1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ed938b00SJed Brown #if defined(__cplusplus) 44ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 45ed938b00SJed Brown #else 46ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 47ed938b00SJed Brown #endif 48ed938b00SJed Brown 49ed938b00SJed Brown #if defined(__cplusplus) 50ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 51ed938b00SJed Brown #else 52ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 53ed938b00SJed Brown #endif 54ed938b00SJed Brown 55ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 56014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 57014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 5821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 59014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 60014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 61014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 6221f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 63d382aafbSBarry Smith #else 64014dd563SJed Brown # define PETSC_DLLEXPORT 65014dd563SJed Brown # define PETSC_DLLIMPORT 6621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #endif 68014dd563SJed Brown 69014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 70014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 71014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 72014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 73014dd563SJed Brown #endif 74014dd563SJed Brown 752c280183SJed Brown #if defined(__cplusplus) 76014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 77638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 7821f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #else 80014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 81638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 826258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 83d382aafbSBarry Smith #endif 8427710113SBarry Smith 852c8e378dSBarry Smith #include <petscversion.h> 86301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 87d382aafbSBarry Smith 88d382aafbSBarry Smith /* ========================================================================== */ 89d382aafbSBarry Smith 90d382aafbSBarry Smith /* 91d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 92d382aafbSBarry Smith 93d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 94d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 95d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 96d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 97d382aafbSBarry Smith mpicxx.h directly in their code 98d382aafbSBarry Smith */ 99fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 100d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 101fa9e63e2SJed Brown #endif 102fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 103d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 104fa9e63e2SJed Brown #endif 1052c8e378dSBarry Smith #include <mpi.h> 10665013866SBarry Smith 107d382aafbSBarry Smith /* 1082981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 110d382aafbSBarry Smith */ 111d382aafbSBarry Smith #include <stdio.h> 112d382aafbSBarry Smith 113d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 114d382aafbSBarry Smith #if !defined(MPIAPI) 115d382aafbSBarry Smith #define MPIAPI 116d382aafbSBarry Smith #endif 117d382aafbSBarry Smith 118894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 119894dd566SJed Brown #if defined(__has_attribute) 120894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 121894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1228ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1238ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 124894dd566SJed Brown # endif 125894dd566SJed Brown #endif 126894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 127894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1288ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1298ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 130894dd566SJed Brown #endif 131b3506946SBarry Smith 132d382aafbSBarry Smith /*MC 133*1957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 134d382aafbSBarry Smith 135d382aafbSBarry Smith Level: beginner 136d382aafbSBarry Smith 137d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 138d382aafbSBarry Smith M*/ 139d382aafbSBarry Smith typedef int PetscErrorCode; 140d382aafbSBarry Smith 141d382aafbSBarry Smith /*MC 142d382aafbSBarry Smith 143503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 144d382aafbSBarry Smith 145*1957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 146*1957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 147*1957e957SBarry Smith 148*1957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 149*1957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 150*1957e957SBarry Smith 151*1957e957SBarry Smith Level: developer 152d382aafbSBarry Smith 1530700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 154d382aafbSBarry Smith M*/ 1550700a824SBarry Smith typedef int PetscClassId; 156d382aafbSBarry Smith 157d382aafbSBarry Smith 158d382aafbSBarry Smith /*MC 159d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 160d382aafbSBarry Smith 161d382aafbSBarry Smith Level: intermediate 162d382aafbSBarry Smith 163d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1643b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 165d382aafbSBarry Smith 1664dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1672981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 168d382aafbSBarry Smith 169d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 170d382aafbSBarry Smith 171d382aafbSBarry Smith M*/ 172d382aafbSBarry Smith typedef int PetscMPIInt; 173d382aafbSBarry Smith 174d382aafbSBarry Smith /*MC 175d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 176d382aafbSBarry Smith 177d382aafbSBarry Smith Level: intermediate 178d382aafbSBarry Smith 179d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 180d382aafbSBarry Smith M*/ 181d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 1825a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 183d382aafbSBarry Smith 184fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 185fab38c73SJed Brown #include <stdint.h> 186fab38c73SJed Brown #endif 187fab38c73SJed Brown 188d382aafbSBarry Smith /*MC 189d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1903b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 191d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 192d382aafbSBarry Smith 193d382aafbSBarry Smith Level: intermediate 194d382aafbSBarry Smith 195d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 196d382aafbSBarry Smith M*/ 197fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 198fab38c73SJed Brown typedef int64_t Petsc64bitInt; 199fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 200f505b413SSatish Balay typedef long long Petsc64bitInt; 201f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 202236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 203236ed0a3SSatish Balay #else 204f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 205236ed0a3SSatish Balay #endif 206d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 207236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 20841860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 209fab38c73SJed Brown # define MPIU_INT MPI_INT64_T 210fab38c73SJed Brown # else 211d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 212fab38c73SJed Brown # endif 213d382aafbSBarry Smith #else 214d382aafbSBarry Smith typedef int PetscInt; 215d382aafbSBarry Smith #define MPIU_INT MPI_INT 216d382aafbSBarry Smith #endif 217236ed0a3SSatish Balay 218d382aafbSBarry Smith 219702bc34aSSatish Balay /*MC 220702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 221702bc34aSSatish Balay 222702bc34aSSatish Balay Level: intermediate 223702bc34aSSatish Balay 224702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 225702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 226702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 227702bc34aSSatish Balay 228c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2292981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 230702bc34aSSatish Balay 2312981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 232702bc34aSSatish Balay if you run ./configure with the option 233702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2342981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2352981ebdbSBarry Smith 2362981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2372981ebdbSBarry Smith 2382981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 239702bc34aSSatish Balay 240702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 241702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 242702bc34aSSatish Balay 243702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 244702bc34aSSatish Balay 245702bc34aSSatish Balay M*/ 246702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 247702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 248702bc34aSSatish Balay #else 249702bc34aSSatish Balay typedef int PetscBLASInt; 250702bc34aSSatish Balay #endif 251702bc34aSSatish Balay 25258b60935SBarry Smith /*EC 25358b60935SBarry Smith 2542981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 25558b60935SBarry Smith 25658b60935SBarry Smith Level: advanced 25758b60935SBarry Smith 25858b60935SBarry Smith .seealso: PetscObjectSetPrecision() 25958b60935SBarry Smith E*/ 26058b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 261014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 26258b60935SBarry Smith 263503cfb0cSBarry Smith /* 264503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 265503cfb0cSBarry Smith */ 266d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 267adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 268d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 269adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 270d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 271adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 272d382aafbSBarry Smith #else 273d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 274d382aafbSBarry Smith #endif 275d382aafbSBarry Smith 276d382aafbSBarry Smith 277d382aafbSBarry Smith /* 278d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 279d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 280d382aafbSBarry Smith */ 281014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 282d382aafbSBarry Smith 283d382aafbSBarry Smith /* 284d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 285d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 286d382aafbSBarry Smith */ 287014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 288d382aafbSBarry Smith 289d382aafbSBarry Smith /*MC 290d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 291d382aafbSBarry Smith 292d382aafbSBarry Smith Synopsis: 293aaa7dc30SBarry Smith #include <petscsys.h> 294ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 295d382aafbSBarry Smith 296eca87e8dSBarry Smith Not Collective 297eca87e8dSBarry Smith 298d382aafbSBarry Smith Input Parameters: 299d382aafbSBarry Smith . cond - condition or expression 300d382aafbSBarry Smith 301d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 302d382aafbSBarry Smith branch is unlikely. 303d382aafbSBarry Smith 304d382aafbSBarry Smith Level: advanced 305d382aafbSBarry Smith 306d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 307d382aafbSBarry Smith M*/ 308d382aafbSBarry Smith 309d382aafbSBarry Smith /*MC 310d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 311d382aafbSBarry Smith 312d382aafbSBarry Smith Synopsis: 313aaa7dc30SBarry Smith #include <petscsys.h> 314ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 315d382aafbSBarry Smith 316eca87e8dSBarry Smith Not Collective 317eca87e8dSBarry Smith 318d382aafbSBarry Smith Input Parameters: 319d382aafbSBarry Smith . cond - condition or expression 320d382aafbSBarry Smith 321d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 322d382aafbSBarry Smith branch is likely. 