1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 35*2c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 44014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 45014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 4621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 47014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 48014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 49014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 5021f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 51d382aafbSBarry Smith #else 52014dd563SJed Brown # define PETSC_DLLEXPORT 53014dd563SJed Brown # define PETSC_DLLIMPORT 5421f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 55014dd563SJed Brown #endif 56014dd563SJed Brown 57014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 58014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 59014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 60014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 61014dd563SJed Brown #endif 62014dd563SJed Brown 63*2c280183SJed Brown #if defined(__cplusplus) 64014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 65638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 6621f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #else 68014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 69638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 706258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 71d382aafbSBarry Smith #endif 7227710113SBarry Smith 732c8e378dSBarry Smith #include <petscversion.h> 74301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 75d382aafbSBarry Smith 76d382aafbSBarry Smith /* ========================================================================== */ 77d382aafbSBarry Smith 78d382aafbSBarry Smith /* 79d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 80d382aafbSBarry Smith 81d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 82d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 83d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 84d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 85d382aafbSBarry Smith mpicxx.h directly in their code 86d382aafbSBarry Smith */ 87d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 88d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 892c8e378dSBarry Smith #include <mpi.h> 9065013866SBarry Smith 91d382aafbSBarry Smith /* 922981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 93d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 94d382aafbSBarry Smith */ 95d382aafbSBarry Smith #include <stdio.h> 96d382aafbSBarry Smith 97d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 98d382aafbSBarry Smith #if !defined(MPIAPI) 99d382aafbSBarry Smith #define MPIAPI 100d382aafbSBarry Smith #endif 101d382aafbSBarry Smith 102894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 103894dd566SJed Brown #if defined(__has_attribute) 104894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 105894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1068ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1078ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 108894dd566SJed Brown # endif 109894dd566SJed Brown #endif 110894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 111894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1128ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1138ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 114894dd566SJed Brown #endif 115b3506946SBarry Smith 116d382aafbSBarry Smith /*MC 117d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 118d382aafbSBarry Smith 119d382aafbSBarry Smith Level: beginner 120d382aafbSBarry Smith 121d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 122d382aafbSBarry Smith M*/ 123d382aafbSBarry Smith typedef int PetscErrorCode; 124d382aafbSBarry Smith 125d382aafbSBarry Smith /*MC 126d382aafbSBarry Smith 127503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 128d382aafbSBarry Smith (internal integer in the data structure used for error 1292981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1300700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 131d382aafbSBarry Smith 132d382aafbSBarry Smith Level: advanced 133d382aafbSBarry Smith 1340700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 135d382aafbSBarry Smith M*/ 1360700a824SBarry Smith typedef int PetscClassId; 137d382aafbSBarry Smith 138d382aafbSBarry Smith 139d382aafbSBarry Smith /*MC 140d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 141d382aafbSBarry Smith 142d382aafbSBarry Smith Level: intermediate 143d382aafbSBarry Smith 144d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1453b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 146d382aafbSBarry Smith 1474dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1482981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 149d382aafbSBarry Smith 150d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 151d382aafbSBarry Smith 152d382aafbSBarry Smith M*/ 153d382aafbSBarry Smith typedef int PetscMPIInt; 154d382aafbSBarry Smith 155d382aafbSBarry Smith /*MC 156d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 157d382aafbSBarry Smith 158d382aafbSBarry Smith Level: intermediate 159d382aafbSBarry Smith 160d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 161d382aafbSBarry Smith M*/ 162d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 1635a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 164d382aafbSBarry Smith 165d382aafbSBarry Smith /*MC 166d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1673b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 168d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 169d382aafbSBarry Smith 170d382aafbSBarry Smith Level: intermediate 171d382aafbSBarry Smith 172d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 173d382aafbSBarry Smith M*/ 174f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 175f505b413SSatish Balay typedef long long Petsc64bitInt; 176f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 177236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 178236ed0a3SSatish Balay #else 179f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 180236ed0a3SSatish Balay #endif 181d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 182236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 183d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 184d382aafbSBarry Smith #else 185d382aafbSBarry Smith typedef int PetscInt; 186d382aafbSBarry Smith #define MPIU_INT MPI_INT 187d382aafbSBarry Smith #endif 188236ed0a3SSatish Balay 189d382aafbSBarry Smith 190702bc34aSSatish Balay /*MC 191702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 192702bc34aSSatish Balay 193702bc34aSSatish Balay Level: intermediate 194702bc34aSSatish Balay 195702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 196702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 197702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 198702bc34aSSatish Balay 199c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2002981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 201702bc34aSSatish Balay 2022981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 203702bc34aSSatish Balay if you run ./configure with the option 204702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2052981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2062981ebdbSBarry Smith 2072981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2082981ebdbSBarry Smith 2092981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 210702bc34aSSatish Balay 211702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 212702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 213702bc34aSSatish Balay 214702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 215702bc34aSSatish Balay 216702bc34aSSatish Balay M*/ 217702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 218702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 219702bc34aSSatish Balay #else 220702bc34aSSatish Balay typedef int PetscBLASInt; 221702bc34aSSatish Balay #endif 222702bc34aSSatish Balay 22358b60935SBarry Smith /*EC 22458b60935SBarry Smith 2252981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 22658b60935SBarry Smith 22758b60935SBarry Smith Level: advanced 22858b60935SBarry Smith 22958b60935SBarry Smith .seealso: PetscObjectSetPrecision() 23058b60935SBarry Smith E*/ 23158b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 232014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 23358b60935SBarry Smith 234503cfb0cSBarry Smith /* 235503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 236503cfb0cSBarry Smith */ 237d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 238adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 239d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 240adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 241d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 242adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 243d382aafbSBarry Smith #else 244d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 245d382aafbSBarry Smith #endif 246d382aafbSBarry Smith 247d382aafbSBarry Smith 248d382aafbSBarry Smith /* 249d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 250d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 251d382aafbSBarry Smith */ 252014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 253d382aafbSBarry Smith 254d382aafbSBarry Smith /* 255d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 256d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 257d382aafbSBarry Smith */ 258014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 259d382aafbSBarry Smith 260d382aafbSBarry Smith /*MC 261d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 262d382aafbSBarry Smith 263d382aafbSBarry Smith Synopsis: 264f2ba6396SBarry Smith #include "petscsys.h" 265ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 266d382aafbSBarry Smith 267eca87e8dSBarry Smith Not Collective 268eca87e8dSBarry Smith 269d382aafbSBarry Smith Input Parameters: 270d382aafbSBarry Smith . cond - condition or expression 271d382aafbSBarry Smith 272d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 273d382aafbSBarry Smith branch is unlikely. 274d382aafbSBarry Smith 275d382aafbSBarry Smith Level: advanced 276d382aafbSBarry Smith 277d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 278d382aafbSBarry Smith M*/ 279d382aafbSBarry Smith 280d382aafbSBarry Smith /*MC 281d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 282d382aafbSBarry Smith 283d382aafbSBarry Smith Synopsis: 284f2ba6396SBarry Smith #include "petscsys.h" 285ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 286d382aafbSBarry Smith 287eca87e8dSBarry Smith Not Collective 288eca87e8dSBarry Smith 289d382aafbSBarry Smith Input Parameters: 290d382aafbSBarry Smith . cond - condition or expression 291d382aafbSBarry Smith 292d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 293d382aafbSBarry Smith branch is likely. 