1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ed938b00SJed Brown #if defined(__cplusplus) 44ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 45ed938b00SJed Brown #else 46ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 47ed938b00SJed Brown #endif 48ed938b00SJed Brown 49ed938b00SJed Brown #if defined(__cplusplus) 50ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 51ed938b00SJed Brown #else 52ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 53ed938b00SJed Brown #endif 54ed938b00SJed Brown 55ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 56014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 57014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 5821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 59014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 60014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 61014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 6221f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 63d382aafbSBarry Smith #else 64014dd563SJed Brown # define PETSC_DLLEXPORT 65014dd563SJed Brown # define PETSC_DLLIMPORT 6621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #endif 68014dd563SJed Brown 69014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 70014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 71014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 72014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 73014dd563SJed Brown #endif 74014dd563SJed Brown 752c280183SJed Brown #if defined(__cplusplus) 76014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 77638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 7821f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #else 80014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 81638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 826258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 83d382aafbSBarry Smith #endif 8427710113SBarry Smith 852c8e378dSBarry Smith #include <petscversion.h> 86301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 87d382aafbSBarry Smith 88d382aafbSBarry Smith /* ========================================================================== */ 89d382aafbSBarry Smith 90d382aafbSBarry Smith /* 91d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 92d382aafbSBarry Smith 93d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 94d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 95d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 96d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 97d382aafbSBarry Smith mpicxx.h directly in their code 98d382aafbSBarry Smith */ 99fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 100d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 101fa9e63e2SJed Brown #endif 102fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 103d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 104fa9e63e2SJed Brown #endif 1052c8e378dSBarry Smith #include <mpi.h> 10665013866SBarry Smith 107d382aafbSBarry Smith /* 1082981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 110d382aafbSBarry Smith */ 111d382aafbSBarry Smith #include <stdio.h> 112d382aafbSBarry Smith 113d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 114d382aafbSBarry Smith #if !defined(MPIAPI) 115d382aafbSBarry Smith #define MPIAPI 116d382aafbSBarry Smith #endif 117d382aafbSBarry Smith 118894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 119894dd566SJed Brown #if defined(__has_attribute) 120894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 121894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1228ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1238ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 124894dd566SJed Brown # endif 125894dd566SJed Brown #endif 126894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 127894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1288ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1298ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 130894dd566SJed Brown #endif 131b3506946SBarry Smith 132d382aafbSBarry Smith /*MC 133d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 134d382aafbSBarry Smith 135d382aafbSBarry Smith Level: beginner 136d382aafbSBarry Smith 137d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 138d382aafbSBarry Smith M*/ 139d382aafbSBarry Smith typedef int PetscErrorCode; 140d382aafbSBarry Smith 141d382aafbSBarry Smith /*MC 142d382aafbSBarry Smith 143503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 144d382aafbSBarry Smith (internal integer in the data structure used for error 1452981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1460700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 147d382aafbSBarry Smith 148d382aafbSBarry Smith Level: advanced 149d382aafbSBarry Smith 1500700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 151d382aafbSBarry Smith M*/ 1520700a824SBarry Smith typedef int PetscClassId; 153d382aafbSBarry Smith 154d382aafbSBarry Smith 155d382aafbSBarry Smith /*MC 156d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 157d382aafbSBarry Smith 158d382aafbSBarry Smith Level: intermediate 159d382aafbSBarry Smith 160d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1613b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 162d382aafbSBarry Smith 1634dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1642981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 165d382aafbSBarry Smith 166d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 167d382aafbSBarry Smith 168d382aafbSBarry Smith M*/ 169d382aafbSBarry Smith typedef int PetscMPIInt; 170d382aafbSBarry Smith 171d382aafbSBarry Smith /*MC 172d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 173d382aafbSBarry Smith 174d382aafbSBarry Smith Level: intermediate 175d382aafbSBarry Smith 176d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 177d382aafbSBarry Smith M*/ 178d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 1795a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 180d382aafbSBarry Smith 181fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 182fab38c73SJed Brown #include <stdint.h> 183fab38c73SJed Brown #endif 184fab38c73SJed Brown 185d382aafbSBarry Smith /*MC 186d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1873b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 188d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 189d382aafbSBarry Smith 190d382aafbSBarry Smith Level: intermediate 191d382aafbSBarry Smith 192d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 193d382aafbSBarry Smith M*/ 194fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 195fab38c73SJed Brown typedef int64_t Petsc64bitInt; 196fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 197f505b413SSatish Balay typedef long long Petsc64bitInt; 198f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 199236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 200236ed0a3SSatish Balay #else 201f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 202236ed0a3SSatish Balay #endif 203d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 204236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 20541860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 206fab38c73SJed Brown # define MPIU_INT MPI_INT64_T 207fab38c73SJed Brown # else 208d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 209fab38c73SJed Brown # endif 210d382aafbSBarry Smith #else 211d382aafbSBarry Smith typedef int PetscInt; 212d382aafbSBarry Smith #define MPIU_INT MPI_INT 213d382aafbSBarry Smith #endif 214236ed0a3SSatish Balay 215d382aafbSBarry Smith 216702bc34aSSatish Balay /*MC 217702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 218702bc34aSSatish Balay 219702bc34aSSatish Balay Level: intermediate 220702bc34aSSatish Balay 221702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 222702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 223702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 224702bc34aSSatish Balay 225c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2262981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 227702bc34aSSatish Balay 2282981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 229702bc34aSSatish Balay if you run ./configure with the option 230702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2312981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2322981ebdbSBarry Smith 2332981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2342981ebdbSBarry Smith 2352981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 236702bc34aSSatish Balay 237702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 238702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 239702bc34aSSatish Balay 240702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 241702bc34aSSatish Balay 242702bc34aSSatish Balay M*/ 243702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 244702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 245702bc34aSSatish Balay #else 246702bc34aSSatish Balay typedef int PetscBLASInt; 247702bc34aSSatish Balay #endif 248702bc34aSSatish Balay 24958b60935SBarry Smith /*EC 25058b60935SBarry Smith 2512981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 25258b60935SBarry Smith 25358b60935SBarry Smith Level: advanced 25458b60935SBarry Smith 25558b60935SBarry Smith .seealso: PetscObjectSetPrecision() 25658b60935SBarry Smith E*/ 25758b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 258014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 25958b60935SBarry Smith 260503cfb0cSBarry Smith /* 261503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 262503cfb0cSBarry Smith */ 263d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 264adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 265d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 266adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 267d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 268adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 269d382aafbSBarry Smith #else 270d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 271d382aafbSBarry Smith #endif 272d382aafbSBarry Smith 273d382aafbSBarry Smith 274d382aafbSBarry Smith /* 275d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 276d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 277d382aafbSBarry Smith */ 278014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 279d382aafbSBarry Smith 280d382aafbSBarry Smith /* 281d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 282d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 283d382aafbSBarry Smith */ 284014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 285d382aafbSBarry Smith 286d382aafbSBarry Smith /*MC 287d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 288d382aafbSBarry Smith 289d382aafbSBarry Smith Synopsis: 290f2ba6396SBarry Smith #include "petscsys.h" 291ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 292d382aafbSBarry Smith 293eca87e8dSBarry Smith Not Collective 294eca87e8dSBarry Smith 295d382aafbSBarry Smith Input Parameters: 296d382aafbSBarry Smith . cond - condition or expression 297d382aafbSBarry Smith 298d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 299d382aafbSBarry Smith branch is unlikely. 300d382aafbSBarry Smith 301d382aafbSBarry Smith Level: advanced 302d382aafbSBarry Smith 303d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 304d382aafbSBarry Smith M*/ 305d382aafbSBarry Smith 306d382aafbSBarry Smith /*MC 307d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 308d382aafbSBarry Smith 309d382aafbSBarry Smith Synopsis: 310f2ba6396SBarry Smith #include "petscsys.h" 311ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 312d382aafbSBarry Smith 313eca87e8dSBarry Smith Not Collective 314eca87e8dSBarry Smith 315d382aafbSBarry Smith Input Parameters: 316d382aafbSBarry Smith . cond - condition or expression 317d382aafbSBarry Smith 318d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 319d382aafbSBarry Smith branch is likely. 