1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10*1cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 11*1cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 12*1cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 49*1cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 50*1cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 72014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 73014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 74014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7521f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 76d382aafbSBarry Smith #else 77014dd563SJed Brown # define PETSC_DLLEXPORT 78014dd563SJed Brown # define PETSC_DLLIMPORT 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 80014dd563SJed Brown #endif 81014dd563SJed Brown 82014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 83014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 84014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 85014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 86014dd563SJed Brown #endif 87014dd563SJed Brown 88*1cc8b206SBarry Smith /* 89*1cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 90*1cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 91*1cc8b206SBarry Smith used from C and are always visible in the shared libraries 92*1cc8b206SBarry Smith */ 932c280183SJed Brown #if defined(__cplusplus) 94014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 95638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 9621f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 97014dd563SJed Brown #else 98014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1006258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 101d382aafbSBarry Smith #endif 10227710113SBarry Smith 1032c8e378dSBarry Smith #include <petscversion.h> 104301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 105d382aafbSBarry Smith 106d382aafbSBarry Smith /* ========================================================================== */ 107d382aafbSBarry Smith 108d382aafbSBarry Smith /* 109d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 110d382aafbSBarry Smith 111d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 112d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 113d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 114d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 115d382aafbSBarry Smith mpicxx.h directly in their code 116d382aafbSBarry Smith */ 117fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 118d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 119fa9e63e2SJed Brown #endif 120fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 121d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 122fa9e63e2SJed Brown #endif 123076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 124076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 125076e11b5SSatish Balay #endif 1262c8e378dSBarry Smith #include <mpi.h> 12765013866SBarry Smith 128d382aafbSBarry Smith /* 129a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 130a7886beaSBarry Smith This usually happens because 131a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 132a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 133a7886beaSBarry Smith */ 134a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 135a7886beaSBarry Smith # if !defined(__MPIUNI_H) 136a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 137a7886beaSBarry Smith # endif 138a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 139a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 140a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 141a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 142a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 143a7886beaSBarry Smith # endif 144a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 145a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 146a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 147c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 148c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 149a7886beaSBarry Smith # endif 150a7886beaSBarry Smith #endif 151a7886beaSBarry Smith 152a7886beaSBarry Smith /* 1532981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 154d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 155d382aafbSBarry Smith */ 156d382aafbSBarry Smith #include <stdio.h> 157d382aafbSBarry Smith 158d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 159d382aafbSBarry Smith #if !defined(MPIAPI) 160d382aafbSBarry Smith #define MPIAPI 161d382aafbSBarry Smith #endif 162d382aafbSBarry Smith 163*1cc8b206SBarry Smith /* 164*1cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 165*1cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 166*1cc8b206SBarry Smith does not match the actual type of the argument being passed in 167*1cc8b206SBarry Smith */ 168c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 169894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 170894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1718ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1728ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 173894dd566SJed Brown # endif 174894dd566SJed Brown #endif 175894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 176894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1778ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1788ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 179894dd566SJed Brown #endif 180b3506946SBarry Smith 181d382aafbSBarry Smith /*MC 1821957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 183d382aafbSBarry Smith 184d382aafbSBarry Smith Level: beginner 185d382aafbSBarry Smith 186d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 187d382aafbSBarry Smith M*/ 188d382aafbSBarry Smith typedef int PetscErrorCode; 189d382aafbSBarry Smith 190d382aafbSBarry Smith /*MC 191d382aafbSBarry Smith 192503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 193d382aafbSBarry Smith 1941957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1951957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 1961957e957SBarry Smith 1971957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 1981957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 1991957e957SBarry Smith 2001957e957SBarry Smith Level: developer 201d382aafbSBarry Smith 2020700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 203d382aafbSBarry Smith M*/ 2040700a824SBarry Smith typedef int PetscClassId; 205d382aafbSBarry Smith 206d382aafbSBarry Smith 207d382aafbSBarry Smith /*MC 208d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 209d382aafbSBarry Smith 210d382aafbSBarry Smith Level: intermediate 211d382aafbSBarry Smith 212d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2133b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 214d382aafbSBarry Smith 2154dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2162981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 217d382aafbSBarry Smith 218*1cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 219d382aafbSBarry Smith 220d382aafbSBarry Smith M*/ 221d382aafbSBarry Smith typedef int PetscMPIInt; 222d382aafbSBarry Smith 223d382aafbSBarry Smith /*MC 224d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 225d382aafbSBarry Smith 226d382aafbSBarry Smith Level: intermediate 227d382aafbSBarry Smith 228d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 229d382aafbSBarry Smith M*/ 230d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2315a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 232d382aafbSBarry Smith 233fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 234fab38c73SJed Brown #include <stdint.h> 235fab38c73SJed Brown #endif 236fab38c73SJed Brown 237d382aafbSBarry Smith /*MC 238d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2393b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 240d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 241d382aafbSBarry Smith 242d382aafbSBarry Smith Level: intermediate 243d382aafbSBarry Smith 244d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 245d382aafbSBarry Smith M*/ 246fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 247fab38c73SJed Brown typedef int64_t Petsc64bitInt; 248fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 249f505b413SSatish Balay typedef long long Petsc64bitInt; 250f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 251236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 252236ed0a3SSatish Balay #else 253f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 254236ed0a3SSatish Balay #endif 255d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 256236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 25741860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 25868db2e82SFande Kong # define MPIU_INT MPI_LONG_LONG_INT 259fab38c73SJed Brown # else 260d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 261fab38c73SJed Brown # endif 262d382aafbSBarry Smith #else 263d382aafbSBarry Smith typedef int PetscInt; 264d382aafbSBarry Smith #define MPIU_INT MPI_INT 265d382aafbSBarry Smith #endif 266e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 267e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 268e56f5c9eSBarry Smith #else 269e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 270e56f5c9eSBarry Smith #endif 271236ed0a3SSatish Balay 272d382aafbSBarry Smith 273702bc34aSSatish Balay /*MC 274702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 275702bc34aSSatish Balay 276702bc34aSSatish Balay Level: intermediate 277702bc34aSSatish Balay 278702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 279702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 280702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 281702bc34aSSatish Balay 282c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2832981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 284702bc34aSSatish Balay 2852981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 286702bc34aSSatish Balay if you run ./configure with the option 287702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2882981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2892981ebdbSBarry Smith 2902981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2912981ebdbSBarry Smith 2922981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 293702bc34aSSatish Balay 294702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 295702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 296702bc34aSSatish Balay 297*1cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 298702bc34aSSatish Balay 299702bc34aSSatish Balay M*/ 300702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 301702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 302702bc34aSSatish Balay #else 303702bc34aSSatish Balay typedef int PetscBLASInt; 304702bc34aSSatish Balay #endif 305702bc34aSSatish Balay 30658b60935SBarry Smith /*EC 30758b60935SBarry Smith 3082981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 30958b60935SBarry Smith 31058b60935SBarry Smith Level: advanced 31158b60935SBarry Smith 31258b60935SBarry Smith .seealso: PetscObjectSetPrecision() 31358b60935SBarry Smith E*/ 31458b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 315014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 31658b60935SBarry Smith 317503cfb0cSBarry Smith /* 318503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 319503cfb0cSBarry Smith */ 320d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 321adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 322d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 323adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 324d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 325adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 326d382aafbSBarry Smith #else 327d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 328d382aafbSBarry Smith #endif 329d382aafbSBarry Smith 330d382aafbSBarry Smith /* 331d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 332d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 333d382aafbSBarry Smith */ 334014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 335d382aafbSBarry Smith 336d382aafbSBarry Smith /* 337d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 338d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 339d382aafbSBarry Smith */ 340014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 341d382aafbSBarry Smith 342d382aafbSBarry Smith /*MC 343d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 344d382aafbSBarry Smith 345d382aafbSBarry Smith Synopsis: 346aaa7dc30SBarry Smith #include <petscsys.h> 347ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 348d382aafbSBarry Smith 349eca87e8dSBarry Smith Not Collective 350eca87e8dSBarry Smith 351d382aafbSBarry Smith Input Parameters: 352d382aafbSBarry Smith . cond - condition or expression 353d382aafbSBarry Smith 354d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 355d382aafbSBarry Smith branch is unlikely. 356d382aafbSBarry Smith 357d382aafbSBarry Smith Level: advanced 358d382aafbSBarry Smith 359d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 360d382aafbSBarry Smith M*/ 361d382aafbSBarry Smith 362d382aafbSBarry Smith /*MC 363d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 364d382aafbSBarry Smith 365d382aafbSBarry Smith Synopsis: 366aaa7dc30SBarry Smith #include <petscsys.h> 367ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 368d382aafbSBarry Smith 369eca87e8dSBarry Smith Not Collective 370eca87e8dSBarry Smith 371d382aafbSBarry Smith Input Parameters: 372d382aafbSBarry Smith . cond - condition or expression 373d382aafbSBarry Smith 374d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 375d382aafbSBarry Smith branch is likely. 