294d382aafbSBarry Smith 295d382aafbSBarry Smith Level: advanced 296d382aafbSBarry Smith 297d382aafbSBarry Smith .seealso: PetscUnlikely() 298d382aafbSBarry Smith M*/ 299d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 300d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 301d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 302d382aafbSBarry Smith #else 303cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 304cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 305d382aafbSBarry Smith #endif 306d382aafbSBarry Smith 307d382aafbSBarry Smith /* 308d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 309d382aafbSBarry Smith */ 3102c8e378dSBarry Smith #include <petscmath.h> 311d382aafbSBarry Smith 312d382aafbSBarry Smith /* 313d382aafbSBarry Smith Declare extern C stuff after including external header files 314d382aafbSBarry Smith */ 315d382aafbSBarry Smith 316d382aafbSBarry Smith 317d382aafbSBarry Smith /* 318d382aafbSBarry Smith Basic PETSc constants 319d382aafbSBarry Smith */ 320d382aafbSBarry Smith 321d382aafbSBarry Smith /*E 322ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 323d382aafbSBarry Smith 324d382aafbSBarry Smith Level: beginner 325d382aafbSBarry Smith 326ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 32734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 32834e82e7dSBarry Smith 329d382aafbSBarry Smith E*/ 330ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3316a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3325a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 33370b3c8c7SBarry Smith 33470b3c8c7SBarry Smith /*E 33570b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 33670b3c8c7SBarry Smith 33770b3c8c7SBarry Smith Level: beginner 33870b3c8c7SBarry Smith 33970b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 34070b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 34170b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 34270b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 34370b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 34470b3c8c7SBarry Smith 34570b3c8c7SBarry Smith E*/ 34670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3476a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 348d382aafbSBarry Smith 349d382aafbSBarry Smith /*MC 350ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 351d382aafbSBarry Smith 352d382aafbSBarry Smith Level: beginner 353d382aafbSBarry Smith 354d382aafbSBarry Smith Note: Zero integer 355d382aafbSBarry Smith 356ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 357d382aafbSBarry Smith M*/ 358d382aafbSBarry Smith 359d382aafbSBarry Smith /*MC 360ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 361d382aafbSBarry Smith 362d382aafbSBarry Smith Level: beginner 363d382aafbSBarry Smith 364d382aafbSBarry Smith Note: Nonzero integer 365d382aafbSBarry Smith 366ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 367d382aafbSBarry Smith M*/ 368d382aafbSBarry Smith 369d382aafbSBarry Smith /*MC 3700298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 371d382aafbSBarry Smith 372d382aafbSBarry Smith Level: beginner 373d382aafbSBarry Smith 374d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 375d382aafbSBarry Smith some default 376d382aafbSBarry Smith 377d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 378503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 379d382aafbSBarry Smith 380d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 381d382aafbSBarry Smith 382d382aafbSBarry Smith M*/ 3833bcbec90SJed Brown #define PETSC_NULL NULL 384d382aafbSBarry Smith 385d382aafbSBarry Smith /*MC 3860298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 387d382aafbSBarry Smith 388d382aafbSBarry Smith Level: beginner 389d382aafbSBarry Smith 390d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 391d382aafbSBarry Smith some default 392d382aafbSBarry Smith 393d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 394d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 395d382aafbSBarry Smith 396d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 397d382aafbSBarry Smith 398d382aafbSBarry Smith M*/ 3990298fd71SBarry Smith #define PETSC_IGNORE NULL 400d382aafbSBarry Smith 401d382aafbSBarry Smith /*MC 402557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 403557d4da8SBarry Smith where you wish PETSc to use the default. 404557d4da8SBarry Smith 405557d4da8SBarry Smith Level: beginner 406557d4da8SBarry Smith 407557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 408557d4da8SBarry Smith 409557d4da8SBarry Smith M*/ 410557d4da8SBarry Smith #define PETSC_DECIDE -1 411557d4da8SBarry Smith 412557d4da8SBarry Smith /*MC 413d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 414d382aafbSBarry Smith where you wish PETSc to compute the required value. 415d382aafbSBarry Smith 416d382aafbSBarry Smith Level: beginner 417d382aafbSBarry Smith 418557d4da8SBarry Smith 419557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 420557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 421557d4da8SBarry Smith 4220298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 423d382aafbSBarry Smith 424d382aafbSBarry Smith M*/ 425d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 426d382aafbSBarry Smith 427d382aafbSBarry Smith /*MC 428557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 429557d4da8SBarry Smith where you wish PETSc to use the default. 430557d4da8SBarry Smith 431557d4da8SBarry Smith Level: beginner 432557d4da8SBarry Smith 433557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 434557d4da8SBarry Smith 4350298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 436557d4da8SBarry Smith 437557d4da8SBarry Smith M*/ 438557d4da8SBarry Smith #define PETSC_DEFAULT -2 439557d4da8SBarry Smith 440557d4da8SBarry Smith /*MC 441d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 442d382aafbSBarry Smith all the processs that PETSc knows about. 443d382aafbSBarry Smith 444d382aafbSBarry Smith Level: beginner 445d382aafbSBarry Smith 446d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 447d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 448d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 449d382aafbSBarry Smith PetscInitialize() 450d382aafbSBarry Smith 451d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 452d382aafbSBarry Smith 453d382aafbSBarry Smith M*/ 454014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 455d382aafbSBarry Smith 456d382aafbSBarry Smith /*MC 457503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 458d382aafbSBarry Smith 459d382aafbSBarry Smith Level: beginner 460d382aafbSBarry Smith 461d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 462d382aafbSBarry Smith 463d382aafbSBarry Smith M*/ 464d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 465d382aafbSBarry Smith 466014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 467014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 468014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 469d382aafbSBarry Smith 470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 473d382aafbSBarry Smith 474d382aafbSBarry Smith /*MC 475d382aafbSBarry Smith PetscMalloc - Allocates memory 476d382aafbSBarry Smith 477eca87e8dSBarry Smith Synopsis: 478f2ba6396SBarry Smith #include "petscsys.h" 479eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 480eca87e8dSBarry Smith 481eca87e8dSBarry Smith Not Collective 482eca87e8dSBarry Smith 483d382aafbSBarry Smith Input Parameter: 484d382aafbSBarry Smith . m - number of bytes to allocate 485d382aafbSBarry Smith 486d382aafbSBarry Smith Output Parameter: 487d382aafbSBarry Smith . result - memory allocated 488d382aafbSBarry Smith 489d382aafbSBarry Smith Level: beginner 490d382aafbSBarry Smith 491d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 492d382aafbSBarry Smith 493d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 494d382aafbSBarry Smith properly handle not freeing the null pointer. 495d382aafbSBarry Smith 496d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 497d382aafbSBarry Smith 498d382aafbSBarry Smith Concepts: memory allocation 499d382aafbSBarry Smith 500d382aafbSBarry Smith M*/ 5012714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 502d382aafbSBarry Smith 503d382aafbSBarry Smith /*MC 504503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 505d382aafbSBarry Smith 506d382aafbSBarry Smith Synopsis: 507f2ba6396SBarry Smith #include "petscsys.h" 508d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 509d382aafbSBarry Smith 510eca87e8dSBarry Smith Not Collective 511eca87e8dSBarry Smith 512eca87e8dSBarry Smith Input Parameters: 513eca87e8dSBarry Smith . addr - address to align (any pointer type) 514eca87e8dSBarry Smith 515d382aafbSBarry Smith Level: developer 516d382aafbSBarry Smith 517d382aafbSBarry Smith .seealso: PetscMallocAlign() 518d382aafbSBarry Smith 519d382aafbSBarry Smith Concepts: memory allocation 520d382aafbSBarry Smith M*/ 521d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 522d382aafbSBarry Smith 523d382aafbSBarry Smith /*MC 524503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 525d382aafbSBarry Smith 526eca87e8dSBarry Smith Synopsis: 527f2ba6396SBarry Smith #include "petscsys.h" 528eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 529eca87e8dSBarry Smith 530eca87e8dSBarry Smith Not Collective 531eca87e8dSBarry Smith 532d382aafbSBarry Smith Input Parameter: 533d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 534d382aafbSBarry Smith . t1 - type of first memory elements 535d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 536d382aafbSBarry Smith - t2 - type of second memory elements 537d382aafbSBarry Smith 538d382aafbSBarry Smith Output Parameter: 539d382aafbSBarry Smith + r1 - memory allocated in first chunk 540d382aafbSBarry Smith - r2 - memory allocated in second chunk 541d382aafbSBarry Smith 542d382aafbSBarry Smith Level: developer 543d382aafbSBarry Smith 544d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 545d382aafbSBarry Smith 546d382aafbSBarry Smith Concepts: memory allocation 547d382aafbSBarry Smith 548d382aafbSBarry Smith M*/ 549d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 550d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 551d382aafbSBarry Smith #else 5522981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 553d382aafbSBarry Smith #endif 554d382aafbSBarry Smith 555d382aafbSBarry Smith /*MC 556503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 557d382aafbSBarry Smith 558eca87e8dSBarry Smith Synopsis: 559f2ba6396SBarry Smith #include "petscsys.h" 560eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 561eca87e8dSBarry Smith 562eca87e8dSBarry Smith Not Collective 563eca87e8dSBarry Smith 564d382aafbSBarry Smith Input Parameter: 565d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 566d382aafbSBarry Smith . t1 - type of first memory elements 567d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 568d382aafbSBarry Smith . t2 - type of second memory elements 569d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 570d382aafbSBarry Smith - t3 - type of third memory elements 571d382aafbSBarry Smith 572d382aafbSBarry Smith Output Parameter: 573d382aafbSBarry Smith + r1 - memory allocated in first chunk 574d382aafbSBarry Smith . r2 - memory allocated in second chunk 575d382aafbSBarry Smith - r3 - memory allocated in third chunk 576d382aafbSBarry Smith 577d382aafbSBarry Smith Level: developer 578d382aafbSBarry Smith 579d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 580d382aafbSBarry Smith 581d382aafbSBarry Smith Concepts: memory allocation 582d382aafbSBarry Smith 583d382aafbSBarry Smith M*/ 584d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 585d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 586d382aafbSBarry Smith #else 5873b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 588d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 589d382aafbSBarry Smith #endif 590d382aafbSBarry Smith 591d382aafbSBarry Smith /*MC 