1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11d382aafbSBarry Smith in the conf/variables definition of PETSC_INCLUDE 12d382aafbSBarry Smith */ 13d382aafbSBarry Smith #include "petscconf.h" 14d382aafbSBarry Smith #include "petscfix.h" 15d382aafbSBarry Smith 1673fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1773fca5a0SBarry Smith /* 1873fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 1973fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2073fca5a0SBarry Smith */ 2173fca5a0SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) 2273fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2373fca5a0SBarry Smith #endif 2473fca5a0SBarry Smith #if defined(PETSC__BSD_SOURCE) 2573fca5a0SBarry Smith #define _BSD_SOURCE 2673fca5a0SBarry Smith #endif 2773fca5a0SBarry Smith #endif 2873fca5a0SBarry Smith 29d382aafbSBarry Smith /* ========================================================================== */ 30d382aafbSBarry Smith /* 31d382aafbSBarry Smith This facilitates using C version of PETSc from C++ and 32e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 33d382aafbSBarry Smith */ 34d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 35d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 36d382aafbSBarry Smith #endif 371ec50b02SJed Brown 381ec50b02SJed Brown #if defined(__cplusplus) 391ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 401ec50b02SJed Brown #else 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 421ec50b02SJed Brown #endif 43d382aafbSBarry Smith 44d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 45d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 46d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 47d382aafbSBarry Smith #else 48d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 49d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 50d382aafbSBarry Smith #endif 51d382aafbSBarry Smith /* ========================================================================== */ 52d382aafbSBarry Smith /* 53d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 54d382aafbSBarry Smith Web page 55d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 56d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 57d382aafbSBarry Smith src/docs/website/index.html. 58d382aafbSBarry Smith */ 59d382aafbSBarry Smith #include "petscversion.h" 60301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 61d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 62301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 63d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 64301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 65d382aafbSBarry Smith #else 66301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 67301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 68d382aafbSBarry Smith #endif 69d382aafbSBarry Smith 70d382aafbSBarry Smith /*MC 71d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 72d382aafbSBarry Smith 73d382aafbSBarry Smith Input Parameter: 74d382aafbSBarry Smith . len - length of the string 75d382aafbSBarry Smith 76d382aafbSBarry Smith Output Parameter: 77d382aafbSBarry Smith . version - version string 78d382aafbSBarry Smith 79d382aafbSBarry Smith Level: developer 80d382aafbSBarry Smith 81d382aafbSBarry Smith Usage: 82d382aafbSBarry Smith char version[256]; 83d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 84d382aafbSBarry Smith 85d382aafbSBarry Smith Fortran Note: 86d382aafbSBarry Smith This routine is not supported in Fortran. 87d382aafbSBarry Smith 88d382aafbSBarry Smith .seealso: PetscGetProgramName() 89d382aafbSBarry Smith 90d382aafbSBarry Smith M*/ 91d382aafbSBarry Smith 92d382aafbSBarry Smith /* ========================================================================== */ 93d382aafbSBarry Smith 94d382aafbSBarry Smith /* 95d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 96d382aafbSBarry Smith 97d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 98d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 99d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 100d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 101d382aafbSBarry Smith mpicxx.h directly in their code 102d382aafbSBarry Smith */ 103d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 104d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 105d382aafbSBarry Smith #include "mpi.h" 10665013866SBarry Smith 107d382aafbSBarry Smith /* 108d382aafbSBarry Smith Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 110d382aafbSBarry Smith 111d382aafbSBarry Smith The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 112d382aafbSBarry Smith */ 113d382aafbSBarry Smith #include <stdio.h> 114d382aafbSBarry Smith 115d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 116d382aafbSBarry Smith #if !defined(MPIAPI) 117d382aafbSBarry Smith #define MPIAPI 118d382aafbSBarry Smith #endif 119d382aafbSBarry Smith 120b3506946SBarry Smith 121d382aafbSBarry Smith /*MC 122d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 123d382aafbSBarry Smith 124d382aafbSBarry Smith Level: beginner 125d382aafbSBarry Smith 126d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 127d382aafbSBarry Smith M*/ 128d382aafbSBarry Smith typedef int PetscErrorCode; 129d382aafbSBarry Smith 130d382aafbSBarry Smith /*MC 131d382aafbSBarry Smith 132503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 133d382aafbSBarry Smith (internal integer in the data structure used for error 134d382aafbSBarry Smith checking). These are all defined by an offset from the lowest 1350700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 136d382aafbSBarry Smith 137d382aafbSBarry Smith Level: advanced 138d382aafbSBarry Smith 1390700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 140d382aafbSBarry Smith M*/ 1410700a824SBarry Smith typedef int PetscClassId; 142d382aafbSBarry Smith 143d382aafbSBarry Smith 144d382aafbSBarry Smith /*MC 145d382aafbSBarry Smith PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 146d382aafbSBarry Smith 147d382aafbSBarry Smith Level: intermediate 148d382aafbSBarry Smith 149d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1503b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 151287e6e24SBarry Smith (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 1523b2a8c54SBarry Smith 1533b2a8c54SBarry Smith PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 1543b2a8c54SBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 1553b2a8c54SBarry Smith 1563b2a8c54SBarry Smith PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 1573b2a8c54SBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 158d382aafbSBarry Smith 159287e6e24SBarry Smith Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 160287e6e24SBarry Smith if you run ./configure with the option 161287e6e24SBarry Smith --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 162287e6e24SBarry Smith for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can 163287e6e24SBarry Smith purchase a 64 bit integer version of the MKL and use that with a PetscBLASInt of long int. 164287e6e24SBarry Smith 165287e6e24SBarry Smith External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 166287e6e24SBarry Smith be used with PETSc if you have set PetscBLASInt to long int. 167287e6e24SBarry Smith 168d382aafbSBarry Smith .seealso: PetscMPIInt, PetscInt 169d382aafbSBarry Smith 170d382aafbSBarry Smith M*/ 171d382aafbSBarry Smith typedef int PetscBLASInt; 172d382aafbSBarry Smith 173d382aafbSBarry Smith /*MC 174d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 175d382aafbSBarry Smith 176d382aafbSBarry Smith Level: intermediate 177d382aafbSBarry Smith 178d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1793b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 180d382aafbSBarry Smith 1813b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 182d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 183d382aafbSBarry Smith 1843b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 185d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 186d382aafbSBarry Smith 187d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 188d382aafbSBarry Smith 189d382aafbSBarry Smith M*/ 190d382aafbSBarry Smith typedef int PetscMPIInt; 191d382aafbSBarry Smith 192d382aafbSBarry Smith /*MC 193d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 194d382aafbSBarry Smith 195d382aafbSBarry Smith Level: intermediate 196d382aafbSBarry Smith 197d382aafbSBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 198d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 199d382aafbSBarry Smith 200d382aafbSBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 201d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 202d382aafbSBarry Smith 203d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 204d382aafbSBarry Smith M*/ 205d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 206d382aafbSBarry Smith 207d382aafbSBarry Smith /*MC 208d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2093b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 210d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 211d382aafbSBarry Smith 212d382aafbSBarry Smith Level: intermediate 213d382aafbSBarry Smith 214d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 215d382aafbSBarry Smith M*/ 216*236ed0a3SSatish Balay #if defined(PETSC_HAVE___INT64) 217*236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 218*236ed0a3SSatish Balay #else 219*236ed0a3SSatish Balay typedef long long Petsc64bitInt; 220*236ed0a3SSatish Balay #endif 221d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 222*236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 223d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 224d382aafbSBarry Smith #else 225d382aafbSBarry Smith typedef int PetscInt; 226d382aafbSBarry Smith #define MPIU_INT MPI_INT 227d382aafbSBarry Smith #endif 228*236ed0a3SSatish Balay 229d382aafbSBarry Smith 23058b60935SBarry Smith /*EC 23158b60935SBarry Smith 23258b60935SBarry Smith PetscPrecision - indicates what precision the object is using 23358b60935SBarry Smith 23458b60935SBarry Smith Level: advanced 23558b60935SBarry Smith 23658b60935SBarry Smith .seealso: PetscObjectSetPrecision() 23758b60935SBarry Smith E*/ 23858b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 23958b60935SBarry Smith extern const char *PetscPrecisions[]; 24058b60935SBarry Smith 24158b60935SBarry Smith 242503cfb0cSBarry Smith /* 243503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 244503cfb0cSBarry Smith */ 245d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 246d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 247d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 248d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 249d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 250d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 251d382aafbSBarry Smith #else 252d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 253d382aafbSBarry Smith #endif 254d382aafbSBarry Smith 255d382aafbSBarry Smith 256d382aafbSBarry Smith /* 257d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 258d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 259d382aafbSBarry Smith */ 260d382aafbSBarry Smith 261d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 262d382aafbSBarry Smith 263d382aafbSBarry Smith /* 264d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 265d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 266d382aafbSBarry Smith */ 267d382aafbSBarry Smith extern FILE* PETSC_STDERR; 268d382aafbSBarry Smith 269d382aafbSBarry Smith /* 270d382aafbSBarry Smith PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 271d382aafbSBarry Smith in conjunction with PETSC_STDOUT, or by itself. 272d382aafbSBarry Smith */ 273d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD; 274d382aafbSBarry Smith 275d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 276d382aafbSBarry Smith /*MC 277d382aafbSBarry Smith PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 278d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 279d382aafbSBarry Smith 280d382aafbSBarry Smith Synopsis: 281d382aafbSBarry Smith PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 282d382aafbSBarry Smith 283eca87e8dSBarry Smith Not collective 284eca87e8dSBarry Smith 285d382aafbSBarry Smith Level: developer 286d382aafbSBarry Smith 287d382aafbSBarry Smith Example: 288d382aafbSBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 289d382aafbSBarry Smith PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 290d382aafbSBarry Smith 291d382aafbSBarry Smith .seealso: PetscPolymorphicFunction() 292d382aafbSBarry Smith 293d382aafbSBarry Smith M*/ 294d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 295d382aafbSBarry Smith 296d382aafbSBarry Smith /*MC 297d382aafbSBarry Smith PetscPolymorphicScalar - allows defining a C++ polymorphic version of 298d382aafbSBarry Smith a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 299d382aafbSBarry Smith 300d382aafbSBarry Smith Synopsis: 301d382aafbSBarry Smith PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 302d382aafbSBarry Smith 303eca87e8dSBarry Smith Not collective 304eca87e8dSBarry Smith 305d382aafbSBarry Smith Level: developer 306d382aafbSBarry Smith 307d382aafbSBarry Smith Example: 308d382aafbSBarry Smith PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 309d382aafbSBarry Smith PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 310d382aafbSBarry Smith 311d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 312d382aafbSBarry Smith 313d382aafbSBarry Smith M*/ 314d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 315d382aafbSBarry Smith 316d382aafbSBarry Smith /*MC 317d382aafbSBarry Smith PetscPolymorphicFunction - allows defining a C++ polymorphic version of 318d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 319d382aafbSBarry Smith and returns the computed value (istead of an error code) 320d382aafbSBarry Smith 321d382aafbSBarry Smith Synopsis: 322d382aafbSBarry Smith PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 323d382aafbSBarry Smith 324eca87e8dSBarry Smith Not collective 325eca87e8dSBarry Smith 326d382aafbSBarry Smith Level: developer 327d382aafbSBarry Smith 328d382aafbSBarry Smith Example: 329d382aafbSBarry Smith PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 330d382aafbSBarry Smith PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 331d382aafbSBarry Smith 332d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine() 333d382aafbSBarry Smith 334d382aafbSBarry Smith M*/ 335d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 336d382aafbSBarry Smith 337d382aafbSBarry Smith #else 338d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) 339d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) 340d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) 341d382aafbSBarry Smith #endif 342d382aafbSBarry Smith 343d382aafbSBarry Smith /*MC 344d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 345d382aafbSBarry Smith 346d382aafbSBarry Smith Synopsis: 347ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 348d382aafbSBarry Smith 349eca87e8dSBarry Smith Not Collective 350eca87e8dSBarry Smith 351d382aafbSBarry Smith Input Parameters: 352d382aafbSBarry Smith . cond - condition or expression 353d382aafbSBarry Smith 354d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 355d382aafbSBarry Smith branch is unlikely. 