafbSBarry Smith Note: Zero integer 381d382aafbSBarry Smith 382ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 383d382aafbSBarry Smith M*/ 384d382aafbSBarry Smith 385d382aafbSBarry Smith /*MC 386ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 387d382aafbSBarry Smith 388d382aafbSBarry Smith Level: beginner 389d382aafbSBarry Smith 390d382aafbSBarry Smith Note: Nonzero integer 391d382aafbSBarry Smith 392ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 393d382aafbSBarry Smith M*/ 394d382aafbSBarry Smith 395d382aafbSBarry Smith /*MC 3960298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 397d382aafbSBarry Smith 398d382aafbSBarry Smith Level: beginner 399d382aafbSBarry Smith 400d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 401d382aafbSBarry Smith some default 402d382aafbSBarry Smith 403d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 404503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 405d382aafbSBarry Smith 406d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 407d382aafbSBarry Smith 408d382aafbSBarry Smith M*/ 4093bcbec90SJed Brown #define PETSC_NULL NULL 410d382aafbSBarry Smith 411d382aafbSBarry Smith /*MC 4120298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 413d382aafbSBarry Smith 414d382aafbSBarry Smith Level: beginner 415d382aafbSBarry Smith 416d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 417d382aafbSBarry Smith some default 418d382aafbSBarry Smith 419d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 420d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 421d382aafbSBarry Smith 422d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 423d382aafbSBarry Smith 424d382aafbSBarry Smith M*/ 4250298fd71SBarry Smith #define PETSC_IGNORE NULL 426d382aafbSBarry Smith 427d382aafbSBarry Smith /*MC 428557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 429557d4da8SBarry Smith where you wish PETSc to use the default. 430557d4da8SBarry Smith 431557d4da8SBarry Smith Level: beginner 432557d4da8SBarry Smith 433557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 434557d4da8SBarry Smith 435557d4da8SBarry Smith M*/ 436557d4da8SBarry Smith #define PETSC_DECIDE -1 437557d4da8SBarry Smith 438557d4da8SBarry Smith /*MC 439d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 440d382aafbSBarry Smith where you wish PETSc to compute the required value. 441d382aafbSBarry Smith 442d382aafbSBarry Smith Level: beginner 443d382aafbSBarry Smith 444557d4da8SBarry Smith 445557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 446557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 447557d4da8SBarry Smith 4480298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 449d382aafbSBarry Smith 450d382aafbSBarry Smith M*/ 451d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 452d382aafbSBarry Smith 453d382aafbSBarry Smith /*MC 454557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 455557d4da8SBarry Smith where you wish PETSc to use the default. 456557d4da8SBarry Smith 457557d4da8SBarry Smith Level: beginner 458557d4da8SBarry Smith 459557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 460557d4da8SBarry Smith 4610298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 462557d4da8SBarry Smith 463557d4da8SBarry Smith M*/ 464557d4da8SBarry Smith #define PETSC_DEFAULT -2 465557d4da8SBarry Smith 466557d4da8SBarry Smith /*MC 467d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 468d382aafbSBarry Smith all the processs that PETSc knows about. 469d382aafbSBarry Smith 470d382aafbSBarry Smith Level: beginner 471d382aafbSBarry Smith 472d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 473d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 474d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 475d382aafbSBarry Smith PetscInitialize() 476d382aafbSBarry Smith 477d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 478d382aafbSBarry Smith 479d382aafbSBarry Smith M*/ 480014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 481d382aafbSBarry Smith 482d382aafbSBarry Smith /*MC 483503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 484d382aafbSBarry Smith 485d382aafbSBarry Smith Level: beginner 486d382aafbSBarry Smith 487d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 488d382aafbSBarry Smith 489d382aafbSBarry Smith M*/ 490d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 491d382aafbSBarry Smith 492d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 493014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 494014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 495014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 4964cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 497d382aafbSBarry Smith 498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 499014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 501d382aafbSBarry Smith 502d382aafbSBarry Smith /*MC 503d382aafbSBarry Smith PetscMalloc - Allocates memory 504d382aafbSBarry Smith 505eca87e8dSBarry Smith Synopsis: 506f2ba6396SBarry Smith #include "petscsys.h" 507eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 508eca87e8dSBarry Smith 509eca87e8dSBarry Smith Not Collective 510eca87e8dSBarry Smith 511d382aafbSBarry Smith Input Parameter: 512d382aafbSBarry Smith . m - number of bytes to allocate 513d382aafbSBarry Smith 514d382aafbSBarry Smith Output Parameter: 515d382aafbSBarry Smith . result - memory allocated 516d382aafbSBarry Smith 517d382aafbSBarry Smith Level: beginner 518d382aafbSBarry Smith 519d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 520d382aafbSBarry Smith 521d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 522d382aafbSBarry Smith properly handle not freeing the null pointer. 523d382aafbSBarry Smith 524d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 525d382aafbSBarry Smith 526d382aafbSBarry Smith Concepts: memory allocation 527d382aafbSBarry Smith 528d382aafbSBarry Smith M*/ 529efca3c55SSatish Balay #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b)) : (*(b) = 0,0) ) 530d382aafbSBarry Smith 531d382aafbSBarry Smith /*MC 532503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 533d382aafbSBarry Smith 534d382aafbSBarry Smith Synopsis: 535f2ba6396SBarry Smith #include "petscsys.h" 536d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 537d382aafbSBarry Smith 538eca87e8dSBarry Smith Not Collective 539eca87e8dSBarry Smith 540eca87e8dSBarry Smith Input Parameters: 541eca87e8dSBarry Smith . addr - address to align (any pointer type) 542eca87e8dSBarry Smith 543d382aafbSBarry Smith Level: developer 544d382aafbSBarry Smith 545d382aafbSBarry Smith .seealso: PetscMallocAlign() 546d382aafbSBarry Smith 547d382aafbSBarry Smith Concepts: memory allocation 548d382aafbSBarry Smith M*/ 549d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 550d382aafbSBarry Smith 551d382aafbSBarry Smith /*MC 552785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 553785e854fSJed Brown 554785e854fSJed Brown Synopsis: 555785e854fSJed Brown #include "petscsys.h" 556785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 557785e854fSJed Brown 558785e854fSJed Brown Not Collective 559785e854fSJed Brown 560785e854fSJed Brown Input Parameter: 561785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 562785e854fSJed Brown 563785e854fSJed Brown Output Parameter: 564785e854fSJed Brown . r1 - memory allocated in first chunk 565785e854fSJed Brown 566785e854fSJed Brown Level: developer 567785e854fSJed Brown 568*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 569785e854fSJed Brown 570785e854fSJed Brown Concepts: memory allocation 571785e854fSJed Brown 572785e854fSJed Brown M*/ 573785e854fSJed Brown #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 574785e854fSJed Brown 575785e854fSJed Brown /*MC 576*1795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 577*1795a4d1SJed Brown 578*1795a4d1SJed Brown Synopsis: 579*1795a4d1SJed Brown #include "petscsys.h" 580*1795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 581*1795a4d1SJed Brown 582*1795a4d1SJed Brown Not Collective 583*1795a4d1SJed Brown 584*1795a4d1SJed Brown Input Parameter: 585*1795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 586*1795a4d1SJed Brown 587*1795a4d1SJed Brown Output Parameter: 588*1795a4d1SJed Brown . r1 - memory allocated in first chunk 589*1795a4d1SJed Brown 590*1795a4d1SJed Brown Level: developer 591*1795a4d1SJed Brown 592*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 593*1795a4d1SJed Brown 594*1795a4d1SJed Brown Concepts: memory allocation 595*1795a4d1SJed Brown 596*1795a4d1SJed Brown M*/ 597*1795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 598*1795a4d1SJed Brown 599*1795a4d1SJed Brown /*MC 600dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 601d382aafbSBarry Smith 602eca87e8dSBarry Smith Synopsis: 603f2ba6396SBarry Smith #include "petscsys.h" 604dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 605eca87e8dSBarry Smith 606eca87e8dSBarry Smith Not Collective 607eca87e8dSBarry Smith 608d382aafbSBarry Smith Input Parameter: 609d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 610dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 611d382aafbSBarry Smith 612d382aafbSBarry Smith Output Parameter: 613d382aafbSBarry Smith + r1 - memory allocated in first chunk 614d382aafbSBarry Smith - r2 - memory allocated in second chunk 615d382aafbSBarry Smith 616d382aafbSBarry Smith Level: developer 617d382aafbSBarry Smith 618*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 619d382aafbSBarry Smith 620d382aafbSBarry Smith Concepts: memory allocation 621d382aafbSBarry Smith 622d382aafbSBarry Smith M*/ 623d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 624dcca6d9dSJed Brown #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2)) 625d382aafbSBarry Smith #else 626dcca6d9dSJed Brown #define PetscMalloc2(m1,r1,m2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0)) 627d382aafbSBarry Smith #endif 628d382aafbSBarry Smith 629d382aafbSBarry Smith /*MC 630*1795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 631*1795a4d1SJed Brown 632*1795a4d1SJed Brown Synopsis: 633*1795a4d1SJed Brown #include "petscsys.h" 634*1795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 635*1795a4d1SJed Brown 636*1795a4d1SJed Brown Not Collective 637*1795a4d1SJed Brown 638*1795a4d1SJed Brown Input Parameter: 639*1795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 640*1795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 641*1795a4d1SJed Brown 642*1795a4d1SJed Brown Output Parameter: 643*1795a4d1SJed Brown + r1 - memory allocated in first chunk 644*1795a4d1SJed Brown - r2 - memory allocated in second chunk 645*1795a4d1SJed Brown 646*1795a4d1SJed Brown Level: developer 647*1795a4d1SJed Brown 648*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 649*1795a4d1SJed Brown 650*1795a4d1SJed Brown Concepts: memory allocation 651*1795a4d1SJed Brown M*/ 652*1795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 653*1795a4d1SJed Brown 654*1795a4d1SJed Brown /*MC 655dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 656d382aafbSBarry Smith 657eca87e8dSBarry Smith Synopsis: 658f2ba6396SBarry Smith #include "petscsys.h" 659dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 660eca87e8dSBarry Smith 661eca87e8dSBarry Smith Not Collective 662eca87e8dSBarry Smith 663d382aafbSBarry Smith Input Parameter: 664d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 665d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 666dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 667d382aafbSBarry Smith 668d382aafbSBarry Smith Output Parameter: 669d382aafbSBarry Smith + r1 - memory allocated in first chunk 670d382aafbSBarry Smith . r2 - memory allocated in second chunk 671d382aafbSBarry Smith - r3 - memory allocated in third chunk 672d382aafbSBarry Smith 673d382aafbSBarry Smith Level: developer 674d382aafbSBarry Smith 675*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 676d382aafbSBarry Smith 677d382aafbSBarry Smith Concepts: memory allocation 678d382aafbSBarry Smith 679d382aafbSBarry Smith M*/ 680d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 681dcca6d9dSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3)) 682d382aafbSBarry Smith #else 683dcca6d9dSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) \ 684dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0)) 685d382aafbSBarry Smith #endif 686d382aafbSBarry Smith 687d382aafbSBarry Smith /*MC 688*1795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 689*1795a4d1SJed Brown 690*1795a4d1SJed Brown Synopsis: 691*1795a4d1SJed Brown #include "petscsys.h" 692*1795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 693*1795a4d1SJed Brown 694*1795a4d1SJed Brown Not Collective 695*1795a4d1SJed Brown 696*1795a4d1SJed Brown Input Parameter: 697*1795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 698*1795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 699*1795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 700*1795a4d1SJed Brown 701*1795a4d1SJed Brown Output Parameter: 702*1795a4d1SJed Brown + r1 - memory allocated in first chunk 703*1795a4d1SJed Brown . r2 - memory allocated in second chunk 704*1795a4d1SJed Brown - r3 - memory allocated in third chunk 705*1795a4d1SJed Brown 706*1795a4d1SJed Brown Level: developer 707*1795a4d1SJed Brown 708*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 709*1795a4d1SJed Brown 710*1795a4d1SJed Brown Concepts: memory allocation 711*1795a4d1SJed Brown M*/ 712*1795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 713*1795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 714*1795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 715*1795a4d1SJed Brown 716*1795a4d1SJed Brown /*MC 717dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 718d382aafbSBarry Smith 719eca87e8dSBarry Smith Synopsis: 720f2ba6396SBarry Smith #include "petscsys.h" 721dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 722eca87e8dSBarry Smith 723eca87e8dSBarry Smith Not Collective 724eca87e8dSBarry Smith 725d382aafbSBarry Smith Input Parameter: 726d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 727d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 728d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 729dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 730d382aafbSBarry Smith 731d382aafbSBarry Smith Output Parameter: 732d382aafbSBarry Smith + r1 - memory allocated in first chunk 733d382aafbSBarry Smith . r2 - memory allocated in second chunk 734d382aafbSBarry Smith . r3 - memory allocated in third chunk 735d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 736d382aafbSBarry Smith 737d382aafbSBarry Smith Level: developer 738d382aafbSBarry Smith 739*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 740d382aafbSBarry Smith 741d382aafbSBarry Smith Concepts: memory allocation 742d382aafbSBarry Smith 743d382aafbSBarry Smith M*/ 744d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 745dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4)) 746d382aafbSBarry Smith #else 747dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 748dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) \ 749dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0)) 750d382aafbSBarry Smith #endif 751d382aafbSBarry Smith 752d382aafbSBarry Smith /*MC 753*1795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 754*1795a4d1SJed Brown 755*1795a4d1SJed Brown Synopsis: 756*1795a4d1SJed Brown #include "petscsys.h" 757*1795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 758*1795a4d1SJed Brown 759*1795a4d1SJed Brown Not Collective 760*1795a4d1SJed Brown 761*1795a4d1SJed Brown Input Parameter: 762*1795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 763*1795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 764*1795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 765*1795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 766*1795a4d1SJed Brown 767*1795a4d1SJed Brown Output Parameter: 768*1795a4d1SJed Brown + r1 - memory allocated in first chunk 769*1795a4d1SJed Brown . r2 - memory allocated in second chunk 770*1795a4d1SJed Brown . r3 - memory allocated in third chunk 771*1795a4d1SJed Brown - r4 - memory allocated in fourth chunk 772*1795a4d1SJed Brown 773*1795a4d1SJed Brown Level: developer 774*1795a4d1SJed Brown 775*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 776*1795a4d1SJed Brown 777*1795a4d1SJed Brown Concepts: memory allocation 778*1795a4d1SJed Brown 779*1795a4d1SJed Brown M*/ 780*1795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 781*1795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 782*1795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 783*1795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 784*1795a4d1SJed Brown 785*1795a4d1SJed Brown /*MC 786dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 787d382aafbSBarry Smith 788eca87e8dSBarry Smith Synopsis: 789f2ba6396SBarry Smith #include "petscsys.h" 790dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 791eca87e8dSBarry Smith 792eca87e8dSBarry Smith Not Collective 793eca87e8dSBarry Smith 794d382aafbSBarry Smith Input Parameter: 795d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 796d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 797d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 798d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 799dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 800d382aafbSBarry Smith 801d382aafbSBarry Smith Output Parameter: 802d382aafbSBarry Smith + r1 - memory allocated in first chunk 803d382aafbSBarry Smith . r2 - memory allocated in second chunk 804d382aafbSBarry Smith . r3 - memory allocated in third chunk 805d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 806d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 807d382aafbSBarry Smith 808d382aafbSBarry Smith Level: developer 809d382aafbSBarry Smith 810*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 811d382aafbSBarry Smith 812d382aafbSBarry Smith Concepts: memory allocation 813d382aafbSBarry Smith 814d382aafbSBarry Smith M*/ 815d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 816dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5)) 817d382aafbSBarry Smith #else 818dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 819dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) \ 820dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0)) 821d382aafbSBarry Smith #endif 822d382aafbSBarry Smith 823*1795a4d1SJed Brown /*MC 824*1795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 825*1795a4d1SJed Brown 826*1795a4d1SJed Brown Synopsis: 827*1795a4d1SJed Brown #include "petscsys.h" 828*1795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 829*1795a4d1SJed Brown 830*1795a4d1SJed Brown Not Collective 831*1795a4d1SJed Brown 832*1795a4d1SJed Brown Input Parameter: 833*1795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 834*1795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 835*1795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 836*1795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 837*1795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 838*1795a4d1SJed Brown 839*1795a4d1SJed Brown Output Parameter: 840*1795a4d1SJed Brown + r1 - memory allocated in first chunk 841*1795a4d1SJed Brown . r2 - memory allocated in second chunk 842*1795a4d1SJed Brown . r3 - memory allocated in third chunk 843*1795a4d1SJed Brown . r4 - memory allocated in fourth chunk 844*1795a4d1SJed Brown - r5 - memory allocated in fifth chunk 845*1795a4d1SJed Brown 846*1795a4d1SJed Brown Level: developer 847*1795a4d1SJed Brown 848*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 849*1795a4d1SJed Brown 850*1795a4d1SJed Brown Concepts: memory allocation 851*1795a4d1SJed Brown 852*1795a4d1SJed Brown M*/ 853*1795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 854*1795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 855*1795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 856*1795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 857d382aafbSBarry Smith 858d382aafbSBarry Smith /*MC 859dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 860d382aafbSBarry Smith 861eca87e8dSBarry Smith Synopsis: 862f2ba6396SBarry Smith #include "petscsys.h" 863dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 864eca87e8dSBarry Smith 865eca87e8dSBarry Smith Not Collective 866eca87e8dSBarry Smith 867d382aafbSBarry Smith Input Parameter: 868d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 869d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 870d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 871d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 872d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 873dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 874d382aafbSBarry Smith 875d382aafbSBarry Smith Output Parameter: 876d382aafbSBarry Smith + r1 - memory allocated in first chunk 877d382aafbSBarry Smith . r2 - memory allocated in second chunk 878d382aafbSBarry Smith . r3 - memory allocated in third chunk 879d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 880d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 881d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 882d382aafbSBarry Smith 883d382aafbSBarry Smith Level: developer 884d382aafbSBarry Smith 885*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 886d382aafbSBarry Smith 887d382aafbSBarry Smith Concepts: memory allocation 888d382aafbSBarry Smith 889d382aafbSBarry Smith M*/ 890d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 891dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6)) 892d382aafbSBarry Smith #else 893dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 894dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) \ 895dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0)) 896d382aafbSBarry Smith #endif 897d382aafbSBarry Smith 898d382aafbSBarry Smith /*MC 899*1795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 900*1795a4d1SJed Brown 901*1795a4d1SJed Brown Synopsis: 902*1795a4d1SJed Brown #include "petscsys.h" 903*1795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 904*1795a4d1SJed Brown 905*1795a4d1SJed Brown Not Collective 906*1795a4d1SJed Brown 907*1795a4d1SJed Brown Input Parameter: 908*1795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 