592503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 593d382aafbSBarry Smith 594eca87e8dSBarry Smith Synopsis: 595f2ba6396SBarry Smith #include "petscsys.h" 596eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 597eca87e8dSBarry Smith 598eca87e8dSBarry Smith Not Collective 599eca87e8dSBarry Smith 600d382aafbSBarry Smith Input Parameter: 601d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 602d382aafbSBarry Smith . t1 - type of first memory elements 603d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 604d382aafbSBarry Smith . t2 - type of second memory elements 605d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 606d382aafbSBarry Smith . t3 - type of third memory elements 607d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 608d382aafbSBarry Smith - t4 - type of fourth memory elements 609d382aafbSBarry Smith 610d382aafbSBarry Smith Output Parameter: 611d382aafbSBarry Smith + r1 - memory allocated in first chunk 612d382aafbSBarry Smith . r2 - memory allocated in second chunk 613d382aafbSBarry Smith . r3 - memory allocated in third chunk 614d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 615d382aafbSBarry Smith 616d382aafbSBarry Smith Level: developer 617d382aafbSBarry Smith 618d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 619d382aafbSBarry Smith 620d382aafbSBarry Smith Concepts: memory allocation 621d382aafbSBarry Smith 622d382aafbSBarry Smith M*/ 623d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 624d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 625d382aafbSBarry Smith #else 626d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6273b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 628d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 629d382aafbSBarry Smith #endif 630d382aafbSBarry Smith 631d382aafbSBarry Smith /*MC 632503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 633d382aafbSBarry Smith 634eca87e8dSBarry Smith Synopsis: 635f2ba6396SBarry Smith #include "petscsys.h" 636eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 637eca87e8dSBarry Smith 638eca87e8dSBarry Smith Not Collective 639eca87e8dSBarry Smith 640d382aafbSBarry Smith Input Parameter: 641d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 642d382aafbSBarry Smith . t1 - type of first memory elements 643d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 644d382aafbSBarry Smith . t2 - type of second memory elements 645d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 646d382aafbSBarry Smith . t3 - type of third memory elements 647d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 648d382aafbSBarry Smith . t4 - type of fourth memory elements 649d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 650d382aafbSBarry Smith - t5 - type of fifth memory elements 651d382aafbSBarry Smith 652d382aafbSBarry Smith Output Parameter: 653d382aafbSBarry Smith + r1 - memory allocated in first chunk 654d382aafbSBarry Smith . r2 - memory allocated in second chunk 655d382aafbSBarry Smith . r3 - memory allocated in third chunk 656d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 657d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 658d382aafbSBarry Smith 659d382aafbSBarry Smith Level: developer 660d382aafbSBarry Smith 661d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 662d382aafbSBarry Smith 663d382aafbSBarry Smith Concepts: memory allocation 664d382aafbSBarry Smith 665d382aafbSBarry Smith M*/ 666d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 667d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 668d382aafbSBarry Smith #else 669d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 6703b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 671d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 672d382aafbSBarry Smith #endif 673d382aafbSBarry Smith 674d382aafbSBarry Smith 675d382aafbSBarry Smith /*MC 676503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 677d382aafbSBarry Smith 678eca87e8dSBarry Smith Synopsis: 679f2ba6396SBarry Smith #include "petscsys.h" 680eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 681eca87e8dSBarry Smith 682eca87e8dSBarry Smith Not Collective 683eca87e8dSBarry Smith 684d382aafbSBarry Smith Input Parameter: 685d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 686d382aafbSBarry Smith . t1 - type of first memory elements 687d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 688d382aafbSBarry Smith . t2 - type of second memory elements 689d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 690d382aafbSBarry Smith . t3 - type of third memory elements 691d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 692d382aafbSBarry Smith . t4 - type of fourth memory elements 693d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 694d382aafbSBarry Smith . t5 - type of fifth memory elements 695d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 696d382aafbSBarry Smith - t6 - type of sixth memory elements 697d382aafbSBarry Smith 698d382aafbSBarry Smith Output Parameter: 699d382aafbSBarry Smith + r1 - memory allocated in first chunk 700d382aafbSBarry Smith . r2 - memory allocated in second chunk 701d382aafbSBarry Smith . r3 - memory allocated in third chunk 702d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 703d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 704d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 705d382aafbSBarry Smith 706d382aafbSBarry Smith Level: developer 707d382aafbSBarry Smith 708d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 709d382aafbSBarry Smith 710d382aafbSBarry Smith Concepts: memory allocation 711d382aafbSBarry Smith 712d382aafbSBarry Smith M*/ 713d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 714d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 715d382aafbSBarry Smith #else 716d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7173b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 718d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 719d382aafbSBarry Smith #endif 720d382aafbSBarry Smith 721d382aafbSBarry Smith /*MC 722503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 723d382aafbSBarry Smith 724eca87e8dSBarry Smith Synopsis: 725f2ba6396SBarry Smith #include "petscsys.h" 726eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 727eca87e8dSBarry Smith 728eca87e8dSBarry Smith Not Collective 729eca87e8dSBarry Smith 730d382aafbSBarry Smith Input Parameter: 731d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 732d382aafbSBarry Smith . t1 - type of first memory elements 733d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 734d382aafbSBarry Smith . t2 - type of second memory elements 735d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 736d382aafbSBarry Smith . t3 - type of third memory elements 737d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 738d382aafbSBarry Smith . t4 - type of fourth memory elements 739d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 740d382aafbSBarry Smith . t5 - type of fifth memory elements 741d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 742d382aafbSBarry Smith . t6 - type of sixth memory elements 743d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 744d382aafbSBarry Smith - t7 - type of sixth memory elements 745d382aafbSBarry Smith 746d382aafbSBarry Smith Output Parameter: 747d382aafbSBarry Smith + r1 - memory allocated in first chunk 748d382aafbSBarry Smith . r2 - memory allocated in second chunk 749d382aafbSBarry Smith . r3 - memory allocated in third chunk 750d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 751d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 752d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 753eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 754d382aafbSBarry Smith 755d382aafbSBarry Smith Level: developer 756d382aafbSBarry Smith 757d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 758d382aafbSBarry Smith 759d382aafbSBarry Smith Concepts: memory allocation 760d382aafbSBarry Smith 761d382aafbSBarry Smith M*/ 762d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 763d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 764d382aafbSBarry Smith #else 765d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 7663b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 767d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 768d382aafbSBarry Smith #endif 769d382aafbSBarry Smith 770d382aafbSBarry Smith /*MC 771503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 772d382aafbSBarry Smith 773eca87e8dSBarry Smith Synopsis: 774f2ba6396SBarry Smith #include "petscsys.h" 775eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 776eca87e8dSBarry Smith 777eca87e8dSBarry Smith Not Collective 778eca87e8dSBarry Smith 779d382aafbSBarry Smith Input Parameter: 780d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 781d382aafbSBarry Smith 782d382aafbSBarry Smith Output Parameter: 783d382aafbSBarry Smith . result - memory allocated 784d382aafbSBarry Smith 785d382aafbSBarry Smith Level: beginner 786d382aafbSBarry Smith 787ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 788d382aafbSBarry Smith 789d382aafbSBarry Smith Concepts: memory allocation 790d382aafbSBarry Smith 791d382aafbSBarry Smith M*/ 792d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 793ad0619ddSBarry Smith 794ad0619ddSBarry Smith /*MC 795ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 796ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 797ad0619ddSBarry Smith 798ad0619ddSBarry Smith Synopsis: 799f2ba6396SBarry Smith #include "petscsys.h" 800ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 801ad0619ddSBarry Smith 802ad0619ddSBarry Smith Not Collective 803ad0619ddSBarry Smith 804ad0619ddSBarry Smith Input Parameter: 805ad0619ddSBarry Smith + obj - object memory is logged to 806ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 807ad0619ddSBarry Smith 808ad0619ddSBarry Smith Output Parameter: 809ad0619ddSBarry Smith . result - memory allocated 810ad0619ddSBarry Smith 811ad0619ddSBarry Smith Level: developer 812ad0619ddSBarry Smith 813ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 814ad0619ddSBarry Smith 815ad0619ddSBarry Smith Concepts: memory allocation 816ad0619ddSBarry Smith 817ad0619ddSBarry Smith M*/ 818d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 819d382aafbSBarry Smith 820d382aafbSBarry Smith /*MC 821d382aafbSBarry Smith PetscFree - Frees memory 822d382aafbSBarry Smith 823eca87e8dSBarry Smith Synopsis: 824f2ba6396SBarry Smith #include "petscsys.h" 825eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 826eca87e8dSBarry Smith 827eca87e8dSBarry Smith Not Collective 828eca87e8dSBarry Smith 829d382aafbSBarry Smith Input Parameter: 830d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 831d382aafbSBarry Smith 832d382aafbSBarry Smith Level: beginner 833d382aafbSBarry Smith 834d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 835d382aafbSBarry Smith 836d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 837d382aafbSBarry Smith 838d382aafbSBarry Smith Concepts: memory allocation 839d382aafbSBarry Smith 840d382aafbSBarry Smith M*/ 84112537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 842d382aafbSBarry Smith 843d382aafbSBarry Smith /*MC 844d382aafbSBarry Smith PetscFreeVoid - Frees memory 845d382aafbSBarry Smith 846d382aafbSBarry Smith Synopsis: 847f2ba6396SBarry Smith #include "petscsys.h" 848d382aafbSBarry Smith void PetscFreeVoid(void *memory) 849d382aafbSBarry Smith 850eca87e8dSBarry Smith Not Collective 851eca87e8dSBarry Smith 