323d382aafbSBarry Smith 324d382aafbSBarry Smith Level: advanced 325d382aafbSBarry Smith 326d382aafbSBarry Smith .seealso: PetscUnlikely() 327d382aafbSBarry Smith M*/ 328d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 329d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 330d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 331d382aafbSBarry Smith #else 332cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 333cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 334d382aafbSBarry Smith #endif 335d382aafbSBarry Smith 336d382aafbSBarry Smith /* 337d382aafbSBarry Smith Declare extern C stuff after including external header files 338d382aafbSBarry Smith */ 339d382aafbSBarry Smith 340d382aafbSBarry Smith 341d382aafbSBarry Smith /* 342d382aafbSBarry Smith Basic PETSc constants 343d382aafbSBarry Smith */ 344d382aafbSBarry Smith 345d382aafbSBarry Smith /*E 346ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 347d382aafbSBarry Smith 348d382aafbSBarry Smith Level: beginner 349d382aafbSBarry Smith 350ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 35134e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 35234e82e7dSBarry Smith 353d382aafbSBarry Smith E*/ 354ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3556a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3565a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 35770b3c8c7SBarry Smith 3588b49ba18SBarry Smith /* 3598b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 3608b49ba18SBarry Smith */ 3618b49ba18SBarry Smith #include <petscmath.h> 3628b49ba18SBarry Smith 36370b3c8c7SBarry Smith /*E 36470b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 36570b3c8c7SBarry Smith 36670b3c8c7SBarry Smith Level: beginner 36770b3c8c7SBarry Smith 36870b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 36970b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 37070b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 37170b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 37270b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 37370b3c8c7SBarry Smith 37470b3c8c7SBarry Smith E*/ 37570b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3766a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 377d382aafbSBarry Smith 378d382aafbSBarry Smith /*MC 379ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 380d382aafbSBarry Smith 381d382aafbSBarry Smith Level: beginner 382d382aafbSBarry Smith 383d382aafbSBarry Smith Note: Zero integer 384d382aafbSBarry Smith 385ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 386d382aafbSBarry Smith M*/ 387d382aafbSBarry Smith 388d382aafbSBarry Smith /*MC 389ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 390d382aafbSBarry Smith 391d382aafbSBarry Smith Level: beginner 392d382aafbSBarry Smith 393d382aafbSBarry Smith Note: Nonzero integer 394d382aafbSBarry Smith 395ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 396d382aafbSBarry Smith M*/ 397d382aafbSBarry Smith 398d382aafbSBarry Smith /*MC 3990298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 400d382aafbSBarry Smith 401d382aafbSBarry Smith Level: beginner 402d382aafbSBarry Smith 403d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 404d382aafbSBarry Smith some default 405d382aafbSBarry Smith 406d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 407503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 408d382aafbSBarry Smith 409d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 410d382aafbSBarry Smith 411d382aafbSBarry Smith M*/ 4123bcbec90SJed Brown #define PETSC_NULL NULL 413d382aafbSBarry Smith 414d382aafbSBarry Smith /*MC 4150298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 416d382aafbSBarry Smith 417d382aafbSBarry Smith Level: beginner 418d382aafbSBarry Smith 419d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 420d382aafbSBarry Smith some default 421d382aafbSBarry Smith 422d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 423d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 424d382aafbSBarry Smith 425d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 426d382aafbSBarry Smith 427d382aafbSBarry Smith M*/ 4280298fd71SBarry Smith #define PETSC_IGNORE NULL 429d382aafbSBarry Smith 430d382aafbSBarry Smith /*MC 431557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 432557d4da8SBarry Smith where you wish PETSc to use the default. 433557d4da8SBarry Smith 434557d4da8SBarry Smith Level: beginner 435557d4da8SBarry Smith 436557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 437557d4da8SBarry Smith 438557d4da8SBarry Smith M*/ 439557d4da8SBarry Smith #define PETSC_DECIDE -1 440557d4da8SBarry Smith 441557d4da8SBarry Smith /*MC 442d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 443d382aafbSBarry Smith where you wish PETSc to compute the required value. 444d382aafbSBarry Smith 445d382aafbSBarry Smith Level: beginner 446d382aafbSBarry Smith 447557d4da8SBarry Smith 448557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 449557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 450557d4da8SBarry Smith 4510298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 452d382aafbSBarry Smith 453d382aafbSBarry Smith M*/ 454d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 455d382aafbSBarry Smith 456d382aafbSBarry Smith /*MC 457557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 458557d4da8SBarry Smith where you wish PETSc to use the default. 459557d4da8SBarry Smith 460557d4da8SBarry Smith Level: beginner 461557d4da8SBarry Smith 4622d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 463557d4da8SBarry Smith 4640298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 465557d4da8SBarry Smith 466557d4da8SBarry Smith M*/ 467557d4da8SBarry Smith #define PETSC_DEFAULT -2 468557d4da8SBarry Smith 469557d4da8SBarry Smith /*MC 470d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 471d382aafbSBarry Smith all the processs that PETSc knows about. 472d382aafbSBarry Smith 473d382aafbSBarry Smith Level: beginner 474d382aafbSBarry Smith 475d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 476d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 477d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 478d382aafbSBarry Smith PetscInitialize() 479d382aafbSBarry Smith 480d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 481d382aafbSBarry Smith 482d382aafbSBarry Smith M*/ 483014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 484d382aafbSBarry Smith 485d382aafbSBarry Smith /*MC 486503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 487d382aafbSBarry Smith 488d382aafbSBarry Smith Level: beginner 489d382aafbSBarry Smith 490d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 491d382aafbSBarry Smith 492d382aafbSBarry Smith M*/ 493d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 494d382aafbSBarry Smith 495d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 496014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 497014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 498014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 4994cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 500d382aafbSBarry Smith 501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 502014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 504d382aafbSBarry Smith 505d382aafbSBarry Smith /*MC 506d382aafbSBarry Smith PetscMalloc - Allocates memory 507d382aafbSBarry Smith 508eca87e8dSBarry Smith Synopsis: 509aaa7dc30SBarry Smith #include <petscsys.h> 510eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 511eca87e8dSBarry Smith 512eca87e8dSBarry Smith Not Collective 513eca87e8dSBarry Smith 514d382aafbSBarry Smith Input Parameter: 515d382aafbSBarry Smith . m - number of bytes to allocate 516d382aafbSBarry Smith 517d382aafbSBarry Smith Output Parameter: 518d382aafbSBarry Smith . result - memory allocated 519d382aafbSBarry Smith 520d382aafbSBarry Smith Level: beginner 521d382aafbSBarry Smith 522d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 523d382aafbSBarry Smith 524d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 525d382aafbSBarry Smith properly handle not freeing the null pointer. 526d382aafbSBarry Smith 527d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 528d382aafbSBarry Smith 529d382aafbSBarry Smith Concepts: memory allocation 530d382aafbSBarry Smith 531d382aafbSBarry Smith M*/ 532efca3c55SSatish Balay #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b)) : (*(b) = 0,0) ) 533d382aafbSBarry Smith 534d382aafbSBarry Smith /*MC 535503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 536d382aafbSBarry Smith 537d382aafbSBarry Smith Synopsis: 538aaa7dc30SBarry Smith #include <petscsys.h> 539d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 540d382aafbSBarry Smith 541eca87e8dSBarry Smith Not Collective 542eca87e8dSBarry Smith 543eca87e8dSBarry Smith Input Parameters: 544eca87e8dSBarry Smith . addr - address to align (any pointer type) 545eca87e8dSBarry Smith 546d382aafbSBarry Smith Level: developer 547d382aafbSBarry Smith 548d382aafbSBarry Smith .seealso: PetscMallocAlign() 549d382aafbSBarry Smith 550d382aafbSBarry Smith Concepts: memory allocation 551d382aafbSBarry Smith M*/ 552d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 553d382aafbSBarry Smith 554d382aafbSBarry Smith /*MC 555785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 556d382aafbSBarry Smith 557eca87e8dSBarry Smith Synopsis: 558aaa7dc30SBarry Smith #include <petscsys.h> 559785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 560785e854fSJed Brown 561785e854fSJed Brown Not Collective 562785e854fSJed Brown 563785e854fSJed Brown Input Parameter: 564785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 565785e854fSJed Brown 566785e854fSJed Brown Output Parameter: 567785e854fSJed Brown . r1 - memory allocated in first chunk 568785e854fSJed Brown 569785e854fSJed Brown Level: developer 570785e854fSJed Brown 5711795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 572785e854fSJed Brown 573785e854fSJed Brown Concepts: memory allocation 574785e854fSJed Brown 575785e854fSJed Brown M*/ 576785e854fSJed Brown #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 577785e854fSJed Brown 578785e854fSJed Brown /*MC 5791795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 5801795a4d1SJed Brown 5811795a4d1SJed Brown Synopsis: 582aaa7dc30SBarry Smith #include <petscsys.h> 5831795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 5841795a4d1SJed Brown 5851795a4d1SJed Brown Not Collective 5861795a4d1SJed Brown 5871795a4d1SJed Brown Input Parameter: 5881795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 5891795a4d1SJed Brown 5901795a4d1SJed Brown Output Parameter: 5911795a4d1SJed Brown . r1 - memory allocated in first chunk 5921795a4d1SJed Brown 5931795a4d1SJed Brown Level: developer 5941795a4d1SJed Brown 5951795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 5961795a4d1SJed Brown 5971795a4d1SJed Brown Concepts: memory allocation 5981795a4d1SJed Brown 5991795a4d1SJed Brown M*/ 6001795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6011795a4d1SJed Brown 6021795a4d1SJed Brown /*MC 603dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 604d382aafbSBarry Smith 605eca87e8dSBarry Smith Synopsis: 606aaa7dc30SBarry Smith #include <petscsys.h> 607dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 608eca87e8dSBarry Smith 609eca87e8dSBarry Smith Not Collective 610eca87e8dSBarry Smith 611d382aafbSBarry Smith Input Parameter: 612d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 613dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 614d382aafbSBarry Smith 615d382aafbSBarry Smith Output Parameter: 616d382aafbSBarry Smith + r1 - memory allocated in first chunk 617d382aafbSBarry Smith - r2 - memory allocated in second chunk 618d382aafbSBarry Smith 619d382aafbSBarry Smith Level: developer 620d382aafbSBarry Smith 6211795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 622d382aafbSBarry Smith 623d382aafbSBarry Smith Concepts: memory allocation 624d382aafbSBarry Smith 625d382aafbSBarry Smith M*/ 626d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 627dcca6d9dSJed Brown #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2)) 628d382aafbSBarry Smith #else 629ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 630ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6313589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 632d382aafbSBarry Smith #endif 633d382aafbSBarry Smith 634d382aafbSBarry Smith /*MC 6351795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 636d382aafbSBarry Smith 637eca87e8dSBarry Smith Synopsis: 638aaa7dc30SBarry Smith #include <petscsys.h> 6391795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 640eca87e8dSBarry Smith 641eca87e8dSBarry Smith Not Collective 642eca87e8dSBarry Smith 643d382aafbSBarry Smith Input Parameter: 644d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6451795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6461795a4d1SJed Brown 6471795a4d1SJed Brown Output Parameter: 6481795a4d1SJed Brown + r1 - memory allocated in first chunk 6491795a4d1SJed Brown - r2 - memory allocated in second chunk 6501795a4d1SJed Brown 6511795a4d1SJed Brown Level: developer 6521795a4d1SJed Brown 6531795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 6541795a4d1SJed Brown 6551795a4d1SJed Brown Concepts: memory allocation 6561795a4d1SJed Brown M*/ 6571795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 6581795a4d1SJed Brown 6591795a4d1SJed Brown /*MC 660dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 661d382aafbSBarry Smith 662d382aafbSBarry Smith Synopsis: 663aaa7dc30SBarry Smith #include <petscsys.h> 664dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 665d382aafbSBarry Smith 666d382aafbSBarry Smith Not Collective 667d382aafbSBarry Smith 668d382aafbSBarry Smith Input Parameter: 