356d382aafbSBarry Smith 357d382aafbSBarry Smith Level: advanced 358d382aafbSBarry Smith 359d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 360d382aafbSBarry Smith M*/ 361d382aafbSBarry Smith 362d382aafbSBarry Smith /*MC 363d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 364d382aafbSBarry Smith 365d382aafbSBarry Smith Synopsis: 366ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 367d382aafbSBarry Smith 368eca87e8dSBarry Smith Not Collective 369eca87e8dSBarry Smith 370d382aafbSBarry Smith Input Parameters: 371d382aafbSBarry Smith . cond - condition or expression 372d382aafbSBarry Smith 373d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 374d382aafbSBarry Smith branch is likely. 375d382aafbSBarry Smith 376d382aafbSBarry Smith Level: advanced 377d382aafbSBarry Smith 378d382aafbSBarry Smith .seealso: PetscUnlikely() 379d382aafbSBarry Smith M*/ 380d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 381d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 382d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 383d382aafbSBarry Smith #else 384cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 385cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 386d382aafbSBarry Smith #endif 387d382aafbSBarry Smith 388d382aafbSBarry Smith /* 389d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 390d382aafbSBarry Smith */ 391d382aafbSBarry Smith #include "petscmath.h" 392d382aafbSBarry Smith 393d382aafbSBarry Smith /* 394d382aafbSBarry Smith Declare extern C stuff after including external header files 395d382aafbSBarry Smith */ 396d382aafbSBarry Smith 397d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 398d382aafbSBarry Smith 399d382aafbSBarry Smith /* 400d382aafbSBarry Smith Basic PETSc constants 401d382aafbSBarry Smith */ 402d382aafbSBarry Smith 403d382aafbSBarry Smith /*E 404ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 405d382aafbSBarry Smith 406d382aafbSBarry Smith Level: beginner 407d382aafbSBarry Smith 408ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 40934e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41034e82e7dSBarry Smith 411d382aafbSBarry Smith E*/ 412ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 413ace3abfcSBarry Smith extern const char *PetscBools[]; 41470b3c8c7SBarry Smith 41570b3c8c7SBarry Smith /*E 41670b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 41770b3c8c7SBarry Smith 41870b3c8c7SBarry Smith Level: beginner 41970b3c8c7SBarry Smith 42070b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42170b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 42270b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 42370b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 42470b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 42570b3c8c7SBarry Smith 42670b3c8c7SBarry Smith E*/ 42770b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 42870b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 429d382aafbSBarry Smith 430d382aafbSBarry Smith /*MC 431ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 432d382aafbSBarry Smith 433d382aafbSBarry Smith Level: beginner 434d382aafbSBarry Smith 435d382aafbSBarry Smith Note: Zero integer 436d382aafbSBarry Smith 437ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 438d382aafbSBarry Smith M*/ 439d382aafbSBarry Smith 440d382aafbSBarry Smith /*MC 441ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 442d382aafbSBarry Smith 443d382aafbSBarry Smith Level: beginner 444d382aafbSBarry Smith 445d382aafbSBarry Smith Note: Nonzero integer 446d382aafbSBarry Smith 447ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 448d382aafbSBarry Smith M*/ 449d382aafbSBarry Smith 450d382aafbSBarry Smith /*MC 451d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 452d382aafbSBarry Smith 453d382aafbSBarry Smith Level: beginner 454d382aafbSBarry Smith 455d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 456d382aafbSBarry Smith some default 457d382aafbSBarry Smith 458d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 459503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 460d382aafbSBarry Smith 46134e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 46234e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 46334e82e7dSBarry Smith 464d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 465d382aafbSBarry Smith 466d382aafbSBarry Smith M*/ 467d382aafbSBarry Smith #define PETSC_NULL 0 468d382aafbSBarry Smith 469d382aafbSBarry Smith /*MC 470d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 471d382aafbSBarry Smith 472d382aafbSBarry Smith Level: beginner 473d382aafbSBarry Smith 474d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 475d382aafbSBarry Smith some default 476d382aafbSBarry Smith 477d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 478d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 479d382aafbSBarry Smith 480d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 481d382aafbSBarry Smith 482d382aafbSBarry Smith M*/ 483d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 484d382aafbSBarry Smith 485d382aafbSBarry Smith /*MC 486557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 487557d4da8SBarry Smith where you wish PETSc to use the default. 488557d4da8SBarry Smith 489557d4da8SBarry Smith Level: beginner 490557d4da8SBarry Smith 491557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 492557d4da8SBarry Smith 493557d4da8SBarry Smith M*/ 494557d4da8SBarry Smith #define PETSC_DECIDE -1 495557d4da8SBarry Smith 496557d4da8SBarry Smith /*MC 497d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 498d382aafbSBarry Smith where you wish PETSc to compute the required value. 499d382aafbSBarry Smith 500d382aafbSBarry Smith Level: beginner 501d382aafbSBarry Smith 502557d4da8SBarry Smith 503557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 504557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 505557d4da8SBarry Smith 506d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 507d382aafbSBarry Smith 508d382aafbSBarry Smith M*/ 509d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 510d382aafbSBarry Smith 511d382aafbSBarry Smith /*MC 512557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 513557d4da8SBarry Smith where you wish PETSc to use the default. 514557d4da8SBarry Smith 515557d4da8SBarry Smith Level: beginner 516557d4da8SBarry Smith 517557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 518557d4da8SBarry Smith 519557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 520557d4da8SBarry Smith 521557d4da8SBarry Smith M*/ 522557d4da8SBarry Smith #define PETSC_DEFAULT -2 523557d4da8SBarry Smith 524557d4da8SBarry Smith /*MC 525d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 526d382aafbSBarry Smith all the processs that PETSc knows about. 527d382aafbSBarry Smith 528d382aafbSBarry Smith Level: beginner 529d382aafbSBarry Smith 530d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 531d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 532d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 533d382aafbSBarry Smith PetscInitialize() 534d382aafbSBarry Smith 535d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 536d382aafbSBarry Smith 537d382aafbSBarry Smith M*/ 538d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 539d382aafbSBarry Smith 540d382aafbSBarry Smith /*MC 541503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 542d382aafbSBarry Smith 543d382aafbSBarry Smith Level: beginner 544d382aafbSBarry Smith 545d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 546d382aafbSBarry Smith 547d382aafbSBarry Smith M*/ 548d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 549d382aafbSBarry Smith 5507087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 5517087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 552d382aafbSBarry Smith 5537087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 5547087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 5557087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 556d382aafbSBarry Smith 557d382aafbSBarry Smith /*MC 558d382aafbSBarry Smith PetscMalloc - Allocates memory 559d382aafbSBarry Smith 560eca87e8dSBarry Smith Synopsis: 561eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 562eca87e8dSBarry Smith 563eca87e8dSBarry Smith Not Collective 564eca87e8dSBarry Smith 565d382aafbSBarry Smith Input Parameter: 566d382aafbSBarry Smith . m - number of bytes to allocate 567d382aafbSBarry Smith 568d382aafbSBarry Smith Output Parameter: 569d382aafbSBarry Smith . result - memory allocated 570d382aafbSBarry Smith 571d382aafbSBarry Smith Level: beginner 572d382aafbSBarry Smith 573d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 574d382aafbSBarry Smith 575d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 576d382aafbSBarry Smith properly handle not freeing the null pointer. 577d382aafbSBarry Smith 578d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 579d382aafbSBarry Smith 580d382aafbSBarry Smith Concepts: memory allocation 581d382aafbSBarry Smith 582d382aafbSBarry Smith M*/ 5832714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 584d382aafbSBarry Smith 585d382aafbSBarry Smith /*MC 586503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 587d382aafbSBarry Smith 588d382aafbSBarry Smith Synopsis: 589d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 590d382aafbSBarry Smith 591eca87e8dSBarry Smith Not Collective 592eca87e8dSBarry Smith 593eca87e8dSBarry Smith Input Parameters: 594eca87e8dSBarry Smith . addr - address to align (any pointer type) 595eca87e8dSBarry Smith 596d382aafbSBarry Smith Level: developer 597d382aafbSBarry Smith 598d382aafbSBarry Smith .seealso: PetscMallocAlign() 599d382aafbSBarry Smith 600d382aafbSBarry Smith Concepts: memory allocation 601d382aafbSBarry Smith M*/ 602d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 603d382aafbSBarry Smith 604d382aafbSBarry Smith /*MC 605503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 606d382aafbSBarry Smith 607eca87e8dSBarry Smith Synopsis: 608eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 609eca87e8dSBarry Smith 610eca87e8dSBarry Smith Not Collective 611eca87e8dSBarry Smith 612d382aafbSBarry Smith Input Parameter: 613d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 614d382aafbSBarry Smith . t1 - type of first memory elements 615d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 616d382aafbSBarry Smith - t2 - type of second memory elements 617d382aafbSBarry Smith 618d382aafbSBarry Smith Output Parameter: 619d382aafbSBarry Smith + r1 - memory allocated in first chunk 620d382aafbSBarry Smith - r2 - memory allocated in second chunk 621d382aafbSBarry Smith 622d382aafbSBarry Smith Level: developer 623d382aafbSBarry Smith 624d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 625d382aafbSBarry Smith 626d382aafbSBarry Smith Concepts: memory allocation 627d382aafbSBarry Smith 628d382aafbSBarry Smith M*/ 629d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 630d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 631d382aafbSBarry Smith #else 6323b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 633d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 634d382aafbSBarry Smith #endif 635d382aafbSBarry Smith 636d382aafbSBarry Smith /*MC 637503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 638d382aafbSBarry Smith 639eca87e8dSBarry Smith Synopsis: 640eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 641eca87e8dSBarry Smith 642eca87e8dSBarry Smith Not Collective 643eca87e8dSBarry Smith 644d382aafbSBarry Smith Input Parameter: 645d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 646d382aafbSBarry Smith . t1 - type of first memory elements 647d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 648d382aafbSBarry Smith . t2 - type