909*1795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 910*1795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 911*1795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 912*1795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 913*1795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 914*1795a4d1SJed Brown 915*1795a4d1SJed Brown Output Parameter: 916*1795a4d1SJed Brown + r1 - memory allocated in first chunk 917*1795a4d1SJed Brown . r2 - memory allocated in second chunk 918*1795a4d1SJed Brown . r3 - memory allocated in third chunk 919*1795a4d1SJed Brown . r4 - memory allocated in fourth chunk 920*1795a4d1SJed Brown . r5 - memory allocated in fifth chunk 921*1795a4d1SJed Brown - r6 - memory allocated in sixth chunk 922*1795a4d1SJed Brown 923*1795a4d1SJed Brown Level: developer 924*1795a4d1SJed Brown 925*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 926*1795a4d1SJed Brown 927*1795a4d1SJed Brown Concepts: memory allocation 928*1795a4d1SJed Brown M*/ 929*1795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 930*1795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 931*1795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 932*1795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 933*1795a4d1SJed Brown 934*1795a4d1SJed Brown /*MC 935dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 936d382aafbSBarry Smith 937eca87e8dSBarry Smith Synopsis: 938f2ba6396SBarry Smith #include "petscsys.h" 939dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 940eca87e8dSBarry Smith 941eca87e8dSBarry Smith Not Collective 942eca87e8dSBarry Smith 943d382aafbSBarry Smith Input Parameter: 944d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 945d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 946d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 947d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 948d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 949d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 950dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 951d382aafbSBarry Smith 952d382aafbSBarry Smith Output Parameter: 953d382aafbSBarry Smith + r1 - memory allocated in first chunk 954d382aafbSBarry Smith . r2 - memory allocated in second chunk 955d382aafbSBarry Smith . r3 - memory allocated in third chunk 956d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 957d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 958d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 959eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 960d382aafbSBarry Smith 961d382aafbSBarry Smith Level: developer 962d382aafbSBarry Smith 963*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 964d382aafbSBarry Smith 965d382aafbSBarry Smith Concepts: memory allocation 966d382aafbSBarry Smith 967d382aafbSBarry Smith M*/ 968d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 969dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6) || PetscMalloc((m7)*sizeof(**(r7)),r7)) 970d382aafbSBarry Smith #else 971dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 972dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) \ 973dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0)) 974d382aafbSBarry Smith #endif 975d382aafbSBarry Smith 976d382aafbSBarry Smith /*MC 977*1795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 978*1795a4d1SJed Brown 979*1795a4d1SJed Brown Synopsis: 980*1795a4d1SJed Brown #include "petscsys.h" 981*1795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 982*1795a4d1SJed Brown 983*1795a4d1SJed Brown Not Collective 984*1795a4d1SJed Brown 985*1795a4d1SJed Brown Input Parameter: 986*1795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 987*1795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 988*1795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 989*1795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 990*1795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 991*1795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 992*1795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 993*1795a4d1SJed Brown 994*1795a4d1SJed Brown Output Parameter: 995*1795a4d1SJed Brown + r1 - memory allocated in first chunk 996*1795a4d1SJed Brown . r2 - memory allocated in second chunk 997*1795a4d1SJed Brown . r3 - memory allocated in third chunk 998*1795a4d1SJed Brown . r4 - memory allocated in fourth chunk 999*1795a4d1SJed Brown . r5 - memory allocated in fifth chunk 1000*1795a4d1SJed Brown . r6 - memory allocated in sixth chunk 1001*1795a4d1SJed Brown - r7 - memory allocated in seventh chunk 1002*1795a4d1SJed Brown 1003*1795a4d1SJed Brown Level: developer 1004*1795a4d1SJed Brown 1005*1795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 1006*1795a4d1SJed Brown 1007*1795a4d1SJed Brown Concepts: memory allocation 1008*1795a4d1SJed Brown M*/ 1009*1795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1010*1795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1011*1795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 1012*1795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 1013*1795a4d1SJed Brown || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 1014*1795a4d1SJed Brown 1015*1795a4d1SJed Brown /*MC 1016503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1017d382aafbSBarry Smith 1018eca87e8dSBarry Smith Synopsis: 1019f2ba6396SBarry Smith #include "petscsys.h" 1020eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 1021eca87e8dSBarry Smith 1022eca87e8dSBarry Smith Not Collective 1023eca87e8dSBarry Smith 1024d382aafbSBarry Smith Input Parameter: 1025d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 1026d382aafbSBarry Smith 1027d382aafbSBarry Smith Output Parameter: 1028d382aafbSBarry Smith . result - memory allocated 1029d382aafbSBarry Smith 1030d382aafbSBarry Smith Level: beginner 1031d382aafbSBarry Smith 1032ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith Concepts: memory allocation 1035d382aafbSBarry Smith 1036d382aafbSBarry Smith M*/ 1037d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 1038ad0619ddSBarry Smith 1039ad0619ddSBarry Smith /*MC 1040ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1041ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1042ad0619ddSBarry Smith 1043ad0619ddSBarry Smith Synopsis: 1044f2ba6396SBarry Smith #include "petscsys.h" 1045ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 1046ad0619ddSBarry Smith 1047ad0619ddSBarry Smith Not Collective 1048ad0619ddSBarry Smith 1049ad0619ddSBarry Smith Input Parameter: 1050ad0619ddSBarry Smith + obj - object memory is logged to 1051ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 1052ad0619ddSBarry Smith 1053ad0619ddSBarry Smith Output Parameter: 1054ad0619ddSBarry Smith . result - memory allocated 1055ad0619ddSBarry Smith 1056ad0619ddSBarry Smith Level: developer 1057ad0619ddSBarry Smith 1058ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1059ad0619ddSBarry Smith 1060ad0619ddSBarry Smith Concepts: memory allocation 1061ad0619ddSBarry Smith 1062ad0619ddSBarry Smith M*/ 10633bb1ff40SBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(A)) : 0)) 1064d382aafbSBarry Smith 1065d382aafbSBarry Smith /*MC 1066d382aafbSBarry Smith PetscFree - Frees memory 1067d382aafbSBarry Smith 1068eca87e8dSBarry Smith Synopsis: 1069f2ba6396SBarry Smith #include "petscsys.h" 1070eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1071eca87e8dSBarry Smith 1072eca87e8dSBarry Smith Not Collective 1073eca87e8dSBarry Smith 1074d382aafbSBarry Smith Input Parameter: 1075d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1076d382aafbSBarry Smith 1077d382aafbSBarry Smith Level: beginner 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 1080d382aafbSBarry Smith 1081d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith Concepts: memory allocation 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith M*/ 1086efca3c55SSatish Balay #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0))) 1087d382aafbSBarry Smith 1088d382aafbSBarry Smith /*MC 1089d382aafbSBarry Smith PetscFreeVoid - Frees memory 1090d382aafbSBarry Smith 1091d382aafbSBarry Smith Synopsis: 1092f2ba6396SBarry Smith #include "petscsys.h" 1093d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1094d382aafbSBarry Smith 1095eca87e8dSBarry Smith Not Collective 1096eca87e8dSBarry Smith 1097eca87e8dSBarry Smith Input Parameter: 1098eca87e8dSBarry Smith . memory - memory to free 1099eca87e8dSBarry Smith 1100d382aafbSBarry Smith Level: beginner 1101d382aafbSBarry Smith 1102d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1103d382aafbSBarry Smith 1104d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1105d382aafbSBarry Smith 1106d382aafbSBarry Smith Concepts: memory allocation 1107d382aafbSBarry Smith 1108d382aafbSBarry Smith M*/ 1109efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1110d382aafbSBarry Smith 1111d382aafbSBarry Smith 1112d382aafbSBarry Smith /*MC 1113d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1114d382aafbSBarry Smith 1115eca87e8dSBarry Smith Synopsis: 1116f2ba6396SBarry Smith #include "petscsys.h" 1117eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1118eca87e8dSBarry Smith 1119eca87e8dSBarry Smith Not Collective 1120eca87e8dSBarry Smith 1121d382aafbSBarry Smith Input Parameter: 1122d382aafbSBarry Smith + memory1 - memory to free 1123d382aafbSBarry Smith - memory2 - 2nd memory to free 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith Level: developer 1126d382aafbSBarry Smith 1127d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1130d382aafbSBarry Smith 1131d382aafbSBarry Smith Concepts: memory allocation 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith M*/ 1134d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1135d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1136d382aafbSBarry Smith #else 113781dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 1138d382aafbSBarry Smith #endif 1139d382aafbSBarry Smith 1140d382aafbSBarry Smith /*MC 1141d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1142d382aafbSBarry Smith 1143eca87e8dSBarry Smith Synopsis: 1144f2ba6396SBarry Smith #include "petscsys.h" 1145eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1146eca87e8dSBarry Smith 1147eca87e8dSBarry Smith Not Collective 1148eca87e8dSBarry Smith 1149d382aafbSBarry Smith Input Parameter: 1150d382aafbSBarry Smith + memory1 - memory to free 1151d382aafbSBarry Smith . memory2 - 2nd memory to free 1152d382aafbSBarry Smith - memory3 - 3rd memory to free 1153d382aafbSBarry Smith 1154d382aafbSBarry Smith Level: developer 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1157d382aafbSBarry Smith 1158d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1159d382aafbSBarry Smith 1160d382aafbSBarry Smith Concepts: memory allocation 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith M*/ 1163d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1164d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1165d382aafbSBarry Smith #else 116681dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 1167d382aafbSBarry Smith #endif 1168d382aafbSBarry Smith 1169d382aafbSBarry Smith /*MC 1170d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1171d382aafbSBarry