669d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 670d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 671dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 672d382aafbSBarry Smith 673d382aafbSBarry Smith Output Parameter: 674d382aafbSBarry Smith + r1 - memory allocated in first chunk 675d382aafbSBarry Smith . r2 - memory allocated in second chunk 676d382aafbSBarry Smith - r3 - memory allocated in third chunk 677d382aafbSBarry Smith 678d382aafbSBarry Smith Level: developer 679d382aafbSBarry Smith 6801795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 681d382aafbSBarry Smith 682d382aafbSBarry Smith Concepts: memory allocation 683d382aafbSBarry Smith 684d382aafbSBarry Smith M*/ 685d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 686dcca6d9dSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3)) 687d382aafbSBarry Smith #else 688ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 689278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 6903589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 691d382aafbSBarry Smith #endif 692d382aafbSBarry Smith 693d382aafbSBarry Smith /*MC 6941795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 695d382aafbSBarry Smith 696eca87e8dSBarry Smith Synopsis: 697aaa7dc30SBarry Smith #include <petscsys.h> 6981795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 699eca87e8dSBarry Smith 700eca87e8dSBarry Smith Not Collective 701eca87e8dSBarry Smith 702d382aafbSBarry Smith Input Parameter: 703d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 704d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7051795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7061795a4d1SJed Brown 7071795a4d1SJed Brown Output Parameter: 7081795a4d1SJed Brown + r1 - memory allocated in first chunk 7091795a4d1SJed Brown . r2 - memory allocated in second chunk 7101795a4d1SJed Brown - r3 - memory allocated in third chunk 7111795a4d1SJed Brown 7121795a4d1SJed Brown Level: developer 7131795a4d1SJed Brown 7141795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7151795a4d1SJed Brown 7161795a4d1SJed Brown Concepts: memory allocation 7171795a4d1SJed Brown M*/ 7181795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7191795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7201795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7211795a4d1SJed Brown 7221795a4d1SJed Brown /*MC 723dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 724d382aafbSBarry Smith 725d382aafbSBarry Smith Synopsis: 726aaa7dc30SBarry Smith #include <petscsys.h> 727dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 728d382aafbSBarry Smith 729d382aafbSBarry Smith Not Collective 730d382aafbSBarry Smith 731d382aafbSBarry Smith Input Parameter: 732d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 733d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 734d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 735dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 736d382aafbSBarry Smith 737d382aafbSBarry Smith Output Parameter: 738d382aafbSBarry Smith + r1 - memory allocated in first chunk 739d382aafbSBarry Smith . r2 - memory allocated in second chunk 740d382aafbSBarry Smith . r3 - memory allocated in third chunk 741d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 742d382aafbSBarry Smith 743d382aafbSBarry Smith Level: developer 744d382aafbSBarry Smith 7451795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 746d382aafbSBarry Smith 747d382aafbSBarry Smith Concepts: memory allocation 748d382aafbSBarry Smith 749d382aafbSBarry Smith M*/ 750d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 751dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4)) 752d382aafbSBarry Smith #else 753dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 754ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 755278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 7563589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 757d382aafbSBarry Smith #endif 758d382aafbSBarry Smith 759d382aafbSBarry Smith /*MC 7601795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 761d382aafbSBarry Smith 762eca87e8dSBarry Smith Synopsis: 763aaa7dc30SBarry Smith #include <petscsys.h> 7641795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 765eca87e8dSBarry Smith 766eca87e8dSBarry Smith Not Collective 767eca87e8dSBarry Smith 768d382aafbSBarry Smith Input Parameter: 769d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 770d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 771d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 7721795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 7731795a4d1SJed Brown 7741795a4d1SJed Brown Output Parameter: 7751795a4d1SJed Brown + r1 - memory allocated in first chunk 7761795a4d1SJed Brown . r2 - memory allocated in second chunk 7771795a4d1SJed Brown . r3 - memory allocated in third chunk 7781795a4d1SJed Brown - r4 - memory allocated in fourth chunk 7791795a4d1SJed Brown 7801795a4d1SJed Brown Level: developer 7811795a4d1SJed Brown 7821795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 7831795a4d1SJed Brown 7841795a4d1SJed Brown Concepts: memory allocation 7851795a4d1SJed Brown 7861795a4d1SJed Brown M*/ 7871795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 7881795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 7891795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 7901795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 7911795a4d1SJed Brown 7921795a4d1SJed Brown /*MC 793dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 794d382aafbSBarry Smith 795d382aafbSBarry Smith Synopsis: 796aaa7dc30SBarry Smith #include <petscsys.h> 797dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 798d382aafbSBarry Smith 799d382aafbSBarry Smith Not Collective 800d382aafbSBarry Smith 801d382aafbSBarry Smith Input Parameter: 802d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 803d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 804d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 805d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 806dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 807d382aafbSBarry Smith 808d382aafbSBarry Smith Output Parameter: 809d382aafbSBarry Smith + r1 - memory allocated in first chunk 810d382aafbSBarry Smith . r2 - memory allocated in second chunk 811d382aafbSBarry Smith . r3 - memory allocated in third chunk 812d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 813d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 814d382aafbSBarry Smith 815d382aafbSBarry Smith Level: developer 816d382aafbSBarry Smith 8171795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 818d382aafbSBarry Smith 819d382aafbSBarry Smith Concepts: memory allocation 820d382aafbSBarry Smith 821d382aafbSBarry Smith M*/ 822d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 823dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5)) 824d382aafbSBarry Smith #else 825dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 826ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 827278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8283589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 829d382aafbSBarry Smith #endif 830d382aafbSBarry Smith 831d382aafbSBarry Smith /*MC 8321795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 833d382aafbSBarry Smith 834eca87e8dSBarry Smith Synopsis: 835aaa7dc30SBarry Smith #include <petscsys.h> 8361795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 837eca87e8dSBarry Smith 838eca87e8dSBarry Smith Not Collective 839eca87e8dSBarry Smith 840d382aafbSBarry Smith Input Parameter: 841d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 842d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 843d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 844d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 8451795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8461795a4d1SJed Brown 8471795a4d1SJed Brown Output Parameter: 8481795a4d1SJed Brown + r1 - memory allocated in first chunk 8491795a4d1SJed Brown . r2 - memory allocated in second chunk 8501795a4d1SJed Brown . r3 - memory allocated in third chunk 8511795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8521795a4d1SJed Brown - r5 - memory allocated in fifth chunk 8531795a4d1SJed Brown 8541795a4d1SJed Brown Level: developer 8551795a4d1SJed Brown 8561795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 8571795a4d1SJed Brown 8581795a4d1SJed Brown Concepts: memory allocation 8591795a4d1SJed Brown 8601795a4d1SJed Brown M*/ 8611795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8621795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8631795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8641795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 865d382aafbSBarry Smith 866d382aafbSBarry Smith /*MC 867dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 868d382aafbSBarry Smith 869d382aafbSBarry Smith Synopsis: 870aaa7dc30SBarry Smith #include <petscsys.h> 871dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 872d382aafbSBarry Smith 873d382aafbSBarry Smith Not Collective 874d382aafbSBarry Smith 875d382aafbSBarry Smith Input Parameter: 876d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 877d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 878d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 879d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 880d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 881dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 882d382aafbSBarry Smith 883d382aafbSBarry Smith Output Parameter: 884d382aafbSBarry Smith + r1 - memory allocated in first chunk 885d382aafbSBarry Smith . r2 - memory allocated in second chunk 886d382aafbSBarry Smith . r3 - memory allocated in third chunk 887d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 888d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 889d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 890d382aafbSBarry Smith 891d382aafbSBarry Smith Level: developer 892d382aafbSBarry Smith 8931795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 894d382aafbSBarry Smith 895d382aafbSBarry Smith Concepts: memory allocation 896d382aafbSBarry Smith 897d382aafbSBarry Smith M*/ 898d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 899dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6)) 900d382aafbSBarry Smith #else 901dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 902ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 903278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9043589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 905d382aafbSBarry Smith #endif 906d382aafbSBarry Smith 907d382aafbSBarry Smith /*MC 9081795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 909d382aafbSBarry Smith 910eca87e8dSBarry Smith Synopsis: 911aaa7dc30SBarry Smith #include <petscsys.h> 9121795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 913eca87e8dSBarry Smith 914eca87e8dSBarry Smith Not Collective 915eca87e8dSBarry Smith 916d382aafbSBarry Smith Input Parameter: 917d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 918d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 919d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 920d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 921d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9221795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9231795a4d1SJed Brown 9241795a4d1SJed Brown Output Parameter: 9251795a4d1SJed Brown + r1 - memory allocated in first chunk 9261795a4d1SJed Brown . r2 - memory allocated in second chunk 9271795a4d1SJed Brown . r3 - memory allocated in third chunk 9281795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9291795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9301795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9311795a4d1SJed Brown 9321795a4d1SJed Brown Level: developer 9331795a4d1SJed Brown 9341795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9351795a4d1SJed Brown 9361795a4d1SJed Brown Concepts: memory allocation 9371795a4d1SJed Brown M*/ 9381795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9391795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9401795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9411795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9421795a4d1SJed Brown 9431795a4d1SJed Brown /*MC 944dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 945d382aafbSBarry Smith 946d382aafbSBarry Smith Synopsis: 947aaa7dc30SBarry Smith #include <petscsys.h> 948dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 949d382aafbSBarry Smith 950d382aafbSBarry Smith Not Collective 951d382aafbSBarry Smith 952d382aafbSBarry Smith Input Parameter: 953d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 954d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 955d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 956d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 957d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 