of second memory elements 649d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 650d382aafbSBarry Smith - t3 - type of third memory elements 651d382aafbSBarry Smith 652d382aafbSBarry Smith Output Parameter: 653d382aafbSBarry Smith + r1 - memory allocated in first chunk 654d382aafbSBarry Smith . r2 - memory allocated in second chunk 655d382aafbSBarry Smith - r3 - memory allocated in third chunk 656d382aafbSBarry Smith 657d382aafbSBarry Smith Level: developer 658d382aafbSBarry Smith 659d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 660d382aafbSBarry Smith 661d382aafbSBarry Smith Concepts: memory allocation 662d382aafbSBarry Smith 663d382aafbSBarry Smith M*/ 664d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 665d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 666d382aafbSBarry Smith #else 6673b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 668d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 669d382aafbSBarry Smith #endif 670d382aafbSBarry Smith 671d382aafbSBarry Smith /*MC 672503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 673d382aafbSBarry Smith 674eca87e8dSBarry Smith Synopsis: 675eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 676eca87e8dSBarry Smith 677eca87e8dSBarry Smith Not Collective 678eca87e8dSBarry Smith 679d382aafbSBarry Smith Input Parameter: 680d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 681d382aafbSBarry Smith . t1 - type of first memory elements 682d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 683d382aafbSBarry Smith . t2 - type of second memory elements 684d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 685d382aafbSBarry Smith . t3 - type of third memory elements 686d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 687d382aafbSBarry Smith - t4 - type of fourth memory elements 688d382aafbSBarry Smith 689d382aafbSBarry Smith Output Parameter: 690d382aafbSBarry Smith + r1 - memory allocated in first chunk 691d382aafbSBarry Smith . r2 - memory allocated in second chunk 692d382aafbSBarry Smith . r3 - memory allocated in third chunk 693d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 694d382aafbSBarry Smith 695d382aafbSBarry Smith Level: developer 696d382aafbSBarry Smith 697d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 698d382aafbSBarry Smith 699d382aafbSBarry Smith Concepts: memory allocation 700d382aafbSBarry Smith 701d382aafbSBarry Smith M*/ 702d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 703d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 704d382aafbSBarry Smith #else 705d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 7063b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 707d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 708d382aafbSBarry Smith #endif 709d382aafbSBarry Smith 710d382aafbSBarry Smith /*MC 711503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 712d382aafbSBarry Smith 713eca87e8dSBarry Smith Synopsis: 714eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 715eca87e8dSBarry Smith 716eca87e8dSBarry Smith Not Collective 717eca87e8dSBarry Smith 718d382aafbSBarry Smith Input Parameter: 719d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 720d382aafbSBarry Smith . t1 - type of first memory elements 721d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 722d382aafbSBarry Smith . t2 - type of second memory elements 723d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 724d382aafbSBarry Smith . t3 - type of third memory elements 725d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 726d382aafbSBarry Smith . t4 - type of fourth memory elements 727d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 728d382aafbSBarry Smith - t5 - type of fifth memory elements 729d382aafbSBarry Smith 730d382aafbSBarry Smith Output Parameter: 731d382aafbSBarry Smith + r1 - memory allocated in first chunk 732d382aafbSBarry Smith . r2 - memory allocated in second chunk 733d382aafbSBarry Smith . r3 - memory allocated in third chunk 734d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 735d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 736d382aafbSBarry Smith 737d382aafbSBarry Smith Level: developer 738d382aafbSBarry Smith 739d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 740d382aafbSBarry Smith 741d382aafbSBarry Smith Concepts: memory allocation 742d382aafbSBarry Smith 743d382aafbSBarry Smith M*/ 744d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 745d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 746d382aafbSBarry Smith #else 747d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 7483b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 749d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 750d382aafbSBarry Smith #endif 751d382aafbSBarry Smith 752d382aafbSBarry Smith 753d382aafbSBarry Smith /*MC 754503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 755d382aafbSBarry Smith 756eca87e8dSBarry Smith Synopsis: 757eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 758eca87e8dSBarry Smith 759eca87e8dSBarry Smith Not Collective 760eca87e8dSBarry Smith 761d382aafbSBarry Smith Input Parameter: 762d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 763d382aafbSBarry Smith . t1 - type of first memory elements 764d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 765d382aafbSBarry Smith . t2 - type of second memory elements 766d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 767d382aafbSBarry Smith . t3 - type of third memory elements 768d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 769d382aafbSBarry Smith . t4 - type of fourth memory elements 770d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 771d382aafbSBarry Smith . t5 - type of fifth memory elements 772d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 773d382aafbSBarry Smith - t6 - type of sixth memory elements 774d382aafbSBarry Smith 775d382aafbSBarry Smith Output Parameter: 776d382aafbSBarry Smith + r1 - memory allocated in first chunk 777d382aafbSBarry Smith . r2 - memory allocated in second chunk 778d382aafbSBarry Smith . r3 - memory allocated in third chunk 779d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 780d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 781d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 782d382aafbSBarry Smith 783d382aafbSBarry Smith Level: developer 784d382aafbSBarry Smith 785d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 786d382aafbSBarry Smith 787d382aafbSBarry Smith Concepts: memory allocation 788d382aafbSBarry Smith 789d382aafbSBarry Smith M*/ 790d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 791d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 792d382aafbSBarry Smith #else 793d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7943b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 795d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 796d382aafbSBarry Smith #endif 797d382aafbSBarry Smith 798d382aafbSBarry Smith /*MC 799503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 800d382aafbSBarry Smith 801eca87e8dSBarry Smith Synopsis: 802eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 803eca87e8dSBarry Smith 804eca87e8dSBarry Smith Not Collective 805eca87e8dSBarry Smith 806d382aafbSBarry Smith Input Parameter: 807d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 808d382aafbSBarry Smith . t1 - type of first memory elements 809d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 810d382aafbSBarry Smith . t2 - type of second memory elements 811d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 812d382aafbSBarry Smith . t3 - type of third memory elements 813d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 814d382aafbSBarry Smith . t4 - type of fourth memory elements 815d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 816d382aafbSBarry Smith . t5 - type of fifth memory elements 817d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 818d382aafbSBarry Smith . t6 - type of sixth memory elements 819d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 820d382aafbSBarry Smith - t7 - type of sixth memory elements 821d382aafbSBarry Smith 822d382aafbSBarry Smith Output Parameter: 823d382aafbSBarry Smith + r1 - memory allocated in first chunk 824d382aafbSBarry Smith . r2 - memory allocated in second chunk 825d382aafbSBarry Smith . r3 - memory allocated in third chunk 826d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 827d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 828d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 829eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 830d382aafbSBarry Smith 831d382aafbSBarry Smith Level: developer 832d382aafbSBarry Smith 833d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 834d382aafbSBarry Smith 835d382aafbSBarry Smith Concepts: memory allocation 836d382aafbSBarry Smith 837d382aafbSBarry Smith M*/ 838d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 839d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 840d382aafbSBarry Smith #else 841d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 8423b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 843d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 844d382aafbSBarry Smith #endif 845d382aafbSBarry Smith 846d382aafbSBarry Smith /*MC 847503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 848d382aafbSBarry Smith 849eca87e8dSBarry Smith Synopsis: 850eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 851eca87e8dSBarry Smith 852eca87e8dSBarry Smith Not Collective 853eca87e8dSBarry Smith 854d382aafbSBarry Smith Input Parameter: 855d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 856d382aafbSBarry Smith 857d382aafbSBarry Smith Output Parameter: 858d382aafbSBarry Smith . result - memory allocated 859d382aafbSBarry Smith 860d382aafbSBarry Smith Level: beginner 861d382aafbSBarry Smith 862ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 863d382aafbSBarry Smith 864d382aafbSBarry Smith Concepts: memory allocation 865d382aafbSBarry Smith 866d382aafbSBarry Smith M*/ 867d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 868ad0619ddSBarry Smith 869ad0619ddSBarry Smith /*MC 870ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 871ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 872ad0619ddSBarry Smith 873ad0619ddSBarry Smith Synopsis: 874ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 875ad0619ddSBarry Smith 876ad0619ddSBarry Smith Not Collective 877ad0619ddSBarry Smith 878ad0619ddSBarry Smith Input Parameter: 879ad0619ddSBarry Smith + obj - object memory is logged to 880ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 881ad0619ddSBarry Smith 882ad0619ddSBarry Smith Output Parameter: 883ad0619ddSBarry Smith . result - memory allocated 884ad0619ddSBarry Smith 885ad0619ddSBarry Smith Level: developer 886ad0619ddSBarry Smith 887ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 888ad0619ddSBarry Smith 889ad0619ddSBarry Smith Concepts: memory allocation 890ad0619ddSBarry Smith 891ad0619ddSBarry Smith M*/ 892d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 893d382aafbSBarry Smith 894d382aafbSBarry Smith /*MC 895d382aafbSBarry Smith PetscFree - Frees memory 896d382aafbSBarry Smith 897eca87e8dSBarry Smith Synopsis: 898eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 899eca87e8dSBarry Smith 900eca87e8dSBarry Smith Not Collective 901eca87e8dSBarry Smith 902d382aafbSBarry Smith Input Parameter: 903d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 904d382aafbSBarry Smith 905d382aafbSBarry Smith Level: beginner 906d382aafbSBarry Smith 907d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 908d382aafbSBarry Smith 909d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 910d382aafbSBarry Smith 911d382aafbSBarry Smith Concepts: memory allocation 912d382aafbSBarry Smith 913d382aafbSBarry Smith M*/ 91412537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 915d382aafbSBarry Smith 916d382aafbSBarry Smith /*MC 917d382aafbSBarry Smith PetscFreeVoid - Frees memory 918d382aafbSBarry Smith 919d382aafbSBarry Smith Synopsis: 920d382aafbSBarry Smith void PetscFreeVoid(void *memory) 921d382aafbSBarry Smith 922eca87e8dSBarry Smith Not Collective 923eca87e8dSBarry Smith 924eca87e8dSBarry Smith Input Parameter: 925eca87e8dSBarry Smith . memory - memory to free 926eca87e8dSBarry Smith 927d382aafbSBarry Smith Level: beginner 928d382aafbSBarry Smith 929d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 930d382aafbSBarry Smith 931d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 932d382aafbSBarry Smith 933d382aafbSBarry Smith Concepts: memory allocation 934d382aafbSBarry Smith 935d382aafbSBarry Smith M*/ 9362714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 937d382aafbSBarry Smith 938d382aafbSBarry Smith 939d382aafbSBarry Smith /*MC 940d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 941d382aafbSBarry Smith 942eca87e8dSBarry Smith Synopsis: 943eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 944eca87e8dSBarry Smith 945eca87e8dSBarry Smith Not Collective 946eca87e8dSBarry Smith 947d382aafbSBarry Smith Input Parameter: 948d382aafbSBarry Smith + memory1 - memory to free 949d382aafbSBarry Smith - memory2 - 2nd memory to free 950d382aafbSBarry Smith 951d382aafbSBarry Smith Level: developer 952d382aafbSBarry Smith 953d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 954d382aafbSBarry Smith 955d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 956d382aafbSBarry Smith 957d382aafbSBarry Smith Concepts: memory allocation 958d382aafbSBarry Smith 959d382aafbSBarry Smith M*/ 960d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 