320d382aafbSBarry Smith 321d382aafbSBarry Smith Level: advanced 322d382aafbSBarry Smith 323d382aafbSBarry Smith .seealso: PetscUnlikely() 324d382aafbSBarry Smith M*/ 325d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 326d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 327d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 328d382aafbSBarry Smith #else 329cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 330cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 331d382aafbSBarry Smith #endif 332d382aafbSBarry Smith 333d382aafbSBarry Smith /* 334d382aafbSBarry Smith Declare extern C stuff after including external header files 335d382aafbSBarry Smith */ 336d382aafbSBarry Smith 337d382aafbSBarry Smith 338d382aafbSBarry Smith /* 339d382aafbSBarry Smith Basic PETSc constants 340d382aafbSBarry Smith */ 341d382aafbSBarry Smith 342d382aafbSBarry Smith /*E 343ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 344d382aafbSBarry Smith 345d382aafbSBarry Smith Level: beginner 346d382aafbSBarry Smith 347ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 34834e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 34934e82e7dSBarry Smith 350d382aafbSBarry Smith E*/ 351ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3526a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3535a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 35470b3c8c7SBarry Smith 3558b49ba18SBarry Smith /* 3568b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 3578b49ba18SBarry Smith */ 3588b49ba18SBarry Smith #include <petscmath.h> 3598b49ba18SBarry Smith 36070b3c8c7SBarry Smith /*E 36170b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 36270b3c8c7SBarry Smith 36370b3c8c7SBarry Smith Level: beginner 36470b3c8c7SBarry Smith 36570b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 36670b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 36770b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 36870b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 36970b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 37070b3c8c7SBarry Smith 37170b3c8c7SBarry Smith E*/ 37270b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3736a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 374d382aafbSBarry Smith 375d382aafbSBarry Smith /*MC 376ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 377d382aafbSBarry Smith 378d382aafbSBarry Smith Level: beginner 379d382aafbSBarry Smith 380d382aafbSBarry Smith Note: Zero integer 381d382aafbSBarry Smith 382ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 383d382aafbSBarry Smith M*/ 384d382aafbSBarry Smith 385d382aafbSBarry Smith /*MC 386ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 387d382aafbSBarry Smith 388d382aafbSBarry Smith Level: beginner 389d382aafbSBarry Smith 390d382aafbSBarry Smith Note: Nonzero integer 391d382aafbSBarry Smith 392ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 393d382aafbSBarry Smith M*/ 394d382aafbSBarry Smith 395d382aafbSBarry Smith /*MC 3960298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 397d382aafbSBarry Smith 398d382aafbSBarry Smith Level: beginner 399d382aafbSBarry Smith 400d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 401d382aafbSBarry Smith some default 402d382aafbSBarry Smith 403d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 404503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 405d382aafbSBarry Smith 406d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 407d382aafbSBarry Smith 408d382aafbSBarry Smith M*/ 4093bcbec90SJed Brown #define PETSC_NULL NULL 410d382aafbSBarry Smith 411d382aafbSBarry Smith /*MC 4120298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 413d382aafbSBarry Smith 414d382aafbSBarry Smith Level: beginner 415d382aafbSBarry Smith 416d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 417d382aafbSBarry Smith some default 418d382aafbSBarry Smith 419d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 420d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 421d382aafbSBarry Smith 422d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 423d382aafbSBarry Smith 424d382aafbSBarry Smith M*/ 4250298fd71SBarry Smith #define PETSC_IGNORE NULL 426d382aafbSBarry Smith 427d382aafbSBarry Smith /*MC 428557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 429557d4da8SBarry Smith where you wish PETSc to use the default. 430557d4da8SBarry Smith 431557d4da8SBarry Smith Level: beginner 432557d4da8SBarry Smith 433557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 434557d4da8SBarry Smith 435557d4da8SBarry Smith M*/ 436557d4da8SBarry Smith #define PETSC_DECIDE -1 437557d4da8SBarry Smith 438557d4da8SBarry Smith /*MC 439d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 440d382aafbSBarry Smith where you wish PETSc to compute the required value. 441d382aafbSBarry Smith 442d382aafbSBarry Smith Level: beginner 443d382aafbSBarry Smith 444557d4da8SBarry Smith 445557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 446557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 447557d4da8SBarry Smith 4480298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 449d382aafbSBarry Smith 450d382aafbSBarry Smith M*/ 451d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 452d382aafbSBarry Smith 453d382aafbSBarry Smith /*MC 454557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 455557d4da8SBarry Smith where you wish PETSc to use the default. 456557d4da8SBarry Smith 457557d4da8SBarry Smith Level: beginner 458557d4da8SBarry Smith 4592d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 460557d4da8SBarry Smith 4610298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 462557d4da8SBarry Smith 463557d4da8SBarry Smith M*/ 464557d4da8SBarry Smith #define PETSC_DEFAULT -2 465557d4da8SBarry Smith 466557d4da8SBarry Smith /*MC 467d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 468d382aafbSBarry Smith all the processs that PETSc knows about. 469d382aafbSBarry Smith 470d382aafbSBarry Smith Level: beginner 471d382aafbSBarry Smith 472d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 473d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 474d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 475d382aafbSBarry Smith PetscInitialize() 476d382aafbSBarry Smith 477d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 478d382aafbSBarry Smith 479d382aafbSBarry Smith M*/ 480014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 481d382aafbSBarry Smith 482d382aafbSBarry Smith /*MC 483503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 484d382aafbSBarry Smith 485d382aafbSBarry Smith Level: beginner 486d382aafbSBarry Smith 487d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 488d382aafbSBarry Smith 489d382aafbSBarry Smith M*/ 490d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 491d382aafbSBarry Smith 492d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 493014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 494014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 495014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 4964cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 497d382aafbSBarry Smith 498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 499014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 501d382aafbSBarry Smith 502d382aafbSBarry Smith /*MC 503d382aafbSBarry Smith PetscMalloc - Allocates memory 504d382aafbSBarry Smith 505eca87e8dSBarry Smith Synopsis: 506f2ba6396SBarry Smith #include "petscsys.h" 507eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 508eca87e8dSBarry Smith 509eca87e8dSBarry Smith Not Collective 510eca87e8dSBarry Smith 511d382aafbSBarry Smith Input Parameter: 512d382aafbSBarry Smith . m - number of bytes to allocate 513d382aafbSBarry Smith 514d382aafbSBarry Smith Output Parameter: 515d382aafbSBarry Smith . result - memory allocated 516d382aafbSBarry Smith 517d382aafbSBarry Smith Level: beginner 518d382aafbSBarry Smith 519d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 520d382aafbSBarry Smith 521d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 522d382aafbSBarry Smith properly handle not freeing the null pointer. 523d382aafbSBarry Smith 524d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 525d382aafbSBarry Smith 526d382aafbSBarry Smith Concepts: memory allocation 527d382aafbSBarry Smith 528d382aafbSBarry Smith M*/ 529efca3c55SSatish Balay #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b)) : (*(b) = 0,0) ) 530d382aafbSBarry Smith 531d382aafbSBarry Smith /*MC 532503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 533d382aafbSBarry Smith 534d382aafbSBarry Smith Synopsis: 535f2ba6396SBarry Smith #include "petscsys.h" 536d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 537d382aafbSBarry Smith 538eca87e8dSBarry Smith Not Collective 539eca87e8dSBarry Smith 540eca87e8dSBarry Smith Input Parameters: 541eca87e8dSBarry Smith . addr - address to align (any pointer type) 542eca87e8dSBarry Smith 543d382aafbSBarry Smith Level: developer 544d382aafbSBarry Smith 545d382aafbSBarry Smith .seealso: PetscMallocAlign() 546d382aafbSBarry Smith 547d382aafbSBarry Smith Concepts: memory allocation 548d382aafbSBarry Smith M*/ 549d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 550d382aafbSBarry Smith 551d382aafbSBarry Smith /*MC 552785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 553d382aafbSBarry Smith 554eca87e8dSBarry Smith Synopsis: 555f2ba6396SBarry Smith #include "petscsys.h" 556785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 557785e854fSJed Brown 558785e854fSJed Brown Not Collective 559785e854fSJed Brown 560785e854fSJed Brown Input Parameter: 561785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 562785e854fSJed Brown 563785e854fSJed Brown Output Parameter: 564785e854fSJed Brown . r1 - memory allocated in first chunk 565785e854fSJed Brown 566785e854fSJed Brown Level: developer 567785e854fSJed Brown 5681795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 569785e854fSJed Brown 570785e854fSJed Brown Concepts: memory allocation 571785e854fSJed Brown 572785e854fSJed Brown M*/ 573785e854fSJed Brown #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 574785e854fSJed Brown 575785e854fSJed Brown /*MC 5761795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 5771795a4d1SJed Brown 5781795a4d1SJed Brown Synopsis: 5791795a4d1SJed Brown #include "petscsys.h" 5801795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 5811795a4d1SJed Brown 5821795a4d1SJed Brown Not Collective 5831795a4d1SJed Brown 5841795a4d1SJed Brown Input Parameter: 5851795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 5861795a4d1SJed Brown 5871795a4d1SJed Brown Output Parameter: 5881795a4d1SJed Brown . r1 - memory allocated in first chunk 5891795a4d1SJed Brown 5901795a4d1SJed Brown Level: developer 5911795a4d1SJed Brown 5921795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 5931795a4d1SJed Brown 5941795a4d1SJed Brown Concepts: memory allocation 5951795a4d1SJed Brown 5961795a4d1SJed Brown M*/ 5971795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 5981795a4d1SJed Brown 5991795a4d1SJed Brown /*MC 600dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 601d382aafbSBarry Smith 602d382aafbSBarry Smith Synopsis: 603eca87e8dSBarry Smith #include "petscsys.h" 604dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 605eca87e8dSBarry Smith 606eca87e8dSBarry Smith Not Collective 607eca87e8dSBarry Smith 608d382aafbSBarry Smith Input Parameter: 609d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 610dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 611d382aafbSBarry Smith 612d382aafbSBarry Smith Output Parameter: 613d382aafbSBarry Smith + r1 - memory allocated in first chunk 614d382aafbSBarry Smith - r2 - memory allocated in second chunk 615d382aafbSBarry Smith 616d382aafbSBarry Smith Level: developer 617d382aafbSBarry Smith 6181795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 619d382aafbSBarry Smith 620d382aafbSBarry Smith Concepts: memory allocation 621d382aafbSBarry Smith 622d382aafbSBarry Smith M*/ 623d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 624dcca6d9dSJed Brown #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2)) 625d382aafbSBarry Smith #else 626*278791cbSMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 627*278791cbSMatthew G. Knepley || (!m1 ? (*(r1) = 0,0) : 0) || (!m2 ? (*(r2) = 0,0) : 0)) 628d382aafbSBarry Smith #endif 629d382aafbSBarry Smith 630d382aafbSBarry Smith /*MC 6311795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 632d382aafbSBarry Smith 633eca87e8dSBarry Smith Synopsis: 634f2ba6396SBarry Smith #include "petscsys.h" 6351795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 636eca87e8dSBarry Smith 637eca87e8dSBarry Smith Not Collective 638eca87e8dSBarry Smith 639d382aafbSBarry Smith Input Parameter: 640d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6411795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6421795a4d1SJed Brown 6431795a4d1SJed Brown Output Parameter: 6441795a4d1SJed Brown + r1 - memory allocated in first chunk 6451795a4d1SJed Brown - r2 - memory allocated in second chunk 6461795a4d1SJed Brown 6471795a4d1SJed Brown Level: developer 6481795a4d1SJed Brown 6491795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 6501795a4d1SJed Brown 6511795a4d1SJed Brown Concepts: memory allocation 6521795a4d1SJed Brown M*/ 6531795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 6541795a4d1SJed Brown 6551795a4d1SJed Brown /*MC 656dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 657d382aafbSBarry Smith 658d382aafbSBarry Smith Synopsis: 659d382aafbSBarry Smith #include "petscsys.h" 660dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 661d382aafbSBarry Smith 662d382aafbSBarry Smith Not Collective 663d382aafbSBarry Smith 664d382aafbSBarry Smith Input Parameter: 665d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 666d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 667dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 668d382aafbSBarry Smith 669d382aafbSBarry Smith Output Parameter: 