958d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 959dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 960d382aafbSBarry Smith 961d382aafbSBarry Smith Output Parameter: 962d382aafbSBarry Smith + r1 - memory allocated in first chunk 963d382aafbSBarry Smith . r2 - memory allocated in second chunk 964d382aafbSBarry Smith . r3 - memory allocated in third chunk 965d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 966d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 967d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 968eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 969d382aafbSBarry Smith 970d382aafbSBarry Smith Level: developer 971d382aafbSBarry Smith 9721795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 973d382aafbSBarry Smith 974d382aafbSBarry Smith Concepts: memory allocation 975d382aafbSBarry Smith 976d382aafbSBarry Smith M*/ 977d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 978dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6) || PetscMalloc((m7)*sizeof(**(r7)),r7)) 979d382aafbSBarry Smith #else 980dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 981ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 982278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 9833589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 984d382aafbSBarry Smith #endif 985d382aafbSBarry Smith 986d382aafbSBarry Smith /*MC 9871795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 9881795a4d1SJed Brown 9891795a4d1SJed Brown Synopsis: 990aaa7dc30SBarry Smith #include <petscsys.h> 9911795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 9921795a4d1SJed Brown 9931795a4d1SJed Brown Not Collective 9941795a4d1SJed Brown 9951795a4d1SJed Brown Input Parameter: 9961795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 9971795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 9981795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 9991795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10001795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10011795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10021795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10031795a4d1SJed Brown 10041795a4d1SJed Brown Output Parameter: 10051795a4d1SJed Brown + r1 - memory allocated in first chunk 10061795a4d1SJed Brown . r2 - memory allocated in second chunk 10071795a4d1SJed Brown . r3 - memory allocated in third chunk 10081795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10091795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10101795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10111795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10121795a4d1SJed Brown 10131795a4d1SJed Brown Level: developer 10141795a4d1SJed Brown 10151795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10161795a4d1SJed Brown 10171795a4d1SJed Brown Concepts: memory allocation 10181795a4d1SJed Brown M*/ 10191795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10207ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10211795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10221795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10237ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10241795a4d1SJed Brown 10251795a4d1SJed Brown /*MC 1026503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1027d382aafbSBarry Smith 1028eca87e8dSBarry Smith Synopsis: 1029aaa7dc30SBarry Smith #include <petscsys.h> 1030b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1031eca87e8dSBarry Smith 1032eca87e8dSBarry Smith Not Collective 1033eca87e8dSBarry Smith 1034d382aafbSBarry Smith Output Parameter: 1035b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1036d382aafbSBarry Smith 1037d382aafbSBarry Smith Level: beginner 1038d382aafbSBarry Smith 1039ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1040d382aafbSBarry Smith 1041d382aafbSBarry Smith Concepts: memory allocation 1042d382aafbSBarry Smith 1043d382aafbSBarry Smith M*/ 1044b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1045ad0619ddSBarry Smith 1046ad0619ddSBarry Smith /*MC 1047b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1048ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1049ad0619ddSBarry Smith 1050ad0619ddSBarry Smith Synopsis: 1051aaa7dc30SBarry Smith #include <petscsys.h> 1052b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1053ad0619ddSBarry Smith 1054ad0619ddSBarry Smith Not Collective 1055ad0619ddSBarry Smith 1056ad0619ddSBarry Smith Input Parameter: 1057b00a9115SJed Brown . obj - object memory is logged to 1058ad0619ddSBarry Smith 1059ad0619ddSBarry Smith Output Parameter: 1060b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1061ad0619ddSBarry Smith 1062ad0619ddSBarry Smith Level: developer 1063ad0619ddSBarry Smith 1064ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1065ad0619ddSBarry Smith 1066ad0619ddSBarry Smith Concepts: memory allocation 1067ad0619ddSBarry Smith 1068ad0619ddSBarry Smith M*/ 1069b00a9115SJed Brown #define PetscNewLog(o,b) (PetscNew((b)) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(**(b))) : 0)) 1070d382aafbSBarry Smith 1071d382aafbSBarry Smith /*MC 1072d382aafbSBarry Smith PetscFree - Frees memory 1073d382aafbSBarry Smith 1074eca87e8dSBarry Smith Synopsis: 1075aaa7dc30SBarry Smith #include <petscsys.h> 1076eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1077eca87e8dSBarry Smith 1078eca87e8dSBarry Smith Not Collective 1079eca87e8dSBarry Smith 1080d382aafbSBarry Smith Input Parameter: 1081d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith Level: beginner 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1088d382aafbSBarry Smith 1089d382aafbSBarry Smith Concepts: memory allocation 1090d382aafbSBarry Smith 1091d382aafbSBarry Smith M*/ 1092efca3c55SSatish Balay #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0))) 1093d382aafbSBarry Smith 1094d382aafbSBarry Smith /*MC 1095d382aafbSBarry Smith PetscFreeVoid - Frees memory 1096d382aafbSBarry Smith 1097d382aafbSBarry Smith Synopsis: 1098aaa7dc30SBarry Smith #include <petscsys.h> 1099d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1100d382aafbSBarry Smith 1101eca87e8dSBarry Smith Not Collective 1102eca87e8dSBarry Smith 1103eca87e8dSBarry Smith Input Parameter: 1104eca87e8dSBarry Smith . memory - memory to free 1105eca87e8dSBarry Smith 1106d382aafbSBarry Smith Level: beginner 1107d382aafbSBarry Smith 1108d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1109d382aafbSBarry Smith 1110d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1111d382aafbSBarry Smith 1112d382aafbSBarry Smith Concepts: memory allocation 1113d382aafbSBarry Smith 1114d382aafbSBarry Smith M*/ 1115efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1116d382aafbSBarry Smith 1117d382aafbSBarry Smith 1118d382aafbSBarry Smith /*MC 1119d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1120d382aafbSBarry Smith 1121eca87e8dSBarry Smith Synopsis: 1122aaa7dc30SBarry Smith #include <petscsys.h> 1123eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1124eca87e8dSBarry Smith 1125eca87e8dSBarry Smith Not Collective 1126eca87e8dSBarry Smith 1127d382aafbSBarry Smith Input Parameter: 1128d382aafbSBarry Smith + memory1 - memory to free 1129d382aafbSBarry Smith - memory2 - 2nd memory to free 1130d382aafbSBarry Smith 1131d382aafbSBarry Smith Level: developer 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1134d382aafbSBarry Smith 1135d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith Concepts: memory allocation 1138d382aafbSBarry Smith 1139d382aafbSBarry Smith M*/ 1140d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1141d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1142d382aafbSBarry Smith #else 1143e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1144d382aafbSBarry Smith #endif 1145d382aafbSBarry Smith 1146d382aafbSBarry Smith /*MC 1147d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1148d382aafbSBarry Smith 1149eca87e8dSBarry Smith Synopsis: 1150aaa7dc30SBarry Smith #include <petscsys.h> 1151eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1152eca87e8dSBarry Smith 1153eca87e8dSBarry Smith Not Collective 1154eca87e8dSBarry Smith 1155d382aafbSBarry Smith Input Parameter: 1156d382aafbSBarry Smith + memory1 - memory to free 1157d382aafbSBarry Smith . memory2 - 2nd memory to free 1158d382aafbSBarry Smith - memory3 - 3rd memory to free 1159d382aafbSBarry Smith 1160d382aafbSBarry Smith Level: developer 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1163d382aafbSBarry Smith 1164d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1165d382aafbSBarry Smith 1166d382aafbSBarry Smith Concepts: memory allocation 1167d382aafbSBarry Smith 1168d382aafbSBarry Smith M*/ 1169d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1170d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1171d382aafbSBarry Smith #else 1172e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1173d382aafbSBarry Smith #endif 1174d382aafbSBarry Smith 1175d382aafbSBarry Smith /*MC 1176d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1177d382aafbSBarry Smith 1178eca87e8dSBarry Smith Synopsis: 1179aaa7dc30SBarry Smith #include <petscsys.h> 1180eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1181eca87e8dSBarry Smith 1182eca87e8dSBarry Smith Not Collective 1183eca87e8dSBarry Smith 1184d382aafbSBarry Smith Input Parameter: 1185d382aafbSBarry Smith + m1 - memory to free 1186d382aafbSBarry Smith . m2 - 2nd memory to free 1187d382aafbSBarry Smith . m3 - 3rd memory to free 1188d382aafbSBarry Smith - m4 - 4th memory to free 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith Level: developer 1191d382aafbSBarry Smith 1192d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1193d382aafbSBarry Smith 1194d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1195d382aafbSBarry Smith 1196d382aafbSBarry Smith Concepts: memory allocation 1197d382aafbSBarry Smith 1198d382aafbSBarry Smith M*/ 1199d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1200d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1201d382aafbSBarry Smith #else 1202e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1203d382aafbSBarry Smith #endif 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith /*MC 1206d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1207d382aafbSBarry Smith 1208eca87e8dSBarry Smith Synopsis: 1209aaa7dc30SBarry Smith #include <petscsys.h> 1210eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1211eca87e8dSBarry Smith 1212eca87e8dSBarry Smith Not Collective 1213eca87e8dSBarry Smith 1214d382aafbSBarry Smith Input Parameter: 1215d382aafbSBarry Smith + m1 - memory to free 1216d382aafbSBarry Smith . m2 - 2nd memory to free 1217d382aafbSBarry Smith . m3 - 3rd memory to free 1218d382aafbSBarry Smith . m4 - 4th memory to free 1219d382aafbSBarry Smith - m5 - 5th memory to free 1220d382aafbSBarry Smith 1221d382aafbSBarry Smith Level: developer 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith Concepts: memory allocation 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith M*/ 1230d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1231d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1232d382aafbSBarry Smith #else 1233e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1234e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1235d382aafbSBarry Smith #endif 1236d382aafbSBarry Smith 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith /*MC 1239d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1240d382aafbSBarry Smith 1241eca87e8dSBarry Smith Synopsis: 1242aaa7dc30SBarry Smith #include <petscsys.h> 1243eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1244eca87e8dSBarry Smith 1245eca87e8dSBarry Smith Not Collective 1246eca87e8dSBarry Smith 1247d382aafbSBarry Smith Input Parameter: 1248d382aafbSBarry Smith + m1 - memory to free 1249d382aafbSBarry Smith . m2 - 2nd memory to free 1250d382aafbSBarry Smith . m3 - 3rd memory to free 1251d382aafbSBarry Smith . m4 - 4th memory to free 1252d382aafbSBarry Smith . m5 - 5th memory to free 1253d382aafbSBarry Smith - m6 - 6th memory to free 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith Level: developer 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith Concepts: memory allocation 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith M*/ 1265d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1266d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1267d382aafbSBarry Smith #else 1268e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1269e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1270e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1271d382aafbSBarry Smith #endif 1272d382aafbSBarry Smith 1273d382aafbSBarry Smith /*MC 1274d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1275d382aafbSBarry Smith 1276eca87e8dSBarry Smith Synopsis: 1277aaa7dc30SBarry Smith #include <petscsys.h> 1278eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1279eca87e8dSBarry