961d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 962d382aafbSBarry Smith #else 96381dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 964d382aafbSBarry Smith #endif 965d382aafbSBarry Smith 966d382aafbSBarry Smith /*MC 967d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 968d382aafbSBarry Smith 969eca87e8dSBarry Smith Synopsis: 970eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 971eca87e8dSBarry Smith 972eca87e8dSBarry Smith Not Collective 973eca87e8dSBarry Smith 974d382aafbSBarry Smith Input Parameter: 975d382aafbSBarry Smith + memory1 - memory to free 976d382aafbSBarry Smith . memory2 - 2nd memory to free 977d382aafbSBarry Smith - memory3 - 3rd memory to free 978d382aafbSBarry Smith 979d382aafbSBarry Smith Level: developer 980d382aafbSBarry Smith 981d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 982d382aafbSBarry Smith 983d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 984d382aafbSBarry Smith 985d382aafbSBarry Smith Concepts: memory allocation 986d382aafbSBarry Smith 987d382aafbSBarry Smith M*/ 988d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 989d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 990d382aafbSBarry Smith #else 99181dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 992d382aafbSBarry Smith #endif 993d382aafbSBarry Smith 994d382aafbSBarry Smith /*MC 995d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 996d382aafbSBarry Smith 997eca87e8dSBarry Smith Synopsis: 998eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 999eca87e8dSBarry Smith 1000eca87e8dSBarry Smith Not Collective 1001eca87e8dSBarry Smith 1002d382aafbSBarry Smith Input Parameter: 1003d382aafbSBarry Smith + m1 - memory to free 1004d382aafbSBarry Smith . m2 - 2nd memory to free 1005d382aafbSBarry Smith . m3 - 3rd memory to free 1006d382aafbSBarry Smith - m4 - 4th memory to free 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith Level: developer 1009d382aafbSBarry Smith 1010d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1013d382aafbSBarry Smith 1014d382aafbSBarry Smith Concepts: memory allocation 1015d382aafbSBarry Smith 1016d382aafbSBarry Smith M*/ 1017d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1018d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1019d382aafbSBarry Smith #else 102081dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1021d382aafbSBarry Smith #endif 1022d382aafbSBarry Smith 1023d382aafbSBarry Smith /*MC 1024d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1025d382aafbSBarry Smith 1026eca87e8dSBarry Smith Synopsis: 1027eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1028eca87e8dSBarry Smith 1029eca87e8dSBarry Smith Not Collective 1030eca87e8dSBarry Smith 1031d382aafbSBarry Smith Input Parameter: 1032d382aafbSBarry Smith + m1 - memory to free 1033d382aafbSBarry Smith . m2 - 2nd memory to free 1034d382aafbSBarry Smith . m3 - 3rd memory to free 1035d382aafbSBarry Smith . m4 - 4th memory to free 1036d382aafbSBarry Smith - m5 - 5th memory to free 1037d382aafbSBarry Smith 1038d382aafbSBarry Smith Level: developer 1039d382aafbSBarry Smith 1040d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1043d382aafbSBarry Smith 1044d382aafbSBarry Smith Concepts: memory allocation 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith M*/ 1047d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1048d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1049d382aafbSBarry Smith #else 105081dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1051d382aafbSBarry Smith #endif 1052d382aafbSBarry Smith 1053d382aafbSBarry Smith 1054d382aafbSBarry Smith /*MC 1055d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1056d382aafbSBarry Smith 1057eca87e8dSBarry Smith Synopsis: 1058eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1059eca87e8dSBarry Smith 1060eca87e8dSBarry Smith Not Collective 1061eca87e8dSBarry Smith 1062d382aafbSBarry Smith Input Parameter: 1063d382aafbSBarry Smith + m1 - memory to free 1064d382aafbSBarry Smith . m2 - 2nd memory to free 1065d382aafbSBarry Smith . m3 - 3rd memory to free 1066d382aafbSBarry Smith . m4 - 4th memory to free 1067d382aafbSBarry Smith . m5 - 5th memory to free 1068d382aafbSBarry Smith - m6 - 6th memory to free 1069d382aafbSBarry Smith 1070d382aafbSBarry Smith 1071d382aafbSBarry Smith Level: developer 1072d382aafbSBarry Smith 1073d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1074d382aafbSBarry Smith 1075d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1076d382aafbSBarry Smith 1077d382aafbSBarry Smith Concepts: memory allocation 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith M*/ 1080d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1081d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1082d382aafbSBarry Smith #else 108381dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1084d382aafbSBarry Smith #endif 1085d382aafbSBarry Smith 1086d382aafbSBarry Smith /*MC 1087d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1088d382aafbSBarry Smith 1089eca87e8dSBarry Smith Synopsis: 1090eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1091eca87e8dSBarry Smith 1092eca87e8dSBarry Smith Not Collective 1093eca87e8dSBarry Smith 1094d382aafbSBarry Smith Input Parameter: 1095d382aafbSBarry Smith + m1 - memory to free 1096d382aafbSBarry Smith . m2 - 2nd memory to free 1097d382aafbSBarry Smith . m3 - 3rd memory to free 1098d382aafbSBarry Smith . m4 - 4th memory to free 1099d382aafbSBarry Smith . m5 - 5th memory to free 1100d382aafbSBarry Smith . m6 - 6th memory to free 1101d382aafbSBarry Smith - m7 - 7th memory to free 1102d382aafbSBarry Smith 1103d382aafbSBarry Smith 1104d382aafbSBarry Smith Level: developer 1105d382aafbSBarry Smith 1106d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1107d382aafbSBarry Smith 1108d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1109d382aafbSBarry Smith PetscMalloc7() 1110d382aafbSBarry Smith 1111d382aafbSBarry Smith Concepts: memory allocation 1112d382aafbSBarry Smith 1113d382aafbSBarry Smith M*/ 1114d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1115d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1116d382aafbSBarry Smith #else 111781dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1118d382aafbSBarry Smith #endif 1119d382aafbSBarry Smith 11207087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 11217087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 11227087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 11237087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith /* 112666d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1127d382aafbSBarry Smith */ 11287087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 11297087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 11307087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 11317087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 11327087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 11337087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 11347087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 1135d382aafbSBarry Smith 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith /*E 1138d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1139d382aafbSBarry Smith 1140d382aafbSBarry Smith Level: beginner 1141d382aafbSBarry Smith 1142d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1143d382aafbSBarry Smith 1144d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1145d382aafbSBarry Smith PetscDataTypeGetSize() 1146d382aafbSBarry Smith 1147d382aafbSBarry Smith E*/ 1148d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1149557d4da8SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC_LONG_DOUBLE = 10} PetscDataType; 1150d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1151d382aafbSBarry Smith 1152d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1153d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1154d382aafbSBarry Smith #else 1155ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1156d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 1157d382aafbSBarry Smith #else 1158d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1159d382aafbSBarry Smith #endif 1160d382aafbSBarry Smith #endif 1161ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1162d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 1163d382aafbSBarry Smith #else 1164d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1165d382aafbSBarry Smith #endif 1166d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1167d382aafbSBarry Smith 11687087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11697087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11707087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1171d382aafbSBarry Smith 1172d382aafbSBarry Smith /* 1173d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1174d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1175d382aafbSBarry Smith functionality and/or error checking. 1176d382aafbSBarry Smith */ 11777087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11787087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11797087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11807087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11817087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11827087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11837087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11847087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11857087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 11867087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 11877087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 11887087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 11897087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 11907087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 11917087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 11927087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 11937087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 11947087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 11957087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 119674722a09SBarry Smith extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11977ba3a57cSBarry Smith extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 11987087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 11997087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith /*S 1202d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith Level: intermediate 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1207d382aafbSBarry Smith S*/ 1208d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1209d382aafbSBarry Smith 12107087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 12117087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 12128c74ee41SBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken*); 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith /* 1215d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1216d382aafbSBarry Smith */ 12177087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 1218ce63c4c1SBarry Smith #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 12197087cfbeSBarry Smith extern MPI_Op MPIU_SUM; 1220d382aafbSBarry Smith #else 1221d382aafbSBarry Smith #define MPIU_SUM MPI_SUM 1222d382aafbSBarry Smith #endif 1223ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 1224d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1225d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1226d9822059SBarry Smith #else 1227d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1228d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1229d9822059SBarry Smith #endif 12307087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1231d382aafbSBarry Smith 1232eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1233eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1234eb3f98d2SBarry Smith 1235d382aafbSBarry Smith /*S 1236d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith Level: beginner 1239d382aafbSBarry Smith 1240d382aafbSBarry Smith Note: This is the base class from which all objects appear. 