670d382aafbSBarry Smith + r1 - memory allocated in first chunk 671d382aafbSBarry Smith . r2 - memory allocated in second chunk 672d382aafbSBarry Smith - r3 - memory allocated in third chunk 673d382aafbSBarry Smith 674d382aafbSBarry Smith Level: developer 675d382aafbSBarry Smith 6761795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 677d382aafbSBarry Smith 678d382aafbSBarry Smith Concepts: memory allocation 679d382aafbSBarry Smith 680d382aafbSBarry Smith M*/ 681d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 682dcca6d9dSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3)) 683d382aafbSBarry Smith #else 684dcca6d9dSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) \ 685*278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 686*278791cbSMatthew G. Knepley || (!m1 ? (*(r1) = 0,0) : 0) || (!m2 ? (*(r2) = 0,0) : 0) || (!m3 ? (*(r3) = 0,0) : 0)) 687d382aafbSBarry Smith #endif 688d382aafbSBarry Smith 689d382aafbSBarry Smith /*MC 6901795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 691d382aafbSBarry Smith 692eca87e8dSBarry Smith Synopsis: 693f2ba6396SBarry Smith #include "petscsys.h" 6941795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 695eca87e8dSBarry Smith 696eca87e8dSBarry Smith Not Collective 697eca87e8dSBarry Smith 698d382aafbSBarry Smith Input Parameter: 699d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 700d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7011795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7021795a4d1SJed Brown 7031795a4d1SJed Brown Output Parameter: 7041795a4d1SJed Brown + r1 - memory allocated in first chunk 7051795a4d1SJed Brown . r2 - memory allocated in second chunk 7061795a4d1SJed Brown - r3 - memory allocated in third chunk 7071795a4d1SJed Brown 7081795a4d1SJed Brown Level: developer 7091795a4d1SJed Brown 7101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7111795a4d1SJed Brown 7121795a4d1SJed Brown Concepts: memory allocation 7131795a4d1SJed Brown M*/ 7141795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7151795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7161795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7171795a4d1SJed Brown 7181795a4d1SJed Brown /*MC 719dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 720d382aafbSBarry Smith 721d382aafbSBarry Smith Synopsis: 722d382aafbSBarry Smith #include "petscsys.h" 723dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 724d382aafbSBarry Smith 725d382aafbSBarry Smith Not Collective 726d382aafbSBarry Smith 727d382aafbSBarry Smith Input Parameter: 728d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 729d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 730d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 731dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 732d382aafbSBarry Smith 733d382aafbSBarry Smith Output Parameter: 734d382aafbSBarry Smith + r1 - memory allocated in first chunk 735d382aafbSBarry Smith . r2 - memory allocated in second chunk 736d382aafbSBarry Smith . r3 - memory allocated in third chunk 737d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 738d382aafbSBarry Smith 739d382aafbSBarry Smith Level: developer 740d382aafbSBarry Smith 7411795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 742d382aafbSBarry Smith 743d382aafbSBarry Smith Concepts: memory allocation 744d382aafbSBarry Smith 745d382aafbSBarry Smith M*/ 746d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 747dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4)) 748d382aafbSBarry Smith #else 749dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 750dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) \ 751*278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 752*278791cbSMatthew G. Knepley || (!m1 ? (*(r1) = 0,0) : 0) || (!m2 ? (*(r2) = 0,0) : 0) || (!m3 ? (*(r3) = 0,0) : 0) || (!m4 ? (*(r4) = 0,0) : 0)) 753d382aafbSBarry Smith #endif 754d382aafbSBarry Smith 755d382aafbSBarry Smith /*MC 7561795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 757d382aafbSBarry Smith 758eca87e8dSBarry Smith Synopsis: 759f2ba6396SBarry Smith #include "petscsys.h" 7601795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 761eca87e8dSBarry Smith 762eca87e8dSBarry Smith Not Collective 763eca87e8dSBarry Smith 764d382aafbSBarry Smith Input Parameter: 765d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 766d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 767d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 7681795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 7691795a4d1SJed Brown 7701795a4d1SJed Brown Output Parameter: 7711795a4d1SJed Brown + r1 - memory allocated in first chunk 7721795a4d1SJed Brown . r2 - memory allocated in second chunk 7731795a4d1SJed Brown . r3 - memory allocated in third chunk 7741795a4d1SJed Brown - r4 - memory allocated in fourth chunk 7751795a4d1SJed Brown 7761795a4d1SJed Brown Level: developer 7771795a4d1SJed Brown 7781795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 7791795a4d1SJed Brown 7801795a4d1SJed Brown Concepts: memory allocation 7811795a4d1SJed Brown 7821795a4d1SJed Brown M*/ 7831795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 7841795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 7851795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 7861795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 7871795a4d1SJed Brown 7881795a4d1SJed Brown /*MC 789dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 790d382aafbSBarry Smith 791d382aafbSBarry Smith Synopsis: 792d382aafbSBarry Smith #include "petscsys.h" 793dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 794d382aafbSBarry Smith 795d382aafbSBarry Smith Not Collective 796d382aafbSBarry Smith 797d382aafbSBarry Smith Input Parameter: 798d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 799d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 800d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 801d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 802dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 803d382aafbSBarry Smith 804d382aafbSBarry Smith Output Parameter: 805d382aafbSBarry Smith + r1 - memory allocated in first chunk 806d382aafbSBarry Smith . r2 - memory allocated in second chunk 807d382aafbSBarry Smith . r3 - memory allocated in third chunk 808d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 809d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 810d382aafbSBarry Smith 811d382aafbSBarry Smith Level: developer 812d382aafbSBarry Smith 8131795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 814d382aafbSBarry Smith 815d382aafbSBarry Smith Concepts: memory allocation 816d382aafbSBarry Smith 817d382aafbSBarry Smith M*/ 818d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 819dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5)) 820d382aafbSBarry Smith #else 821dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 822dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) \ 823*278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 824*278791cbSMatthew G. Knepley || (!m1 ? (*(r1) = 0,0) : 0) || (!m2 ? (*(r2) = 0,0) : 0) || (!m3 ? (*(r3) = 0,0) : 0) || (!m4 ? (*(r4) = 0,0) : 0) || (!m5 ? (*(r5) = 0,0) : 0)) 825d382aafbSBarry Smith #endif 826d382aafbSBarry Smith 827d382aafbSBarry Smith /*MC 8281795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 829d382aafbSBarry Smith 830eca87e8dSBarry Smith Synopsis: 831f2ba6396SBarry Smith #include "petscsys.h" 8321795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 833eca87e8dSBarry Smith 834eca87e8dSBarry Smith Not Collective 835eca87e8dSBarry Smith 836d382aafbSBarry Smith Input Parameter: 837d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 838d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 839d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 840d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 8411795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8421795a4d1SJed Brown 8431795a4d1SJed Brown Output Parameter: 8441795a4d1SJed Brown + r1 - memory allocated in first chunk 8451795a4d1SJed Brown . r2 - memory allocated in second chunk 8461795a4d1SJed Brown . r3 - memory allocated in third chunk 8471795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8481795a4d1SJed Brown - r5 - memory allocated in fifth chunk 8491795a4d1SJed Brown 8501795a4d1SJed Brown Level: developer 8511795a4d1SJed Brown 8521795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 8531795a4d1SJed Brown 8541795a4d1SJed Brown Concepts: memory allocation 8551795a4d1SJed Brown 8561795a4d1SJed Brown M*/ 8571795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8581795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8591795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8601795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 861d382aafbSBarry Smith 862d382aafbSBarry Smith /*MC 863dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 864d382aafbSBarry Smith 865d382aafbSBarry Smith Synopsis: 866d382aafbSBarry Smith #include "petscsys.h" 867dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 868d382aafbSBarry Smith 869d382aafbSBarry Smith Not Collective 870d382aafbSBarry Smith 871d382aafbSBarry Smith Input Parameter: 872d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 873d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 874d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 875d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 876d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 877dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 878d382aafbSBarry Smith 879d382aafbSBarry Smith Output Parameter: 880d382aafbSBarry Smith + r1 - memory allocated in first chunk 881d382aafbSBarry Smith . r2 - memory allocated in second chunk 882d382aafbSBarry Smith . r3 - memory allocated in third chunk 883d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 884d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 885d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 886d382aafbSBarry Smith 887d382aafbSBarry Smith Level: developer 888d382aafbSBarry Smith 8891795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 890d382aafbSBarry Smith 891d382aafbSBarry Smith Concepts: memory allocation 892d382aafbSBarry Smith 893d382aafbSBarry Smith M*/ 894d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 895dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6)) 896d382aafbSBarry Smith #else 897dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 898dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) \ 899*278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 900*278791cbSMatthew G. Knepley || (!m1 ? (*(r1) = 0,0) : 0) || (!m2 ? (*(r2) = 0,0) : 0) || (!m3 ? (*(r3) = 0,0) : 0) || (!m4 ? (*(r4) = 0,0) : 0) || (!m5 ? (*(r5) = 0,0) : 0) || (!m6 ? (*(r6) = 0,0) : 0)) 901d382aafbSBarry Smith #endif 902d382aafbSBarry Smith 903d382aafbSBarry Smith /*MC 9041795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 905d382aafbSBarry Smith 906eca87e8dSBarry Smith Synopsis: 907f2ba6396SBarry Smith #include "petscsys.h" 9081795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 909eca87e8dSBarry Smith 910eca87e8dSBarry Smith Not Collective 911eca87e8dSBarry Smith 912d382aafbSBarry Smith Input Parameter: 913d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 914d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 915d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 916d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 917d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9181795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9191795a4d1SJed Brown 9201795a4d1SJed Brown Output Parameter: 9211795a4d1SJed Brown + r1 - memory allocated in first chunk 9221795a4d1SJed Brown . r2 - memory allocated in second chunk 9231795a4d1SJed Brown . r3 - memory allocated in third chunk 9241795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9251795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9261795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9271795a4d1SJed Brown 9281795a4d1SJed Brown Level: developer 9291795a4d1SJed Brown 9301795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9311795a4d1SJed Brown 9321795a4d1SJed Brown Concepts: memory allocation 9331795a4d1SJed Brown M*/ 9341795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9351795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9361795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9371795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9381795a4d1SJed Brown 9391795a4d1SJed Brown /*MC 940dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 941d382aafbSBarry Smith 942d382aafbSBarry Smith Synopsis: 943d382aafbSBarry Smith #include "petscsys.h" 944dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 945d382aafbSBarry Smith 946d382aafbSBarry Smith Not Collective 947d382aafbSBarry Smith 948d382aafbSBarry Smith Input Parameter: 949d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 950d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 