Smith 1280eca87e8dSBarry Smith Not Collective 1281eca87e8dSBarry Smith 1282d382aafbSBarry Smith Input Parameter: 1283d382aafbSBarry Smith + m1 - memory to free 1284d382aafbSBarry Smith . m2 - 2nd memory to free 1285d382aafbSBarry Smith . m3 - 3rd memory to free 1286d382aafbSBarry Smith . m4 - 4th memory to free 1287d382aafbSBarry Smith . m5 - 5th memory to free 1288d382aafbSBarry Smith . m6 - 6th memory to free 1289d382aafbSBarry Smith - m7 - 7th memory to free 1290d382aafbSBarry Smith 1291d382aafbSBarry Smith 1292d382aafbSBarry Smith Level: developer 1293d382aafbSBarry Smith 1294d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1297d382aafbSBarry Smith PetscMalloc7() 1298d382aafbSBarry Smith 1299d382aafbSBarry Smith Concepts: memory allocation 1300d382aafbSBarry Smith 1301d382aafbSBarry Smith M*/ 1302d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1303d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1304d382aafbSBarry Smith #else 1305e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1306e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 130706c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1308e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1309d382aafbSBarry Smith #endif 1310d382aafbSBarry Smith 1311efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1312efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1313efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith /* 1317a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1318a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1319a5057860SBarry Smith timing etc. 1320a5057860SBarry Smith */ 1321a5057860SBarry Smith typedef double PetscLogDouble; 1322a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1323a5057860SBarry Smith 1324a5057860SBarry Smith /* 132566d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1326d382aafbSBarry Smith */ 1327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13320acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1333efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1335574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith /*E 1339d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1340d382aafbSBarry Smith 1341d382aafbSBarry Smith Level: beginner 1342d382aafbSBarry Smith 1343d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1346d382aafbSBarry Smith PetscDataTypeGetSize() 1347d382aafbSBarry Smith 1348d382aafbSBarry Smith E*/ 1349d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13502d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 13516a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1352d382aafbSBarry Smith 1353d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1354d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1355d382aafbSBarry Smith #else 1356ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1357d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 135859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 135959a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1360d382aafbSBarry Smith #else 1361d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1362d382aafbSBarry Smith #endif 1363d382aafbSBarry Smith #endif 1364ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1365d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 136659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 136759a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1368d382aafbSBarry Smith #else 1369d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1370d382aafbSBarry Smith #endif 1371d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1372d382aafbSBarry Smith 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 13768e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1377d382aafbSBarry Smith 1378d382aafbSBarry Smith /* 1379d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1380d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1381d382aafbSBarry Smith functionality and/or error checking. 1382d382aafbSBarry Smith */ 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1387d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 13992f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14042c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 140747340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14086fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1410d382aafbSBarry Smith 1411573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1412573b0fb4SBarry Smith 1413d382aafbSBarry Smith /*S 1414d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1415d382aafbSBarry Smith 1416d382aafbSBarry Smith Level: intermediate 1417d382aafbSBarry Smith 1418d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1419d382aafbSBarry Smith S*/ 1420d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1421d382aafbSBarry Smith 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1425d382aafbSBarry Smith 1426a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1427a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1428a53986e1SJed Brown 1429d382aafbSBarry Smith /* 1430d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1431d382aafbSBarry Smith */ 1432014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14337c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1434014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14352414b3c7SJed Brown #else 14362414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14372414b3c7SJed Brown #endif 14382414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1439014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1440014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1441d9822059SBarry Smith #else 1442d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1443d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1444d9822059SBarry Smith #endif 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1446d382aafbSBarry Smith 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1449eb3f98d2SBarry Smith 1450d382aafbSBarry Smith /*S 1451d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1452d382aafbSBarry Smith 1453d382aafbSBarry Smith Level: beginner 1454d382aafbSBarry Smith 14552981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1456d382aafbSBarry Smith 14571890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1458d382aafbSBarry Smith S*/ 1459d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1460d382aafbSBarry Smith 1461270bf2e7SJed Brown /*MC 1462127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1463127c8a3bSJed Brown 1464127c8a3bSJed Brown Level: developer 1465127c8a3bSJed Brown 1466127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1467127c8a3bSJed Brown 1468127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1469127c8a3bSJed Brown M*/ 1470127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1471127c8a3bSJed Brown 1472127c8a3bSJed Brown /*MC 1473270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1474270bf2e7SJed Brown 1475270bf2e7SJed Brown Level: developer 1476270bf2e7SJed Brown 1477270bf2e7SJed Brown Notes: 1478270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1479270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1480270bf2e7SJed Brown 14818dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1482270bf2e7SJed Brown M*/ 1483270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1484270bf2e7SJed Brown 1485d382aafbSBarry Smith /*S 1486140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1487d382aafbSBarry Smith by string name 1488d382aafbSBarry Smith 1489d382aafbSBarry Smith Level: advanced 1490d382aafbSBarry Smith 1491140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1492d382aafbSBarry Smith S*/ 1493140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1494d382aafbSBarry Smith 1495d382aafbSBarry Smith /*E 1496d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1497d382aafbSBarry Smith 1498d382aafbSBarry Smith Level: beginner 1499d382aafbSBarry Smith 1500d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1501d382aafbSBarry Smith 1502d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1503d382aafbSBarry Smith 1504d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1505d382aafbSBarry Smith 1506d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1507d382aafbSBarry Smith 1508d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1509d382aafbSBarry Smith 1510d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1511d382aafbSBarry Smith E*/ 1512d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1513d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1514d6a4318aSJed Brown 1515639ff905SBarry Smith /* 1516639ff905SBarry Smith Defines PETSc error handling. 1517639ff905SBarry Smith */ 1518639ff905SBarry Smith #include <petscerror.h> 1519d382aafbSBarry Smith 15200700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1521014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1522014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1524d382aafbSBarry Smith 1525d382aafbSBarry Smith /* 1526d382aafbSBarry Smith Routines that get memory usage information from the OS 1527d382aafbSBarry Smith */ 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1531d382aafbSBarry Smith 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1534d382aafbSBarry Smith 1535d382aafbSBarry Smith /* 1536d382aafbSBarry Smith Initialization of PETSc 1537d382aafbSBarry Smith */ 1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1540014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1543014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1548d382aafbSBarry Smith 1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1550607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1551d382aafbSBarry Smith 1552014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1553014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1555014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1556d382aafbSBarry Smith 1557d382aafbSBarry Smith /* 1558d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15592981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1560d382aafbSBarry Smith */ 1561638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1562638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1563638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1564d382aafbSBarry Smith 1565d382aafbSBarry Smith /* 1566d382aafbSBarry Smith Functions that can act on any PETSc object. 1567d382aafbSBarry Smith */ 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1587bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1588bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1596d382aafbSBarry Smith 1597665c2dedSJed Brown #include <petscviewertypes.h> 1598639ff905SBarry Smith #include <petscoptions.h> 1599639ff905SBarry Smith 1600639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1601dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1602639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16030005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16040005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1612ce1779c8SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,const char[],const char[]); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1618d382aafbSBarry Smith 1619e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16207aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1621e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1622e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1623e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1624e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1625e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1626e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1627e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1628e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1629e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 163015681b3cSBarry Smith 1631ec7429eaSBarry Smith #else 16327aab2a10SBarry Smith #define PetscSAWsBlock() 0 1633e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1634e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1635e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1636e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1637e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1638e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1639e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1640e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1641e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 164215681b3cSBarry Smith 1643ec7429eaSBarry Smith #endif 1644b90c6cbeSBarry Smith 16457d5d4d99SBarry Smith typedef void* PetscDLHandle; 1646e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 164782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 164882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 164982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16507d5d4d99SBarry Smith 1651d382aafbSBarry Smith 16525fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1653a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16545fe58b6fSBarry Smith #endif 16557eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1656a64a8e02SBarry Smith 1657d382aafbSBarry Smith /*S 1658140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1659d382aafbSBarry Smith 16601d0fab5eSBarry Smith Level: developer 1661d382aafbSBarry Smith 16621d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16631d0fab5eSBarry Smith 1664140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1665d382aafbSBarry Smith S*/ 1666140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1667d382aafbSBarry Smith 1668140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1669140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1670140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1671140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1672140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1673140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1674d382aafbSBarry Smith 1675d382aafbSBarry Smith /* 1676503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1677d382aafbSBarry Smith link libraries that will be loaded as needed. 