Smith 1172eca87e8dSBarry Smith Synopsis: 1173f2ba6396SBarry Smith #include "petscsys.h" 1174eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1175eca87e8dSBarry Smith 1176eca87e8dSBarry Smith Not Collective 1177eca87e8dSBarry Smith 1178d382aafbSBarry Smith Input Parameter: 1179d382aafbSBarry Smith + m1 - memory to free 1180d382aafbSBarry Smith . m2 - 2nd memory to free 1181d382aafbSBarry Smith . m3 - 3rd memory to free 1182d382aafbSBarry Smith - m4 - 4th memory to free 1183d382aafbSBarry Smith 1184d382aafbSBarry Smith Level: developer 1185d382aafbSBarry Smith 1186d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith Concepts: memory allocation 1191d382aafbSBarry Smith 1192d382aafbSBarry Smith M*/ 1193d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1194d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1195d382aafbSBarry Smith #else 119681dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1197d382aafbSBarry Smith #endif 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith /*MC 1200d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1201d382aafbSBarry Smith 1202eca87e8dSBarry Smith Synopsis: 1203f2ba6396SBarry Smith #include "petscsys.h" 1204eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1205eca87e8dSBarry Smith 1206eca87e8dSBarry Smith Not Collective 1207eca87e8dSBarry Smith 1208d382aafbSBarry Smith Input Parameter: 1209d382aafbSBarry Smith + m1 - memory to free 1210d382aafbSBarry Smith . m2 - 2nd memory to free 1211d382aafbSBarry Smith . m3 - 3rd memory to free 1212d382aafbSBarry Smith . m4 - 4th memory to free 1213d382aafbSBarry Smith - m5 - 5th memory to free 1214d382aafbSBarry Smith 1215d382aafbSBarry Smith Level: developer 1216d382aafbSBarry Smith 1217d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1218d382aafbSBarry Smith 1219d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1220d382aafbSBarry Smith 1221d382aafbSBarry Smith Concepts: memory allocation 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith M*/ 1224d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1225d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1226d382aafbSBarry Smith #else 122781dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1228d382aafbSBarry Smith #endif 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith 1231d382aafbSBarry Smith /*MC 1232d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1233d382aafbSBarry Smith 1234eca87e8dSBarry Smith Synopsis: 1235f2ba6396SBarry Smith #include "petscsys.h" 1236eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1237eca87e8dSBarry Smith 1238eca87e8dSBarry Smith Not Collective 1239eca87e8dSBarry Smith 1240d382aafbSBarry Smith Input Parameter: 1241d382aafbSBarry Smith + m1 - memory to free 1242d382aafbSBarry Smith . m2 - 2nd memory to free 1243d382aafbSBarry Smith . m3 - 3rd memory to free 1244d382aafbSBarry Smith . m4 - 4th memory to free 1245d382aafbSBarry Smith . m5 - 5th memory to free 1246d382aafbSBarry Smith - m6 - 6th memory to free 1247d382aafbSBarry Smith 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith Level: developer 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1252d382aafbSBarry Smith 1253d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith Concepts: memory allocation 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith M*/ 1258d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1259d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1260d382aafbSBarry Smith #else 126181dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1262d382aafbSBarry Smith #endif 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith /*MC 1265d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1266d382aafbSBarry Smith 1267eca87e8dSBarry Smith Synopsis: 1268f2ba6396SBarry Smith #include "petscsys.h" 1269eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1270eca87e8dSBarry Smith 1271eca87e8dSBarry Smith Not Collective 1272eca87e8dSBarry Smith 1273d382aafbSBarry Smith Input Parameter: 1274d382aafbSBarry Smith + m1 - memory to free 1275d382aafbSBarry Smith . m2 - 2nd memory to free 1276d382aafbSBarry Smith . m3 - 3rd memory to free 1277d382aafbSBarry Smith . m4 - 4th memory to free 1278d382aafbSBarry Smith . m5 - 5th memory to free 1279d382aafbSBarry Smith . m6 - 6th memory to free 1280d382aafbSBarry Smith - m7 - 7th memory to free 1281d382aafbSBarry Smith 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith Level: developer 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1288d382aafbSBarry Smith PetscMalloc7() 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith Concepts: memory allocation 1291d382aafbSBarry Smith 1292d382aafbSBarry Smith M*/ 1293d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1294d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1295d382aafbSBarry Smith #else 129681dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1297d382aafbSBarry Smith #endif 1298d382aafbSBarry Smith 1299efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1300efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1301efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1303d382aafbSBarry Smith 1304d382aafbSBarry Smith /* 1305a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1306a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1307a5057860SBarry Smith timing etc. 1308a5057860SBarry Smith */ 1309a5057860SBarry Smith typedef double PetscLogDouble; 1310a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1311a5057860SBarry Smith 1312a5057860SBarry Smith /* 131366d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1314d382aafbSBarry Smith */ 1315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13200acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1321efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1322014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1323574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1325d382aafbSBarry Smith 1326d382aafbSBarry Smith /*E 1327d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1328d382aafbSBarry Smith 1329d382aafbSBarry Smith Level: beginner 1330d382aafbSBarry Smith 1331d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1332d382aafbSBarry Smith 1333d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1334d382aafbSBarry Smith PetscDataTypeGetSize() 1335d382aafbSBarry Smith 1336d382aafbSBarry Smith E*/ 1337d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13382d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 13396a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1340d382aafbSBarry Smith 1341d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1342d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1343d382aafbSBarry Smith #else 1344ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1345d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 134659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 134759a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1348d382aafbSBarry Smith #else 1349d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1350d382aafbSBarry Smith #endif 1351d382aafbSBarry Smith #endif 1352ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1353d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 135459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 135559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1356d382aafbSBarry Smith #else 1357d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1358d382aafbSBarry Smith #endif 1359d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1360d382aafbSBarry Smith 1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 13648e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1365d382aafbSBarry Smith 1366d382aafbSBarry Smith /* 1367d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1368d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1369d382aafbSBarry Smith functionality and/or error checking. 1370d382aafbSBarry Smith */ 1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1375d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 13872f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 13922c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 139547340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 13966fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1398d382aafbSBarry Smith 1399573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1400573b0fb4SBarry Smith 1401d382aafbSBarry Smith /*S 1402d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1403d382aafbSBarry Smith 1404d382aafbSBarry Smith Level: intermediate 1405d382aafbSBarry Smith 1406d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1407d382aafbSBarry Smith S*/ 1408d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1409d382aafbSBarry Smith 1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1413d382aafbSBarry Smith 1414a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1415a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1416a53986e1SJed Brown 1417d382aafbSBarry Smith /* 1418d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1419d382aafbSBarry Smith */ 1420014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14217c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1422014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14232414b3c7SJed Brown #else 14242414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14252414b3c7SJed Brown #endif 14262414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1427014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1428014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1429d9822059SBarry Smith #else 1430d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1431d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1432d9822059SBarry Smith #endif 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1434d382aafbSBarry Smith 1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1437eb3f98d2SBarry Smith 1438d382aafbSBarry Smith /*S 1439d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1440d382aafbSBarry Smith 1441d382aafbSBarry Smith Level: beginner 1442d382aafbSBarry Smith 14432981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1444d382aafbSBarry Smith 14451890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1446d382aafbSBarry Smith S*/ 1447d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1448d382aafbSBarry Smith 1449270bf2e7SJed Brown /*MC 1450127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1451127c8a3bSJed Brown 1452127c8a3bSJed Brown Level: developer 1453127c8a3bSJed Brown 1454127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1455127c8a3bSJed Brown 1456127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1457127c8a3bSJed Brown M*/ 1458127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1459127c8a3bSJed Brown 1460127c8a3bSJed Brown /*MC 1461270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1462270bf2e7SJed Brown 1463270bf2e7SJed Brown Level: developer 1464270bf2e7SJed Brown 1465270bf2e7SJed Brown Notes: 1466270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1467270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1468270bf2e7SJed Brown 14698dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1470270bf2e7SJed Brown M*/ 1471270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1472270bf2e7SJed Brown 1473d382aafbSBarry Smith /*S 1474140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1475d382aafbSBarry Smith by string name 1476d382aafbSBarry Smith 1477d382aafbSBarry Smith Level: advanced 1478d382aafbSBarry Smith 1479140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1480d382aafbSBarry Smith S*/ 1481140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1482d382aafbSBarry Smith 1483d382aafbSBarry Smith /*E 1484d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1485d382aafbSBarry Smith 1486d382aafbSBarry Smith Level: beginner 1487d382aafbSBarry Smith 1488d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1489d382aafbSBarry Smith 1490d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1491d382aafbSBarry Smith 1492d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1493d382aafbSBarry Smith 1494d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1495d382aafbSBarry Smith 1496d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1497d382aafbSBarry Smith 1498d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1499d382aafbSBarry Smith E*/ 1500d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1501d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1502d6a4318aSJed Brown 1503639ff905SBarry Smith /* 1504639ff905SBarry Smith Defines PETSc error handling. 