951d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 952d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 953d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 954d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 955dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 956d382aafbSBarry Smith 957d382aafbSBarry Smith Output Parameter: 958d382aafbSBarry Smith + r1 - memory allocated in first chunk 959d382aafbSBarry Smith . r2 - memory allocated in second chunk 960d382aafbSBarry Smith . r3 - memory allocated in third chunk 961d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 962d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 963d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 964eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 965d382aafbSBarry Smith 966d382aafbSBarry Smith Level: developer 967d382aafbSBarry Smith 9681795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 969d382aafbSBarry Smith 970d382aafbSBarry Smith Concepts: memory allocation 971d382aafbSBarry Smith 972d382aafbSBarry Smith M*/ 973d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 974dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6) || PetscMalloc((m7)*sizeof(**(r7)),r7)) 975d382aafbSBarry Smith #else 976dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 977dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) \ 978*278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 979*278791cbSMatthew G. Knepley || (!m1 ? (*(r1) = 0,0) : 0) || (!m2 ? (*(r2) = 0,0) : 0) || (!m3 ? (*(r3) = 0,0) : 0) || (!m4 ? (*(r4) = 0,0) : 0) || (!m5 ? (*(r5) = 0,0) : 0) || (!m6 ? (*(r6) = 0,0) : 0) || (!m7 ? (*(r7) = 0,0) : 0)) 980d382aafbSBarry Smith #endif 981d382aafbSBarry Smith 982d382aafbSBarry Smith /*MC 9831795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 9841795a4d1SJed Brown 9851795a4d1SJed Brown Synopsis: 9861795a4d1SJed Brown #include "petscsys.h" 9871795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 9881795a4d1SJed Brown 9891795a4d1SJed Brown Not Collective 9901795a4d1SJed Brown 9911795a4d1SJed Brown Input Parameter: 9921795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 9931795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 9941795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 9951795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 9961795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 9971795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 9981795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 9991795a4d1SJed Brown 10001795a4d1SJed Brown Output Parameter: 10011795a4d1SJed Brown + r1 - memory allocated in first chunk 10021795a4d1SJed Brown . r2 - memory allocated in second chunk 10031795a4d1SJed Brown . r3 - memory allocated in third chunk 10041795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10051795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10061795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10071795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10081795a4d1SJed Brown 10091795a4d1SJed Brown Level: developer 10101795a4d1SJed Brown 10111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10121795a4d1SJed Brown 10131795a4d1SJed Brown Concepts: memory allocation 10141795a4d1SJed Brown M*/ 10151795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10167ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10171795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10181795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10197ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10201795a4d1SJed Brown 10211795a4d1SJed Brown /*MC 1022503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1023d382aafbSBarry Smith 1024eca87e8dSBarry Smith Synopsis: 1025f2ba6396SBarry Smith #include "petscsys.h" 1026b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1027eca87e8dSBarry Smith 1028eca87e8dSBarry Smith Not Collective 1029eca87e8dSBarry Smith 1030d382aafbSBarry Smith Output Parameter: 1031b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1032d382aafbSBarry Smith 1033d382aafbSBarry Smith Level: beginner 1034d382aafbSBarry Smith 1035ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1036d382aafbSBarry Smith 1037d382aafbSBarry Smith Concepts: memory allocation 1038d382aafbSBarry Smith 1039d382aafbSBarry Smith M*/ 1040b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1041ad0619ddSBarry Smith 1042ad0619ddSBarry Smith /*MC 1043b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1044ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1045ad0619ddSBarry Smith 1046ad0619ddSBarry Smith Synopsis: 1047f2ba6396SBarry Smith #include "petscsys.h" 1048b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1049ad0619ddSBarry Smith 1050ad0619ddSBarry Smith Not Collective 1051ad0619ddSBarry Smith 1052ad0619ddSBarry Smith Input Parameter: 1053b00a9115SJed Brown . obj - object memory is logged to 1054ad0619ddSBarry Smith 1055ad0619ddSBarry Smith Output Parameter: 1056b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1057ad0619ddSBarry Smith 1058ad0619ddSBarry Smith Level: developer 1059ad0619ddSBarry Smith 1060ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1061ad0619ddSBarry Smith 1062ad0619ddSBarry Smith Concepts: memory allocation 1063ad0619ddSBarry Smith 1064ad0619ddSBarry Smith M*/ 1065b00a9115SJed Brown #define PetscNewLog(o,b) (PetscNew((b)) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(**(b))) : 0)) 1066d382aafbSBarry Smith 1067d382aafbSBarry Smith /*MC 1068d382aafbSBarry Smith PetscFree - Frees memory 1069d382aafbSBarry Smith 1070eca87e8dSBarry Smith Synopsis: 1071f2ba6396SBarry Smith #include "petscsys.h" 1072eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1073eca87e8dSBarry Smith 1074eca87e8dSBarry Smith Not Collective 1075eca87e8dSBarry Smith 1076d382aafbSBarry Smith Input Parameter: 1077d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith Level: beginner 1080d382aafbSBarry Smith 1081d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith Concepts: memory allocation 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith M*/ 1088efca3c55SSatish Balay #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0))) 1089d382aafbSBarry Smith 1090d382aafbSBarry Smith /*MC 1091d382aafbSBarry Smith PetscFreeVoid - Frees memory 1092d382aafbSBarry Smith 1093d382aafbSBarry Smith Synopsis: 1094f2ba6396SBarry Smith #include "petscsys.h" 1095d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1096d382aafbSBarry Smith 1097eca87e8dSBarry Smith Not Collective 1098eca87e8dSBarry Smith 1099eca87e8dSBarry Smith Input Parameter: 1100eca87e8dSBarry Smith . memory - memory to free 1101eca87e8dSBarry Smith 1102d382aafbSBarry Smith Level: beginner 1103d382aafbSBarry Smith 1104d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1105d382aafbSBarry Smith 1106d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1107d382aafbSBarry Smith 1108d382aafbSBarry Smith Concepts: memory allocation 1109d382aafbSBarry Smith 1110d382aafbSBarry Smith M*/ 1111efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1112d382aafbSBarry Smith 1113d382aafbSBarry Smith 1114d382aafbSBarry Smith /*MC 1115d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1116d382aafbSBarry Smith 1117eca87e8dSBarry Smith Synopsis: 1118f2ba6396SBarry Smith #include "petscsys.h" 1119eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1120eca87e8dSBarry Smith 1121eca87e8dSBarry Smith Not Collective 1122eca87e8dSBarry Smith 1123d382aafbSBarry Smith Input Parameter: 1124d382aafbSBarry Smith + memory1 - memory to free 1125d382aafbSBarry Smith - memory2 - 2nd memory to free 1126d382aafbSBarry Smith 1127d382aafbSBarry Smith Level: developer 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1130d382aafbSBarry Smith 1131d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith Concepts: memory allocation 1134d382aafbSBarry Smith 1135d382aafbSBarry Smith M*/ 1136d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1137d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1138d382aafbSBarry Smith #else 113981dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 1140d382aafbSBarry Smith #endif 1141d382aafbSBarry Smith 1142d382aafbSBarry Smith /*MC 1143d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1144d382aafbSBarry Smith 1145eca87e8dSBarry Smith Synopsis: 1146f2ba6396SBarry Smith #include "petscsys.h" 1147eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1148eca87e8dSBarry Smith 1149eca87e8dSBarry Smith Not Collective 1150eca87e8dSBarry Smith 1151d382aafbSBarry Smith Input Parameter: 1152d382aafbSBarry Smith + memory1 - memory to free 1153d382aafbSBarry Smith . memory2 - 2nd memory to free 1154d382aafbSBarry Smith - memory3 - 3rd memory to free 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith Level: developer 1157d382aafbSBarry Smith 1158d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1159d382aafbSBarry Smith 1160d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith Concepts: memory allocation 1163d382aafbSBarry Smith 1164d382aafbSBarry Smith M*/ 1165d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1166d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1167d382aafbSBarry Smith #else 116881dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 1169d382aafbSBarry Smith #endif 1170d382aafbSBarry Smith 1171d382aafbSBarry Smith /*MC 1172d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1173d382aafbSBarry Smith 1174eca87e8dSBarry Smith Synopsis: 1175f2ba6396SBarry Smith #include "petscsys.h" 1176eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1177eca87e8dSBarry Smith 1178eca87e8dSBarry Smith Not Collective 1179eca87e8dSBarry Smith 1180d382aafbSBarry Smith Input Parameter: 1181d382aafbSBarry Smith + m1 - memory to free 1182d382aafbSBarry Smith . m2 - 2nd memory to free 1183d382aafbSBarry Smith . m3 - 3rd memory to free 1184d382aafbSBarry Smith - m4 - 4th memory to free 1185d382aafbSBarry Smith 1186d382aafbSBarry Smith Level: developer 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1191d382aafbSBarry Smith 1192d382aafbSBarry Smith Concepts: memory allocation 1193d382aafbSBarry Smith 1194d382aafbSBarry Smith M*/ 1195d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1196d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1197d382aafbSBarry Smith #else 119881dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1199d382aafbSBarry Smith #endif 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith /*MC 1202d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1203d382aafbSBarry Smith 1204eca87e8dSBarry Smith Synopsis: 1205f2ba6396SBarry Smith #include "petscsys.h" 1206eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1207eca87e8dSBarry Smith 1208eca87e8dSBarry Smith Not Collective 1209eca87e8dSBarry Smith 1210d382aafbSBarry Smith Input Parameter: 1211d382aafbSBarry Smith + m1 - memory to free 1212d382aafbSBarry Smith . m2 - 2nd memory to free 1213d382aafbSBarry Smith . m3 - 3rd memory to free 1214d382aafbSBarry Smith . m4 - 4th memory to free 1215d382aafbSBarry Smith - m5 - 5th memory to free 1216d382aafbSBarry Smith 1217d382aafbSBarry Smith Level: developer 1218d382aafbSBarry Smith 1219d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1220d382aafbSBarry Smith 1221d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Concepts: memory allocation 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith M*/ 1226d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1227d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1228d382aafbSBarry Smith #else 122981dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1230d382aafbSBarry Smith #endif 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith /*MC 1234d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1235d382aafbSBarry Smith 1236eca87e8dSBarry Smith Synopsis: 1237f2ba6396SBarry Smith #include "petscsys.h" 1238eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1239eca87e8dSBarry Smith 1240eca87e8dSBarry Smith Not Collective 1241eca87e8dSBarry Smith 1242d382aafbSBarry Smith Input Parameter: 1243d382aafbSBarry Smith + m1 - memory to free 1244d382aafbSBarry Smith . m2 - 2nd memory to free 1245d382aafbSBarry Smith . m3 - 3rd memory to free 1246d382aafbSBarry Smith . m4 - 4th memory to free 1247d382aafbSBarry Smith . m5 - 5th memory to free 1248d382aafbSBarry Smith - m6 - 6th memory to free 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith Level: developer 1252d382aafbSBarry Smith 1253d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith Concepts: memory allocation 1258d382aafbSBarry Smith 1259d382aafbSBarry Smith M*/ 1260d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1261d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1262d382aafbSBarry Smith #else 126381dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1264d382aafbSBarry Smith #endif 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith /*MC 1267d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1268d382aafbSBarry Smith 1269eca87e8dSBarry