376d382aafbSBarry Smith 377d382aafbSBarry Smith Level: advanced 378d382aafbSBarry Smith 379d382aafbSBarry Smith .seealso: PetscUnlikely() 380d382aafbSBarry Smith M*/ 381d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 382d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 383d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 384d382aafbSBarry Smith #else 385cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 386cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 387d382aafbSBarry Smith #endif 388d382aafbSBarry Smith 389d382aafbSBarry Smith /* 390d382aafbSBarry Smith Declare extern C stuff after including external header files 391d382aafbSBarry Smith */ 392d382aafbSBarry Smith 393d382aafbSBarry Smith 394d382aafbSBarry Smith /* 395d382aafbSBarry Smith Basic PETSc constants 396d382aafbSBarry Smith */ 397d382aafbSBarry Smith 398d382aafbSBarry Smith /*E 399ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 400d382aafbSBarry Smith 401d382aafbSBarry Smith Level: beginner 402d382aafbSBarry Smith 403ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 40434e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 40534e82e7dSBarry Smith 406*1cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 407d382aafbSBarry Smith E*/ 408ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4096a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4105a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 41170b3c8c7SBarry Smith 4128b49ba18SBarry Smith /* 4138b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4148b49ba18SBarry Smith */ 4158b49ba18SBarry Smith #include <petscmath.h> 4168b49ba18SBarry Smith 41770b3c8c7SBarry Smith /*E 41870b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 41970b3c8c7SBarry Smith 42070b3c8c7SBarry Smith Level: beginner 42170b3c8c7SBarry Smith 42270b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42370b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 42470b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 42570b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 42670b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 42770b3c8c7SBarry Smith 42870b3c8c7SBarry Smith E*/ 42970b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4306a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 431d382aafbSBarry Smith 432d382aafbSBarry Smith /*MC 433ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 434d382aafbSBarry Smith 435d382aafbSBarry Smith Level: beginner 436d382aafbSBarry Smith 437d382aafbSBarry Smith Note: Zero integer 438d382aafbSBarry Smith 439ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 440d382aafbSBarry Smith M*/ 441d382aafbSBarry Smith 442d382aafbSBarry Smith /*MC 443ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 444d382aafbSBarry Smith 445d382aafbSBarry Smith Level: beginner 446d382aafbSBarry Smith 447d382aafbSBarry Smith Note: Nonzero integer 448d382aafbSBarry Smith 449ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 450d382aafbSBarry Smith M*/ 451d382aafbSBarry Smith 452d382aafbSBarry Smith /*MC 4530298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 454d382aafbSBarry Smith 455d382aafbSBarry Smith Level: beginner 456d382aafbSBarry Smith 457d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 458d382aafbSBarry Smith some default 459d382aafbSBarry Smith 460d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 461503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 462d382aafbSBarry Smith 463d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 464d382aafbSBarry Smith 465d382aafbSBarry Smith M*/ 4663bcbec90SJed Brown #define PETSC_NULL NULL 467d382aafbSBarry Smith 468d382aafbSBarry Smith /*MC 4690298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 470d382aafbSBarry Smith 471d382aafbSBarry Smith Level: beginner 472d382aafbSBarry Smith 473d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 474d382aafbSBarry Smith some default 475d382aafbSBarry Smith 476d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 477d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 478d382aafbSBarry Smith 479d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 480d382aafbSBarry Smith 481d382aafbSBarry Smith M*/ 4820298fd71SBarry Smith #define PETSC_IGNORE NULL 483d382aafbSBarry Smith 484d382aafbSBarry Smith /*MC 485557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 486557d4da8SBarry Smith where you wish PETSc to use the default. 487557d4da8SBarry Smith 488557d4da8SBarry Smith Level: beginner 489557d4da8SBarry Smith 490557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 491557d4da8SBarry Smith 492557d4da8SBarry Smith M*/ 493557d4da8SBarry Smith #define PETSC_DECIDE -1 494557d4da8SBarry Smith 495557d4da8SBarry Smith /*MC 496d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 497d382aafbSBarry Smith where you wish PETSc to compute the required value. 498d382aafbSBarry Smith 499d382aafbSBarry Smith Level: beginner 500d382aafbSBarry Smith 501557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 502557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 503557d4da8SBarry Smith 5040298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 505d382aafbSBarry Smith 506d382aafbSBarry Smith M*/ 507d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 508d382aafbSBarry Smith 509d382aafbSBarry Smith /*MC 510557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 511557d4da8SBarry Smith where you wish PETSc to use the default. 512557d4da8SBarry Smith 513557d4da8SBarry Smith Level: beginner 514557d4da8SBarry Smith 5152d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 516557d4da8SBarry Smith 5170298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 518557d4da8SBarry Smith 519557d4da8SBarry Smith M*/ 520557d4da8SBarry Smith #define PETSC_DEFAULT -2 521557d4da8SBarry Smith 522557d4da8SBarry Smith /*MC 523d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 524d382aafbSBarry Smith all the processs that PETSc knows about. 525d382aafbSBarry Smith 526d382aafbSBarry Smith Level: beginner 527d382aafbSBarry Smith 528d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 529d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 530d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 531a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 532a990b902SBarry Smith 533a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 534a990b902SBarry Smith is called because it may not have a valid value yet. 535d382aafbSBarry Smith 536d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 537d382aafbSBarry Smith 538d382aafbSBarry Smith M*/ 539014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 540d382aafbSBarry Smith 541d382aafbSBarry Smith /*MC 542503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 543d382aafbSBarry Smith 544d382aafbSBarry Smith Level: beginner 545d382aafbSBarry Smith 546a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 547a990b902SBarry Smith 548d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 549d382aafbSBarry Smith 550d382aafbSBarry Smith M*/ 551d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 552d382aafbSBarry Smith 553d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 554014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 555014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 556014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5574cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 558d382aafbSBarry Smith 559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 560014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 562d382aafbSBarry Smith 563d382aafbSBarry Smith /*MC 564854ce69bSBarry Smith PetscMalloc - Allocates memory, One should use PetscMalloc1() or PetscCalloc1() usually instead of this 565d382aafbSBarry Smith 566eca87e8dSBarry Smith Synopsis: 567aaa7dc30SBarry Smith #include <petscsys.h> 568eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 569eca87e8dSBarry Smith 570eca87e8dSBarry Smith Not Collective 571eca87e8dSBarry Smith 572d382aafbSBarry Smith Input Parameter: 573d382aafbSBarry Smith . m - number of bytes to allocate 574d382aafbSBarry Smith 575d382aafbSBarry Smith Output Parameter: 576d382aafbSBarry Smith . result - memory allocated 577d382aafbSBarry Smith 578d382aafbSBarry Smith Level: beginner 579d382aafbSBarry Smith 58049d7da52SJed Brown Notes: 58149d7da52SJed Brown Memory is always allocated at least double aligned 582d382aafbSBarry Smith 58349d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 584d382aafbSBarry Smith 585d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 586d382aafbSBarry Smith 587d382aafbSBarry Smith Concepts: memory allocation 588d382aafbSBarry Smith 589d382aafbSBarry Smith M*/ 59049d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 591d382aafbSBarry Smith 592d382aafbSBarry Smith /*MC 593503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 594d382aafbSBarry Smith 595d382aafbSBarry Smith Synopsis: 596aaa7dc30SBarry Smith #include <petscsys.h> 597d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 598d382aafbSBarry Smith 599eca87e8dSBarry Smith Not Collective 600eca87e8dSBarry Smith 601eca87e8dSBarry Smith Input Parameters: 602eca87e8dSBarry Smith . addr - address to align (any pointer type) 603eca87e8dSBarry Smith 604d382aafbSBarry Smith Level: developer 605d382aafbSBarry Smith 606d382aafbSBarry Smith .seealso: PetscMallocAlign() 607d382aafbSBarry Smith 608d382aafbSBarry Smith Concepts: memory allocation 609d382aafbSBarry Smith M*/ 610d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 611d382aafbSBarry Smith 612d382aafbSBarry Smith /*MC 613785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 614d382aafbSBarry Smith 615eca87e8dSBarry Smith Synopsis: 616aaa7dc30SBarry Smith #include <petscsys.h> 617785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 618785e854fSJed Brown 619785e854fSJed Brown Not Collective 620785e854fSJed Brown 621785e854fSJed Brown Input Parameter: 622785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 623785e854fSJed Brown 624785e854fSJed Brown Output Parameter: 625785e854fSJed Brown . r1 - memory allocated in first chunk 626785e854fSJed Brown 627785e854fSJed Brown Level: developer 628785e854fSJed Brown 6291795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 630785e854fSJed Brown 631785e854fSJed Brown Concepts: memory allocation 632785e854fSJed Brown 633785e854fSJed Brown M*/ 634f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 635785e854fSJed Brown 636785e854fSJed Brown /*MC 6371795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6381795a4d1SJed Brown 6391795a4d1SJed Brown Synopsis: 640aaa7dc30SBarry Smith #include <petscsys.h> 6411795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6421795a4d1SJed Brown 6431795a4d1SJed Brown Not Collective 6441795a4d1SJed Brown 6451795a4d1SJed Brown Input Parameter: 6461795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6471795a4d1SJed Brown 6481795a4d1SJed Brown Output Parameter: 6491795a4d1SJed Brown . r1 - memory allocated in first chunk 6501795a4d1SJed Brown 6511795a4d1SJed Brown Level: developer 6521795a4d1SJed Brown 6531795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6541795a4d1SJed Brown 6551795a4d1SJed Brown Concepts: memory allocation 6561795a4d1SJed Brown 6571795a4d1SJed Brown M*/ 6581795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6591795a4d1SJed Brown 6601795a4d1SJed Brown /*MC 661dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 662d382aafbSBarry Smith 663eca87e8dSBarry Smith Synopsis: 664aaa7dc30SBarry Smith #include <petscsys.h> 665dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 666eca87e8dSBarry Smith 667eca87e8dSBarry Smith Not Collective 668eca87e8dSBarry Smith 669d382aafbSBarry Smith Input Parameter: 670d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 671dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 672d382aafbSBarry Smith 673d382aafbSBarry Smith Output Parameter: 674d382aafbSBarry Smith + r1 - memory allocated in first chunk 675d382aafbSBarry Smith - r2 - memory allocated in second chunk 676d382aafbSBarry Smith 677d382aafbSBarry Smith Level: developer 678d382aafbSBarry Smith 6791795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 680d382aafbSBarry Smith 681d382aafbSBarry Smith Concepts: memory allocation 682d382aafbSBarry Smith 683d382aafbSBarry Smith M*/ 68420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6851d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 686d382aafbSBarry Smith #else 687ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 688ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6893589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 690d382aafbSBarry Smith #endif 691d382aafbSBarry Smith 692d382aafbSBarry Smith /*MC 6931795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 694d382aafbSBarry Smith 695eca87e8dSBarry Smith Synopsis: 696aaa7dc30SBarry Smith #include <petscsys.h> 6971795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 698eca87e8dSBarry Smith 699eca87e8dSBarry Smith Not Collective 700eca87e8dSBarry Smith 701d382aafbSBarry Smith Input Parameter: 702d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7031795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7041795a4d1SJed Brown 7051795a4d1SJed Brown Output Parameter: 7061795a4d1SJed Brown + r1 - memory allocated in first chunk 7071795a4d1SJed Brown - r2 - memory allocated in second chunk 7081795a4d1SJed Brown 7091795a4d1SJed Brown Level: developer 7101795a4d1SJed Brown 7111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7121795a4d1SJed Brown 7131795a4d1SJed Brown Concepts: memory allocation 7141795a4d1SJed Brown M*/ 7151795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7161795a4d1SJed Brown 7171795a4d1SJed Brown /*MC 718dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 719d382aafbSBarry Smith 720d382aafbSBarry Smith Synopsis: 721aaa7dc30SBarry Smith #include <petscsys.h> 722dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 723d382aafbSBarry Smith 724d382aafbSBarry Smith Not Collective 725d382aafbSBarry Smith 726d382aafbSBarry Smith Input Parameter: 727d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 728d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 729dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 730d382aafbSBarry Smith 731d382aafbSBarry Smith Output Parameter: 732d382aafbSBarry Smith + r1 - memory allocated in first chunk 733d382aafbSBarry Smith . r2 - memory allocated in second chunk 734d382aafbSBarry Smith - r3 - memory allocated in third chunk 735d382aafbSBarry Smith 736d382aafbSBarry Smith Level: developer 737d382aafbSBarry Smith 7381795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 739d382aafbSBarry Smith 740d382aafbSBarry Smith Concepts: memory allocation 741d382aafbSBarry Smith 742d382aafbSBarry Smith M*/ 74320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7441d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 745d382aafbSBarry Smith #else 746ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 