1505639ff905SBarry Smith */ 1506639ff905SBarry Smith #include <petscerror.h> 1507d382aafbSBarry Smith 15080700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1509014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1510014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1511014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1512d382aafbSBarry Smith 1513d382aafbSBarry Smith /* 1514d382aafbSBarry Smith Routines that get memory usage information from the OS 1515d382aafbSBarry Smith */ 1516014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1519d382aafbSBarry Smith 1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1521014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1522d382aafbSBarry Smith 1523d382aafbSBarry Smith /* 1524d382aafbSBarry Smith Initialization of PETSc 1525d382aafbSBarry Smith */ 1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1536d382aafbSBarry Smith 1537014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1538607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1539d382aafbSBarry Smith 1540014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD; 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1543014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void); 1544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1548d382aafbSBarry Smith 1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1550014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1551014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1552014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1553d382aafbSBarry Smith 1554d382aafbSBarry Smith /* 1555d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15562981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1557d382aafbSBarry Smith */ 1558638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1559638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1560638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1561d382aafbSBarry Smith 1562d382aafbSBarry Smith /* 1563d382aafbSBarry Smith Functions that can act on any PETSc object. 1564d382aafbSBarry Smith */ 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1584bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1585bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1593d382aafbSBarry Smith 1594665c2dedSJed Brown #include <petscviewertypes.h> 1595639ff905SBarry Smith #include <petscoptions.h> 1596639ff905SBarry Smith 1597639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1598dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1599639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16000005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16010005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1614d382aafbSBarry Smith 1615e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16167aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1617e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1618e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1619e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1620e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1621e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1622e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1623e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1624e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1625e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 162615681b3cSBarry Smith 1627ec7429eaSBarry Smith #else 16287aab2a10SBarry Smith #define PetscSAWsBlock() 0 1629e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1630e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1631e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1632e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1633e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1634e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1635e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1636e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1637e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 163815681b3cSBarry Smith 1639ec7429eaSBarry Smith #endif 1640b90c6cbeSBarry Smith 16417d5d4d99SBarry Smith typedef void* PetscDLHandle; 1642e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 164382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 164482b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 164582b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16467d5d4d99SBarry Smith 1647d382aafbSBarry Smith 16485fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1649a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16505fe58b6fSBarry Smith #endif 16517eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1652a64a8e02SBarry Smith 1653d382aafbSBarry Smith /*S 1654140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1655d382aafbSBarry Smith 16561d0fab5eSBarry Smith Level: developer 1657d382aafbSBarry Smith 16581d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16591d0fab5eSBarry Smith 1660140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1661d382aafbSBarry Smith S*/ 1662140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1663d382aafbSBarry Smith 1664140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1665140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1666140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1667140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1668140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1669140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1670d382aafbSBarry Smith 1671d382aafbSBarry Smith /* 1672503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1673d382aafbSBarry Smith link libraries that will be loaded as needed. 1674d382aafbSBarry Smith */ 1675a240a19fSJed Brown 1676a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1677a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1678140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 16791c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 16801c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1681140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1682140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1683140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1684140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1685d382aafbSBarry Smith 1686d382aafbSBarry Smith /*S 1687d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1688d382aafbSBarry Smith 1689d382aafbSBarry Smith Level: advanced 1690d382aafbSBarry Smith 1691d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1692d382aafbSBarry Smith S*/ 1693d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1694014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1698014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1702d382aafbSBarry Smith 1703d382aafbSBarry Smith /* 1704d382aafbSBarry Smith Useful utility routines 1705d382aafbSBarry Smith */ 1706014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1708014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1709014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1712d382aafbSBarry Smith 1713503cfb0cSBarry Smith /* 1714ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1715503cfb0cSBarry Smith 1716503cfb0cSBarry Smith Notes: This is useful in cases like 1717503cfb0cSBarry Smith $ int *a; 1718ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1719ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1720503cfb0cSBarry Smith */ 1721d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1722503cfb0cSBarry Smith 1723cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1724cae2f346SBarry Smith # include <valgrind/valgrind.h> 1725cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1726cae2f346SBarry Smith #else 1727cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1728cae2f346SBarry Smith #endif 1729cae2f346SBarry Smith 1730238ccf28SShri Abhyankar 1731d382aafbSBarry Smith /*MC 1732d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1733d382aafbSBarry Smith 1734d382aafbSBarry Smith Synopsis: 1735f2ba6396SBarry Smith #include "petscsys.h" 1736d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1737d382aafbSBarry Smith 1738eca87e8dSBarry Smith Not Collective 1739eca87e8dSBarry Smith 1740d382aafbSBarry Smith Input Parameters: 1741d382aafbSBarry Smith . format - the usual printf() format string 1742d382aafbSBarry Smith 1743d382aafbSBarry Smith Level: developer 1744d382aafbSBarry Smith 1745d382aafbSBarry Smith Fortran Note: 1746d382aafbSBarry Smith This routine is not supported in Fortran. 1747d382aafbSBarry Smith 1748d382aafbSBarry Smith Concepts: help messages^printing 1749d382aafbSBarry Smith Concepts: printing^help messages 1750d382aafbSBarry Smith 1751d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1752d382aafbSBarry Smith M*/ 1753014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1754d382aafbSBarry Smith 1755fcfd50ebSBarry Smith /* 1756fcfd50ebSBarry Smith Defines PETSc profiling. 