Smith Synopsis: 1270f2ba6396SBarry Smith #include "petscsys.h" 1271eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1272eca87e8dSBarry Smith 1273eca87e8dSBarry Smith Not Collective 1274eca87e8dSBarry Smith 1275d382aafbSBarry Smith Input Parameter: 1276d382aafbSBarry Smith + m1 - memory to free 1277d382aafbSBarry Smith . m2 - 2nd memory to free 1278d382aafbSBarry Smith . m3 - 3rd memory to free 1279d382aafbSBarry Smith . m4 - 4th memory to free 1280d382aafbSBarry Smith . m5 - 5th memory to free 1281d382aafbSBarry Smith . m6 - 6th memory to free 1282d382aafbSBarry Smith - m7 - 7th memory to free 1283d382aafbSBarry Smith 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Level: developer 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1290d382aafbSBarry Smith PetscMalloc7() 1291d382aafbSBarry Smith 1292d382aafbSBarry Smith Concepts: memory allocation 1293d382aafbSBarry Smith 1294d382aafbSBarry Smith M*/ 1295d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1296d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1297d382aafbSBarry Smith #else 129881dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1299d382aafbSBarry Smith #endif 1300d382aafbSBarry Smith 1301efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1302efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1303efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1305d382aafbSBarry Smith 1306d382aafbSBarry Smith /* 1307a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1308a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1309a5057860SBarry Smith timing etc. 1310a5057860SBarry Smith */ 1311a5057860SBarry Smith typedef double PetscLogDouble; 1312a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1313a5057860SBarry Smith 1314a5057860SBarry Smith /* 131566d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1316d382aafbSBarry Smith */ 1317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1321014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13220acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1323efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1325574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1327d382aafbSBarry Smith 1328d382aafbSBarry Smith /*E 1329d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1330d382aafbSBarry Smith 1331d382aafbSBarry Smith Level: beginner 1332d382aafbSBarry Smith 1333d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1334d382aafbSBarry Smith 1335d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1336d382aafbSBarry Smith PetscDataTypeGetSize() 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith E*/ 1339d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13402d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 13416a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1342d382aafbSBarry Smith 1343d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1344d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1345d382aafbSBarry Smith #else 1346ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1347d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 134859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 134959a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1350d382aafbSBarry Smith #else 1351d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1352d382aafbSBarry Smith #endif 1353d382aafbSBarry Smith #endif 1354ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1355d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 135659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 135759a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1358d382aafbSBarry Smith #else 1359d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1360d382aafbSBarry Smith #endif 1361d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1362d382aafbSBarry Smith 1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 13668e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1367d382aafbSBarry Smith 1368d382aafbSBarry Smith /* 1369d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1370d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1371d382aafbSBarry Smith functionality and/or error checking. 1372d382aafbSBarry Smith */ 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1377d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 13892f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 13942c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 139747340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 13986fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1400d382aafbSBarry Smith 1401573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1402573b0fb4SBarry Smith 1403d382aafbSBarry Smith /*S 1404d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1405d382aafbSBarry Smith 1406d382aafbSBarry Smith Level: intermediate 1407d382aafbSBarry Smith 1408d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1409d382aafbSBarry Smith S*/ 1410d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1411d382aafbSBarry Smith 1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1415d382aafbSBarry Smith 1416a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1417a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1418a53986e1SJed Brown 1419d382aafbSBarry Smith /* 1420d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1421d382aafbSBarry Smith */ 1422014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14237c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1424014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14252414b3c7SJed Brown #else 14262414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14272414b3c7SJed Brown #endif 14282414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1429014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1430014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1431d9822059SBarry Smith #else 1432d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1433d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1434d9822059SBarry Smith #endif 1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1436d382aafbSBarry Smith 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1439eb3f98d2SBarry Smith 1440d382aafbSBarry Smith /*S 1441d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1442d382aafbSBarry Smith 1443d382aafbSBarry Smith Level: beginner 1444d382aafbSBarry Smith 14452981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1446d382aafbSBarry Smith 14471890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1448d382aafbSBarry Smith S*/ 1449d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1450d382aafbSBarry Smith 1451270bf2e7SJed Brown /*MC 1452127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1453127c8a3bSJed Brown 1454127c8a3bSJed Brown Level: developer 1455127c8a3bSJed Brown 1456127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1457127c8a3bSJed Brown 1458127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1459127c8a3bSJed Brown M*/ 1460127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1461127c8a3bSJed Brown 1462127c8a3bSJed Brown /*MC 1463270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1464270bf2e7SJed Brown 1465270bf2e7SJed Brown Level: developer 1466270bf2e7SJed Brown 1467270bf2e7SJed Brown Notes: 1468270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1469270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1470270bf2e7SJed Brown 14718dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1472270bf2e7SJed Brown M*/ 1473270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1474270bf2e7SJed Brown 1475d382aafbSBarry Smith /*S 1476140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1477d382aafbSBarry Smith by string name 1478d382aafbSBarry Smith 1479d382aafbSBarry Smith Level: advanced 1480d382aafbSBarry Smith 1481140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1482d382aafbSBarry Smith S*/ 1483140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1484d382aafbSBarry Smith 1485d382aafbSBarry Smith /*E 1486d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1487d382aafbSBarry Smith 1488d382aafbSBarry Smith Level: beginner 1489d382aafbSBarry Smith 1490d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1491d382aafbSBarry Smith 1492d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1493d382aafbSBarry Smith 1494d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1495d382aafbSBarry Smith 1496d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1497d382aafbSBarry Smith 1498d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1499d382aafbSBarry Smith 1500d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1501d382aafbSBarry Smith E*/ 1502d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1503d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1504d6a4318aSJed Brown 1505639ff905SBarry Smith /* 1506639ff905SBarry Smith Defines PETSc error handling. 1507639ff905SBarry Smith */ 1508639ff905SBarry Smith #include <petscerror.h> 1509d382aafbSBarry Smith 15100700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1511014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1512014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1513014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1514d382aafbSBarry Smith 1515d382aafbSBarry Smith /* 1516d382aafbSBarry Smith Routines that get memory usage information from the OS 1517d382aafbSBarry Smith */ 1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1519014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1521d382aafbSBarry Smith 1522014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1524d382aafbSBarry Smith 1525d382aafbSBarry Smith /* 1526d382aafbSBarry Smith Initialization of PETSc 1527d382aafbSBarry Smith */ 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1536014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1537014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1538d382aafbSBarry Smith 1539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1540607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1541d382aafbSBarry Smith 1542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1543014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1546d382aafbSBarry Smith 1547d382aafbSBarry Smith /* 1548d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15492981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1550d382aafbSBarry Smith */ 1551638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1552638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1553638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1554d382aafbSBarry Smith 1555d382aafbSBarry Smith /* 1556d382aafbSBarry Smith Functions that can act on any PETSc object. 1557d382aafbSBarry Smith */ 1558014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1577bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1578bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1586d382aafbSBarry Smith 1587665c2dedSJed Brown #include <petscviewertypes.h> 1588639ff905SBarry Smith #include <petscoptions.h> 1589639ff905SBarry Smith 1590639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1591dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1592639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 15930005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 15940005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1602ce1779c8SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,const char[],const char[]); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1608d382aafbSBarry Smith 1609e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16107aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1611e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1612e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1613e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1614e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1615e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1616e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1617e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1618e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1619e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 162015681b3cSBarry Smith 1621ec7429eaSBarry Smith #else 16227aab2a10SBarry Smith #define PetscSAWsBlock() 0 1623e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1624e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1625e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1626e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1627e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1628e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1629e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1630e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1631e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 163215681b3cSBarry Smith 1633ec7429eaSBarry Smith #endif 1634b90c6cbeSBarry Smith 16357d5d4d99SBarry Smith typedef void* PetscDLHandle; 1636e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 163782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 163882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 163982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16407d5d4d99SBarry Smith 1641d382aafbSBarry Smith 16425fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1643a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16445fe58b6fSBarry Smith #endif 16457eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1646a64a8e02SBarry Smith 1647d382aafbSBarry Smith /*S 1648140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1649d382aafbSBarry Smith 16501d0fab5eSBarry Smith Level: developer 1651d382aafbSBarry Smith 16521d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16531d0fab5eSBarry Smith 1654140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1655d382aafbSBarry Smith S*/ 1656140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1657d382aafbSBarry Smith 1658140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1659140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1660140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1661140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1662140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1663140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1664d382aafbSBarry Smith 1665d382aafbSBarry Smith /* 1666503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1667d382aafbSBarry Smith link libraries that will be loaded as needed. 