1678d382aafbSBarry Smith */ 1679a240a19fSJed Brown 1680a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1681a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1682140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 16831c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 16841c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1685140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1686140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1687140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1688140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1689d382aafbSBarry Smith 1690d382aafbSBarry Smith /*S 1691d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1692d382aafbSBarry Smith 1693d382aafbSBarry Smith Level: advanced 1694d382aafbSBarry Smith 1695d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1696d382aafbSBarry Smith S*/ 1697d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1698014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1706d382aafbSBarry Smith 1707d382aafbSBarry Smith /* 1708d382aafbSBarry Smith Useful utility routines 1709d382aafbSBarry Smith */ 1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1712014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1713014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1714014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1716d382aafbSBarry Smith 1717503cfb0cSBarry Smith /* 1718ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1719503cfb0cSBarry Smith 1720503cfb0cSBarry Smith Notes: This is useful in cases like 1721503cfb0cSBarry Smith $ int *a; 1722ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1723ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1724503cfb0cSBarry Smith */ 1725d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1726503cfb0cSBarry Smith 1727cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1728cae2f346SBarry Smith # include <valgrind/valgrind.h> 1729cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1730cae2f346SBarry Smith #else 1731cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1732cae2f346SBarry Smith #endif 1733cae2f346SBarry Smith 1734238ccf28SShri Abhyankar 1735d382aafbSBarry Smith /*MC 1736d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1737d382aafbSBarry Smith 1738d382aafbSBarry Smith Synopsis: 1739aaa7dc30SBarry Smith #include <petscsys.h> 1740d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1741d382aafbSBarry Smith 1742eca87e8dSBarry Smith Not Collective 1743eca87e8dSBarry Smith 1744d382aafbSBarry Smith Input Parameters: 1745d382aafbSBarry Smith . format - the usual printf() format string 1746d382aafbSBarry Smith 1747d382aafbSBarry Smith Level: developer 1748d382aafbSBarry Smith 1749d382aafbSBarry Smith Fortran Note: 1750d382aafbSBarry Smith This routine is not supported in Fortran. 1751d382aafbSBarry Smith 1752d382aafbSBarry Smith Concepts: help messages^printing 1753d382aafbSBarry Smith Concepts: printing^help messages 1754d382aafbSBarry Smith 1755d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1756d382aafbSBarry Smith M*/ 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1758d382aafbSBarry Smith 1759fcfd50ebSBarry Smith /* 1760fcfd50ebSBarry Smith Defines PETSc profiling. 1761fcfd50ebSBarry Smith */ 17622c8e378dSBarry Smith #include <petsclog.h> 1763fcfd50ebSBarry Smith 1764b90c6cbeSBarry Smith 1765fcfd50ebSBarry Smith 1766fcfd50ebSBarry Smith /* 1767fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1768fcfd50ebSBarry Smith */ 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1776fcfd50ebSBarry Smith 1777fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1778fcfd50ebSBarry Smith #include <stdarg.h> 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1782fcfd50ebSBarry Smith 1783fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1785fcfd50ebSBarry Smith #endif 1786fcfd50ebSBarry Smith 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1790d382aafbSBarry Smith 1791d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 179396a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 179474ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1795d382aafbSBarry Smith #endif 1796d382aafbSBarry Smith 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 17990ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1804d382aafbSBarry Smith 1805014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1806d382aafbSBarry Smith 1807d382aafbSBarry Smith /*S 1808d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1809d382aafbSBarry Smith 1810d382aafbSBarry Smith Level: advanced 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1813d382aafbSBarry Smith S*/ 1814014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1815d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1821d382aafbSBarry Smith 1822d382aafbSBarry Smith /* 1823d382aafbSBarry Smith For use in debuggers 1824d382aafbSBarry Smith */ 1825014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1826014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1830d382aafbSBarry Smith 1831a663daf8SBarry Smith #include <stddef.h> 1832a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1833d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1834d382aafbSBarry Smith #include <stdlib.h> 1835d382aafbSBarry Smith #endif 18366c7e564aSBarry Smith 18374a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1838d382aafbSBarry Smith #include <xmmintrin.h> 1839d382aafbSBarry Smith #endif 1840d382aafbSBarry Smith 1841fcfd50ebSBarry Smith #undef __FUNCT__ 1842fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1843d382aafbSBarry Smith /*@C 1844d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1845d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1846d382aafbSBarry Smith PetscMemmove() in that case. 1847d382aafbSBarry Smith 1848d382aafbSBarry Smith Not Collective 1849d382aafbSBarry Smith 1850d382aafbSBarry Smith Input Parameters: 1851d382aafbSBarry Smith + b - pointer to initial memory space 1852d382aafbSBarry Smith - n - length (in bytes) of space to copy 1853d382aafbSBarry Smith 1854d382aafbSBarry Smith Output Parameter: 1855d382aafbSBarry Smith . a - pointer to copy space 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith Level: intermediate 1858d382aafbSBarry Smith 1859d382aafbSBarry Smith Compile Option: 1860d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1861d382aafbSBarry Smith for memory copies on double precision values. 1862d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1863d382aafbSBarry Smith for memory copies on double precision values. 1864d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1865d382aafbSBarry Smith for memory copies on double precision values. 1866d382aafbSBarry Smith 1867d382aafbSBarry Smith Note: 1868d382aafbSBarry Smith This routine is analogous to memcpy(). 1869d382aafbSBarry Smith 1870503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1871503cfb0cSBarry Smith 1872d382aafbSBarry Smith Concepts: memory^copying 1873d382aafbSBarry Smith Concepts: copying^memory 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith .seealso: PetscMemmove() 1876d382aafbSBarry Smith 1877d382aafbSBarry Smith @*/ 18787087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1879d382aafbSBarry Smith { 1880d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1881d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1882d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1883a7e36092SMatthew G Knepley PetscFunctionBegin; 1884e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1885e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1886a7e36092SMatthew G Knepley #else 1887d382aafbSBarry Smith PetscFunctionBegin; 1888a7e36092SMatthew G Knepley #endif 1889d382aafbSBarry Smith if (a != b) { 1890d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1891e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1892d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1893d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1894d382aafbSBarry Smith #endif 1895d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1896d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1897d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1898d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1899c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1900c5df96a5SBarry Smith PetscErrorCode ierr; 1901c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19028b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1903d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1904d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1905d382aafbSBarry Smith #else 1906d382aafbSBarry Smith size_t i; 1907d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1908d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1909d382aafbSBarry Smith #endif 1910d382aafbSBarry Smith } else { 1911d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1912d382aafbSBarry Smith } 1913d382aafbSBarry Smith #else 1914d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1915d382aafbSBarry Smith #endif 1916d382aafbSBarry Smith } 1917d382aafbSBarry Smith PetscFunctionReturn(0); 1918d382aafbSBarry Smith } 1919d382aafbSBarry Smith 1920d382aafbSBarry Smith /*@C 1921d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith Not Collective 1924d382aafbSBarry Smith 1925d382aafbSBarry Smith Input Parameters: 1926d382aafbSBarry Smith + a - pointer to beginning memory location 1927d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1928d382aafbSBarry Smith 1929d382aafbSBarry Smith Level: intermediate 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith Compile Option: 1932d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1933d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1934d382aafbSBarry Smith 1935503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1936503cfb0cSBarry Smith 1937d382aafbSBarry Smith Concepts: memory^zeroing 1938d382aafbSBarry Smith Concepts: zeroing^memory 1939d382aafbSBarry Smith 1940d382aafbSBarry Smith .seealso: PetscMemcpy() 1941d382aafbSBarry Smith @*/ 19427087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1943d382aafbSBarry Smith { 1944d382aafbSBarry Smith if (n > 0) { 1945d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1946e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1947d382aafbSBarry Smith #endif 1948d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1949d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1950d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1951d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1952d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1953d382aafbSBarry Smith } else { 1954d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1955d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1956d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1957d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1958d382aafbSBarry Smith } else { 1959d382aafbSBarry Smith #endif 1960d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1961d382aafbSBarry Smith bzero((char *)a,n); 1962d382aafbSBarry Smith #else 1963d382aafbSBarry Smith memset((char*)a,0,n); 1964d382aafbSBarry Smith #endif 1965d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1966d382aafbSBarry Smith } 1967d382aafbSBarry Smith #endif 1968d382aafbSBarry Smith } 1969d382aafbSBarry Smith return 0; 1970d382aafbSBarry Smith } 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith /*MC 1973d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1974d382aafbSBarry Smith 1975eca87e8dSBarry Smith Synopsis: 1976aaa7dc30SBarry Smith #include <petscsys.h> 1977eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1978eca87e8dSBarry Smith 1979d382aafbSBarry Smith Not Collective 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith Input Parameters: 1982d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1983d382aafbSBarry Smith . n - number of elements to fetch 1984d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 198550d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith Level: developer 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith Notes: 1990d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1991d382aafbSBarry Smith 199250d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 199350d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 199450d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 199563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 199663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 199763cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1998d382aafbSBarry Smith 1999d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2000d382aafbSBarry Smith address). 