1241d382aafbSBarry Smith 12421890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1243d382aafbSBarry Smith S*/ 1244d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1245d382aafbSBarry Smith 1246d382aafbSBarry Smith /*S 1247d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1248d382aafbSBarry Smith by string name 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith Level: advanced 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy() 1253d382aafbSBarry Smith S*/ 1254d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith /*E 1257d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1258d382aafbSBarry Smith 1259d382aafbSBarry Smith Level: beginner 1260d382aafbSBarry Smith 1261d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1264d382aafbSBarry Smith 1265d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1266d382aafbSBarry Smith 1267d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1268d382aafbSBarry Smith 1269d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1270d382aafbSBarry Smith 1271d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1272d382aafbSBarry Smith E*/ 1273d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1274d382aafbSBarry Smith 1275d382aafbSBarry Smith #include "petscviewer.h" 1276d382aafbSBarry Smith #include "petscoptions.h" 1277d382aafbSBarry Smith 12780700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 12797087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 12807087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 12817087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith /* 1284d382aafbSBarry Smith Routines that get memory usage information from the OS 1285d382aafbSBarry Smith */ 12867087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 12877087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 12887087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 12897087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1290d382aafbSBarry Smith 12917087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 12927087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 12937087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 12947087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith /* 1297d382aafbSBarry Smith Initialization of PETSc 1298d382aafbSBarry Smith */ 12997087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1300d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 13017087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 13027087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 13037087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 13047087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 130509573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 13067087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 13077087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 13087087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1309d382aafbSBarry Smith 13107087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 13117087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1312d382aafbSBarry Smith 1313d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 131485afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 131585afcc9aSBarry Smith extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 131685afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFinalize(void); 131785afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 131885afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 131985afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 132085afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1321d382aafbSBarry Smith 13227087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 13237087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 13247087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 13255180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1326d382aafbSBarry Smith 1327d382aafbSBarry Smith /* 1328d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 1329d382aafbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be 1330d382aafbSBarry Smith C++. 1331d382aafbSBarry Smith */ 1332d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1333d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1334d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1335d382aafbSBarry Smith 1336d382aafbSBarry Smith /* 1337d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1338d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1339503cfb0cSBarry Smith 1340503cfb0cSBarry Smith Level: developer 1341503cfb0cSBarry Smith 1342503cfb0cSBarry Smith .seealso: PetscUseMethod() 1343d382aafbSBarry Smith */ 1344d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1345d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1346d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1347d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1348d382aafbSBarry Smith } 1349503cfb0cSBarry Smith 1350503cfb0cSBarry Smith /* 1351503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1352503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1353503cfb0cSBarry Smith 1354503cfb0cSBarry Smith Level: developer 1355503cfb0cSBarry Smith 1356503cfb0cSBarry Smith .seealso: PetscTryMethod() 1357503cfb0cSBarry Smith */ 1358d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1359d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1360d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1361d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1362703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1363d382aafbSBarry Smith } 1364503cfb0cSBarry Smith 1365d382aafbSBarry Smith /* 1366d382aafbSBarry Smith Functions that can act on any PETSc object. 1367d382aafbSBarry Smith */ 1368fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13697087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13707087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1371609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13727087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13737087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13747087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13757087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 13767087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 13777087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 13787087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 13797087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 13807087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 13817087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 13827087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 13837087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 13847087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 13857087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 13867087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 13876ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 13887087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 13897087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 13907087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 13917087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 13927087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 13937087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 13947087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 13957087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1396d382aafbSBarry Smith 1397d382aafbSBarry Smith /*MC 1398d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1399d382aafbSBarry Smith 1400eca87e8dSBarry Smith Synopsis: 1401eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1402eca87e8dSBarry Smith 1403ad4df100SBarry Smith Logically Collective on PetscObject 1404d382aafbSBarry Smith 1405d382aafbSBarry Smith Input Parameters: 1406d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1407d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1408d382aafbSBarry Smith . name - name associated with the child function 1409d382aafbSBarry Smith . fname - name of the function 1410d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1411d382aafbSBarry Smith 1412d382aafbSBarry Smith Level: advanced 1413d382aafbSBarry Smith 1414d382aafbSBarry Smith 1415d382aafbSBarry Smith Notes: 1416d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1417d382aafbSBarry Smith 1418d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1419d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1420d382aafbSBarry Smith 1421d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 142220de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1423d382aafbSBarry Smith enabled. 1424d382aafbSBarry Smith 1425d382aafbSBarry Smith Concepts: objects^composing functions 1426d382aafbSBarry Smith Concepts: composing functions 1427d382aafbSBarry Smith Concepts: functions^querying 1428d382aafbSBarry Smith Concepts: objects^querying 1429d382aafbSBarry Smith Concepts: querying objects 1430d382aafbSBarry Smith 1431d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1432d382aafbSBarry Smith M*/ 1433d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1434d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1435d382aafbSBarry Smith #else 1436d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1437d382aafbSBarry Smith #endif 1438d382aafbSBarry Smith 14397087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 14407087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 14417087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 14427087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 14437087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 14447087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 14457087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 14467087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 14477087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 14487087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 14497087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 14507087cfbeSBarry Smith extern PetscErrorCode PetscTypeCompare(PetscObject,const char[],PetscBool *); 14512b12f010SJed Brown extern PetscErrorCode PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14527087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14537087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1454d382aafbSBarry Smith 1455d382aafbSBarry Smith /* 1456d382aafbSBarry Smith Defines PETSc error handling. 1457d382aafbSBarry Smith */ 1458d382aafbSBarry Smith #include "petscerror.h" 1459d382aafbSBarry Smith 1460d382aafbSBarry Smith /*S 1461503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1462d382aafbSBarry Smith 14631d0fab5eSBarry Smith Level: developer 1464d382aafbSBarry Smith 14651d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14661d0fab5eSBarry Smith 14671d0fab5eSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1468d382aafbSBarry Smith S*/ 1469d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1470d382aafbSBarry Smith 1471fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14727087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1473bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14747087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14756ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 14767087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1477d382aafbSBarry Smith 1478d382aafbSBarry Smith /* 1479503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1480d382aafbSBarry Smith link libraries that will be loaded as needed. 1481d382aafbSBarry Smith */ 14827087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 14837087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 14844b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 14857087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1486d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1487d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1488d382aafbSBarry Smith #else 1489d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1490d382aafbSBarry Smith #endif 14917087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 14927087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 14937087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 14947087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1495d382aafbSBarry Smith 1496d382aafbSBarry Smith /*S 1497d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1498d382aafbSBarry Smith 1499d382aafbSBarry Smith Level: advanced 1500d382aafbSBarry Smith 150120de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1502d382aafbSBarry Smith 1503d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1504d382aafbSBarry Smith S*/ 1505d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 15067087cfbeSBarry Smith extern PetscDLLibrary DLLibrariesLoaded; 15077087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 15087087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 15097087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 15107087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 15117087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 15127087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 15137087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 15147087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1515d382aafbSBarry Smith 1516d382aafbSBarry Smith /* 151705846914SDmitry Karpeev PetscFwk support. Needs to be documented. 151805846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 151905846914SDmitry Karpeev */ 152005846914SDmitry Karpeev #include "petscfwk.h" 152105846914SDmitry Karpeev 152205846914SDmitry Karpeev /* 1523d382aafbSBarry Smith Useful utility routines 1524d382aafbSBarry Smith */ 15257087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 15267087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 15277087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1528d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1529d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 15307087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1531d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1532d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 15337087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 15347087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1535d382aafbSBarry Smith 1536503cfb0cSBarry Smith /* 1537ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1538503cfb0cSBarry Smith 1539503cfb0cSBarry Smith Notes: This is useful in cases like 1540503cfb0cSBarry Smith $ int *a; 1541ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1542ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1543503cfb0cSBarry Smith */ 1544d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1545503cfb0cSBarry Smith 1546d382aafbSBarry Smith /* 1547d382aafbSBarry Smith Defines basic graphics available from PETSc. 