1668d382aafbSBarry Smith */ 1669a240a19fSJed Brown 1670a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1671a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1672140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 16731c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 16741c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1675140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1676140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1677140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1678140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1679d382aafbSBarry Smith 1680d382aafbSBarry Smith /*S 1681d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1682d382aafbSBarry Smith 1683d382aafbSBarry Smith Level: advanced 1684d382aafbSBarry Smith 1685d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1686d382aafbSBarry Smith S*/ 1687d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1688014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1696d382aafbSBarry Smith 1697d382aafbSBarry Smith /* 1698d382aafbSBarry Smith Useful utility routines 1699d382aafbSBarry Smith */ 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1706d382aafbSBarry Smith 1707503cfb0cSBarry Smith /* 1708ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1709503cfb0cSBarry Smith 1710503cfb0cSBarry Smith Notes: This is useful in cases like 1711503cfb0cSBarry Smith $ int *a; 1712ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1713ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1714503cfb0cSBarry Smith */ 1715d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1716503cfb0cSBarry Smith 1717cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1718cae2f346SBarry Smith # include <valgrind/valgrind.h> 1719cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1720cae2f346SBarry Smith #else 1721cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1722cae2f346SBarry Smith #endif 1723cae2f346SBarry Smith 1724238ccf28SShri Abhyankar 1725d382aafbSBarry Smith /*MC 1726d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1727d382aafbSBarry Smith 1728d382aafbSBarry Smith Synopsis: 1729f2ba6396SBarry Smith #include "petscsys.h" 1730d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1731d382aafbSBarry Smith 1732eca87e8dSBarry Smith Not Collective 1733eca87e8dSBarry Smith 1734d382aafbSBarry Smith Input Parameters: 1735d382aafbSBarry Smith . format - the usual printf() format string 1736d382aafbSBarry Smith 1737d382aafbSBarry Smith Level: developer 1738d382aafbSBarry Smith 1739d382aafbSBarry Smith Fortran Note: 1740d382aafbSBarry Smith This routine is not supported in Fortran. 1741d382aafbSBarry Smith 1742d382aafbSBarry Smith Concepts: help messages^printing 1743d382aafbSBarry Smith Concepts: printing^help messages 1744d382aafbSBarry Smith 1745d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1746d382aafbSBarry Smith M*/ 1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1748d382aafbSBarry Smith 1749fcfd50ebSBarry Smith /* 1750fcfd50ebSBarry Smith Defines PETSc profiling. 1751fcfd50ebSBarry Smith */ 17522c8e378dSBarry Smith #include <petsclog.h> 1753fcfd50ebSBarry Smith 1754b90c6cbeSBarry Smith 1755fcfd50ebSBarry Smith 1756fcfd50ebSBarry Smith /* 1757fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1758fcfd50ebSBarry Smith */ 1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1766fcfd50ebSBarry Smith 1767fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1768fcfd50ebSBarry Smith #include <stdarg.h> 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1772fcfd50ebSBarry Smith 1773fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1775fcfd50ebSBarry Smith #endif 1776fcfd50ebSBarry Smith 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1780d382aafbSBarry Smith 1781d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 178396a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 178474ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1785d382aafbSBarry Smith #endif 1786d382aafbSBarry Smith 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 17890ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1794d382aafbSBarry Smith 1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1796d382aafbSBarry Smith 1797d382aafbSBarry Smith /*S 1798d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1799d382aafbSBarry Smith 1800d382aafbSBarry Smith Level: advanced 1801d382aafbSBarry Smith 1802d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1803d382aafbSBarry Smith S*/ 1804014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1805d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith /* 1813d382aafbSBarry Smith For use in debuggers 1814d382aafbSBarry Smith */ 1815014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1816014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1820d382aafbSBarry Smith 1821a663daf8SBarry Smith #include <stddef.h> 1822a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1823d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1824d382aafbSBarry Smith #include <stdlib.h> 1825d382aafbSBarry Smith #endif 18266c7e564aSBarry Smith 18274a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1828d382aafbSBarry Smith #include <xmmintrin.h> 1829d382aafbSBarry Smith #endif 1830d382aafbSBarry Smith 1831fcfd50ebSBarry Smith #undef __FUNCT__ 1832fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1833d382aafbSBarry Smith /*@C 1834d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1835d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1836d382aafbSBarry Smith PetscMemmove() in that case. 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith Not Collective 1839d382aafbSBarry Smith 1840d382aafbSBarry Smith Input Parameters: 1841d382aafbSBarry Smith + b - pointer to initial memory space 1842d382aafbSBarry Smith - n - length (in bytes) of space to copy 1843d382aafbSBarry Smith 1844d382aafbSBarry Smith Output Parameter: 1845d382aafbSBarry Smith . a - pointer to copy space 1846d382aafbSBarry Smith 1847d382aafbSBarry Smith Level: intermediate 1848d382aafbSBarry Smith 1849d382aafbSBarry Smith Compile Option: 1850d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1851d382aafbSBarry Smith for memory copies on double precision values. 1852d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1853d382aafbSBarry Smith for memory copies on double precision values. 1854d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1855d382aafbSBarry Smith for memory copies on double precision values. 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith Note: 1858d382aafbSBarry Smith This routine is analogous to memcpy(). 1859d382aafbSBarry Smith 1860503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1861503cfb0cSBarry Smith 1862d382aafbSBarry Smith Concepts: memory^copying 1863d382aafbSBarry Smith Concepts: copying^memory 1864d382aafbSBarry Smith 1865d382aafbSBarry Smith .seealso: PetscMemmove() 1866d382aafbSBarry Smith 1867d382aafbSBarry Smith @*/ 18687087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1869d382aafbSBarry Smith { 1870d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1871d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1872d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1873a7e36092SMatthew G Knepley PetscFunctionBegin; 1874e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1875e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1876a7e36092SMatthew G Knepley #else 1877d382aafbSBarry Smith PetscFunctionBegin; 1878a7e36092SMatthew G Knepley #endif 1879d382aafbSBarry Smith if (a != b) { 1880d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1881e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1882d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1883d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1884d382aafbSBarry Smith #endif 1885d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1886d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1887d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1888d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1889c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1890c5df96a5SBarry Smith PetscErrorCode ierr; 1891c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 18928b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1893d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1894d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1895d382aafbSBarry Smith #else 1896d382aafbSBarry Smith size_t i; 1897d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1898d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1899d382aafbSBarry Smith #endif 1900d382aafbSBarry Smith } else { 1901d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1902d382aafbSBarry Smith } 1903d382aafbSBarry Smith #else 1904d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1905d382aafbSBarry Smith #endif 1906d382aafbSBarry Smith } 1907d382aafbSBarry Smith PetscFunctionReturn(0); 1908d382aafbSBarry Smith } 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith /*@C 1911d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1912d382aafbSBarry Smith 1913d382aafbSBarry Smith Not Collective 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith Input Parameters: 1916d382aafbSBarry Smith + a - pointer to beginning memory location 1917d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1918d382aafbSBarry Smith 1919d382aafbSBarry Smith Level: intermediate 1920d382aafbSBarry Smith 1921d382aafbSBarry Smith Compile Option: 1922d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1923d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1924d382aafbSBarry Smith 1925503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1926503cfb0cSBarry Smith 1927d382aafbSBarry Smith Concepts: memory^zeroing 1928d382aafbSBarry Smith Concepts: zeroing^memory 1929d382aafbSBarry Smith 1930d382aafbSBarry Smith .seealso: PetscMemcpy() 1931d382aafbSBarry Smith @*/ 19327087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1933d382aafbSBarry Smith { 1934d382aafbSBarry Smith if (n > 0) { 1935d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1936e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1937d382aafbSBarry Smith #endif 1938d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1939d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1940d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1941d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1942d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1943d382aafbSBarry Smith } else { 1944d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1945d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1946d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1947d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1948d382aafbSBarry Smith } else { 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1951d382aafbSBarry Smith bzero((char *)a,n); 1952d382aafbSBarry Smith #else 1953d382aafbSBarry Smith memset((char*)a,0,n); 1954d382aafbSBarry Smith #endif 1955d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1956d382aafbSBarry Smith } 1957d382aafbSBarry Smith #endif 1958d382aafbSBarry Smith } 1959d382aafbSBarry Smith return 0; 1960d382aafbSBarry Smith } 1961d382aafbSBarry Smith 1962d382aafbSBarry Smith /*MC 1963d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1964d382aafbSBarry Smith 1965eca87e8dSBarry Smith Synopsis: 1966f2ba6396SBarry Smith #include "petscsys.h" 1967eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1968eca87e8dSBarry Smith 1969d382aafbSBarry Smith Not Collective 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith Input Parameters: 1972d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1973d382aafbSBarry Smith . n - number of elements to fetch 1974d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 197550d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1976d382aafbSBarry Smith 1977d382aafbSBarry Smith Level: developer 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith Notes: 1980d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1981d382aafbSBarry Smith 198250d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 198350d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 198450d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 198563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 198663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 198763cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1990d382aafbSBarry Smith address). 