747278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7483589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 749d382aafbSBarry Smith #endif 750d382aafbSBarry Smith 751d382aafbSBarry Smith /*MC 7521795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 753d382aafbSBarry Smith 754eca87e8dSBarry Smith Synopsis: 755aaa7dc30SBarry Smith #include <petscsys.h> 7561795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 757eca87e8dSBarry Smith 758eca87e8dSBarry Smith Not Collective 759eca87e8dSBarry Smith 760d382aafbSBarry Smith Input Parameter: 761d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 762d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7631795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7641795a4d1SJed Brown 7651795a4d1SJed Brown Output Parameter: 7661795a4d1SJed Brown + r1 - memory allocated in first chunk 7671795a4d1SJed Brown . r2 - memory allocated in second chunk 7681795a4d1SJed Brown - r3 - memory allocated in third chunk 7691795a4d1SJed Brown 7701795a4d1SJed Brown Level: developer 7711795a4d1SJed Brown 7721795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7731795a4d1SJed Brown 7741795a4d1SJed Brown Concepts: memory allocation 7751795a4d1SJed Brown M*/ 7761795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7771795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7781795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7791795a4d1SJed Brown 7801795a4d1SJed Brown /*MC 781dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 782d382aafbSBarry Smith 783d382aafbSBarry Smith Synopsis: 784aaa7dc30SBarry Smith #include <petscsys.h> 785dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 786d382aafbSBarry Smith 787d382aafbSBarry Smith Not Collective 788d382aafbSBarry Smith 789d382aafbSBarry Smith Input Parameter: 790d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 791d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 792d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 793dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 794d382aafbSBarry Smith 795d382aafbSBarry Smith Output Parameter: 796d382aafbSBarry Smith + r1 - memory allocated in first chunk 797d382aafbSBarry Smith . r2 - memory allocated in second chunk 798d382aafbSBarry Smith . r3 - memory allocated in third chunk 799d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 800d382aafbSBarry Smith 801d382aafbSBarry Smith Level: developer 802d382aafbSBarry Smith 8031795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 804d382aafbSBarry Smith 805d382aafbSBarry Smith Concepts: memory allocation 806d382aafbSBarry Smith 807d382aafbSBarry Smith M*/ 80820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8091d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 810d382aafbSBarry Smith #else 811dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 812ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 813278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8143589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 815d382aafbSBarry Smith #endif 816d382aafbSBarry Smith 817d382aafbSBarry Smith /*MC 8181795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 819d382aafbSBarry Smith 820eca87e8dSBarry Smith Synopsis: 821aaa7dc30SBarry Smith #include <petscsys.h> 8221795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 823eca87e8dSBarry Smith 824eca87e8dSBarry Smith Not Collective 825eca87e8dSBarry Smith 826d382aafbSBarry Smith Input Parameter: 827d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 828d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 829d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8301795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8311795a4d1SJed Brown 8321795a4d1SJed Brown Output Parameter: 8331795a4d1SJed Brown + r1 - memory allocated in first chunk 8341795a4d1SJed Brown . r2 - memory allocated in second chunk 8351795a4d1SJed Brown . r3 - memory allocated in third chunk 8361795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8371795a4d1SJed Brown 8381795a4d1SJed Brown Level: developer 8391795a4d1SJed Brown 8401795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8411795a4d1SJed Brown 8421795a4d1SJed Brown Concepts: memory allocation 8431795a4d1SJed Brown 8441795a4d1SJed Brown M*/ 8451795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8461795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8471795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8481795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8491795a4d1SJed Brown 8501795a4d1SJed Brown /*MC 851dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 852d382aafbSBarry Smith 853d382aafbSBarry Smith Synopsis: 854aaa7dc30SBarry Smith #include <petscsys.h> 855dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 856d382aafbSBarry Smith 857d382aafbSBarry Smith Not Collective 858d382aafbSBarry Smith 859d382aafbSBarry Smith Input Parameter: 860d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 861d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 862d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 863d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 864dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 865d382aafbSBarry Smith 866d382aafbSBarry Smith Output Parameter: 867d382aafbSBarry Smith + r1 - memory allocated in first chunk 868d382aafbSBarry Smith . r2 - memory allocated in second chunk 869d382aafbSBarry Smith . r3 - memory allocated in third chunk 870d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 871d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 872d382aafbSBarry Smith 873d382aafbSBarry Smith Level: developer 874d382aafbSBarry Smith 8751795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 876d382aafbSBarry Smith 877d382aafbSBarry Smith Concepts: memory allocation 878d382aafbSBarry Smith 879d382aafbSBarry Smith M*/ 88020a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8811d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 882d382aafbSBarry Smith #else 883dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 884ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 885278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8863589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 887d382aafbSBarry Smith #endif 888d382aafbSBarry Smith 889d382aafbSBarry Smith /*MC 8901795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 891d382aafbSBarry Smith 892eca87e8dSBarry Smith Synopsis: 893aaa7dc30SBarry Smith #include <petscsys.h> 8941795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 895eca87e8dSBarry Smith 896eca87e8dSBarry Smith Not Collective 897eca87e8dSBarry Smith 898d382aafbSBarry Smith Input Parameter: 899d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 900d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 901d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 902d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9031795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9041795a4d1SJed Brown 9051795a4d1SJed Brown Output Parameter: 9061795a4d1SJed Brown + r1 - memory allocated in first chunk 9071795a4d1SJed Brown . r2 - memory allocated in second chunk 9081795a4d1SJed Brown . r3 - memory allocated in third chunk 9091795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9101795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9111795a4d1SJed Brown 9121795a4d1SJed Brown Level: developer 9131795a4d1SJed Brown 9141795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9151795a4d1SJed Brown 9161795a4d1SJed Brown Concepts: memory allocation 9171795a4d1SJed Brown 9181795a4d1SJed Brown M*/ 9191795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9201795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9211795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9221795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 923d382aafbSBarry Smith 924d382aafbSBarry Smith /*MC 925dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 926d382aafbSBarry Smith 927d382aafbSBarry Smith Synopsis: 928aaa7dc30SBarry Smith #include <petscsys.h> 929dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 930d382aafbSBarry Smith 931d382aafbSBarry Smith Not Collective 932d382aafbSBarry Smith 933d382aafbSBarry Smith Input Parameter: 934d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 935d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 936d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 937d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 938d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 939dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 940d382aafbSBarry Smith 941d382aafbSBarry Smith Output Parameter: 942d382aafbSBarry Smith + r1 - memory allocated in first chunk 943d382aafbSBarry Smith . r2 - memory allocated in second chunk 944d382aafbSBarry Smith . r3 - memory allocated in third chunk 945d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 946d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 947d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 948d382aafbSBarry Smith 949d382aafbSBarry Smith Level: developer 950d382aafbSBarry Smith 9511795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 952d382aafbSBarry Smith 953d382aafbSBarry Smith Concepts: memory allocation 954d382aafbSBarry Smith 955d382aafbSBarry Smith M*/ 95620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9571d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 958d382aafbSBarry Smith #else 959dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 960ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 961278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9623589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 963d382aafbSBarry Smith #endif 964d382aafbSBarry Smith 965d382aafbSBarry Smith /*MC 9661795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 967d382aafbSBarry Smith 968eca87e8dSBarry Smith Synopsis: 969aaa7dc30SBarry Smith #include <petscsys.h> 9701795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 971eca87e8dSBarry Smith 972eca87e8dSBarry Smith Not Collective 973eca87e8dSBarry Smith 974d382aafbSBarry Smith Input Parameter: 975d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 976d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 977d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 978d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 979d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9801795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9811795a4d1SJed Brown 9821795a4d1SJed Brown Output Parameter: 9831795a4d1SJed Brown + r1 - memory allocated in first chunk 9841795a4d1SJed Brown . r2 - memory allocated in second chunk 9851795a4d1SJed Brown . r3 - memory allocated in third chunk 9861795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9871795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9881795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9891795a4d1SJed Brown 9901795a4d1SJed Brown Level: developer 9911795a4d1SJed Brown 9921795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9931795a4d1SJed Brown 9941795a4d1SJed Brown Concepts: memory allocation 9951795a4d1SJed Brown M*/ 9961795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9971795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9981795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9991795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10001795a4d1SJed Brown 10011795a4d1SJed Brown /*MC 1002dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith Synopsis: 1005aaa7dc30SBarry Smith #include <petscsys.h> 1006dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith Not Collective 1009d382aafbSBarry Smith 1010d382aafbSBarry Smith Input Parameter: 1011d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1012d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1013d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1014d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1015d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1016d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1017dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith Output Parameter: 1020d382aafbSBarry Smith + r1 - memory allocated in first chunk 1021d382aafbSBarry Smith . r2 - memory allocated in second chunk 1022d382aafbSBarry Smith . r3 - memory allocated in third chunk 1023d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1024d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1025d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1026eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1027d382aafbSBarry Smith 1028d382aafbSBarry Smith Level: developer 1029d382aafbSBarry Smith 10301795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1031d382aafbSBarry Smith 1032d382aafbSBarry Smith Concepts: memory allocation 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith M*/ 103520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10361d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1037d382aafbSBarry Smith #else 1038dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1039ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1040278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10413589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1042d382aafbSBarry Smith #endif 1043d382aafbSBarry Smith 1044d382aafbSBarry Smith /*MC 10451795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10461795a4d1SJed Brown 10471795a4d1SJed Brown Synopsis: 1048aaa7dc30SBarry Smith #include <petscsys.h> 10491795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10501795a4d1SJed Brown 10511795a4d1SJed Brown Not Collective 10521795a4d1SJed Brown 10531795a4d1SJed Brown Input Parameter: 10541795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10551795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10561795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10571795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10581795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10591795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10601795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10611795a4d1SJed Brown 10621795a4d1SJed Brown Output Parameter: 10631795a4d1SJed Brown + r1 - memory allocated in first chunk 10641795a4d1SJed Brown . r2 - memory allocated in second chunk 10651795a4d1SJed Brown . r3 - memory allocated in third chunk 