1548d382aafbSBarry Smith */ 1549d382aafbSBarry Smith #include "petscdraw.h" 1550d382aafbSBarry Smith 1551d382aafbSBarry Smith /* 1552d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1553d382aafbSBarry Smith */ 1554d382aafbSBarry Smith #include "private/petscimpl.h" 1555503cfb0cSBarry Smith 1556238ccf28SShri Abhyankar 1557d382aafbSBarry Smith /*MC 1558d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1559d382aafbSBarry Smith 1560d382aafbSBarry Smith Synopsis: 1561d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1562d382aafbSBarry Smith 1563eca87e8dSBarry Smith Not Collective 1564eca87e8dSBarry Smith 1565d382aafbSBarry Smith Input Parameters: 1566d382aafbSBarry Smith . format - the usual printf() format string 1567d382aafbSBarry Smith 1568d382aafbSBarry Smith Options Database Keys: 1569d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1570d382aafbSBarry Smith (default) stderr 1571d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1572d382aafbSBarry Smith error is handled.) 1573d382aafbSBarry Smith 1574d382aafbSBarry Smith Notes: Use 1575d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1576d382aafbSBarry Smith $ error is handled.) and 1577d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1578c9a19010SBarry Smith $ of you can use your own function 1579d382aafbSBarry Smith 1580d382aafbSBarry Smith Use 1581d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1582d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1583d382aafbSBarry Smith 1584d382aafbSBarry Smith Use 1585d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1586d382aafbSBarry Smith 1587d382aafbSBarry Smith Level: developer 1588d382aafbSBarry Smith 1589d382aafbSBarry Smith Fortran Note: 1590d382aafbSBarry Smith This routine is not supported in Fortran. 1591d382aafbSBarry Smith 1592d382aafbSBarry Smith Concepts: error messages^printing 1593d382aafbSBarry Smith Concepts: printing^error messages 1594d382aafbSBarry Smith 1595c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1596d382aafbSBarry Smith M*/ 15977087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1598d382aafbSBarry Smith 1599d382aafbSBarry Smith /*MC 1600d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1601d382aafbSBarry Smith 1602d382aafbSBarry Smith Synopsis: 1603d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1604d382aafbSBarry Smith 1605eca87e8dSBarry Smith Not Collective 1606eca87e8dSBarry Smith 1607d382aafbSBarry Smith Input Parameters: 1608d382aafbSBarry Smith . format - the usual printf() format string 1609d382aafbSBarry Smith 1610d382aafbSBarry Smith Level: developer 1611d382aafbSBarry Smith 1612d382aafbSBarry Smith Fortran Note: 1613d382aafbSBarry Smith This routine is not supported in Fortran. 1614d382aafbSBarry Smith 1615d382aafbSBarry Smith Concepts: help messages^printing 1616d382aafbSBarry Smith Concepts: printing^help messages 1617d382aafbSBarry Smith 1618d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1619d382aafbSBarry Smith M*/ 16207087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1621d382aafbSBarry Smith 1622fcfd50ebSBarry Smith /* 1623fcfd50ebSBarry Smith Defines PETSc profiling. 1624fcfd50ebSBarry Smith */ 1625fcfd50ebSBarry Smith #include "petsclog.h" 1626fcfd50ebSBarry Smith 1627fcfd50ebSBarry Smith /* 1628fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1629fcfd50ebSBarry Smith */ 1630fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1631fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1632fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1633fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1634fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1635fcfd50ebSBarry Smith #else 1636fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1637fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1638fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1639fcfd50ebSBarry Smith #endif 1640fcfd50ebSBarry Smith 1641fcfd50ebSBarry Smith /* 1642fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1643fcfd50ebSBarry Smith */ 1644fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1645fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1646fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1647fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1648fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1649fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1650257d2499SJed Brown extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1651fcfd50ebSBarry Smith 1652fcfd50ebSBarry Smith 1653fcfd50ebSBarry Smith 1654fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1655fcfd50ebSBarry Smith #include <stdarg.h> 1656fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1657fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1658fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 16598c74ee41SBarry Smith extern PetscErrorCode PetscVFPrintfRegress(FILE*,const char *,va_list); 16608c74ee41SBarry Smith extern PetscErrorCode PetscVFPrintfRegressSetUp(MPI_Comm,const char *); 1661fcfd50ebSBarry Smith 1662fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1663fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1664fcfd50ebSBarry Smith #endif 1665fcfd50ebSBarry Smith 166609573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 166709573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 166809573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1669d382aafbSBarry Smith 1670d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16717087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16727087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1673d382aafbSBarry Smith #endif 1674d382aafbSBarry Smith 16757087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 16767087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 16777087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 16787087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 16797087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 16807087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 16817087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1682d382aafbSBarry Smith 16837087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1684d382aafbSBarry Smith 1685d382aafbSBarry Smith /*S 1686d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1687d382aafbSBarry Smith 1688d382aafbSBarry Smith Level: advanced 1689d382aafbSBarry Smith 1690d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1691d382aafbSBarry Smith S*/ 16927087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1693d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 16947087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 16957087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1696fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 16977087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 16987087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1699d382aafbSBarry Smith 1700d382aafbSBarry Smith /* 1701d382aafbSBarry Smith For use in debuggers 1702d382aafbSBarry Smith */ 17037087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 17047087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 17057087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 17067087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 17077087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1708d382aafbSBarry Smith 1709d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1710d382aafbSBarry Smith #include <memory.h> 1711d382aafbSBarry Smith #endif 1712d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1713d382aafbSBarry Smith #include <stdlib.h> 1714d382aafbSBarry Smith #endif 1715d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1716d382aafbSBarry Smith #include <strings.h> 1717d382aafbSBarry Smith #endif 1718d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1719d382aafbSBarry Smith #include <string.h> 1720d382aafbSBarry Smith #endif 17216c7e564aSBarry Smith 17226c7e564aSBarry Smith 1723d382aafbSBarry Smith #if defined(PETSC_HAVE_XMMINTRIN_H) 1724d382aafbSBarry Smith #include <xmmintrin.h> 1725d382aafbSBarry Smith #endif 1726d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1727d382aafbSBarry Smith #include <stdint.h> 1728d382aafbSBarry Smith #endif 1729d382aafbSBarry Smith 1730fcfd50ebSBarry Smith #undef __FUNCT__ 1731fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1732d382aafbSBarry Smith /*@C 1733d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1734d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1735d382aafbSBarry Smith PetscMemmove() in that case. 1736d382aafbSBarry Smith 1737d382aafbSBarry Smith Not Collective 1738d382aafbSBarry Smith 1739d382aafbSBarry Smith Input Parameters: 1740d382aafbSBarry Smith + b - pointer to initial memory space 1741d382aafbSBarry Smith - n - length (in bytes) of space to copy 1742d382aafbSBarry Smith 1743d382aafbSBarry Smith Output Parameter: 1744d382aafbSBarry Smith . a - pointer to copy space 1745d382aafbSBarry Smith 1746d382aafbSBarry Smith Level: intermediate 1747d382aafbSBarry Smith 1748d382aafbSBarry Smith Compile Option: 1749d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1750d382aafbSBarry Smith for memory copies on double precision values. 1751d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1752d382aafbSBarry Smith for memory copies on double precision values. 1753d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1754d382aafbSBarry Smith for memory copies on double precision values. 1755d382aafbSBarry Smith 1756d382aafbSBarry Smith Note: 1757d382aafbSBarry Smith This routine is analogous to memcpy(). 1758d382aafbSBarry Smith 1759503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1760503cfb0cSBarry Smith 1761d382aafbSBarry Smith Concepts: memory^copying 1762d382aafbSBarry Smith Concepts: copying^memory 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith .seealso: PetscMemmove() 1765d382aafbSBarry Smith 1766d382aafbSBarry Smith @*/ 17677087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1768d382aafbSBarry Smith { 1769d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1770d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1771d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1772a7e36092SMatthew G Knepley PetscFunctionBegin; 1773e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1774e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1775a7e36092SMatthew G Knepley #else 1776d382aafbSBarry Smith PetscFunctionBegin; 1777a7e36092SMatthew G Knepley #endif 1778d382aafbSBarry Smith if (a != b) { 1779d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1780d382aafbSBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) { 1781e32f2f54SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1782d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1783d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1784d382aafbSBarry Smith } 1785d382aafbSBarry Smith #endif 1786d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1787d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1788d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1789d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1790d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1791d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1792d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1793d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1794d382aafbSBarry Smith #else 1795d382aafbSBarry Smith size_t i; 1796d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1797d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1798d382aafbSBarry Smith #endif 1799d382aafbSBarry Smith } else { 1800d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1801d382aafbSBarry Smith } 1802d382aafbSBarry Smith #else 1803d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1804d382aafbSBarry Smith #endif 1805d382aafbSBarry Smith } 1806d382aafbSBarry Smith PetscFunctionReturn(0); 1807d382aafbSBarry Smith } 1808d382aafbSBarry Smith 1809d382aafbSBarry Smith /*@C 1810d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith Not Collective 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith Input Parameters: 1815d382aafbSBarry Smith + a - pointer to beginning memory location 1816d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1817d382aafbSBarry Smith 1818d382aafbSBarry Smith Level: intermediate 1819d382aafbSBarry Smith 1820d382aafbSBarry Smith Compile Option: 1821d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1822d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1823d382aafbSBarry Smith 1824503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1825503cfb0cSBarry Smith 1826d382aafbSBarry Smith Concepts: memory^zeroing 1827d382aafbSBarry Smith Concepts: zeroing^memory 1828d382aafbSBarry Smith 1829d382aafbSBarry Smith .seealso: PetscMemcpy() 1830d382aafbSBarry Smith @*/ 18317087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1832d382aafbSBarry Smith { 1833d382aafbSBarry Smith if (n > 0) { 1834d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1835e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1836d382aafbSBarry Smith #endif 1837d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1838d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1839d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1840d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1841d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1842d382aafbSBarry Smith } else { 1843d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1844d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1845d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1846d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1847d382aafbSBarry Smith } else { 1848d382aafbSBarry Smith #endif 1849d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1850d382aafbSBarry Smith bzero((char *)a,n); 1851d382aafbSBarry Smith #else 1852d382aafbSBarry Smith memset((char*)a,0,n); 1853d382aafbSBarry Smith #endif 1854d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1855d382aafbSBarry Smith } 1856d382aafbSBarry Smith #endif 1857d382aafbSBarry Smith } 1858d382aafbSBarry Smith return 0; 1859d382aafbSBarry Smith } 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith /*MC 1862d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1863d382aafbSBarry Smith 1864eca87e8dSBarry Smith Synopsis: 1865eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1866eca87e8dSBarry Smith 1867d382aafbSBarry Smith Not Collective 1868d382aafbSBarry Smith 1869d382aafbSBarry Smith Input Parameters: 1870d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1871d382aafbSBarry Smith . n - number of elements to fetch 1872d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 187350d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith Level: developer 1876d382aafbSBarry Smith 1877d382aafbSBarry Smith Notes: 1878d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1879d382aafbSBarry Smith 188050d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 188150d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 188250d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 188363cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 188463cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 188563cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1886d382aafbSBarry Smith 1887d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1888d382aafbSBarry Smith address). 