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith Concepts: memory 1993d382aafbSBarry Smith M*/ 1994d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1995d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1996d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1997d382aafbSBarry Smith } while (0) 1998d382aafbSBarry Smith 1999d382aafbSBarry Smith /* 2000d382aafbSBarry Smith Determine if some of the kernel computation routines use 2001d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2002d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2003d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2004e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2005d382aafbSBarry Smith */ 2006d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2007d382aafbSBarry Smith 2008d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2009d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2010d382aafbSBarry Smith #endif 2011d382aafbSBarry Smith 20125a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20135a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2014d382aafbSBarry Smith #endif 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2017d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2018d382aafbSBarry Smith #endif 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2021d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2022d382aafbSBarry Smith #endif 2023d382aafbSBarry Smith 2024d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2025d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2026d382aafbSBarry Smith #endif 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2029d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2030d382aafbSBarry Smith #endif 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2033d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2034d382aafbSBarry Smith #endif 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2037d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2038d382aafbSBarry Smith #endif 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2041d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2042d382aafbSBarry Smith #endif 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2045d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2046d382aafbSBarry Smith #endif 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2049d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2050d382aafbSBarry Smith #endif 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2053d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2057d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2058d382aafbSBarry Smith #endif 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2061d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2062d382aafbSBarry Smith #endif 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith #endif 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith /* 2067d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2068d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2069d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2070d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2071d382aafbSBarry Smith ugly extern "C" {} wrappers. 2072d382aafbSBarry Smith */ 2073d382aafbSBarry Smith #if defined(__cplusplus) 2074d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2075d382aafbSBarry Smith #define EXTERN_C_END } 2076d382aafbSBarry Smith #else 2077d382aafbSBarry Smith #define EXTERN_C_BEGIN 2078d382aafbSBarry Smith #define EXTERN_C_END 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2082d382aafbSBarry Smith 2083d382aafbSBarry Smith /*MC 2084d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2085d382aafbSBarry Smith communication 2086d382aafbSBarry Smith 2087d382aafbSBarry Smith Level: beginner 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2090d382aafbSBarry Smith 2091d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2092d382aafbSBarry Smith M*/ 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith /*MC 2095d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2096d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2097d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2098d382aafbSBarry Smith 2099d382aafbSBarry Smith 2100d382aafbSBarry Smith Level: beginner 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2103d382aafbSBarry Smith M*/ 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith /*MC 21068619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21078619c96cSJed Brown 21088619c96cSJed Brown Synopsis: 21098619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 21108619c96cSJed Brown #include <petscsys.h> 21118619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21128619c96cSJed Brown 21138619c96cSJed Brown Level: beginner 21148619c96cSJed Brown 21158619c96cSJed Brown Note: 21168619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 21178619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 21188619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 21198619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 21208619c96cSJed Brown 21218619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21228619c96cSJed Brown M*/ 21238619c96cSJed Brown 21248619c96cSJed Brown /*MC 2125d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2126d382aafbSBarry Smith 2127d382aafbSBarry Smith Level: beginner 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2130d382aafbSBarry Smith M*/ 2131d382aafbSBarry Smith 2132d382aafbSBarry Smith /*MC 2133d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2134d382aafbSBarry Smith Level: beginner 2135d382aafbSBarry Smith 2136d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2137d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2138d382aafbSBarry Smith 2139d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2140d382aafbSBarry Smith M*/ 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith /*MC 2143d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2144d382aafbSBarry Smith 2145d382aafbSBarry Smith Level: beginner 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2148d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2151d382aafbSBarry Smith M*/ 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith /*MC 2154d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2155d382aafbSBarry Smith 2156d382aafbSBarry Smith Level: beginner 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2159d382aafbSBarry Smith pass this value 2160d382aafbSBarry Smith 2161d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2162d382aafbSBarry Smith M*/ 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2165d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2166014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2167014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2168d382aafbSBarry Smith #else 2169d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2170d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2171d382aafbSBarry Smith #endif 2172d382aafbSBarry Smith #endif 2173d382aafbSBarry Smith 2174d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2175d382aafbSBarry Smith 2176d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2177d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2178d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2179d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2180d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2181d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2182d382aafbSBarry Smith 2183c5df96a5SBarry Smith #undef __FUNCT__ 2184c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 2185c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2186c5df96a5SBarry Smith { 2187c5df96a5SBarry Smith PetscFunctionBegin; 2188c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2189c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2190c5df96a5SBarry Smith #endif 2191c5df96a5SBarry Smith *b = (PetscBLASInt)(a); 2192c5df96a5SBarry Smith PetscFunctionReturn(0); 2193c5df96a5SBarry Smith } 2194c5df96a5SBarry Smith 21954dc2109aSBarry Smith #undef __FUNCT__ 21964dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 21974dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 21984dc2109aSBarry Smith { 21994dc2109aSBarry Smith PetscFunctionBegin; 22004dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22014dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22024dc2109aSBarry Smith #endif 22034dc2109aSBarry Smith *b = (PetscMPIInt)(a); 22044dc2109aSBarry Smith PetscFunctionReturn(0); 22054dc2109aSBarry Smith } 22064dc2109aSBarry Smith 2207c5df96a5SBarry Smith 2208d382aafbSBarry Smith /* 22092981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2210d382aafbSBarry Smith */ 2211d382aafbSBarry Smith #if defined(hz) 2212d382aafbSBarry Smith #undef hz 2213d382aafbSBarry Smith #endif 2214d382aafbSBarry Smith 2215d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith 2218d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2219d382aafbSBarry Smith #include <limits.h> 2220d382aafbSBarry Smith #endif 2221d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2222d382aafbSBarry Smith #include <sys/param.h> 2223d382aafbSBarry Smith #endif 2224d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2225d382aafbSBarry Smith #include <sys/types.h> 2226d382aafbSBarry Smith #endif 2227d382aafbSBarry Smith #if defined(MAXPATHLEN) 2228d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2229d382aafbSBarry Smith #elif defined(MAX_PATH) 2230d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2231d382aafbSBarry Smith #elif defined(_MAX_PATH) 2232d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2233d382aafbSBarry Smith #else 2234d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2235d382aafbSBarry Smith #endif 2236d382aafbSBarry Smith 2237d382aafbSBarry Smith /*MC 2238d382aafbSBarry Smith 2239d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2240d382aafbSBarry Smith 2241d382aafbSBarry Smith $ 1) classic Fortran 77 style 2242d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2243d382aafbSBarry Smith $ XXX variablename 2244d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2245d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2246d382aafbSBarry Smith $ 2247d382aafbSBarry Smith $ 2) classic Fortran 90 style 2248d1716517SSatish Balay $#include "finclude/petscXXX.h" 2249d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2250d382aafbSBarry Smith $ XXX variablename 2251d382aafbSBarry Smith $ 2252d382aafbSBarry Smith $ 3) Using Fortran modules 2253d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2254d382aafbSBarry Smith $ use petscXXXX 2255d382aafbSBarry Smith $ XXX variablename 2256d382aafbSBarry Smith $ 2257d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2258d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2259d382aafbSBarry Smith $ use petscXXXX 2260d382aafbSBarry Smith $ type(XXX) variablename 2261e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2262d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2263d382aafbSBarry Smith 2264d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2265d382aafbSBarry Smith 2266d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2267d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2268d382aafbSBarry Smith $ integer variablename 2269d382aafbSBarry Smith $ 2270d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2271d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2272d382aafbSBarry Smith 2273d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2274d382aafbSBarry Smith for only a few PETSc functions. 2275d382aafbSBarry Smith 2276d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2277d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2278d382aafbSBarry Smith you cannot have something like 2279d382aafbSBarry Smith $ PetscInt row,col 2280d382aafbSBarry Smith $ PetscScalar val 2281d382aafbSBarry Smith $ ... 2282d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2283d382aafbSBarry Smith You must instead have 2284d382aafbSBarry Smith $ PetscInt row(1),col(1) 2285d382aafbSBarry Smith $ PetscScalar val(1) 2286d382aafbSBarry Smith $ ... 