10661795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10671795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10681795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10691795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10701795a4d1SJed Brown 10711795a4d1SJed Brown Level: developer 10721795a4d1SJed Brown 10731795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10741795a4d1SJed Brown 10751795a4d1SJed Brown Concepts: memory allocation 10761795a4d1SJed Brown M*/ 10771795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10787ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10791795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10801795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10817ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10821795a4d1SJed Brown 10831795a4d1SJed Brown /*MC 1084503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1085d382aafbSBarry Smith 1086eca87e8dSBarry Smith Synopsis: 1087aaa7dc30SBarry Smith #include <petscsys.h> 1088b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1089eca87e8dSBarry Smith 1090eca87e8dSBarry Smith Not Collective 1091eca87e8dSBarry Smith 1092d382aafbSBarry Smith Output Parameter: 1093b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1094d382aafbSBarry Smith 1095d382aafbSBarry Smith Level: beginner 1096d382aafbSBarry Smith 1097ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1098d382aafbSBarry Smith 1099d382aafbSBarry Smith Concepts: memory allocation 1100d382aafbSBarry Smith 1101d382aafbSBarry Smith M*/ 1102b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1103ad0619ddSBarry Smith 1104ad0619ddSBarry Smith /*MC 1105b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1106ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1107ad0619ddSBarry Smith 1108ad0619ddSBarry Smith Synopsis: 1109aaa7dc30SBarry Smith #include <petscsys.h> 1110b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1111ad0619ddSBarry Smith 1112ad0619ddSBarry Smith Not Collective 1113ad0619ddSBarry Smith 1114ad0619ddSBarry Smith Input Parameter: 1115b00a9115SJed Brown . obj - object memory is logged to 1116ad0619ddSBarry Smith 1117ad0619ddSBarry Smith Output Parameter: 1118b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1119ad0619ddSBarry Smith 1120ad0619ddSBarry Smith Level: developer 1121ad0619ddSBarry Smith 1122ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1123ad0619ddSBarry Smith 1124ad0619ddSBarry Smith Concepts: memory allocation 1125ad0619ddSBarry Smith 1126ad0619ddSBarry Smith M*/ 1127d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith /*MC 1130d382aafbSBarry Smith PetscFree - Frees memory 1131d382aafbSBarry Smith 1132eca87e8dSBarry Smith Synopsis: 1133aaa7dc30SBarry Smith #include <petscsys.h> 1134eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1135eca87e8dSBarry Smith 1136eca87e8dSBarry Smith Not Collective 1137eca87e8dSBarry Smith 1138d382aafbSBarry Smith Input Parameter: 1139d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith Level: beginner 1142d382aafbSBarry Smith 114349d7da52SJed Brown Notes: 114449d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 114549d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1146d382aafbSBarry Smith 1147d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith Concepts: memory allocation 1150d382aafbSBarry Smith 1151d382aafbSBarry Smith M*/ 115249d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1153d382aafbSBarry Smith 1154d382aafbSBarry Smith /*MC 1155d382aafbSBarry Smith PetscFreeVoid - Frees memory 1156d382aafbSBarry Smith 1157d382aafbSBarry Smith Synopsis: 1158aaa7dc30SBarry Smith #include <petscsys.h> 1159d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1160d382aafbSBarry Smith 1161eca87e8dSBarry Smith Not Collective 1162eca87e8dSBarry Smith 1163eca87e8dSBarry Smith Input Parameter: 1164eca87e8dSBarry Smith . memory - memory to free 1165eca87e8dSBarry Smith 1166d382aafbSBarry Smith Level: beginner 1167d382aafbSBarry Smith 1168d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1169d382aafbSBarry Smith 1170d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1171d382aafbSBarry Smith 1172d382aafbSBarry Smith Concepts: memory allocation 1173d382aafbSBarry Smith 1174d382aafbSBarry Smith M*/ 1175efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1176d382aafbSBarry Smith 1177d382aafbSBarry Smith 1178d382aafbSBarry Smith /*MC 1179d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1180d382aafbSBarry Smith 1181eca87e8dSBarry Smith Synopsis: 1182aaa7dc30SBarry Smith #include <petscsys.h> 1183eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1184eca87e8dSBarry Smith 1185eca87e8dSBarry Smith Not Collective 1186eca87e8dSBarry Smith 1187d382aafbSBarry Smith Input Parameter: 1188d382aafbSBarry Smith + memory1 - memory to free 1189d382aafbSBarry Smith - memory2 - 2nd memory to free 1190d382aafbSBarry Smith 1191d382aafbSBarry Smith Level: developer 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1194d382aafbSBarry Smith 1195d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith Concepts: memory allocation 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith M*/ 1200b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1201d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1202d382aafbSBarry Smith #else 1203e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1204d382aafbSBarry Smith #endif 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith /*MC 1207d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1208d382aafbSBarry Smith 1209eca87e8dSBarry Smith Synopsis: 1210aaa7dc30SBarry Smith #include <petscsys.h> 1211eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1212eca87e8dSBarry Smith 1213eca87e8dSBarry Smith Not Collective 1214eca87e8dSBarry Smith 1215d382aafbSBarry Smith Input Parameter: 1216d382aafbSBarry Smith + memory1 - memory to free 1217d382aafbSBarry Smith . memory2 - 2nd memory to free 1218d382aafbSBarry Smith - memory3 - 3rd memory to free 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith Level: developer 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith Concepts: memory allocation 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith M*/ 1229b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1230d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1231d382aafbSBarry Smith #else 1232e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1233d382aafbSBarry Smith #endif 1234d382aafbSBarry Smith 1235d382aafbSBarry Smith /*MC 1236d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1237d382aafbSBarry Smith 1238eca87e8dSBarry Smith Synopsis: 1239aaa7dc30SBarry Smith #include <petscsys.h> 1240eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1241eca87e8dSBarry Smith 1242eca87e8dSBarry Smith Not Collective 1243eca87e8dSBarry Smith 1244d382aafbSBarry Smith Input Parameter: 1245d382aafbSBarry Smith + m1 - memory to free 1246d382aafbSBarry Smith . m2 - 2nd memory to free 1247d382aafbSBarry Smith . m3 - 3rd memory to free 1248d382aafbSBarry Smith - m4 - 4th memory to free 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith Level: developer 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith Concepts: memory allocation 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith M*/ 1259b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1260d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1261d382aafbSBarry Smith #else 1262e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1263d382aafbSBarry Smith #endif 1264d382aafbSBarry Smith 1265d382aafbSBarry Smith /*MC 1266d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1267d382aafbSBarry Smith 1268eca87e8dSBarry Smith Synopsis: 1269aaa7dc30SBarry Smith #include <petscsys.h> 1270eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1271eca87e8dSBarry Smith 1272eca87e8dSBarry Smith Not Collective 1273eca87e8dSBarry Smith 1274d382aafbSBarry Smith Input Parameter: 1275d382aafbSBarry Smith + m1 - memory to free 1276d382aafbSBarry Smith . m2 - 2nd memory to free 1277d382aafbSBarry Smith . m3 - 3rd memory to free 1278d382aafbSBarry Smith . m4 - 4th memory to free 1279d382aafbSBarry Smith - m5 - 5th memory to free 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith Level: developer 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith Concepts: memory allocation 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith M*/ 1290b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1291d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1292d382aafbSBarry Smith #else 1293e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1294e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1295d382aafbSBarry Smith #endif 1296d382aafbSBarry Smith 1297d382aafbSBarry Smith 1298d382aafbSBarry Smith /*MC 1299d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1300d382aafbSBarry Smith 1301eca87e8dSBarry Smith Synopsis: 1302aaa7dc30SBarry Smith #include <petscsys.h> 1303eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1304eca87e8dSBarry Smith 1305eca87e8dSBarry Smith Not Collective 1306eca87e8dSBarry Smith 1307d382aafbSBarry Smith Input Parameter: 1308d382aafbSBarry Smith + m1 - memory to free 1309d382aafbSBarry Smith . m2 - 2nd memory to free 1310d382aafbSBarry Smith . m3 - 3rd memory to free 1311d382aafbSBarry Smith . m4 - 4th memory to free 1312d382aafbSBarry Smith . m5 - 5th memory to free 1313d382aafbSBarry Smith - m6 - 6th memory to free 1314d382aafbSBarry Smith 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith Level: developer 1317d382aafbSBarry Smith 1318d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1319d382aafbSBarry Smith 1320d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1321d382aafbSBarry Smith 1322d382aafbSBarry Smith Concepts: memory allocation 1323d382aafbSBarry Smith 1324d382aafbSBarry Smith M*/ 1325b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1326d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1327d382aafbSBarry Smith #else 1328e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1329e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1330e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1331d382aafbSBarry Smith #endif 1332d382aafbSBarry Smith 1333d382aafbSBarry Smith /*MC 1334d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1335d382aafbSBarry Smith 1336eca87e8dSBarry Smith Synopsis: 1337aaa7dc30SBarry Smith #include <petscsys.h> 1338eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1339eca87e8dSBarry Smith 1340eca87e8dSBarry Smith Not Collective 1341eca87e8dSBarry Smith 1342d382aafbSBarry Smith Input Parameter: 1343d382aafbSBarry Smith + m1 - memory to free 1344d382aafbSBarry Smith . m2 - 2nd memory to free 1345d382aafbSBarry Smith . m3 - 3rd memory to free 1346d382aafbSBarry Smith . m4 - 4th memory to free 1347d382aafbSBarry Smith . m5 - 5th memory to free 1348d382aafbSBarry Smith . m6 - 6th memory to free 1349d382aafbSBarry Smith - m7 - 7th memory to free 1350d382aafbSBarry Smith 1351d382aafbSBarry Smith 1352d382aafbSBarry Smith Level: developer 1353d382aafbSBarry Smith 1354d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1355d382aafbSBarry Smith 1356d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1357d382aafbSBarry Smith PetscMalloc7() 1358d382aafbSBarry Smith 1359d382aafbSBarry Smith Concepts: memory allocation 1360d382aafbSBarry Smith 1361d382aafbSBarry Smith M*/ 1362b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1363d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1364d382aafbSBarry Smith #else 1365e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1366e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 136706c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1368e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1369d382aafbSBarry Smith #endif 1370d382aafbSBarry Smith 1371efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1372efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1373efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1375d382aafbSBarry Smith 1376d382aafbSBarry Smith /* 1377a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1378a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1379a5057860SBarry Smith timing etc. 1380a5057860SBarry Smith */ 1381a5057860SBarry Smith typedef double PetscLogDouble; 1382a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1383a5057860SBarry Smith 1384a5057860SBarry Smith /* 138566d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1386d382aafbSBarry Smith */ 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13920acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1393efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1395574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1397d382aafbSBarry Smith 1398d382aafbSBarry Smith /*E 1399d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1400d382aafbSBarry Smith 1401d382aafbSBarry Smith Level: beginner 1402d382aafbSBarry Smith 1403d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1404d382aafbSBarry Smith 1405d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1406d382aafbSBarry Smith PetscDataTypeGetSize() 1407d382aafbSBarry Smith 1408d382aafbSBarry Smith E*/ 1409d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 14107e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 14116a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1412d382aafbSBarry Smith 1413d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1414d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1415d382aafbSBarry Smith #else 1416ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1417d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 141859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141959a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1420d382aafbSBarry Smith #else 1421d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1422d382aafbSBarry Smith #endif 1423d382aafbSBarry Smith #endif 1424ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1425d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 142659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142759a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1428d382aafbSBarry Smith #else 1429d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1430d382aafbSBarry Smith #endif 1431d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1432d382aafbSBarry Smith 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14368e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1437d382aafbSBarry Smith 1438d382aafbSBarry Smith /* 1439d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1440d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1441d382aafbSBarry Smith functionality and/or error checking. 