852eca87e8dSBarry Smith Input Parameter: 853eca87e8dSBarry Smith . memory - memory to free 854eca87e8dSBarry Smith 855d382aafbSBarry Smith Level: beginner 856d382aafbSBarry Smith 857d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 858d382aafbSBarry Smith 859d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 860d382aafbSBarry Smith 861d382aafbSBarry Smith Concepts: memory allocation 862d382aafbSBarry Smith 863d382aafbSBarry Smith M*/ 8642714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 865d382aafbSBarry Smith 866d382aafbSBarry Smith 867d382aafbSBarry Smith /*MC 868d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 869d382aafbSBarry Smith 870eca87e8dSBarry Smith Synopsis: 871f2ba6396SBarry Smith #include "petscsys.h" 872eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 873eca87e8dSBarry Smith 874eca87e8dSBarry Smith Not Collective 875eca87e8dSBarry Smith 876d382aafbSBarry Smith Input Parameter: 877d382aafbSBarry Smith + memory1 - memory to free 878d382aafbSBarry Smith - memory2 - 2nd memory to free 879d382aafbSBarry Smith 880d382aafbSBarry Smith Level: developer 881d382aafbSBarry Smith 882d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 883d382aafbSBarry Smith 884d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 885d382aafbSBarry Smith 886d382aafbSBarry Smith Concepts: memory allocation 887d382aafbSBarry Smith 888d382aafbSBarry Smith M*/ 889d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 890d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 891d382aafbSBarry Smith #else 89281dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 893d382aafbSBarry Smith #endif 894d382aafbSBarry Smith 895d382aafbSBarry Smith /*MC 896d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 897d382aafbSBarry Smith 898eca87e8dSBarry Smith Synopsis: 899f2ba6396SBarry Smith #include "petscsys.h" 900eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 901eca87e8dSBarry Smith 902eca87e8dSBarry Smith Not Collective 903eca87e8dSBarry Smith 904d382aafbSBarry Smith Input Parameter: 905d382aafbSBarry Smith + memory1 - memory to free 906d382aafbSBarry Smith . memory2 - 2nd memory to free 907d382aafbSBarry Smith - memory3 - 3rd memory to free 908d382aafbSBarry Smith 909d382aafbSBarry Smith Level: developer 910d382aafbSBarry Smith 911d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 912d382aafbSBarry Smith 913d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 914d382aafbSBarry Smith 915d382aafbSBarry Smith Concepts: memory allocation 916d382aafbSBarry Smith 917d382aafbSBarry Smith M*/ 918d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 919d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 920d382aafbSBarry Smith #else 92181dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 922d382aafbSBarry Smith #endif 923d382aafbSBarry Smith 924d382aafbSBarry Smith /*MC 925d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 926d382aafbSBarry Smith 927eca87e8dSBarry Smith Synopsis: 928f2ba6396SBarry Smith #include "petscsys.h" 929eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 930eca87e8dSBarry Smith 931eca87e8dSBarry Smith Not Collective 932eca87e8dSBarry Smith 933d382aafbSBarry Smith Input Parameter: 934d382aafbSBarry Smith + m1 - memory to free 935d382aafbSBarry Smith . m2 - 2nd memory to free 936d382aafbSBarry Smith . m3 - 3rd memory to free 937d382aafbSBarry Smith - m4 - 4th memory to free 938d382aafbSBarry Smith 939d382aafbSBarry Smith Level: developer 940d382aafbSBarry Smith 941d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 942d382aafbSBarry Smith 943d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 944d382aafbSBarry Smith 945d382aafbSBarry Smith Concepts: memory allocation 946d382aafbSBarry Smith 947d382aafbSBarry Smith M*/ 948d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 949d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 950d382aafbSBarry Smith #else 95181dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 952d382aafbSBarry Smith #endif 953d382aafbSBarry Smith 954d382aafbSBarry Smith /*MC 955d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 956d382aafbSBarry Smith 957eca87e8dSBarry Smith Synopsis: 958f2ba6396SBarry Smith #include "petscsys.h" 959eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 960eca87e8dSBarry Smith 961eca87e8dSBarry Smith Not Collective 962eca87e8dSBarry Smith 963d382aafbSBarry Smith Input Parameter: 964d382aafbSBarry Smith + m1 - memory to free 965d382aafbSBarry Smith . m2 - 2nd memory to free 966d382aafbSBarry Smith . m3 - 3rd memory to free 967d382aafbSBarry Smith . m4 - 4th memory to free 968d382aafbSBarry Smith - m5 - 5th memory to free 969d382aafbSBarry Smith 970d382aafbSBarry Smith Level: developer 971d382aafbSBarry Smith 972d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 973d382aafbSBarry Smith 974d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 975d382aafbSBarry Smith 976d382aafbSBarry Smith Concepts: memory allocation 977d382aafbSBarry Smith 978d382aafbSBarry Smith M*/ 979d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 980d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 981d382aafbSBarry Smith #else 98281dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 983d382aafbSBarry Smith #endif 984d382aafbSBarry Smith 985d382aafbSBarry Smith 986d382aafbSBarry Smith /*MC 987d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 988d382aafbSBarry Smith 989eca87e8dSBarry Smith Synopsis: 990f2ba6396SBarry Smith #include "petscsys.h" 991eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 992eca87e8dSBarry Smith 993eca87e8dSBarry Smith Not Collective 994eca87e8dSBarry Smith 995d382aafbSBarry Smith Input Parameter: 996d382aafbSBarry Smith + m1 - memory to free 997d382aafbSBarry Smith . m2 - 2nd memory to free 998d382aafbSBarry Smith . m3 - 3rd memory to free 999d382aafbSBarry Smith . m4 - 4th memory to free 1000d382aafbSBarry Smith . m5 - 5th memory to free 1001d382aafbSBarry Smith - m6 - 6th memory to free 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith Level: developer 1005d382aafbSBarry Smith 1006d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1009d382aafbSBarry Smith 1010d382aafbSBarry Smith Concepts: memory allocation 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith M*/ 1013d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1014d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1015d382aafbSBarry Smith #else 101681dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1017d382aafbSBarry Smith #endif 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith /*MC 1020d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1021d382aafbSBarry Smith 1022eca87e8dSBarry Smith Synopsis: 1023f2ba6396SBarry Smith #include "petscsys.h" 1024eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1025eca87e8dSBarry Smith 1026eca87e8dSBarry Smith Not Collective 1027eca87e8dSBarry Smith 1028d382aafbSBarry Smith Input Parameter: 1029d382aafbSBarry Smith + m1 - memory to free 1030d382aafbSBarry Smith . m2 - 2nd memory to free 1031d382aafbSBarry Smith . m3 - 3rd memory to free 1032d382aafbSBarry Smith . m4 - 4th memory to free 1033d382aafbSBarry Smith . m5 - 5th memory to free 1034d382aafbSBarry Smith . m6 - 6th memory to free 1035d382aafbSBarry Smith - m7 - 7th memory to free 1036d382aafbSBarry Smith 1037d382aafbSBarry Smith 1038d382aafbSBarry Smith Level: developer 1039d382aafbSBarry Smith 1040d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1043d382aafbSBarry Smith PetscMalloc7() 1044d382aafbSBarry Smith 1045d382aafbSBarry Smith Concepts: memory allocation 1046d382aafbSBarry Smith 1047d382aafbSBarry Smith M*/ 1048d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1049d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1050d382aafbSBarry Smith #else 105181dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1052d382aafbSBarry Smith #endif 1053d382aafbSBarry Smith 1054014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 1055014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 1056014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 1057014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1058d382aafbSBarry Smith 1059d382aafbSBarry Smith /* 1060a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1061a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1062a5057860SBarry Smith timing etc. 1063a5057860SBarry Smith */ 1064a5057860SBarry Smith typedef double PetscLogDouble; 1065a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1066a5057860SBarry Smith 1067a5057860SBarry Smith /* 106866d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1069d382aafbSBarry Smith */ 1070014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1071014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1072014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1073014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1074014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 1075014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 1076014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1077574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1078014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1079d382aafbSBarry Smith 1080d382aafbSBarry Smith /*E 1081d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith Level: beginner 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1088d382aafbSBarry Smith PetscDataTypeGetSize() 1089d382aafbSBarry Smith 1090d382aafbSBarry Smith E*/ 1091d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 10922d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 10936a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1094d382aafbSBarry Smith 1095d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1096d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1097d382aafbSBarry Smith #else 1098ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1099d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 110059a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 110159a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1102d382aafbSBarry Smith #else 1103d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1104d382aafbSBarry Smith #endif 1105d382aafbSBarry Smith #endif 1106ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1107d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 110859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 110959a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1110d382aafbSBarry Smith #else 1111d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1112d382aafbSBarry Smith #endif 1113d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1114d382aafbSBarry Smith 1115014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1116014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1118d382aafbSBarry Smith 1119d382aafbSBarry Smith /* 1120d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1121d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1122d382aafbSBarry Smith functionality and/or error checking. 