1889d382aafbSBarry Smith 1890d382aafbSBarry Smith Concepts: memory 1891d382aafbSBarry Smith M*/ 1892d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1893d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1894d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1895d382aafbSBarry Smith } while (0) 1896d382aafbSBarry Smith 1897d382aafbSBarry Smith /* 1898e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1899d382aafbSBarry Smith */ 1900d382aafbSBarry Smith #include "petscmatlab.h" 1901d382aafbSBarry Smith 1902d382aafbSBarry Smith /* 1903d382aafbSBarry Smith Determine if some of the kernel computation routines use 1904d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1905d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1906d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1907e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1908d382aafbSBarry Smith */ 1909d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1912d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1913d382aafbSBarry Smith #endif 1914d382aafbSBarry Smith 19155a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 19165a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1917d382aafbSBarry Smith #endif 1918d382aafbSBarry Smith 1919d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1920d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1921d382aafbSBarry Smith #endif 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1924d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1925d382aafbSBarry Smith #endif 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1928d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1929d382aafbSBarry Smith #endif 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1932d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1933d382aafbSBarry Smith #endif 1934d382aafbSBarry Smith 1935d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1936d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1937d382aafbSBarry Smith #endif 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1940d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1944d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1948d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith 1951d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1952d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1953d382aafbSBarry Smith #endif 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1956d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1957d382aafbSBarry Smith #endif 1958d382aafbSBarry Smith 1959d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1960d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1964d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1965d382aafbSBarry Smith #endif 1966d382aafbSBarry Smith 1967d382aafbSBarry Smith #endif 1968d382aafbSBarry Smith 1969d382aafbSBarry Smith /* 1970d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1971d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1972d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1973d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1974d382aafbSBarry Smith ugly extern "C" {} wrappers. 1975d382aafbSBarry Smith */ 1976d382aafbSBarry Smith #if defined(__cplusplus) 1977d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1978d382aafbSBarry Smith #define EXTERN_C_END } 1979d382aafbSBarry Smith #else 1980d382aafbSBarry Smith #define EXTERN_C_BEGIN 1981d382aafbSBarry Smith #define EXTERN_C_END 1982d382aafbSBarry Smith #endif 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith /*MC 1987d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1988d382aafbSBarry Smith communication 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith Level: beginner 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1993d382aafbSBarry Smith 1994d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1995d382aafbSBarry Smith M*/ 1996d382aafbSBarry Smith 1997d382aafbSBarry Smith /*MC 1998d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1999d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2000d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2001d382aafbSBarry Smith 2002d382aafbSBarry Smith 2003d382aafbSBarry Smith Level: beginner 2004d382aafbSBarry Smith 2005d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2006d382aafbSBarry Smith M*/ 2007d382aafbSBarry Smith 2008d382aafbSBarry Smith /*MC 2009d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2010d382aafbSBarry Smith 2011d382aafbSBarry Smith Level: beginner 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2014d382aafbSBarry Smith M*/ 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith /*MC 2017d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2018d382aafbSBarry Smith Level: beginner 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2021d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2022d382aafbSBarry Smith 2023d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2024d382aafbSBarry Smith M*/ 2025d382aafbSBarry Smith 2026d382aafbSBarry Smith /*MC 2027d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2028d382aafbSBarry Smith 2029d382aafbSBarry Smith Level: beginner 2030d382aafbSBarry Smith 2031d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2032d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2033d382aafbSBarry Smith 2034d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2035d382aafbSBarry Smith M*/ 2036d382aafbSBarry Smith 2037d382aafbSBarry Smith /*MC 2038d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith Level: beginner 2041d382aafbSBarry Smith 2042d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2043d382aafbSBarry Smith pass this value 2044d382aafbSBarry Smith 2045d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2046d382aafbSBarry Smith M*/ 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2049d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2050d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2051d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2052d382aafbSBarry Smith #else 2053d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2054d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2055d382aafbSBarry Smith #endif 2056d382aafbSBarry Smith #endif 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2061d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2062d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2063d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2064d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2065d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2066d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2067d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2068d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2071e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2072e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2073eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2074eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2077e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2078eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2079d382aafbSBarry Smith #else 2080d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2081d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2082d382aafbSBarry Smith #endif 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith #else 2085d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2086d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2087d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2088d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2089d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2090d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith /* 2095d382aafbSBarry Smith The IBM include files define hz, here we hide it so that it may be used 2096d382aafbSBarry Smith as a regular user variable. 2097d382aafbSBarry Smith */ 2098d382aafbSBarry Smith #if defined(hz) 2099d382aafbSBarry Smith #undef hz 2100d382aafbSBarry Smith #endif 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2103d382aafbSBarry Smith 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2106d382aafbSBarry Smith #include <limits.h> 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2109d382aafbSBarry Smith #include <sys/param.h> 2110d382aafbSBarry Smith #endif 2111d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2112d382aafbSBarry Smith #include <sys/types.h> 2113d382aafbSBarry Smith #endif 2114d382aafbSBarry Smith #if defined(MAXPATHLEN) 2115d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2116d382aafbSBarry Smith #elif defined(MAX_PATH) 2117d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2118d382aafbSBarry Smith #elif defined(_MAX_PATH) 2119d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2120d382aafbSBarry Smith #else 2121d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2122d382aafbSBarry Smith #endif 2123d382aafbSBarry Smith 2124d382aafbSBarry Smith /* Special support for C++ */ 2125d382aafbSBarry Smith #include "petscsys.hh" 21266c7e564aSBarry Smith 2127d382aafbSBarry Smith 2128d382aafbSBarry Smith /*MC 2129d382aafbSBarry Smith 2130d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2131d382aafbSBarry Smith 2132d382aafbSBarry Smith $ 1) classic Fortran 77 style 2133d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2134d382aafbSBarry Smith $ XXX variablename 2135d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2136d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2137d382aafbSBarry Smith $ 2138d382aafbSBarry Smith $ 2) classic Fortran 90 style 2139d1716517SSatish Balay $#include "finclude/petscXXX.h" 2140d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2141d382aafbSBarry Smith $ XXX variablename 2142d382aafbSBarry Smith $ 2143d382aafbSBarry Smith $ 3) Using Fortran modules 2144d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2145d382aafbSBarry Smith $ use petscXXXX 2146d382aafbSBarry Smith $ XXX variablename 2147d382aafbSBarry Smith $ 2148d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2149d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2150d382aafbSBarry Smith $ use petscXXXX 2151d382aafbSBarry Smith $ type(XXX) variablename 2152e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2153d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2158d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2159d382aafbSBarry Smith $ integer variablename 2160d382aafbSBarry Smith $ 2161d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2162d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2165d382aafbSBarry Smith for only a few PETSc functions. 2166d382aafbSBarry Smith 2167d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2168d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2169d382aafbSBarry Smith you cannot have something like 2170d382aafbSBarry Smith $ PetscInt row,col 2171d382aafbSBarry Smith $ PetscScalar val 2172d382aafbSBarry Smith $ ... 2173d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2174d382aafbSBarry Smith You must instead have 2175d382aafbSBarry Smith $ PetscInt row(1),col(1) 2176d382aafbSBarry Smith $ PetscScalar val(1) 2177d382aafbSBarry Smith $ ... 2178d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2179d382aafbSBarry Smith 2180d382aafbSBarry Smith 2181d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2184d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2185d382aafbSBarry Smith 2186d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2187d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2188d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2189d382aafbSBarry Smith 2190d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2191e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2192d382aafbSBarry Smith 2193d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2194d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2195d382aafbSBarry Smith 2196d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2197d382aafbSBarry Smith automatically by "make allfortranstubs". 