2001d382aafbSBarry Smith 2002d382aafbSBarry Smith Concepts: memory 2003d382aafbSBarry Smith M*/ 2004d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2005d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2006d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2007d382aafbSBarry Smith } while (0) 2008d382aafbSBarry Smith 2009d382aafbSBarry Smith /* 2010d382aafbSBarry Smith Determine if some of the kernel computation routines use 2011d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2012d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2013d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2014e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2015d382aafbSBarry Smith */ 2016d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2017d382aafbSBarry Smith 2018d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2019d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2020d382aafbSBarry Smith #endif 2021d382aafbSBarry Smith 20225a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20235a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2024d382aafbSBarry Smith #endif 2025d382aafbSBarry Smith 2026d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2027d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2028d382aafbSBarry Smith #endif 2029d382aafbSBarry Smith 2030d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2031d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2032d382aafbSBarry Smith #endif 2033d382aafbSBarry Smith 2034d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2035d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2036d382aafbSBarry Smith #endif 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2039d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2040d382aafbSBarry Smith #endif 2041d382aafbSBarry Smith 2042d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2043d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2044d382aafbSBarry Smith #endif 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2047d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2048d382aafbSBarry Smith #endif 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2051d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2052d382aafbSBarry Smith #endif 2053d382aafbSBarry Smith 2054d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2055d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2056d382aafbSBarry Smith #endif 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2059d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2060d382aafbSBarry Smith #endif 2061d382aafbSBarry Smith 2062d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2063d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2064d382aafbSBarry Smith #endif 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2067d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2068d382aafbSBarry Smith #endif 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2071d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2072d382aafbSBarry Smith #endif 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith #endif 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith /* 2077d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2078d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2079d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2080d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2081d382aafbSBarry Smith ugly extern "C" {} wrappers. 2082d382aafbSBarry Smith */ 2083d382aafbSBarry Smith #if defined(__cplusplus) 2084d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2085d382aafbSBarry Smith #define EXTERN_C_END } 2086d382aafbSBarry Smith #else 2087d382aafbSBarry Smith #define EXTERN_C_BEGIN 2088d382aafbSBarry Smith #define EXTERN_C_END 2089d382aafbSBarry Smith #endif 2090d382aafbSBarry Smith 2091d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith /*MC 2094d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2095d382aafbSBarry Smith communication 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith Level: beginner 2098d382aafbSBarry Smith 2099d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2102d382aafbSBarry Smith M*/ 2103d382aafbSBarry Smith 2104d382aafbSBarry Smith /*MC 2105d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2106d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2107d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith Level: beginner 2111d382aafbSBarry Smith 2112d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2113d382aafbSBarry Smith M*/ 2114d382aafbSBarry Smith 2115d382aafbSBarry Smith /*MC 21168619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21178619c96cSJed Brown 21188619c96cSJed Brown Synopsis: 21198619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 21208619c96cSJed Brown #include <petscsys.h> 21218619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21228619c96cSJed Brown 21238619c96cSJed Brown Level: beginner 21248619c96cSJed Brown 21258619c96cSJed Brown Note: 21268619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 21278619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 21288619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 21298619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 21308619c96cSJed Brown 21318619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21328619c96cSJed Brown M*/ 21338619c96cSJed Brown 21348619c96cSJed Brown /*MC 2135d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2136d382aafbSBarry Smith 2137d382aafbSBarry Smith Level: beginner 2138d382aafbSBarry Smith 2139d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2140d382aafbSBarry Smith M*/ 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith /*MC 2143d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2144d382aafbSBarry Smith Level: beginner 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2147d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2150d382aafbSBarry Smith M*/ 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith /*MC 2153d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith Level: beginner 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2158d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2161d382aafbSBarry Smith M*/ 2162d382aafbSBarry Smith 2163d382aafbSBarry Smith /*MC 2164d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2165d382aafbSBarry Smith 2166d382aafbSBarry Smith Level: beginner 2167d382aafbSBarry Smith 2168d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2169d382aafbSBarry Smith pass this value 2170d382aafbSBarry Smith 2171d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2172d382aafbSBarry Smith M*/ 2173d382aafbSBarry Smith 2174d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2175d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2176014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2177014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2178d382aafbSBarry Smith #else 2179d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2180d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2181d382aafbSBarry Smith #endif 2182d382aafbSBarry Smith #endif 2183d382aafbSBarry Smith 2184d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2185d382aafbSBarry Smith 2186d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2187d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2188d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2189d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2190d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2191d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2192d382aafbSBarry Smith 2193c5df96a5SBarry Smith #undef __FUNCT__ 2194c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 2195c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2196c5df96a5SBarry Smith { 2197c5df96a5SBarry Smith PetscFunctionBegin; 2198c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2199c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2200c5df96a5SBarry Smith #endif 2201c5df96a5SBarry Smith *b = (PetscBLASInt)(a); 2202c5df96a5SBarry Smith PetscFunctionReturn(0); 2203c5df96a5SBarry Smith } 2204c5df96a5SBarry Smith 22054dc2109aSBarry Smith #undef __FUNCT__ 22064dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 22074dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22084dc2109aSBarry Smith { 22094dc2109aSBarry Smith PetscFunctionBegin; 22104dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22114dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22124dc2109aSBarry Smith #endif 22134dc2109aSBarry Smith *b = (PetscMPIInt)(a); 22144dc2109aSBarry Smith PetscFunctionReturn(0); 22154dc2109aSBarry Smith } 22164dc2109aSBarry Smith 2217c5df96a5SBarry Smith 2218d382aafbSBarry Smith /* 22192981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2220d382aafbSBarry Smith */ 2221d382aafbSBarry Smith #if defined(hz) 2222d382aafbSBarry Smith #undef hz 2223d382aafbSBarry Smith #endif 2224d382aafbSBarry Smith 2225d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2226d382aafbSBarry Smith 2227d382aafbSBarry Smith 2228d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2229d382aafbSBarry Smith #include <limits.h> 2230d382aafbSBarry Smith #endif 2231d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2232d382aafbSBarry Smith #include <sys/param.h> 2233d382aafbSBarry Smith #endif 2234d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2235d382aafbSBarry Smith #include <sys/types.h> 2236d382aafbSBarry Smith #endif 2237d382aafbSBarry Smith #if defined(MAXPATHLEN) 2238d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2239d382aafbSBarry Smith #elif defined(MAX_PATH) 2240d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2241d382aafbSBarry Smith #elif defined(_MAX_PATH) 2242d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2243d382aafbSBarry Smith #else 2244d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2245d382aafbSBarry Smith #endif 2246d382aafbSBarry Smith 2247d382aafbSBarry Smith /*MC 2248d382aafbSBarry Smith 2249d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2250d382aafbSBarry Smith 2251d382aafbSBarry Smith $ 1) classic Fortran 77 style 2252d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2253d382aafbSBarry Smith $ XXX variablename 2254d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2255d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2256d382aafbSBarry Smith $ 2257d382aafbSBarry Smith $ 2) classic Fortran 90 style 2258d1716517SSatish Balay $#include "finclude/petscXXX.h" 2259d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2260d382aafbSBarry Smith $ XXX variablename 2261d382aafbSBarry Smith $ 2262d382aafbSBarry Smith $ 3) Using Fortran modules 2263d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2264d382aafbSBarry Smith $ use petscXXXX 2265d382aafbSBarry Smith $ XXX variablename 2266d382aafbSBarry Smith $ 2267d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2268d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2269d382aafbSBarry Smith $ use petscXXXX 2270d382aafbSBarry Smith $ type(XXX) variablename 2271e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2272d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2273d382aafbSBarry Smith 2274d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2275d382aafbSBarry Smith 2276d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2277d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2278d382aafbSBarry Smith $ integer variablename 2279d382aafbSBarry Smith $ 2280d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2281d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2282d382aafbSBarry Smith 2283d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2284d382aafbSBarry Smith for only a few PETSc functions. 2285d382aafbSBarry Smith 2286d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2287d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2288d382aafbSBarry Smith you cannot have something like 2289d382aafbSBarry Smith $ PetscInt row,col 2290d382aafbSBarry Smith $ PetscScalar val 2291d382aafbSBarry Smith $ ... 