1123d382aafbSBarry Smith */ 1124014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1125014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1126014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1127014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1128d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1129014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1130014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1131014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1132014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1133014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1134014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1135014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1136014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1137014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1138014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 11402f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1141014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1142014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1143014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1144014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11452c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1146014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1147014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 114847340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 11496fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1150014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1151d382aafbSBarry Smith 1152573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1153573b0fb4SBarry Smith 1154d382aafbSBarry Smith /*S 1155d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1156d382aafbSBarry Smith 1157d382aafbSBarry Smith Level: intermediate 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1160d382aafbSBarry Smith S*/ 1161d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1162d382aafbSBarry Smith 1163014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1164014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1166d382aafbSBarry Smith 1167d382aafbSBarry Smith /* 1168d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1169d382aafbSBarry Smith */ 1170014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 11717c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1172014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 11732414b3c7SJed Brown #else 11742414b3c7SJed Brown #define MPIU_SUM MPI_SUM 11752414b3c7SJed Brown #endif 11762414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1177014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1178014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1179d9822059SBarry Smith #else 1180d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1181d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1182d9822059SBarry Smith #endif 1183014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1184d382aafbSBarry Smith 1185014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1186014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1187eb3f98d2SBarry Smith 1188d382aafbSBarry Smith /*S 1189d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1190d382aafbSBarry Smith 1191d382aafbSBarry Smith Level: beginner 1192d382aafbSBarry Smith 11932981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1194d382aafbSBarry Smith 11951890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1196d382aafbSBarry Smith S*/ 1197d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith /*S 1200140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1201d382aafbSBarry Smith by string name 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith Level: advanced 1204d382aafbSBarry Smith 1205140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1206d382aafbSBarry Smith S*/ 1207140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith /*E 1210d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith Level: beginner 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1217d382aafbSBarry Smith 1218d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1225d382aafbSBarry Smith E*/ 1226d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1227639ff905SBarry Smith /* 1228639ff905SBarry Smith Defines PETSc error handling. 1229639ff905SBarry Smith */ 1230639ff905SBarry Smith #include <petscerror.h> 1231d382aafbSBarry Smith 12320700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1233014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1234014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1235014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1236d382aafbSBarry Smith 1237d382aafbSBarry Smith /* 1238d382aafbSBarry Smith Routines that get memory usage information from the OS 1239d382aafbSBarry Smith */ 1240014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1241014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1242014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1243d382aafbSBarry Smith 1244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1245014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTime(PetscLogDouble*); 1246014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 1247014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith /* 1250d382aafbSBarry Smith Initialization of PETSc 1251d382aafbSBarry Smith */ 1252014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1253014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1254014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1255014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1256014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1257014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1258014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1259014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1260014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1261014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1262d382aafbSBarry Smith 1263014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1264014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(const char[]); 1265d382aafbSBarry Smith 1266014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD; 1267014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1268014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1269014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void); 1270014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1271014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1272014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1274d382aafbSBarry Smith 1275014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1276014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1277014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith /* 1281d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 12822981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1283d382aafbSBarry Smith */ 1284638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1285638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1286638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1287d382aafbSBarry Smith 1288d382aafbSBarry Smith /* 1289d382aafbSBarry Smith Functions that can act on any PETSc object. 1290d382aafbSBarry Smith */ 1291014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1292014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1293014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1294014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1295014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1296014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1297014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1299014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1300014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1301014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1303014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1308014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 131000de8ff0SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],const char[],void (*)(void)); 131100de8ff0SBarry Smith #define PetscObjectComposeFunction(a,b,c,d) PetscObjectComposeFunction_Private(a,b,c,(PetscVoidFunction)(d)) 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1319d382aafbSBarry Smith 1320665c2dedSJed Brown #include <petscviewertypes.h> 1321639ff905SBarry Smith #include <petscoptions.h> 1322639ff905SBarry Smith 1323639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1324639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 1325639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 1326639ff905SBarry Smith 1327d382aafbSBarry Smith /*MC 1328d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1329d382aafbSBarry Smith 1330eca87e8dSBarry Smith Synopsis: 1331f2ba6396SBarry Smith #include "petscsys.h" 1332eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1333eca87e8dSBarry Smith 1334ad4df100SBarry Smith Logically Collective on PetscObject 1335d382aafbSBarry Smith 1336d382aafbSBarry Smith Input Parameters: 1337d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1338d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1339d382aafbSBarry Smith . name - name associated with the child function 1340d382aafbSBarry Smith . fname - name of the function 13410298fd71SBarry Smith - ptr - function pointer (or NULL if using dynamic libraries) 1342d382aafbSBarry Smith 1343d382aafbSBarry Smith Level: advanced 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith 1346d382aafbSBarry Smith Notes: 13470298fd71SBarry Smith To remove a registered routine, pass in a NULL rname and fnc(). 1348d382aafbSBarry Smith 1349d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1350d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1351d382aafbSBarry Smith 1352d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 135320de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1354d382aafbSBarry Smith enabled. 1355d382aafbSBarry Smith 1356d382aafbSBarry Smith Concepts: objects^composing functions 1357d382aafbSBarry Smith Concepts: composing functions 1358d382aafbSBarry Smith Concepts: functions^querying 1359d382aafbSBarry Smith Concepts: objects^querying 1360d382aafbSBarry Smith Concepts: querying objects 1361d382aafbSBarry Smith 1362d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1363d382aafbSBarry Smith M*/ 1364d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1365d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1366d382aafbSBarry Smith #else 136700de8ff0SBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,d) 1368d382aafbSBarry Smith #endif 1369d382aafbSBarry Smith 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAMSPublish(PetscObject); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectUnPublish(PetscObject); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1385d382aafbSBarry Smith 13867d5d4d99SBarry Smith typedef void* PetscDLHandle; 1387e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 1388e4d177b5SBarry Smith extern PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 13897d5d4d99SBarry Smith extern PetscErrorCode PetscDLClose(PetscDLHandle *); 13907d5d4d99SBarry Smith extern PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 13917d5d4d99SBarry Smith 1392d382aafbSBarry Smith 13935fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1394a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 13955fe58b6fSBarry Smith #endif 13967eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1397a64a8e02SBarry Smith 1398d382aafbSBarry Smith /*S 1399140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1400d382aafbSBarry Smith 14011d0fab5eSBarry Smith Level: developer 1402d382aafbSBarry Smith 14031d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14041d0fab5eSBarry Smith 1405140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1406d382aafbSBarry Smith S*/ 1407140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1408d382aafbSBarry Smith 1409140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1410140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1411140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1412140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1413140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1414140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1415d382aafbSBarry Smith 1416d382aafbSBarry Smith /* 1417503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1418d382aafbSBarry Smith link libraries that will be loaded as needed. 