1442d382aafbSBarry Smith */ 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1447d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14592f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14642c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 146747340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14686fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14696991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14706991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1472d382aafbSBarry Smith 1473573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1474573b0fb4SBarry Smith 1475d382aafbSBarry Smith /*S 1476d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1477d382aafbSBarry Smith 1478d382aafbSBarry Smith Level: intermediate 1479d382aafbSBarry Smith 1480d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1481d382aafbSBarry Smith S*/ 1482d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1483d382aafbSBarry Smith 1484014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1485014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1487d382aafbSBarry Smith 1488a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1489a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1490a53986e1SJed Brown 1491d382aafbSBarry Smith /* 1492d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1493d382aafbSBarry Smith */ 1494014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14957c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1496014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14972414b3c7SJed Brown #else 14982414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14992414b3c7SJed Brown #endif 15002414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1501014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1502014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1503d9822059SBarry Smith #else 1504d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1505d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1506d9822059SBarry Smith #endif 1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1508d382aafbSBarry Smith 1509014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1511eb3f98d2SBarry Smith 1512d382aafbSBarry Smith /*S 1513d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1514d382aafbSBarry Smith 1515d382aafbSBarry Smith Level: beginner 1516d382aafbSBarry Smith 15172981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1518d382aafbSBarry Smith 15192b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1520d382aafbSBarry Smith S*/ 1521d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1522d382aafbSBarry Smith 1523270bf2e7SJed Brown /*MC 1524127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1525127c8a3bSJed Brown 1526127c8a3bSJed Brown Level: developer 1527127c8a3bSJed Brown 1528127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1529127c8a3bSJed Brown 1530127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1531127c8a3bSJed Brown M*/ 1532127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1533127c8a3bSJed Brown 1534127c8a3bSJed Brown /*MC 1535270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1536270bf2e7SJed Brown 1537270bf2e7SJed Brown Level: developer 1538270bf2e7SJed Brown 1539270bf2e7SJed Brown Notes: 1540270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1541270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1542270bf2e7SJed Brown 15438dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1544270bf2e7SJed Brown M*/ 1545270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1546270bf2e7SJed Brown 1547d382aafbSBarry Smith /*S 1548140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1549d382aafbSBarry Smith by string name 1550d382aafbSBarry Smith 1551d382aafbSBarry Smith Level: advanced 1552d382aafbSBarry Smith 1553140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1554d382aafbSBarry Smith S*/ 1555140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1556d382aafbSBarry Smith 1557d382aafbSBarry Smith /*E 1558d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1559d382aafbSBarry Smith 1560d382aafbSBarry Smith Level: beginner 1561d382aafbSBarry Smith 1562*1cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 1563*1cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1564*1cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 1565*1cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1566*1cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1567d382aafbSBarry Smith 1568d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1569d382aafbSBarry Smith E*/ 1570d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1571d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1572d6a4318aSJed Brown 1573639ff905SBarry Smith /* 1574639ff905SBarry Smith Defines PETSc error handling. 1575639ff905SBarry Smith */ 1576639ff905SBarry Smith #include <petscerror.h> 1577d382aafbSBarry Smith 15780700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1579014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1580014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1582d382aafbSBarry Smith 1583d382aafbSBarry Smith /* 1584d382aafbSBarry Smith Routines that get memory usage information from the OS 1585d382aafbSBarry Smith */ 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1589b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1590d382aafbSBarry Smith 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1593d382aafbSBarry Smith 1594d382aafbSBarry Smith /* 1595d382aafbSBarry Smith Initialization of PETSc 1596d382aafbSBarry Smith */ 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1607d382aafbSBarry Smith 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1609607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1610d382aafbSBarry Smith 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith /* 1617d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16182981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1619d382aafbSBarry Smith */ 1620638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1621638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1622638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1623d382aafbSBarry Smith 1624d382aafbSBarry Smith /* 1625d382aafbSBarry Smith Functions that can act on any PETSc object. 1626d382aafbSBarry Smith */ 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1646bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1647bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1651d382aafbSBarry Smith 1652665c2dedSJed Brown #include <petscviewertypes.h> 1653639ff905SBarry Smith #include <petscoptions.h> 1654639ff905SBarry Smith 16550633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16560633abcbSJed Brown 1657639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1658c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1659dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1660639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16610005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16620005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1670685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1676d382aafbSBarry Smith 1677e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16787aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1679e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1680e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1681e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1682e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1683e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1684e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1685e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1686e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1687e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 168815681b3cSBarry Smith 1689ec7429eaSBarry Smith #else 16907aab2a10SBarry Smith #define PetscSAWsBlock() 0 1691e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1692e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1693e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1694e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1695e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1696e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1697e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1698e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1699e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 170015681b3cSBarry Smith 1701ec7429eaSBarry Smith #endif 1702b90c6cbeSBarry Smith 17037d5d4d99SBarry Smith typedef void* PetscDLHandle; 1704e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 170582b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 170682b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 170782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17087d5d4d99SBarry Smith 17095fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1710a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17115fe58b6fSBarry Smith #endif 17127eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1713a64a8e02SBarry Smith 1714d382aafbSBarry Smith /*S 1715140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1716d382aafbSBarry Smith 17171d0fab5eSBarry Smith Level: developer 1718d382aafbSBarry Smith 17191d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17201d0fab5eSBarry Smith 1721140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1722d382aafbSBarry Smith S*/ 1723140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1724d382aafbSBarry Smith 1725140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1726140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1727140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1728140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1729140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1730140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1731d382aafbSBarry Smith 1732d382aafbSBarry Smith /* 1733503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1734d382aafbSBarry Smith link libraries that will be loaded as needed. 1735d382aafbSBarry Smith */ 1736a240a19fSJed Brown 1737a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1738a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17401c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17411c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1742140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1743140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1744140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1745140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1746d382aafbSBarry Smith 1747d382aafbSBarry Smith /*S 1748d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1749d382aafbSBarry Smith 1750d382aafbSBarry Smith Level: advanced 1751d382aafbSBarry Smith 1752d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1753d382aafbSBarry Smith S*/ 1754d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1755014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1758014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith /* 1765d382aafbSBarry Smith Useful utility routines 1766d382aafbSBarry Smith */ 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1773d382aafbSBarry Smith 1774503cfb0cSBarry Smith /* 1775ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1776503cfb0cSBarry Smith 1777503cfb0cSBarry Smith Notes: This is useful in cases like 1778503cfb0cSBarry Smith $ int *a; 1779ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1780*1cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1781503cfb0cSBarry Smith */ 1782d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1783503cfb0cSBarry Smith 1784d382aafbSBarry Smith /*MC 1785d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1786d382aafbSBarry Smith 1787d382aafbSBarry Smith Synopsis: 1788aaa7dc30SBarry Smith #include <petscsys.h> 1789d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1790d382aafbSBarry Smith 1791eca87e8dSBarry Smith Not Collective 1792eca87e8dSBarry Smith 1793d382aafbSBarry Smith Input Parameters: 1794d382aafbSBarry Smith . format - the usual printf() format string 1795d382aafbSBarry Smith 1796d382aafbSBarry Smith Level: developer 1797d382aafbSBarry Smith 1798d382aafbSBarry Smith Fortran Note: 1799d382aafbSBarry Smith This routine is not supported in Fortran. 1800d382aafbSBarry Smith 1801d382aafbSBarry Smith Concepts: help messages^printing 1802d382aafbSBarry Smith Concepts: printing^help messages 1803d382aafbSBarry Smith 1804d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1805d382aafbSBarry Smith M*/ 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1807d382aafbSBarry Smith 1808fcfd50ebSBarry Smith /* 1809fcfd50ebSBarry Smith Defines PETSc profiling. 1810fcfd50ebSBarry Smith */ 18112c8e378dSBarry Smith #include <petsclog.h> 1812fcfd50ebSBarry Smith 1813fcfd50ebSBarry Smith /* 1814fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1815fcfd50ebSBarry Smith */ 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1823fcfd50ebSBarry Smith 1824fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1825fcfd50ebSBarry Smith #include <stdarg.h> 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1829fcfd50ebSBarry Smith 1830fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1832fcfd50ebSBarry Smith #endif 1833fcfd50ebSBarry Smith 1834f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1835f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1836f1d7fe2eSBarry Smith #endif 1837f1d7fe2eSBarry Smith 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1841d382aafbSBarry Smith 1842d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 184496a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 184574ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1846d382aafbSBarry Smith #endif 1847d382aafbSBarry Smith 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18500ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1855d382aafbSBarry Smith 1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1857d382aafbSBarry Smith 1858d382aafbSBarry Smith /*S 1859d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith Level: advanced 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1864d382aafbSBarry Smith S*/ 1865014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1866d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1870014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1871014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith /* 1874d382aafbSBarry Smith For use in debuggers 1875d382aafbSBarry Smith */ 1876014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1877014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1881d382aafbSBarry Smith 1882a663daf8SBarry Smith #include <stddef.h> 1883a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1884d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1885d382aafbSBarry Smith #include <stdlib.h> 1886d382aafbSBarry Smith #endif 18876c7e564aSBarry Smith 18884a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1889d382aafbSBarry Smith #include <xmmintrin.h> 1890d382aafbSBarry Smith #endif 1891d382aafbSBarry Smith 1892fcfd50ebSBarry Smith #undef __FUNCT__ 1893fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1894d382aafbSBarry Smith /*@C 1895d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1896d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1897d382aafbSBarry Smith PetscMemmove() in that case. 