1757fcfd50ebSBarry Smith */ 17582c8e378dSBarry Smith #include <petsclog.h> 1759fcfd50ebSBarry Smith 1760b90c6cbeSBarry Smith 1761fcfd50ebSBarry Smith 1762fcfd50ebSBarry Smith /* 1763fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1764fcfd50ebSBarry Smith */ 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1772fcfd50ebSBarry Smith 1773fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1774fcfd50ebSBarry Smith #include <stdarg.h> 1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1778fcfd50ebSBarry Smith 1779fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1781fcfd50ebSBarry Smith #endif 1782fcfd50ebSBarry Smith 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1786d382aafbSBarry Smith 1787d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 178996a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 179074ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1791d382aafbSBarry Smith #endif 1792d382aafbSBarry Smith 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 17950ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1800d382aafbSBarry Smith 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1802d382aafbSBarry Smith 1803d382aafbSBarry Smith /*S 1804d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1805d382aafbSBarry Smith 1806d382aafbSBarry Smith Level: advanced 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1809d382aafbSBarry Smith S*/ 1810014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1811d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1817d382aafbSBarry Smith 1818d382aafbSBarry Smith /* 1819d382aafbSBarry Smith For use in debuggers 1820d382aafbSBarry Smith */ 1821014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1822014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1826d382aafbSBarry Smith 1827a663daf8SBarry Smith #include <stddef.h> 1828d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1829d382aafbSBarry Smith #include <memory.h> 1830d382aafbSBarry Smith #endif 1831d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1832d382aafbSBarry Smith #include <stdlib.h> 1833d382aafbSBarry Smith #endif 18346c7e564aSBarry Smith 18354a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1836d382aafbSBarry Smith #include <xmmintrin.h> 1837d382aafbSBarry Smith #endif 1838d382aafbSBarry Smith 1839fcfd50ebSBarry Smith #undef __FUNCT__ 1840fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1841d382aafbSBarry Smith /*@C 1842d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1843d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1844d382aafbSBarry Smith PetscMemmove() in that case. 1845d382aafbSBarry Smith 1846d382aafbSBarry Smith Not Collective 1847d382aafbSBarry Smith 1848d382aafbSBarry Smith Input Parameters: 1849d382aafbSBarry Smith + b - pointer to initial memory space 1850d382aafbSBarry Smith - n - length (in bytes) of space to copy 1851d382aafbSBarry Smith 1852d382aafbSBarry Smith Output Parameter: 1853d382aafbSBarry Smith . a - pointer to copy space 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith Level: intermediate 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith Compile Option: 1858d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1859d382aafbSBarry Smith for memory copies on double precision values. 1860d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1861d382aafbSBarry Smith for memory copies on double precision values. 1862d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1863d382aafbSBarry Smith for memory copies on double precision values. 1864d382aafbSBarry Smith 1865d382aafbSBarry Smith Note: 1866d382aafbSBarry Smith This routine is analogous to memcpy(). 1867d382aafbSBarry Smith 1868503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1869503cfb0cSBarry Smith 1870d382aafbSBarry Smith Concepts: memory^copying 1871d382aafbSBarry Smith Concepts: copying^memory 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith .seealso: PetscMemmove() 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith @*/ 18767087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1877d382aafbSBarry Smith { 1878d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1879d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1880d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1881a7e36092SMatthew G Knepley PetscFunctionBegin; 1882e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1883e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1884a7e36092SMatthew G Knepley #else 1885d382aafbSBarry Smith PetscFunctionBegin; 1886a7e36092SMatthew G Knepley #endif 1887d382aafbSBarry Smith if (a != b) { 1888d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1889e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1890d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1891d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1892d382aafbSBarry Smith #endif 1893d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1894d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1895d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1896d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1897c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1898c5df96a5SBarry Smith PetscErrorCode ierr; 1899c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19008b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1901d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1902d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1903d382aafbSBarry Smith #else 1904d382aafbSBarry Smith size_t i; 1905d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1906d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1907d382aafbSBarry Smith #endif 1908d382aafbSBarry Smith } else { 1909d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1910d382aafbSBarry Smith } 1911d382aafbSBarry Smith #else 1912d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1913d382aafbSBarry Smith #endif 1914d382aafbSBarry Smith } 1915d382aafbSBarry Smith PetscFunctionReturn(0); 1916d382aafbSBarry Smith } 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith /*@C 1919d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1920d382aafbSBarry Smith 1921d382aafbSBarry Smith Not Collective 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith Input Parameters: 1924d382aafbSBarry Smith + a - pointer to beginning memory location 1925d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith Level: intermediate 1928d382aafbSBarry Smith 1929d382aafbSBarry Smith Compile Option: 1930d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1931d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1932d382aafbSBarry Smith 1933503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1934503cfb0cSBarry Smith 1935d382aafbSBarry Smith Concepts: memory^zeroing 1936d382aafbSBarry Smith Concepts: zeroing^memory 1937d382aafbSBarry Smith 1938d382aafbSBarry Smith .seealso: PetscMemcpy() 1939d382aafbSBarry Smith @*/ 19407087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1941d382aafbSBarry Smith { 1942d382aafbSBarry Smith if (n > 0) { 1943d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1944e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1947d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1948d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1949d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1950d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1951d382aafbSBarry Smith } else { 1952d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1953d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1954d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1955d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1956d382aafbSBarry Smith } else { 1957d382aafbSBarry Smith #endif 1958d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1959d382aafbSBarry Smith bzero((char *)a,n); 1960d382aafbSBarry Smith #else 1961d382aafbSBarry Smith memset((char*)a,0,n); 1962d382aafbSBarry Smith #endif 1963d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1964d382aafbSBarry Smith } 1965d382aafbSBarry Smith #endif 1966d382aafbSBarry Smith } 1967d382aafbSBarry Smith return 0; 1968d382aafbSBarry Smith } 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith /*MC 1971d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1972d382aafbSBarry Smith 1973eca87e8dSBarry Smith Synopsis: 1974f2ba6396SBarry Smith #include "petscsys.h" 1975eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1976eca87e8dSBarry Smith 1977d382aafbSBarry Smith Not Collective 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith Input Parameters: 1980d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1981d382aafbSBarry Smith . n - number of elements to fetch 1982d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 198350d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1984d382aafbSBarry Smith 1985d382aafbSBarry Smith Level: developer 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith Notes: 1988d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1989d382aafbSBarry Smith 199050d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 199150d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 199250d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 199363cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 199463cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 199563cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1996d382aafbSBarry Smith 1997d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1998d382aafbSBarry Smith address). 1999d382aafbSBarry Smith 2000d382aafbSBarry Smith Concepts: memory 2001d382aafbSBarry Smith M*/ 2002d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2003d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2004d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2005d382aafbSBarry Smith } while (0) 2006d382aafbSBarry Smith 2007d382aafbSBarry Smith /* 2008d382aafbSBarry Smith Determine if some of the kernel computation routines use 2009d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2010d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2011d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2012e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2013d382aafbSBarry Smith */ 2014d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2017d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2018d382aafbSBarry Smith #endif 2019d382aafbSBarry Smith 20205a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20215a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2022d382aafbSBarry Smith #endif 2023d382aafbSBarry Smith 2024d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2025d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2026d382aafbSBarry Smith #endif 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2029d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2030d382aafbSBarry Smith #endif 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2033d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2034d382aafbSBarry Smith #endif 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2037d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2038d382aafbSBarry Smith #endif 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2041d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2042d382aafbSBarry Smith #endif 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2045d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2046d382aafbSBarry Smith #endif 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2049d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2050d382aafbSBarry Smith #endif 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2053d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2057d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2058d382aafbSBarry Smith #endif 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2061d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2062d382aafbSBarry Smith #endif 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2065d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2066d382aafbSBarry Smith #endif 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2069d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2070d382aafbSBarry Smith #endif 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith #endif 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith /* 2075d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2076d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2077d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2078d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2079d382aafbSBarry Smith ugly extern "C" {} wrappers. 