1419d382aafbSBarry Smith */ 1420140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListAdd(MPI_Comm,PetscFunctionList*,const char[],const char[],void (*)(void)); 1421140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 1422140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListFind(MPI_Comm,PetscFunctionList,const char[],PetscBool,void (**)(void)); 1423140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1424d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1425140e18c1SBarry Smith #define PetscFunctionListAddDynamic(mc,a,b,p,c) PetscFunctionListAdd(mc,a,b,p,0) 1426d382aafbSBarry Smith #else 1427140e18c1SBarry Smith #define PetscFunctionListAddDynamic(mc,a,b,p,c) PetscFunctionListAdd(mc,a,b,p,(void (*)(void))c) 1428d382aafbSBarry Smith #endif 1429140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1430140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1431140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListConcat(const char [],const char [],char []); 1432140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1433d382aafbSBarry Smith 1434d382aafbSBarry Smith /*S 1435d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1436d382aafbSBarry Smith 1437d382aafbSBarry Smith Level: advanced 1438d382aafbSBarry Smith 143920de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1440d382aafbSBarry Smith 1441d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1442d382aafbSBarry Smith S*/ 1443d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1444014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1452d382aafbSBarry Smith 1453d382aafbSBarry Smith /* 1454d382aafbSBarry Smith Useful utility routines 1455d382aafbSBarry Smith */ 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1462d382aafbSBarry Smith 1463503cfb0cSBarry Smith /* 1464ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1465503cfb0cSBarry Smith 1466503cfb0cSBarry Smith Notes: This is useful in cases like 1467503cfb0cSBarry Smith $ int *a; 1468ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1469ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1470503cfb0cSBarry Smith */ 1471d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1472503cfb0cSBarry Smith 1473cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1474cae2f346SBarry Smith # include <valgrind/valgrind.h> 1475cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1476cae2f346SBarry Smith #else 1477cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1478cae2f346SBarry Smith #endif 1479cae2f346SBarry Smith 1480238ccf28SShri Abhyankar 1481d382aafbSBarry Smith /*MC 1482d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1483d382aafbSBarry Smith 1484d382aafbSBarry Smith Synopsis: 1485f2ba6396SBarry Smith #include "petscsys.h" 1486d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1487d382aafbSBarry Smith 1488eca87e8dSBarry Smith Not Collective 1489eca87e8dSBarry Smith 1490d382aafbSBarry Smith Input Parameters: 1491d382aafbSBarry Smith . format - the usual printf() format string 1492d382aafbSBarry Smith 1493d382aafbSBarry Smith Level: developer 1494d382aafbSBarry Smith 1495d382aafbSBarry Smith Fortran Note: 1496d382aafbSBarry Smith This routine is not supported in Fortran. 1497d382aafbSBarry Smith 1498d382aafbSBarry Smith Concepts: help messages^printing 1499d382aafbSBarry Smith Concepts: printing^help messages 1500d382aafbSBarry Smith 1501d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1502d382aafbSBarry Smith M*/ 1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1504d382aafbSBarry Smith 1505fcfd50ebSBarry Smith /* 1506fcfd50ebSBarry Smith Defines PETSc profiling. 1507fcfd50ebSBarry Smith */ 15082c8e378dSBarry Smith #include <petsclog.h> 1509fcfd50ebSBarry Smith 1510fcfd50ebSBarry Smith /* 1511fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1512fcfd50ebSBarry Smith */ 1513fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1514014dd563SJed Brown PETSC_EXTERN PetscBool PetscAMSPublishAll; 1515fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1516fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1517fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1518fcfd50ebSBarry Smith #else 1519fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1520fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1521fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1522fcfd50ebSBarry Smith #endif 1523fcfd50ebSBarry Smith 1524fcfd50ebSBarry Smith /* 1525fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1526fcfd50ebSBarry Smith */ 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1534fcfd50ebSBarry Smith 1535fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1536fcfd50ebSBarry Smith #include <stdarg.h> 1537014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1540fcfd50ebSBarry Smith 1541fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1543fcfd50ebSBarry Smith #endif 1544fcfd50ebSBarry Smith 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1548d382aafbSBarry Smith 1549d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1550014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1551784ad74dSJed Brown PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,PetscInt*); 1552d382aafbSBarry Smith #endif 1553d382aafbSBarry Smith 1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1555014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1558014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1561d382aafbSBarry Smith 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1563d382aafbSBarry Smith 1564d382aafbSBarry Smith /*S 1565d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1566d382aafbSBarry Smith 1567d382aafbSBarry Smith Level: advanced 1568d382aafbSBarry Smith 1569d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1570d382aafbSBarry Smith S*/ 1571014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1572d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1578d382aafbSBarry Smith 1579d382aafbSBarry Smith /* 1580d382aafbSBarry Smith For use in debuggers 1581d382aafbSBarry Smith */ 1582014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1583014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1587d382aafbSBarry Smith 1588a663daf8SBarry Smith #include <stddef.h> 1589d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1590d382aafbSBarry Smith #include <memory.h> 1591d382aafbSBarry Smith #endif 1592d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1593d382aafbSBarry Smith #include <stdlib.h> 1594d382aafbSBarry Smith #endif 15956c7e564aSBarry Smith 15964a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1597d382aafbSBarry Smith #include <xmmintrin.h> 1598d382aafbSBarry Smith #endif 1599d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1600d382aafbSBarry Smith #include <stdint.h> 1601d382aafbSBarry Smith #endif 1602d382aafbSBarry Smith 1603fcfd50ebSBarry Smith #undef __FUNCT__ 1604fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1605d382aafbSBarry Smith /*@C 1606d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1607d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1608d382aafbSBarry Smith PetscMemmove() in that case. 1609d382aafbSBarry Smith 1610d382aafbSBarry Smith Not Collective 1611d382aafbSBarry Smith 1612d382aafbSBarry Smith Input Parameters: 1613d382aafbSBarry Smith + b - pointer to initial memory space 1614d382aafbSBarry Smith - n - length (in bytes) of space to copy 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith Output Parameter: 1617d382aafbSBarry Smith . a - pointer to copy space 1618d382aafbSBarry Smith 1619d382aafbSBarry Smith Level: intermediate 1620d382aafbSBarry Smith 1621d382aafbSBarry Smith Compile Option: 1622d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1623d382aafbSBarry Smith for memory copies on double precision values. 1624d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1625d382aafbSBarry Smith for memory copies on double precision values. 1626d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1627d382aafbSBarry Smith for memory copies on double precision values. 1628d382aafbSBarry Smith 1629d382aafbSBarry Smith Note: 1630d382aafbSBarry Smith This routine is analogous to memcpy(). 1631d382aafbSBarry Smith 1632503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1633503cfb0cSBarry Smith 1634d382aafbSBarry Smith Concepts: memory^copying 1635d382aafbSBarry Smith Concepts: copying^memory 1636d382aafbSBarry Smith 1637d382aafbSBarry Smith .seealso: PetscMemmove() 1638d382aafbSBarry Smith 1639d382aafbSBarry Smith @*/ 16407087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1641d382aafbSBarry Smith { 1642d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1643d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1644d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1645a7e36092SMatthew G Knepley PetscFunctionBegin; 1646e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1647e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1648a7e36092SMatthew G Knepley #else 1649d382aafbSBarry Smith PetscFunctionBegin; 1650a7e36092SMatthew G Knepley #endif 1651d382aafbSBarry Smith if (a != b) { 1652d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1653e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1654d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1655d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1656d382aafbSBarry Smith #endif 1657d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1658d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1659d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1660d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1661c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1662c5df96a5SBarry Smith PetscErrorCode ierr; 1663c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 1664a83cb05cSBarry Smith PetscStackCall("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1665d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1666d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1667d382aafbSBarry Smith #else 1668d382aafbSBarry Smith size_t i; 1669d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1670d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1671d382aafbSBarry Smith #endif 1672d382aafbSBarry Smith } else { 1673d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1674d382aafbSBarry Smith } 1675d382aafbSBarry Smith #else 1676d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1677d382aafbSBarry Smith #endif 1678d382aafbSBarry Smith } 1679d382aafbSBarry Smith PetscFunctionReturn(0); 1680d382aafbSBarry Smith } 1681d382aafbSBarry Smith 1682d382aafbSBarry Smith /*@C 1683d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1684d382aafbSBarry Smith 1685d382aafbSBarry Smith Not Collective 1686d382aafbSBarry Smith 1687d382aafbSBarry Smith Input Parameters: 1688d382aafbSBarry Smith + a - pointer to beginning memory location 1689d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1690d382aafbSBarry Smith 1691d382aafbSBarry Smith Level: intermediate 