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith Not Collective 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith Input Parameters: 1902d382aafbSBarry Smith + b - pointer to initial memory space 1903d382aafbSBarry Smith - n - length (in bytes) of space to copy 1904d382aafbSBarry Smith 1905d382aafbSBarry Smith Output Parameter: 1906d382aafbSBarry Smith . a - pointer to copy space 1907d382aafbSBarry Smith 1908d382aafbSBarry Smith Level: intermediate 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith Compile Option: 1911d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1912d382aafbSBarry Smith for memory copies on double precision values. 1913d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1914d382aafbSBarry Smith for memory copies on double precision values. 1915d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1916d382aafbSBarry Smith for memory copies on double precision values. 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith Note: 1919d382aafbSBarry Smith This routine is analogous to memcpy(). 1920d382aafbSBarry Smith 1921503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1922503cfb0cSBarry Smith 1923d382aafbSBarry Smith Concepts: memory^copying 1924d382aafbSBarry Smith Concepts: copying^memory 1925d382aafbSBarry Smith 1926d382aafbSBarry Smith .seealso: PetscMemmove() 1927d382aafbSBarry Smith 1928d382aafbSBarry Smith @*/ 19297087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1930d382aafbSBarry Smith { 1931d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1932c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1933c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1934a7e36092SMatthew G Knepley PetscFunctionBegin; 1935e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1936e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1937a7e36092SMatthew G Knepley #else 1938d382aafbSBarry Smith PetscFunctionBegin; 1939a7e36092SMatthew G Knepley #endif 1940a47a537aSLisandro Dalcin if (a != b && n > 0) { 1941d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1942e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1943d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1944d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1947c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1948d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1949d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1950c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1951c5df96a5SBarry Smith PetscErrorCode ierr; 1952c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19538b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1954d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1955d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1956d382aafbSBarry Smith #else 1957d382aafbSBarry Smith size_t i; 1958d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1959d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1960d382aafbSBarry Smith #endif 1961d382aafbSBarry Smith } else { 1962d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1963d382aafbSBarry Smith } 1964d382aafbSBarry Smith #else 1965d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1966d382aafbSBarry Smith #endif 1967d382aafbSBarry Smith } 1968d382aafbSBarry Smith PetscFunctionReturn(0); 1969d382aafbSBarry Smith } 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith /*@C 1972d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1973d382aafbSBarry Smith 1974d382aafbSBarry Smith Not Collective 1975d382aafbSBarry Smith 1976d382aafbSBarry Smith Input Parameters: 1977d382aafbSBarry Smith + a - pointer to beginning memory location 1978d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith Level: intermediate 1981d382aafbSBarry Smith 1982d382aafbSBarry Smith Compile Option: 1983d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1984d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1985d382aafbSBarry Smith 1986503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1987503cfb0cSBarry Smith 1988d382aafbSBarry Smith Concepts: memory^zeroing 1989d382aafbSBarry Smith Concepts: zeroing^memory 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith .seealso: PetscMemcpy() 1992d382aafbSBarry Smith @*/ 19937087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1994d382aafbSBarry Smith { 1995d382aafbSBarry Smith if (n > 0) { 1996d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1997e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1998d382aafbSBarry Smith #endif 1999d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2000d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2001d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2002d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2003d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2004d382aafbSBarry Smith } else { 2005d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2006d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2007d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2008d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2009d382aafbSBarry Smith } else { 2010d382aafbSBarry Smith #endif 2011d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2012d382aafbSBarry Smith bzero((char *)a,n); 2013d382aafbSBarry Smith #else 2014d382aafbSBarry Smith memset((char*)a,0,n); 2015d382aafbSBarry Smith #endif 2016d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2017d382aafbSBarry Smith } 2018d382aafbSBarry Smith #endif 2019d382aafbSBarry Smith } 2020d382aafbSBarry Smith return 0; 2021d382aafbSBarry Smith } 2022d382aafbSBarry Smith 2023d382aafbSBarry Smith /*MC 2024d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2025d382aafbSBarry Smith 2026eca87e8dSBarry Smith Synopsis: 2027aaa7dc30SBarry Smith #include <petscsys.h> 2028eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2029eca87e8dSBarry Smith 2030d382aafbSBarry Smith Not Collective 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith Input Parameters: 2033d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2034d382aafbSBarry Smith . n - number of elements to fetch 2035d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203650d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith Level: developer 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith Notes: 2041d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2042d382aafbSBarry Smith 204350d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204450d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204550d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 204763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 204863cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2051d382aafbSBarry Smith address). 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith Concepts: memory 2054d382aafbSBarry Smith M*/ 2055d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2056d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2057d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2058d382aafbSBarry Smith } while (0) 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith /* 2061d382aafbSBarry Smith Determine if some of the kernel computation routines use 2062d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2063d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2064d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2065e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2066d382aafbSBarry Smith */ 2067d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2068d382aafbSBarry Smith 2069d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2070d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2071d382aafbSBarry Smith #endif 2072d382aafbSBarry Smith 20735a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20745a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2075d382aafbSBarry Smith #endif 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2078d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2082d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2086d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2090d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2094d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2095d382aafbSBarry Smith #endif 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2098d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2099d382aafbSBarry Smith #endif 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2102d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2106d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2110d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2111d382aafbSBarry Smith #endif 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2114d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2115d382aafbSBarry Smith #endif 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2118d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2122d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2123d382aafbSBarry Smith #endif 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith #endif 2126d382aafbSBarry Smith 2127d382aafbSBarry Smith /* 2128d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2129d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2130d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2131d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2132d382aafbSBarry Smith ugly extern "C" {} wrappers. 2133d382aafbSBarry Smith */ 2134d382aafbSBarry Smith #if defined(__cplusplus) 2135d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2136d382aafbSBarry Smith #define EXTERN_C_END } 2137d382aafbSBarry Smith #else 2138d382aafbSBarry Smith #define EXTERN_C_BEGIN 2139d382aafbSBarry Smith #define EXTERN_C_END 2140d382aafbSBarry Smith #endif 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith /*MC 2145d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2146d382aafbSBarry Smith communication 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith Level: beginner 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2153d382aafbSBarry Smith M*/ 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith /*MC 2156d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2157d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2158*1cc8b206SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith Level: beginner 2161d382aafbSBarry Smith 2162*1cc8b206SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL 2163d382aafbSBarry Smith M*/ 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith /*MC 21668619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21678619c96cSJed Brown 21688619c96cSJed Brown Synopsis: 21698619c96cSJed Brown #include <petscsys.h> 21708619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21718619c96cSJed Brown 21728619c96cSJed Brown Level: beginner 21738619c96cSJed Brown 21748619c96cSJed Brown Note: 21758cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21768619c96cSJed Brown 21778619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21788619c96cSJed Brown M*/ 21798619c96cSJed Brown 21808619c96cSJed Brown /*MC 2181d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith Level: beginner 2184d382aafbSBarry Smith 2185*1cc8b206SBarry Smith .seealso: PetscScalar 2186d382aafbSBarry Smith M*/ 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith /*MC 2189d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith Level: beginner 2192d382aafbSBarry Smith 2193d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2194d382aafbSBarry Smith pass this value 2195d382aafbSBarry Smith 2196*1cc8b206SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT 2197d382aafbSBarry Smith M*/ 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2200d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2201014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2202014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2203d382aafbSBarry Smith #else 2204d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2205d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2206d382aafbSBarry Smith #endif 2207d382aafbSBarry Smith #endif 2208d382aafbSBarry Smith 2209d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2212d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2213d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2214d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2215d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2216d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2217d382aafbSBarry Smith 2218c5df96a5SBarry Smith #undef __FUNCT__ 2219c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 222061b0d812SBarry Smith /*@C 222161b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 222261b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 222361b0d812SBarry Smith 222461b0d812SBarry Smith Not Collective 222561b0d812SBarry Smith 222661b0d812SBarry Smith Input Parameter: 222761b0d812SBarry Smith . a - the PetscInt value 222861b0d812SBarry Smith 222961b0d812SBarry Smith Output Parameter: 223061b0d812SBarry Smith . b - the resulting PetscBLASInt value 223161b0d812SBarry Smith 223261b0d812SBarry Smith Level: advanced 223361b0d812SBarry Smith 223461b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 