2080d382aafbSBarry Smith */ 2081d382aafbSBarry Smith #if defined(__cplusplus) 2082d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2083d382aafbSBarry Smith #define EXTERN_C_END } 2084d382aafbSBarry Smith #else 2085d382aafbSBarry Smith #define EXTERN_C_BEGIN 2086d382aafbSBarry Smith #define EXTERN_C_END 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2090d382aafbSBarry Smith 2091d382aafbSBarry Smith /*MC 2092d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2093d382aafbSBarry Smith communication 2094d382aafbSBarry Smith 2095d382aafbSBarry Smith Level: beginner 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2098d382aafbSBarry Smith 2099d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2100d382aafbSBarry Smith M*/ 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith /*MC 2103d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2104d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2105d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2106d382aafbSBarry Smith 2107d382aafbSBarry Smith 2108d382aafbSBarry Smith Level: beginner 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2111d382aafbSBarry Smith M*/ 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith /*MC 21148619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21158619c96cSJed Brown 21168619c96cSJed Brown Synopsis: 21178619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 21188619c96cSJed Brown #include <petscsys.h> 21198619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21208619c96cSJed Brown 21218619c96cSJed Brown Level: beginner 21228619c96cSJed Brown 21238619c96cSJed Brown Note: 21248619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 21258619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 21268619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 21278619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 21288619c96cSJed Brown 21298619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21308619c96cSJed Brown M*/ 21318619c96cSJed Brown 21328619c96cSJed Brown /*MC 2133d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith Level: beginner 2136d382aafbSBarry Smith 2137d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2138d382aafbSBarry Smith M*/ 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith /*MC 2141d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2142d382aafbSBarry Smith Level: beginner 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2145d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2148d382aafbSBarry Smith M*/ 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith /*MC 2151d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith Level: beginner 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2156d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2159d382aafbSBarry Smith M*/ 2160d382aafbSBarry Smith 2161d382aafbSBarry Smith /*MC 2162d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith Level: beginner 2165d382aafbSBarry Smith 2166d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2167d382aafbSBarry Smith pass this value 2168d382aafbSBarry Smith 2169d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2170d382aafbSBarry Smith M*/ 2171d382aafbSBarry Smith 2172d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2173d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2174014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2175014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2176d382aafbSBarry Smith #else 2177d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2178d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2179d382aafbSBarry Smith #endif 2180d382aafbSBarry Smith #endif 2181d382aafbSBarry Smith 2182d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2183d382aafbSBarry Smith 2184d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2185d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2186d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2187d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2188d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2189d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2190d382aafbSBarry Smith 2191c5df96a5SBarry Smith #undef __FUNCT__ 2192c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 2193c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2194c5df96a5SBarry Smith { 2195c5df96a5SBarry Smith PetscFunctionBegin; 2196c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2197c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2198c5df96a5SBarry Smith #endif 2199c5df96a5SBarry Smith *b = (PetscBLASInt)(a); 2200c5df96a5SBarry Smith PetscFunctionReturn(0); 2201c5df96a5SBarry Smith } 2202c5df96a5SBarry Smith 22034dc2109aSBarry Smith #undef __FUNCT__ 22044dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 22054dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22064dc2109aSBarry Smith { 22074dc2109aSBarry Smith PetscFunctionBegin; 22084dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22094dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22104dc2109aSBarry Smith #endif 22114dc2109aSBarry Smith *b = (PetscMPIInt)(a); 22124dc2109aSBarry Smith PetscFunctionReturn(0); 22134dc2109aSBarry Smith } 22144dc2109aSBarry Smith 2215c5df96a5SBarry Smith 2216d382aafbSBarry Smith /* 22172981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2218d382aafbSBarry Smith */ 2219d382aafbSBarry Smith #if defined(hz) 2220d382aafbSBarry Smith #undef hz 2221d382aafbSBarry Smith #endif 2222d382aafbSBarry Smith 2223d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2224d382aafbSBarry Smith 2225d382aafbSBarry Smith 2226d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2227d382aafbSBarry Smith #include <limits.h> 2228d382aafbSBarry Smith #endif 2229d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2230d382aafbSBarry Smith #include <sys/param.h> 2231d382aafbSBarry Smith #endif 2232d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2233d382aafbSBarry Smith #include <sys/types.h> 2234d382aafbSBarry Smith #endif 2235d382aafbSBarry Smith #if defined(MAXPATHLEN) 2236d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2237d382aafbSBarry Smith #elif defined(MAX_PATH) 2238d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2239d382aafbSBarry Smith #elif defined(_MAX_PATH) 2240d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2241d382aafbSBarry Smith #else 2242d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2243d382aafbSBarry Smith #endif 2244d382aafbSBarry Smith 2245d382aafbSBarry Smith /* Special support for C++ */ 22462c280183SJed Brown #if defined(PETSC_CLANGUAGE_CXX) && defined(__cplusplus) 22472c8e378dSBarry Smith #include <petscsys.hh> 22482c8e378dSBarry Smith #endif 22496c7e564aSBarry Smith 2250d382aafbSBarry Smith /*MC 2251d382aafbSBarry Smith 2252d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2253d382aafbSBarry Smith 2254d382aafbSBarry Smith $ 1) classic Fortran 77 style 2255d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2256d382aafbSBarry Smith $ XXX variablename 2257d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2258d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2259d382aafbSBarry Smith $ 2260d382aafbSBarry Smith $ 2) classic Fortran 90 style 2261d1716517SSatish Balay $#include "finclude/petscXXX.h" 2262d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2263d382aafbSBarry Smith $ XXX variablename 2264d382aafbSBarry Smith $ 2265d382aafbSBarry Smith $ 3) Using Fortran modules 2266d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2267d382aafbSBarry Smith $ use petscXXXX 2268d382aafbSBarry Smith $ XXX variablename 2269d382aafbSBarry Smith $ 2270d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2271d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2272d382aafbSBarry Smith $ use petscXXXX 2273d382aafbSBarry Smith $ type(XXX) variablename 2274e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2275d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2276d382aafbSBarry Smith 2277d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2278d382aafbSBarry Smith 2279d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2280d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2281d382aafbSBarry Smith $ integer variablename 2282d382aafbSBarry Smith $ 2283d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2284d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2285d382aafbSBarry Smith 2286d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2287d382aafbSBarry Smith for only a few PETSc functions. 2288d382aafbSBarry Smith 2289d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2290d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2291d382aafbSBarry Smith you cannot have something like 2292d382aafbSBarry Smith $ PetscInt row,col 2293d382aafbSBarry Smith $ PetscScalar val 2294d382aafbSBarry Smith $ ... 2295d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2296d382aafbSBarry Smith You must instead have 2297d382aafbSBarry Smith $ PetscInt row(1),col(1) 2298d382aafbSBarry Smith $ PetscScalar val(1) 2299d382aafbSBarry Smith $ ... 2300d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2301d382aafbSBarry Smith 2302d382aafbSBarry Smith 2303d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2304d382aafbSBarry Smith 2305d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2306d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2307d382aafbSBarry Smith 2308d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2309d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2310d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2311d382aafbSBarry Smith 2312d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2313e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2314d382aafbSBarry Smith 2315d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2316d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2317d382aafbSBarry Smith 2318d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2319d382aafbSBarry Smith automatically by "make allfortranstubs". 