1692d382aafbSBarry Smith 1693d382aafbSBarry Smith Compile Option: 1694d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1695d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1696d382aafbSBarry Smith 1697503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1698503cfb0cSBarry Smith 1699d382aafbSBarry Smith Concepts: memory^zeroing 1700d382aafbSBarry Smith Concepts: zeroing^memory 1701d382aafbSBarry Smith 1702d382aafbSBarry Smith .seealso: PetscMemcpy() 1703d382aafbSBarry Smith @*/ 17047087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1705d382aafbSBarry Smith { 1706d382aafbSBarry Smith if (n > 0) { 1707d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1708e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1709d382aafbSBarry Smith #endif 1710d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1711d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1712d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1713d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1714d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1715d382aafbSBarry Smith } else { 1716d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1717d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1718d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1719d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1720d382aafbSBarry Smith } else { 1721d382aafbSBarry Smith #endif 1722d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1723d382aafbSBarry Smith bzero((char *)a,n); 1724d382aafbSBarry Smith #else 1725d382aafbSBarry Smith memset((char*)a,0,n); 1726d382aafbSBarry Smith #endif 1727d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1728d382aafbSBarry Smith } 1729d382aafbSBarry Smith #endif 1730d382aafbSBarry Smith } 1731d382aafbSBarry Smith return 0; 1732d382aafbSBarry Smith } 1733d382aafbSBarry Smith 1734d382aafbSBarry Smith /*MC 1735d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1736d382aafbSBarry Smith 1737eca87e8dSBarry Smith Synopsis: 1738f2ba6396SBarry Smith #include "petscsys.h" 1739eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1740eca87e8dSBarry Smith 1741d382aafbSBarry Smith Not Collective 1742d382aafbSBarry Smith 1743d382aafbSBarry Smith Input Parameters: 1744d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1745d382aafbSBarry Smith . n - number of elements to fetch 1746d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 174750d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1748d382aafbSBarry Smith 1749d382aafbSBarry Smith Level: developer 1750d382aafbSBarry Smith 1751d382aafbSBarry Smith Notes: 1752d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1753d382aafbSBarry Smith 175450d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 175550d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 175650d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 175763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 175863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 175963cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1760d382aafbSBarry Smith 1761d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1762d382aafbSBarry Smith address). 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith Concepts: memory 1765d382aafbSBarry Smith M*/ 1766d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1767d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1768d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1769d382aafbSBarry Smith } while (0) 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith /* 1772d382aafbSBarry Smith Determine if some of the kernel computation routines use 1773d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1774d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1775d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1776e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1777d382aafbSBarry Smith */ 1778d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1779d382aafbSBarry Smith 1780d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1781d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1782d382aafbSBarry Smith #endif 1783d382aafbSBarry Smith 17845a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 17855a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1786d382aafbSBarry Smith #endif 1787d382aafbSBarry Smith 1788d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1789d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1790d382aafbSBarry Smith #endif 1791d382aafbSBarry Smith 1792d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1793d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1794d382aafbSBarry Smith #endif 1795d382aafbSBarry Smith 1796d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1797d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1798d382aafbSBarry Smith #endif 1799d382aafbSBarry Smith 1800d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1801d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1802d382aafbSBarry Smith #endif 1803d382aafbSBarry Smith 1804d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1805d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1806d382aafbSBarry Smith #endif 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1809d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1810d382aafbSBarry Smith #endif 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1813d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1814d382aafbSBarry Smith #endif 1815d382aafbSBarry Smith 1816d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1817d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1818d382aafbSBarry Smith #endif 1819d382aafbSBarry Smith 1820d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1821d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1822d382aafbSBarry Smith #endif 1823d382aafbSBarry Smith 1824d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1825d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1826d382aafbSBarry Smith #endif 1827d382aafbSBarry Smith 1828d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1829d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1830d382aafbSBarry Smith #endif 1831d382aafbSBarry Smith 1832d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1833d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1834d382aafbSBarry Smith #endif 1835d382aafbSBarry Smith 1836d382aafbSBarry Smith #endif 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith /* 1839d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1840d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1841d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1842d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1843d382aafbSBarry Smith ugly extern "C" {} wrappers. 1844d382aafbSBarry Smith */ 1845d382aafbSBarry Smith #if defined(__cplusplus) 1846014dd563SJed Brown #define PETSC_EXTERN_C extern "C" PETSC_VISIBILITY_PUBLIC 184721f66b81SJed Brown #define PETSC_INTERN_C extern "C" PETSC_VISIBILITY_INTERNAL 1848d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1849d382aafbSBarry Smith #define EXTERN_C_END } 1850d382aafbSBarry Smith #else 1851014dd563SJed Brown #define PETSC_EXTERN_C PETSC_EXTERN 185221f66b81SJed Brown #define PETSC_INTERN_C PETSC_INTERN 1853d382aafbSBarry Smith #define EXTERN_C_BEGIN 1854d382aafbSBarry Smith #define EXTERN_C_END 1855d382aafbSBarry Smith #endif 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1858d382aafbSBarry Smith 1859d382aafbSBarry Smith /*MC 1860d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1861d382aafbSBarry Smith communication 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith Level: beginner 1864d382aafbSBarry Smith 1865d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1866d382aafbSBarry Smith 1867d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1868d382aafbSBarry Smith M*/ 1869d382aafbSBarry Smith 1870d382aafbSBarry Smith /*MC 1871d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1872d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1873d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith 1876d382aafbSBarry Smith Level: beginner 1877d382aafbSBarry Smith 1878d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1879d382aafbSBarry Smith M*/ 1880d382aafbSBarry Smith 1881d382aafbSBarry Smith /*MC 18828619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 18838619c96cSJed Brown 18848619c96cSJed Brown Synopsis: 18858619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 18868619c96cSJed Brown #include <petscsys.h> 18878619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 18888619c96cSJed Brown 18898619c96cSJed Brown Level: beginner 18908619c96cSJed Brown 18918619c96cSJed Brown Note: 18928619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 18938619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 18948619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 18958619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 18968619c96cSJed Brown 18978619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 18988619c96cSJed Brown M*/ 18998619c96cSJed Brown 19008619c96cSJed Brown /*MC 1901d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith Level: beginner 1904d382aafbSBarry Smith 1905d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1906d382aafbSBarry Smith M*/ 1907d382aafbSBarry Smith 1908d382aafbSBarry Smith /*MC 1909d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1910d382aafbSBarry Smith Level: beginner 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 1913d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 1916d382aafbSBarry Smith M*/ 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith /*MC 1919d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 1920d382aafbSBarry Smith 1921d382aafbSBarry Smith Level: beginner 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 1924d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1925d382aafbSBarry Smith 1926d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 1927d382aafbSBarry Smith M*/ 1928d382aafbSBarry Smith 1929d382aafbSBarry Smith /*MC 1930d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 1931d382aafbSBarry Smith 1932d382aafbSBarry Smith Level: beginner 1933d382aafbSBarry Smith 1934d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 1935d382aafbSBarry Smith pass this value 1936d382aafbSBarry Smith 1937d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 1938d382aafbSBarry Smith M*/ 1939d382aafbSBarry Smith 1940d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1941d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 1942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1944d382aafbSBarry Smith #else 1945d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 1946d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 1947d382aafbSBarry Smith #endif 1948d382aafbSBarry Smith #endif 1949d382aafbSBarry Smith 1950d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 1951d382aafbSBarry Smith 1952d382aafbSBarry Smith /* Limit MPI to 32-bits */ 1953d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 1954d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 1955d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 1956d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 1957d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 1958d382aafbSBarry Smith 1959c5df96a5SBarry Smith #undef __FUNCT__ 1960c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 1961c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 1962c5df96a5SBarry Smith { 1963c5df96a5SBarry