2292d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2293d382aafbSBarry Smith You must instead have 2294d382aafbSBarry Smith $ PetscInt row(1),col(1) 2295d382aafbSBarry Smith $ PetscScalar val(1) 2296d382aafbSBarry Smith $ ... 2297d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2298d382aafbSBarry Smith 2299d382aafbSBarry Smith 2300d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2301d382aafbSBarry Smith 2302d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2303d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2304d382aafbSBarry Smith 2305d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2306d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2307d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2308d382aafbSBarry Smith 2309d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2310e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2311d382aafbSBarry Smith 2312d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2313d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2314d382aafbSBarry Smith 2315d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2316d382aafbSBarry Smith automatically by "make allfortranstubs". 2317d382aafbSBarry Smith 2318e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2319d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2320d382aafbSBarry Smith include their predecessors 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith Level: beginner 2323d382aafbSBarry Smith 2324d382aafbSBarry Smith M*/ 2325d382aafbSBarry Smith 2326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2331014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 233227710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2333d382aafbSBarry Smith 2334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2335014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 233660e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2337014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2339014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 234117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 234217d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2345014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2346014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2347745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2352d382aafbSBarry Smith 2353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2355d382aafbSBarry Smith 235676bdecfbSBarry Smith /*J 2357d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2358d382aafbSBarry Smith 2359d382aafbSBarry Smith Level: beginner 2360d382aafbSBarry Smith 2361e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2362d382aafbSBarry Smith with the option --download-sprng 2363d382aafbSBarry Smith 23648f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 236576bdecfbSBarry Smith J*/ 236619fd82e9SBarry Smith typedef const char* PetscRandomType; 2367d382aafbSBarry Smith #define PETSCRAND "rand" 2368d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2369d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2370d382aafbSBarry Smith 2371d382aafbSBarry Smith /* Logging support */ 2372014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2373d382aafbSBarry Smith 2374607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2375d382aafbSBarry Smith 2376d382aafbSBarry Smith /*S 2377d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2378d382aafbSBarry Smith 2379d382aafbSBarry Smith Level: intermediate 2380d382aafbSBarry Smith 2381d382aafbSBarry Smith Concepts: random numbers 2382d382aafbSBarry Smith 2383d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2384d382aafbSBarry Smith S*/ 2385d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2386d382aafbSBarry Smith 2387d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2388140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2389014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2390d382aafbSBarry Smith 2391607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2392bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 239319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 239519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2396ce1779c8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,const char prefix[],const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,prefix,name);} 2397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2398d382aafbSBarry Smith 2399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2408d382aafbSBarry Smith 2409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2411014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2416d382aafbSBarry Smith 2417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2428e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2430d382aafbSBarry Smith 2431d382aafbSBarry Smith /* 2432d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2433d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2434d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2435d382aafbSBarry Smith PetscBinarySeek(). 2436d382aafbSBarry Smith */ 2437d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2438d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2439d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2440d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2441d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2442d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2443d382aafbSBarry Smith 2444d382aafbSBarry Smith /*E 2445d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2446d382aafbSBarry Smith 2447d382aafbSBarry Smith Level: advanced 2448d382aafbSBarry Smith 2449d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2450d382aafbSBarry Smith E*/ 2451d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2455d382aafbSBarry Smith 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2462d382aafbSBarry Smith 2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2468f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2469d382aafbSBarry Smith 24706145cd65SJed Brown /*E 24716145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 24726145cd65SJed Brown 24736145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 24746145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 24756145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 24766145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 24776145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 24786145cd65SJed Brown 24796145cd65SJed Brown Level: developer 24806145cd65SJed Brown 24816145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 24826145cd65SJed Brown E*/ 24836145cd65SJed Brown typedef enum { 24846145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 24856145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 24866145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 24876145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 24886145cd65SJed Brown } PetscBuildTwoSidedType; 24896145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 24906145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 24916145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 24926145cd65SJed Brown 2493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2494d382aafbSBarry Smith 2495d382aafbSBarry Smith /*E 2496d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2497d382aafbSBarry Smith 2498d382aafbSBarry Smith Level: beginner 2499d382aafbSBarry Smith 2500d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2501d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2502d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2503d382aafbSBarry Smith E*/ 25046fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2505d382aafbSBarry Smith 2506d382aafbSBarry Smith /*MC 2507d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2508d382aafbSBarry Smith 2509d382aafbSBarry Smith Level: beginner 2510d382aafbSBarry Smith 2511d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2512eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2513eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2514d382aafbSBarry Smith 2515d382aafbSBarry Smith M*/ 2516d382aafbSBarry Smith 2517d382aafbSBarry Smith /*MC 2518d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2519d382aafbSBarry Smith value into that location 2520d382aafbSBarry Smith 2521d382aafbSBarry Smith Level: beginner 2522d382aafbSBarry Smith 2523d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2524eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2525eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2526d382aafbSBarry Smith 2527d382aafbSBarry Smith M*/ 2528d382aafbSBarry Smith 2529d382aafbSBarry Smith /*MC 2530d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2531d382aafbSBarry Smith 2532d382aafbSBarry Smith Level: beginner 2533d382aafbSBarry Smith 2534d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2535d382aafbSBarry Smith 2536d382aafbSBarry Smith M*/ 2537d382aafbSBarry Smith 2538ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2539ce94432eSBarry Smith 254045487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 254145487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 254245487dadSJed Brown 2543d382aafbSBarry Smith /*S 2544d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2545d382aafbSBarry Smith 2546d382aafbSBarry Smith Level: advanced 2547d382aafbSBarry Smith 2548d382aafbSBarry Smith Concepts: communicator, create 2549d382aafbSBarry Smith S*/ 2550d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2551d382aafbSBarry Smith 2552d382aafbSBarry Smith struct _n_PetscSubcomm { 2553d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2554d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2555d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 255645487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 255745487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2558708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 255945487dadSJed Brown PetscSubcommType type; 2560d382aafbSBarry Smith }; 2561d382aafbSBarry Smith 2562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 256665d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2567053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2568f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2569d382aafbSBarry Smith 25700f453b92SJed Brown /*S 25710f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 25720f453b92SJed Brown 25730f453b92SJed Brown Level: developer 25740f453b92SJed Brown 25750f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 25760f453b92SJed Brown S*/ 25770f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 257813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 25790f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 258013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2581137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2582137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2583137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 258413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 258513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 25860f453b92SJed Brown 2587471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2588471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2589471ecdacSJed Brown * possible. */ 2590f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2591d382aafbSBarry Smith 2592dff31646SBarry Smith extern PetscSegBuffer PetscCitationsList; 25931f817a21SBarry Smith #undef __FUNCT__ 25941f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 25951f817a21SBarry Smith /*@C 25961f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 25971f817a21SBarry Smith 25981f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 25991f817a21SBarry Smith 26001f817a21SBarry Smith Input Parameters: 26011f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 26021f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 26031f817a21SBarry Smith 2604850545d0SSatish Balay Level: intermediate 2605850545d0SSatish Balay 26061f817a21SBarry Smith Options Database: 26071f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 26081f817a21SBarry Smith @*/ 2609dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2610dff31646SBarry Smith { 2611dff31646SBarry Smith size_t len; 2612dff31646SBarry Smith char *vstring; 2613dff31646SBarry Smith PetscErrorCode ierr; 2614dff31646SBarry Smith 26151f817a21SBarry Smith PetscFunctionBegin; 26168d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2617dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2618dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2619dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2620dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26211f817a21SBarry Smith PetscFunctionReturn(0); 2622dff31646SBarry Smith } 2623dff31646SBarry Smith 2624dff31646SBarry Smith 2625d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2626d382aafbSBarry Smith #undef __FUNCT__ 2627d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2628d382aafbSBarry Smith 2629d382aafbSBarry Smith #endif 2630