223561b0d812SBarry Smith @*/ 2236c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2237c5df96a5SBarry Smith { 2238c5df96a5SBarry Smith PetscFunctionBegin; 2239ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2240c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2241c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2242c5df96a5SBarry Smith #endif 2243c5df96a5SBarry Smith PetscFunctionReturn(0); 2244c5df96a5SBarry Smith } 2245c5df96a5SBarry Smith 22464dc2109aSBarry Smith #undef __FUNCT__ 22474dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 224861b0d812SBarry Smith /*@C 224961b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 225061b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 225161b0d812SBarry Smith 225261b0d812SBarry Smith Not Collective 225361b0d812SBarry Smith 225461b0d812SBarry Smith Input Parameter: 225561b0d812SBarry Smith . a - the PetscInt value 225661b0d812SBarry Smith 225761b0d812SBarry Smith Output Parameter: 225861b0d812SBarry Smith . b - the resulting PetscMPIInt value 225961b0d812SBarry Smith 226061b0d812SBarry Smith Level: advanced 226161b0d812SBarry Smith 226261b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 226361b0d812SBarry Smith @*/ 22644dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22654dc2109aSBarry Smith { 22664dc2109aSBarry Smith PetscFunctionBegin; 2267ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22684dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22694dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22704dc2109aSBarry Smith #endif 22714dc2109aSBarry Smith PetscFunctionReturn(0); 22724dc2109aSBarry Smith } 22734dc2109aSBarry Smith 22742f18eb33SBarry Smith #define PetscIntMult64bit(a,b) ((Petsc64bitInt)(a))*((Petsc64bitInt)(b)) 22752f18eb33SBarry Smith 22762f18eb33SBarry Smith #undef __FUNCT__ 22772f18eb33SBarry Smith #define __FUNCT__ "PetscRealIntMultTruncate" 22782f18eb33SBarry Smith /*@C 22792f18eb33SBarry Smith 22802f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22812f18eb33SBarry Smith 22822f18eb33SBarry Smith Not Collective 22832f18eb33SBarry Smith 22842f18eb33SBarry Smith Input Parameter: 22852f18eb33SBarry Smith + a - the PetscReal value 22862f18eb33SBarry Smith - b - the second value 22872f18eb33SBarry Smith 22882f18eb33SBarry Smith Output Parameter: 22892f18eb33SBarry Smith . c - the result as a PetscInt value 22902f18eb33SBarry Smith 22912f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 22922f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 22932f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22942f18eb33SBarry Smith 22952f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 22962f18eb33SBarry Smith 22972f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 22982f18eb33SBarry Smith 22992f18eb33SBarry Smith Level: advanced 23002f18eb33SBarry Smith 23012f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23022f18eb33SBarry Smith @*/ 23032f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23042f18eb33SBarry Smith { 23052f18eb33SBarry Smith Petsc64bitInt r; 23062f18eb33SBarry Smith 23072f18eb33SBarry Smith r = (Petsc64bitInt) (a*b); 23082f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23092f18eb33SBarry Smith return (PetscInt) r; 23102f18eb33SBarry Smith } 23112f18eb33SBarry Smith 23122f18eb33SBarry Smith #undef __FUNCT__ 23132f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultTruncate" 23142f18eb33SBarry Smith /*@C 23152f18eb33SBarry Smith 23162f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23172f18eb33SBarry Smith 23182f18eb33SBarry Smith Not Collective 23192f18eb33SBarry Smith 23202f18eb33SBarry Smith Input Parameter: 23212f18eb33SBarry Smith + a - the PetscInt value 23222f18eb33SBarry Smith - b - the second value 23232f18eb33SBarry Smith 23242f18eb33SBarry Smith Output Parameter: 23252f18eb33SBarry Smith . c - the result as a PetscInt value 23262f18eb33SBarry Smith 23272f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 23282f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23292f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23302f18eb33SBarry Smith 23312f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23322f18eb33SBarry Smith 23332f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23342f18eb33SBarry Smith 23352f18eb33SBarry Smith Level: advanced 23362f18eb33SBarry Smith 23372f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23382f18eb33SBarry Smith @*/ 23392f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23402f18eb33SBarry Smith { 23412f18eb33SBarry Smith Petsc64bitInt r; 23422f18eb33SBarry Smith 23432f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 23442f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23452f18eb33SBarry Smith return (PetscInt) r; 23462f18eb33SBarry Smith } 23472f18eb33SBarry Smith 23482f18eb33SBarry Smith #undef __FUNCT__ 2349f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumTruncate" 2350f91af8c7SBarry Smith /*@C 2351f91af8c7SBarry Smith 2352f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2353f91af8c7SBarry Smith 2354f91af8c7SBarry Smith Not Collective 2355f91af8c7SBarry Smith 2356f91af8c7SBarry Smith Input Parameter: 2357f91af8c7SBarry Smith + a - the PetscInt value 2358f91af8c7SBarry Smith - b - the second value 2359f91af8c7SBarry Smith 2360f91af8c7SBarry Smith Output Parameter: 2361f91af8c7SBarry Smith . c - the result as a PetscInt value 2362f91af8c7SBarry Smith 2363f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 2364f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2365f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2366f91af8c7SBarry Smith 2367f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2368f91af8c7SBarry Smith 2369f91af8c7SBarry Smith Level: advanced 2370f91af8c7SBarry Smith 2371f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2372f91af8c7SBarry Smith @*/ 2373f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2374f91af8c7SBarry Smith { 2375f91af8c7SBarry Smith Petsc64bitInt r; 2376f91af8c7SBarry Smith 2377f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2378f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2379f91af8c7SBarry Smith return (PetscInt) r; 2380f91af8c7SBarry Smith } 2381f91af8c7SBarry Smith 2382f91af8c7SBarry Smith #undef __FUNCT__ 23832f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultError" 23842f18eb33SBarry Smith /*@C 23852f18eb33SBarry Smith 23862f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23872f18eb33SBarry Smith 23882f18eb33SBarry Smith Not Collective 23892f18eb33SBarry Smith 23902f18eb33SBarry Smith Input Parameter: 23912f18eb33SBarry Smith + a - the PetscInt value 23922f18eb33SBarry Smith - b - the second value 23932f18eb33SBarry Smith 23942f18eb33SBarry Smith Output Parameter:ma 23952f18eb33SBarry Smith . c - the result as a PetscInt value 23962f18eb33SBarry Smith 23972f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 23982f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 23992f18eb33SBarry Smith 24002f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 24012f18eb33SBarry Smith 24022f18eb33SBarry Smith Level: advanced 24032f18eb33SBarry Smith 24042f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 24052f18eb33SBarry Smith @*/ 24062f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24072f18eb33SBarry Smith { 24082f18eb33SBarry Smith Petsc64bitInt r; 24092f18eb33SBarry Smith 24102f18eb33SBarry Smith PetscFunctionBegin; 24112f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 24122f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24132f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24142f18eb33SBarry Smith #endif 2415f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2416f91af8c7SBarry Smith PetscFunctionReturn(0); 2417f91af8c7SBarry Smith } 2418f91af8c7SBarry Smith 2419f91af8c7SBarry Smith #undef __FUNCT__ 2420f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumError" 2421f91af8c7SBarry Smith /*@C 2422f91af8c7SBarry Smith 2423f91af8c7SBarry Smith PetscIntSumError - Computes the product of two positive PetscInt and generates an error with overflow. 2424f91af8c7SBarry Smith 2425f91af8c7SBarry Smith Not Collective 2426f91af8c7SBarry Smith 2427f91af8c7SBarry Smith Input Parameter: 2428f91af8c7SBarry Smith + a - the PetscInt value 2429f91af8c7SBarry Smith - b - the second value 2430f91af8c7SBarry Smith 2431f91af8c7SBarry Smith Output Parameter:ma 2432f91af8c7SBarry Smith . c - the result as a PetscInt value 2433f91af8c7SBarry Smith 2434f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 2435f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2436f91af8c7SBarry Smith 2437f91af8c7SBarry Smith Level: advanced 2438f91af8c7SBarry Smith 2439f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2440f91af8c7SBarry Smith @*/ 2441f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2442f91af8c7SBarry Smith { 2443f91af8c7SBarry Smith Petsc64bitInt r; 2444f91af8c7SBarry Smith 2445f91af8c7SBarry Smith PetscFunctionBegin; 2446f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2447f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2448f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2449f91af8c7SBarry Smith #endif 2450f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24512f18eb33SBarry Smith PetscFunctionReturn(0); 24522f18eb33SBarry Smith } 2453c5df96a5SBarry Smith 2454d382aafbSBarry Smith /* 24552981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2456d382aafbSBarry Smith */ 2457d382aafbSBarry Smith #if defined(hz) 2458d382aafbSBarry Smith #undef hz 2459d382aafbSBarry Smith #endif 2460d382aafbSBarry Smith 2461d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2462d382aafbSBarry Smith 2463d382aafbSBarry Smith 2464d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2465d382aafbSBarry Smith #include <limits.h> 2466d382aafbSBarry Smith #endif 2467d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2468d382aafbSBarry Smith #include <sys/param.h> 2469d382aafbSBarry Smith #endif 2470d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2471d382aafbSBarry Smith #include <sys/types.h> 2472d382aafbSBarry Smith #endif 2473d382aafbSBarry Smith #if defined(MAXPATHLEN) 2474d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2475d382aafbSBarry Smith #elif defined(MAX_PATH) 2476d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2477d382aafbSBarry Smith #elif defined(_MAX_PATH) 2478d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2479d382aafbSBarry Smith #else 2480d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2481d382aafbSBarry Smith #endif 2482d382aafbSBarry Smith 2483d382aafbSBarry Smith /*MC 2484d382aafbSBarry Smith 2485d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2486d382aafbSBarry Smith 2487d382aafbSBarry Smith $ 1) classic Fortran 77 style 2488af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2489d382aafbSBarry Smith $ XXX variablename 2490d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2491d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2492d382aafbSBarry Smith $ 2493d382aafbSBarry Smith $ 2) classic Fortran 90 style 2494af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2495af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2496d382aafbSBarry Smith $ XXX variablename 2497d382aafbSBarry Smith $ 2498d382aafbSBarry Smith $ 3) Using Fortran modules 2499af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2500d382aafbSBarry Smith $ use petscXXXX 2501d382aafbSBarry Smith $ XXX variablename 2502d382aafbSBarry Smith $ 2503d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2504af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2505d382aafbSBarry Smith $ use petscXXXX 2506d382aafbSBarry Smith $ type(XXX) variablename 2507e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2508d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2509d382aafbSBarry Smith 2510d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2511d382aafbSBarry Smith 2512d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2513d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2514d382aafbSBarry Smith $ integer variablename 2515d382aafbSBarry Smith $ 2516d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2517d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2518d382aafbSBarry Smith 2519d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2520d382aafbSBarry Smith for only a few PETSc functions. 2521d382aafbSBarry Smith 2522d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2523d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2524d382aafbSBarry Smith you cannot have something like 2525d382aafbSBarry Smith $ PetscInt row,col 2526d382aafbSBarry Smith $ PetscScalar val 2527d382aafbSBarry Smith $ ... 2528d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2529d382aafbSBarry Smith You must instead have 2530d382aafbSBarry Smith $ PetscInt row(1),col(1) 2531d382aafbSBarry Smith $ PetscScalar val(1) 2532d382aafbSBarry Smith $ ... 2533d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2534d382aafbSBarry Smith 2535d382aafbSBarry Smith 2536d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2537d382aafbSBarry Smith 2538af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2539af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2540d382aafbSBarry Smith 2541af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2542af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2543af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2544d382aafbSBarry Smith 2545af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2546e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2547d382aafbSBarry Smith 2548af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2549d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2550d382aafbSBarry Smith 2551af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2552d382aafbSBarry Smith automatically by "make allfortranstubs". 