2287d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2288d382aafbSBarry Smith 2289d382aafbSBarry Smith 2290d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2291d382aafbSBarry Smith 2292d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2293d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2294d382aafbSBarry Smith 2295d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2296d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2297d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2298d382aafbSBarry Smith 2299d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2300e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2301d382aafbSBarry Smith 2302d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2303d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2304d382aafbSBarry Smith 2305d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2306d382aafbSBarry Smith automatically by "make allfortranstubs". 2307d382aafbSBarry Smith 2308e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2309d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2310d382aafbSBarry Smith include their predecessors 2311d382aafbSBarry Smith 2312d382aafbSBarry Smith Level: beginner 2313d382aafbSBarry Smith 2314d382aafbSBarry Smith M*/ 2315d382aafbSBarry Smith 2316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2321014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 232227710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2323d382aafbSBarry Smith 2324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2325014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 232660e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 233117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 233217d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2333014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2335014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2336014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2337745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2339014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2341014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2342d382aafbSBarry Smith 2343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2345d382aafbSBarry Smith 234676bdecfbSBarry Smith /*J 2347d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2348d382aafbSBarry Smith 2349d382aafbSBarry Smith Level: beginner 2350d382aafbSBarry Smith 2351e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2352d382aafbSBarry Smith with the option --download-sprng 2353d382aafbSBarry Smith 23548f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 235576bdecfbSBarry Smith J*/ 235619fd82e9SBarry Smith typedef const char* PetscRandomType; 2357d382aafbSBarry Smith #define PETSCRAND "rand" 2358d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2359d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2360d382aafbSBarry Smith 2361d382aafbSBarry Smith /* Logging support */ 2362014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2363d382aafbSBarry Smith 2364607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2365d382aafbSBarry Smith 2366d382aafbSBarry Smith /*S 2367d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2368d382aafbSBarry Smith 2369d382aafbSBarry Smith Level: intermediate 2370d382aafbSBarry Smith 2371d382aafbSBarry Smith Concepts: random numbers 2372d382aafbSBarry Smith 2373d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2374d382aafbSBarry Smith S*/ 2375d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2376d382aafbSBarry Smith 2377d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2378140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2379014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2380d382aafbSBarry Smith 2381607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2382bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 238319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 238519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2386ce1779c8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,const char prefix[],const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,prefix,name);} 2387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2388d382aafbSBarry Smith 2389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2395014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2396014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2398d382aafbSBarry Smith 2399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2406d382aafbSBarry Smith 2407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2411014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2418e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2420d382aafbSBarry Smith 2421d382aafbSBarry Smith /* 2422d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2423d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2424d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2425d382aafbSBarry Smith PetscBinarySeek(). 2426d382aafbSBarry Smith */ 2427d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2428d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2429d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2430d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2431d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2432d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2433d382aafbSBarry Smith 2434d382aafbSBarry Smith /*E 2435d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2436d382aafbSBarry Smith 2437d382aafbSBarry Smith Level: advanced 2438d382aafbSBarry Smith 2439d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2440d382aafbSBarry Smith E*/ 2441d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2445d382aafbSBarry Smith 2446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2452d382aafbSBarry Smith 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2458f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2459d382aafbSBarry Smith 24606145cd65SJed Brown /*E 24616145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 24626145cd65SJed Brown 24636145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 24646145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 24656145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 24666145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 24676145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 24686145cd65SJed Brown 24696145cd65SJed Brown Level: developer 24706145cd65SJed Brown 24716145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 24726145cd65SJed Brown E*/ 24736145cd65SJed Brown typedef enum { 24746145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 24756145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 24766145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 24776145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 24786145cd65SJed Brown } PetscBuildTwoSidedType; 24796145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 24806145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 24816145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 24826145cd65SJed Brown 2483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2484d382aafbSBarry Smith 2485d382aafbSBarry Smith /*E 2486d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2487d382aafbSBarry Smith 2488d382aafbSBarry Smith Level: beginner 2489d382aafbSBarry Smith 2490d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2491d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2492d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2493d382aafbSBarry Smith E*/ 24946fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2495d382aafbSBarry Smith 2496d382aafbSBarry Smith /*MC 2497d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2498d382aafbSBarry Smith 2499d382aafbSBarry Smith Level: beginner 2500d382aafbSBarry Smith 2501d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2502eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2503eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2504d382aafbSBarry Smith 2505d382aafbSBarry Smith M*/ 2506d382aafbSBarry Smith 2507d382aafbSBarry Smith /*MC 2508d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2509d382aafbSBarry Smith value into that location 2510d382aafbSBarry Smith 2511d382aafbSBarry Smith Level: beginner 2512d382aafbSBarry Smith 2513d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2514eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2515eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2516d382aafbSBarry Smith 2517d382aafbSBarry Smith M*/ 2518d382aafbSBarry Smith 2519d382aafbSBarry Smith /*MC 2520d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2521d382aafbSBarry Smith 2522d382aafbSBarry Smith Level: beginner 2523d382aafbSBarry Smith 2524d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2525d382aafbSBarry Smith 2526d382aafbSBarry Smith M*/ 2527d382aafbSBarry Smith 2528ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2529ce94432eSBarry Smith 253045487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 253145487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 253245487dadSJed Brown 2533d382aafbSBarry Smith /*S 2534d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2535d382aafbSBarry Smith 2536d382aafbSBarry Smith Level: advanced 2537d382aafbSBarry Smith 2538d382aafbSBarry Smith Concepts: communicator, create 2539d382aafbSBarry Smith S*/ 2540d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2541d382aafbSBarry Smith 2542d382aafbSBarry Smith struct _n_PetscSubcomm { 2543d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2544d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2545d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 254645487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 254745487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2548708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 254945487dadSJed Brown PetscSubcommType type; 2550d382aafbSBarry Smith }; 2551d382aafbSBarry Smith 2552014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2553014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2555014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 255665d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2557053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2558f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2559d382aafbSBarry Smith 25600f453b92SJed Brown /*S 25610f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 25620f453b92SJed Brown 25630f453b92SJed Brown Level: developer 25640f453b92SJed Brown 25650f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 25660f453b92SJed Brown S*/ 25670f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 256813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 25690f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 257013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2571137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2572137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2573137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 257413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 257513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 25760f453b92SJed Brown 2577471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2578471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2579471ecdacSJed Brown * possible. */ 2580f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2581d382aafbSBarry Smith 2582dff31646SBarry Smith extern PetscSegBuffer PetscCitationsList; 25831f817a21SBarry Smith #undef __FUNCT__ 25841f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 25851f817a21SBarry Smith /*@C 25861f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 25871f817a21SBarry Smith 25881f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 25891f817a21SBarry Smith 25901f817a21SBarry Smith Input Parameters: 25911f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 25921f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 25931f817a21SBarry Smith 2594850545d0SSatish Balay Level: intermediate 2595850545d0SSatish Balay 25961f817a21SBarry Smith Options Database: 25971f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 25981f817a21SBarry Smith @*/ 2599dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2600dff31646SBarry Smith { 2601dff31646SBarry Smith size_t len; 2602dff31646SBarry Smith char *vstring; 2603dff31646SBarry Smith PetscErrorCode ierr; 2604dff31646SBarry Smith 26051f817a21SBarry Smith PetscFunctionBegin; 26068d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2607dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2608dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2609dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2610dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26111f817a21SBarry Smith PetscFunctionReturn(0); 2612dff31646SBarry Smith } 2613dff31646SBarry Smith 2614dff31646SBarry Smith 2615d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2616d382aafbSBarry Smith #undef __FUNCT__ 2617d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2618d382aafbSBarry Smith 2619d382aafbSBarry Smith #endif 2620