2198d382aafbSBarry Smith 2199e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2200d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2201d382aafbSBarry Smith include their predecessors 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith Level: beginner 2204d382aafbSBarry Smith 2205d382aafbSBarry Smith M*/ 2206d382aafbSBarry Smith 22077087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 22087087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 22097087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 22107087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 22117087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 22127087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2213d382aafbSBarry Smith 22147087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 22157087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 22167087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 22177087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 22187087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2219d7aa01a8SHong Zhang extern PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 22207087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 22217087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 22227087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 22237087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 22247087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 22257087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 22267087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 22279b67c4b3SDmitry Karpeev extern PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2228d382aafbSBarry Smith 22297087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 22307087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2231d382aafbSBarry Smith 223276bdecfbSBarry Smith /*J 2233d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2234d382aafbSBarry Smith with an optional dynamic library name, for example 2235d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2236d382aafbSBarry Smith 2237d382aafbSBarry Smith Level: beginner 2238d382aafbSBarry Smith 2239e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2240d382aafbSBarry Smith with the option --download-sprng 2241d382aafbSBarry Smith 2242d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 224376bdecfbSBarry Smith J*/ 2244d382aafbSBarry Smith #define PetscRandomType char* 2245d382aafbSBarry Smith #define PETSCRAND "rand" 2246d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2247d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2248d382aafbSBarry Smith 2249d382aafbSBarry Smith /* Logging support */ 22507087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2251d382aafbSBarry Smith 22527087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2253d382aafbSBarry Smith 2254d382aafbSBarry Smith /*S 2255d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2256d382aafbSBarry Smith 2257d382aafbSBarry Smith Level: intermediate 2258d382aafbSBarry Smith 2259d382aafbSBarry Smith Concepts: random numbers 2260d382aafbSBarry Smith 2261d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2262d382aafbSBarry Smith S*/ 2263d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2264d382aafbSBarry Smith 2265d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2266d382aafbSBarry Smith extern PetscFList PetscRandomList; 2267ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2268d382aafbSBarry Smith 22697087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 22707087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22717087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 22727087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 22737087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 22747087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 22757087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 22767087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2277d382aafbSBarry Smith 2278d382aafbSBarry Smith /*MC 2279d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2280d382aafbSBarry Smith 2281d382aafbSBarry Smith Synopsis: 22821890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2283d382aafbSBarry Smith 2284d382aafbSBarry Smith Not Collective 2285d382aafbSBarry Smith 2286d382aafbSBarry Smith Input Parameters: 2287d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2288d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2289d382aafbSBarry Smith . func_name - The name of routine to create method context 2290d382aafbSBarry Smith - create_func - The creation routine itself 2291d382aafbSBarry Smith 2292d382aafbSBarry Smith Notes: 2293d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2294d382aafbSBarry Smith 2295d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2296d382aafbSBarry Smith 2297d382aafbSBarry Smith Sample usage: 2298d382aafbSBarry Smith .vb 2299d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2300d382aafbSBarry Smith .ve 2301d382aafbSBarry Smith 2302d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2303d382aafbSBarry Smith .vb 2304d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2305d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2306d382aafbSBarry Smith .ve 2307d382aafbSBarry Smith or at runtime via the option 2308d382aafbSBarry Smith .vb 2309d382aafbSBarry Smith -random_type my_random_name 2310d382aafbSBarry Smith .ve 2311d382aafbSBarry Smith 2312d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2313d382aafbSBarry Smith 2314d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2315d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2316d382aafbSBarry Smith 2317d382aafbSBarry Smith Level: advanced 2318d382aafbSBarry Smith 2319d382aafbSBarry Smith .keywords: PetscRandom, register 2320d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2321d382aafbSBarry Smith M*/ 2322d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2323d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2324d382aafbSBarry Smith #else 2325d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2326d382aafbSBarry Smith #endif 2327d382aafbSBarry Smith 23287087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 23297087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 23307087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 23317087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 23327087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 23337087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 23347087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 23357087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2336fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2337d382aafbSBarry Smith 23387087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 23397087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 23407087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 23417087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 23427087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 23437087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 23447087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2345d382aafbSBarry Smith 23467087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 23477087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 23487087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 23497087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 23507087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 23517087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 23527087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 23537087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23547087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23557087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23567087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23577087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23587087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2359d382aafbSBarry Smith 2360d382aafbSBarry Smith /* 2361d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2362d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2363d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2364d382aafbSBarry Smith PetscBinarySeek(). 2365d382aafbSBarry Smith */ 2366d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2367d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2368d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2369d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2370d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2371d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2372d382aafbSBarry Smith 2373d382aafbSBarry Smith /*E 2374d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2375d382aafbSBarry Smith 2376d382aafbSBarry Smith Level: advanced 2377d382aafbSBarry Smith 2378d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2379d382aafbSBarry Smith E*/ 2380d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 23817087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 23827087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 238346090da6SBarry Smith extern PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2384d382aafbSBarry Smith 23857087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 23867087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 23877087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 23887087cfbeSBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(char*); 23897087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 23907087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2391d382aafbSBarry Smith 23927087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 23937087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 23947087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 23957087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 23967087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2397d382aafbSBarry Smith 23987087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2399d382aafbSBarry Smith 2400d382aafbSBarry Smith /*E 2401d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2402d382aafbSBarry Smith 2403d382aafbSBarry Smith Level: beginner 2404d382aafbSBarry Smith 2405d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2406d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2407d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2408d382aafbSBarry Smith E*/ 240911f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2410d382aafbSBarry Smith 2411d382aafbSBarry Smith /*MC 2412d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2413d382aafbSBarry Smith 2414d382aafbSBarry Smith Level: beginner 2415d382aafbSBarry Smith 2416d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2417eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2418eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2419d382aafbSBarry Smith 2420d382aafbSBarry Smith M*/ 2421d382aafbSBarry Smith 2422d382aafbSBarry Smith /*MC 2423d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2424d382aafbSBarry Smith value into that location 2425d382aafbSBarry Smith 2426d382aafbSBarry Smith Level: beginner 2427d382aafbSBarry Smith 2428d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2429eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2430eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2431d382aafbSBarry Smith 2432d382aafbSBarry Smith M*/ 2433d382aafbSBarry Smith 2434d382aafbSBarry Smith /*MC 2435d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2436d382aafbSBarry Smith 2437d382aafbSBarry Smith Level: beginner 2438d382aafbSBarry Smith 2439d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2440d382aafbSBarry Smith 2441d382aafbSBarry Smith M*/ 2442d382aafbSBarry Smith 2443d382aafbSBarry Smith /*S 2444d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2445d382aafbSBarry Smith 2446d382aafbSBarry Smith Level: advanced 2447d382aafbSBarry Smith 2448d382aafbSBarry Smith Concepts: communicator, create 2449d382aafbSBarry Smith S*/ 2450d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2451d382aafbSBarry Smith 2452d382aafbSBarry Smith struct _n_PetscSubcomm { 2453d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2454d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2455d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2456d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2457d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2458d382aafbSBarry Smith }; 2459d382aafbSBarry Smith 2460638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2461638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2462638faf0bSHong Zhang 24637087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2464fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24657087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24667087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,const PetscSubcommType); 24677087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2468d382aafbSBarry Smith 246982a7e548SBarry Smith #include <petscctable.h> 247082a7e548SBarry Smith 2471d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24726c7e564aSBarry Smith 24739e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24749e03d832SJed Brown #undef __FUNCT__ 24759e03d832SJed Brown #define __FUNCT__ "User provided function" 24769e03d832SJed Brown 2477d382aafbSBarry Smith #endif 2478