2553d382aafbSBarry Smith 2554af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2555af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2556d382aafbSBarry Smith include their predecessors 2557d382aafbSBarry Smith 2558d382aafbSBarry Smith Level: beginner 2559d382aafbSBarry Smith 2560d382aafbSBarry Smith M*/ 2561d382aafbSBarry Smith 2562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 256827710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2569d382aafbSBarry Smith 2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 257260e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 257717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 257817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 258117df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2584745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 258921e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2590e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2591d382aafbSBarry Smith 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2594d382aafbSBarry Smith 259576bdecfbSBarry Smith /*J 2596d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2597d382aafbSBarry Smith 2598d382aafbSBarry Smith Level: beginner 2599d382aafbSBarry Smith 2600e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2601d382aafbSBarry Smith with the option --download-sprng 2602d382aafbSBarry Smith 26038f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 260476bdecfbSBarry Smith J*/ 260519fd82e9SBarry Smith typedef const char* PetscRandomType; 2606d382aafbSBarry Smith #define PETSCRAND "rand" 2607d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2608d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2609c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2610d382aafbSBarry Smith 2611d382aafbSBarry Smith /* Logging support */ 2612014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2613d382aafbSBarry Smith 2614607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2615d382aafbSBarry Smith 2616d382aafbSBarry Smith /*S 2617d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2618d382aafbSBarry Smith 2619d382aafbSBarry Smith Level: intermediate 2620d382aafbSBarry Smith 2621d382aafbSBarry Smith Concepts: random numbers 2622d382aafbSBarry Smith 2623d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2624d382aafbSBarry Smith S*/ 2625d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2626d382aafbSBarry Smith 2627d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2628140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2629d382aafbSBarry Smith 2630bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 263119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 263319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2634685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2636d382aafbSBarry Smith 2637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2646d382aafbSBarry Smith 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 265497540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 265597540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2656d382aafbSBarry Smith 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2668e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2669d382aafbSBarry Smith 2670d382aafbSBarry Smith /* 2671d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2672d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2673d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2674d382aafbSBarry Smith PetscBinarySeek(). 2675d382aafbSBarry Smith */ 2676d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2677d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2678d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2679d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2680d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2681d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2682d382aafbSBarry Smith 2683d382aafbSBarry Smith /*E 2684d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2685d382aafbSBarry Smith 2686d382aafbSBarry Smith Level: advanced 2687d382aafbSBarry Smith 2688d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2689d382aafbSBarry Smith E*/ 2690d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2694d382aafbSBarry Smith 2695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2698014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2701d382aafbSBarry Smith 2702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2706014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2707cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2708cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2709d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2710d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2711d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2712d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27136afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27146afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27156afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27166afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27176afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2718d382aafbSBarry Smith 27196145cd65SJed Brown /*E 27206145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27216145cd65SJed Brown 27226145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27236145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27246145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27256145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27266145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27271654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27281654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27296145cd65SJed Brown 27306145cd65SJed Brown Level: developer 27316145cd65SJed Brown 27326145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27336145cd65SJed Brown E*/ 27346145cd65SJed Brown typedef enum { 27356145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27366145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27371654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 273812af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27396145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27406145cd65SJed Brown } PetscBuildTwoSidedType; 27416145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27426145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27436145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27446145cd65SJed Brown 2745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2746d382aafbSBarry Smith 2747d382aafbSBarry Smith /*E 2748d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2749d382aafbSBarry Smith 2750d382aafbSBarry Smith Level: beginner 2751d382aafbSBarry Smith 2752d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2753d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2754d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2755d382aafbSBarry Smith E*/ 27566fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2757d382aafbSBarry Smith 2758d382aafbSBarry Smith /*MC 2759d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2760d382aafbSBarry Smith 2761d382aafbSBarry Smith Level: beginner 2762d382aafbSBarry Smith 2763d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2764eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2765eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2766d382aafbSBarry Smith 2767d382aafbSBarry Smith M*/ 2768d382aafbSBarry Smith 2769d382aafbSBarry Smith /*MC 2770d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2771d382aafbSBarry Smith value into that location 2772d382aafbSBarry Smith 2773d382aafbSBarry Smith Level: beginner 2774d382aafbSBarry Smith 2775d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2776eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2777eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2778d382aafbSBarry Smith 2779d382aafbSBarry Smith M*/ 2780d382aafbSBarry Smith 2781d382aafbSBarry Smith /*MC 2782d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2783d382aafbSBarry Smith 2784d382aafbSBarry Smith Level: beginner 2785d382aafbSBarry Smith 2786d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2787d382aafbSBarry Smith 2788d382aafbSBarry Smith M*/ 2789d382aafbSBarry Smith 2790ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2791ce94432eSBarry Smith 279245487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 279345487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 279445487dadSJed Brown 2795d382aafbSBarry Smith /*S 2796306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2797306c2d5bSBarry Smith 2798306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2799306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 280036be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2801306c2d5bSBarry Smith 2802306c2d5bSBarry Smith Sample Usage: 2803306c2d5bSBarry Smith PetscSubcommCreate() 2804306c2d5bSBarry Smith PetscSubcommSetNumber() 2805306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2806306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2807306c2d5bSBarry Smith PetscSubcommDestroy() 2808d382aafbSBarry Smith 2809d382aafbSBarry Smith Level: advanced 2810d382aafbSBarry Smith 2811d382aafbSBarry Smith Concepts: communicator, create 2812306c2d5bSBarry Smith 2813306c2d5bSBarry Smith Notes: 2814306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2815306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2816306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2817306c2d5bSBarry Smith 2818306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2819306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2820306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2821306c2d5bSBarry Smith 2822306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2823306c2d5bSBarry Smith are performed. 2824306c2d5bSBarry Smith 2825306c2d5bSBarry Smith 2826306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2827306c2d5bSBarry Smith 2828d382aafbSBarry Smith S*/ 2829d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2830d382aafbSBarry Smith 2831d382aafbSBarry Smith struct _n_PetscSubcomm { 2832d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2833d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2834306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 283545487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 283645487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2837708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 283845487dadSJed Brown PetscSubcommType type; 2839d382aafbSBarry Smith }; 2840d382aafbSBarry Smith 2841c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2842306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 284336be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2846014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 284865d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2849053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2850f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2851d382aafbSBarry Smith 28520f453b92SJed Brown /*S 28530f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28540f453b92SJed Brown 28550f453b92SJed Brown Level: developer 28560f453b92SJed Brown 28570f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28580f453b92SJed Brown S*/ 28590f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 286013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28610f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 286213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2863137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2864137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2865137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 286613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 286713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28680f453b92SJed Brown 2869471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2870471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2871471ecdacSJed Brown * possible. */ 287235005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2873d382aafbSBarry Smith 2874268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 28751f817a21SBarry Smith #undef __FUNCT__ 28761f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 28771f817a21SBarry Smith /*@C 28781f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28791f817a21SBarry Smith 28801f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28811f817a21SBarry Smith 28821f817a21SBarry Smith Input Parameters: 28831f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28841f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28851f817a21SBarry Smith 2886850545d0SSatish Balay Level: intermediate 2887850545d0SSatish Balay 28881f817a21SBarry Smith Options Database: 28891f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 28901f817a21SBarry Smith @*/ 2891dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2892dff31646SBarry Smith { 2893dff31646SBarry Smith size_t len; 2894dff31646SBarry Smith char *vstring; 2895dff31646SBarry Smith PetscErrorCode ierr; 2896dff31646SBarry Smith 28971f817a21SBarry Smith PetscFunctionBegin; 28988d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2899dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 290035005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2901dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2902dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29031f817a21SBarry Smith PetscFunctionReturn(0); 2904dff31646SBarry Smith } 2905dff31646SBarry Smith 2906b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2907fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2908fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2909f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2910fe278a28SBarry Smith 2911f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2912f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2913b967cddfSBarry Smith 291404102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2915dff31646SBarry Smith 291668e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29175dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2918d382aafbSBarry Smith 2919b2566f29SBarry Smith 2920b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2921b2566f29SBarry Smith /* 2922b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2923b2566f29SBarry Smith */ 29248f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2925b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2926b2566f29SBarry Smith #else 2927b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2928b2566f29SBarry Smith #endif 2929b2566f29SBarry Smith 2930d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2931d382aafbSBarry Smith #undef __FUNCT__ 2932d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2933d382aafbSBarry Smith 2934d382aafbSBarry Smith #endif 2935