2320d382aafbSBarry Smith 2321e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2322d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2323d382aafbSBarry Smith include their predecessors 2324d382aafbSBarry Smith 2325d382aafbSBarry Smith Level: beginner 2326d382aafbSBarry Smith 2327d382aafbSBarry Smith M*/ 2328d382aafbSBarry Smith 2329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2331014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2332014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2333014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 233527710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2336d382aafbSBarry Smith 2337014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 233960e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2341014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2342014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 234417d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 234517d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2346014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2350745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2355d382aafbSBarry Smith 2356014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2358d382aafbSBarry Smith 235976bdecfbSBarry Smith /*J 2360d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2361d382aafbSBarry Smith 2362d382aafbSBarry Smith Level: beginner 2363d382aafbSBarry Smith 2364e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2365d382aafbSBarry Smith with the option --download-sprng 2366d382aafbSBarry Smith 23678f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 236876bdecfbSBarry Smith J*/ 236919fd82e9SBarry Smith typedef const char* PetscRandomType; 2370d382aafbSBarry Smith #define PETSCRAND "rand" 2371d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2372d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2373d382aafbSBarry Smith 2374d382aafbSBarry Smith /* Logging support */ 2375014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2376d382aafbSBarry Smith 2377607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2378d382aafbSBarry Smith 2379d382aafbSBarry Smith /*S 2380d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2381d382aafbSBarry Smith 2382d382aafbSBarry Smith Level: intermediate 2383d382aafbSBarry Smith 2384d382aafbSBarry Smith Concepts: random numbers 2385d382aafbSBarry Smith 2386d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2387d382aafbSBarry Smith S*/ 2388d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2389d382aafbSBarry Smith 2390d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2391140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2392014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2393d382aafbSBarry Smith 2394607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2395bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 239619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 239819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2399146574abSBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,const char[],const char[]); 2400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2401d382aafbSBarry Smith 2402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2411d382aafbSBarry Smith 2412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2419d382aafbSBarry Smith 2420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2431e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2433d382aafbSBarry Smith 2434d382aafbSBarry Smith /* 2435d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2436d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2437d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2438d382aafbSBarry Smith PetscBinarySeek(). 2439d382aafbSBarry Smith */ 2440d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2441d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2442d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2443d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2444d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2445d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2446d382aafbSBarry Smith 2447d382aafbSBarry Smith /*E 2448d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2449d382aafbSBarry Smith 2450d382aafbSBarry Smith Level: advanced 2451d382aafbSBarry Smith 2452d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2453d382aafbSBarry Smith E*/ 2454d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2458d382aafbSBarry Smith 2459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2465d382aafbSBarry Smith 2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2471f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2472d382aafbSBarry Smith 24736145cd65SJed Brown /*E 24746145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 24756145cd65SJed Brown 24766145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 24776145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 24786145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 24796145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 24806145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 24816145cd65SJed Brown 24826145cd65SJed Brown Level: developer 24836145cd65SJed Brown 24846145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 24856145cd65SJed Brown E*/ 24866145cd65SJed Brown typedef enum { 24876145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 24886145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 24896145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 24906145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 24916145cd65SJed Brown } PetscBuildTwoSidedType; 24926145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 24936145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 24946145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 24956145cd65SJed Brown 2496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2497d382aafbSBarry Smith 2498d382aafbSBarry Smith /*E 2499d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2500d382aafbSBarry Smith 2501d382aafbSBarry Smith Level: beginner 2502d382aafbSBarry Smith 2503d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2504d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2505d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2506d382aafbSBarry Smith E*/ 25076fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2508d382aafbSBarry Smith 2509d382aafbSBarry Smith /*MC 2510d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2511d382aafbSBarry Smith 2512d382aafbSBarry Smith Level: beginner 2513d382aafbSBarry Smith 2514d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2515eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2516eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2517d382aafbSBarry Smith 2518d382aafbSBarry Smith M*/ 2519d382aafbSBarry Smith 2520d382aafbSBarry Smith /*MC 2521d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2522d382aafbSBarry Smith value into that location 2523d382aafbSBarry Smith 2524d382aafbSBarry Smith Level: beginner 2525d382aafbSBarry Smith 2526d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2527eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2528eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2529d382aafbSBarry Smith 2530d382aafbSBarry Smith M*/ 2531d382aafbSBarry Smith 2532d382aafbSBarry Smith /*MC 2533d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2534d382aafbSBarry Smith 2535d382aafbSBarry Smith Level: beginner 2536d382aafbSBarry Smith 2537d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2538d382aafbSBarry Smith 2539d382aafbSBarry Smith M*/ 2540d382aafbSBarry Smith 2541ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2542ce94432eSBarry Smith 254345487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 254445487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 254545487dadSJed Brown 2546d382aafbSBarry Smith /*S 2547d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2548d382aafbSBarry Smith 2549d382aafbSBarry Smith Level: advanced 2550d382aafbSBarry Smith 2551d382aafbSBarry Smith Concepts: communicator, create 2552d382aafbSBarry Smith S*/ 2553d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2554d382aafbSBarry Smith 2555d382aafbSBarry Smith struct _n_PetscSubcomm { 2556d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2557d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2558d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 255945487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 256045487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2561708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 256245487dadSJed Brown PetscSubcommType type; 2563d382aafbSBarry Smith }; 2564d382aafbSBarry Smith 2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 256965d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2570053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2571f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2572d382aafbSBarry Smith 25730f453b92SJed Brown /*S 25740f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 25750f453b92SJed Brown 25760f453b92SJed Brown Level: developer 25770f453b92SJed Brown 25780f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 25790f453b92SJed Brown S*/ 25800f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 258113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 25820f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 258313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2584137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2585137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2586137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 258713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 258813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 25890f453b92SJed Brown 2590471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2591471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2592471ecdacSJed Brown * possible. */ 2593f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2594d382aafbSBarry Smith 2595dff31646SBarry Smith extern PetscSegBuffer PetscCitationsList; 25961f817a21SBarry Smith #undef __FUNCT__ 25971f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 25981f817a21SBarry Smith /*@C 25991f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 26001f817a21SBarry Smith 26011f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 26021f817a21SBarry Smith 26031f817a21SBarry Smith Input Parameters: 26041f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 26051f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 26061f817a21SBarry Smith 2607850545d0SSatish Balay Level: intermediate 2608850545d0SSatish Balay 26091f817a21SBarry Smith Options Database: 26101f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 26111f817a21SBarry Smith @*/ 2612dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2613dff31646SBarry Smith { 2614dff31646SBarry Smith size_t len; 2615dff31646SBarry Smith char *vstring; 2616dff31646SBarry Smith PetscErrorCode ierr; 2617dff31646SBarry Smith 26181f817a21SBarry Smith PetscFunctionBegin; 26198d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2620dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2621dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2622dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2623dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26241f817a21SBarry Smith PetscFunctionReturn(0); 2625dff31646SBarry Smith } 2626dff31646SBarry Smith 2627dff31646SBarry Smith 2628d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2629d382aafbSBarry Smith #undef __FUNCT__ 2630d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2631d382aafbSBarry Smith 2632d382aafbSBarry Smith #endif 2633