Smith PetscFunctionBegin; 1964c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 1965c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 1966c5df96a5SBarry Smith #endif 1967c5df96a5SBarry Smith *b = (PetscBLASInt)(a); 1968c5df96a5SBarry Smith PetscFunctionReturn(0); 1969c5df96a5SBarry Smith } 1970c5df96a5SBarry Smith 19714dc2109aSBarry Smith #undef __FUNCT__ 19724dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 19734dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 19744dc2109aSBarry Smith { 19754dc2109aSBarry Smith PetscFunctionBegin; 19764dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 19774dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 19784dc2109aSBarry Smith #endif 19794dc2109aSBarry Smith *b = (PetscMPIInt)(a); 19804dc2109aSBarry Smith PetscFunctionReturn(0); 19814dc2109aSBarry Smith } 19824dc2109aSBarry Smith 1983c5df96a5SBarry Smith 1984d382aafbSBarry Smith /* 19852981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 1986d382aafbSBarry Smith */ 1987d382aafbSBarry Smith #if defined(hz) 1988d382aafbSBarry Smith #undef hz 1989d382aafbSBarry Smith #endif 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 1992d382aafbSBarry Smith 1993d382aafbSBarry Smith 1994d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 1995d382aafbSBarry Smith #include <limits.h> 1996d382aafbSBarry Smith #endif 1997d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 1998d382aafbSBarry Smith #include <sys/param.h> 1999d382aafbSBarry Smith #endif 2000d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2001d382aafbSBarry Smith #include <sys/types.h> 2002d382aafbSBarry Smith #endif 2003d382aafbSBarry Smith #if defined(MAXPATHLEN) 2004d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2005d382aafbSBarry Smith #elif defined(MAX_PATH) 2006d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2007d382aafbSBarry Smith #elif defined(_MAX_PATH) 2008d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2009d382aafbSBarry Smith #else 2010d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2011d382aafbSBarry Smith #endif 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith /* Special support for C++ */ 2014*2c280183SJed Brown #if defined(PETSC_CLANGUAGE_CXX) && defined(__cplusplus) 20152c8e378dSBarry Smith #include <petscsys.hh> 20162c8e378dSBarry Smith #endif 20176c7e564aSBarry Smith 2018d382aafbSBarry Smith /*MC 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2021d382aafbSBarry Smith 2022d382aafbSBarry Smith $ 1) classic Fortran 77 style 2023d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2024d382aafbSBarry Smith $ XXX variablename 2025d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2026d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2027d382aafbSBarry Smith $ 2028d382aafbSBarry Smith $ 2) classic Fortran 90 style 2029d1716517SSatish Balay $#include "finclude/petscXXX.h" 2030d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2031d382aafbSBarry Smith $ XXX variablename 2032d382aafbSBarry Smith $ 2033d382aafbSBarry Smith $ 3) Using Fortran modules 2034d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2035d382aafbSBarry Smith $ use petscXXXX 2036d382aafbSBarry Smith $ XXX variablename 2037d382aafbSBarry Smith $ 2038d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2039d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2040d382aafbSBarry Smith $ use petscXXXX 2041d382aafbSBarry Smith $ type(XXX) variablename 2042e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2043d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2044d382aafbSBarry Smith 2045d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2046d382aafbSBarry Smith 2047d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2048d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2049d382aafbSBarry Smith $ integer variablename 2050d382aafbSBarry Smith $ 2051d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2052d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2053d382aafbSBarry Smith 2054d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2055d382aafbSBarry Smith for only a few PETSc functions. 2056d382aafbSBarry Smith 2057d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2058d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2059d382aafbSBarry Smith you cannot have something like 2060d382aafbSBarry Smith $ PetscInt row,col 2061d382aafbSBarry Smith $ PetscScalar val 2062d382aafbSBarry Smith $ ... 2063d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2064d382aafbSBarry Smith You must instead have 2065d382aafbSBarry Smith $ PetscInt row(1),col(1) 2066d382aafbSBarry Smith $ PetscScalar val(1) 2067d382aafbSBarry Smith $ ... 2068d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith 2071d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2072d382aafbSBarry Smith 2073d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2074d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2077d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2078d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2079d382aafbSBarry Smith 2080d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2081e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2082d382aafbSBarry Smith 2083d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2084d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2085d382aafbSBarry Smith 2086d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2087d382aafbSBarry Smith automatically by "make allfortranstubs". 2088d382aafbSBarry Smith 2089e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2090d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2091d382aafbSBarry Smith include their predecessors 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith Level: beginner 2094d382aafbSBarry Smith 2095d382aafbSBarry Smith M*/ 2096d382aafbSBarry Smith 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 210327710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2104d382aafbSBarry Smith 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 210760e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 211217d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 211317d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2115014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2116014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2118014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2119014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2120014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2121014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2122d382aafbSBarry Smith 2123014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2124014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2125d382aafbSBarry Smith 212676bdecfbSBarry Smith /*J 2127d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2128d382aafbSBarry Smith with an optional dynamic library name, for example 2129d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith Level: beginner 2132d382aafbSBarry Smith 2133e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2134d382aafbSBarry Smith with the option --download-sprng 2135d382aafbSBarry Smith 2136d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 213776bdecfbSBarry Smith J*/ 213819fd82e9SBarry Smith typedef const char* PetscRandomType; 2139d382aafbSBarry Smith #define PETSCRAND "rand" 2140d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2141d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2142d382aafbSBarry Smith 2143d382aafbSBarry Smith /* Logging support */ 2144014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2145d382aafbSBarry Smith 2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(const char[]); 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith /*S 2149d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith Level: intermediate 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith Concepts: random numbers 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2156d382aafbSBarry Smith S*/ 2157d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2158d382aafbSBarry Smith 2159d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2160140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2161014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2162d382aafbSBarry Smith 2163014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(const char []); 2164014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 2165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterDestroy(void); 216619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2167014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 216819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 21696d187b91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,const char[]); 2170014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2171d382aafbSBarry Smith 2172d382aafbSBarry Smith /*MC 2173d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2174d382aafbSBarry Smith 2175d382aafbSBarry Smith Synopsis: 2176f2ba6396SBarry Smith #include "petscsys.h" 21771890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2178d382aafbSBarry Smith 2179d382aafbSBarry Smith Not Collective 2180d382aafbSBarry Smith 2181d382aafbSBarry Smith Input Parameters: 2182d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2183d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2184d382aafbSBarry Smith . func_name - The name of routine to create method context 2185d382aafbSBarry Smith - create_func - The creation routine itself 2186d382aafbSBarry Smith 2187d382aafbSBarry Smith Notes: 2188d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2189d382aafbSBarry Smith 2190d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith Sample usage: 2193d382aafbSBarry Smith .vb 2194d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2195d382aafbSBarry Smith .ve 2196d382aafbSBarry Smith 2197d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2198d382aafbSBarry Smith .vb 2199d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2200d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2201d382aafbSBarry Smith .ve 2202d382aafbSBarry Smith or at runtime via the option 2203d382aafbSBarry Smith .vb 2204d382aafbSBarry Smith -random_type my_random_name 2205d382aafbSBarry Smith .ve 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2208d382aafbSBarry Smith 2209d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2210d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2211d382aafbSBarry Smith 2212d382aafbSBarry Smith Level: advanced 2213d382aafbSBarry Smith 2214d382aafbSBarry Smith .keywords: PetscRandom, register 2215d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2216d382aafbSBarry Smith M*/ 2217d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2218d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2219d382aafbSBarry Smith #else 2220d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2221d382aafbSBarry Smith #endif 2222d382aafbSBarry Smith 2223014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2224014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2225014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2226014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2227014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2228014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2229014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2230014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2231014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2232d382aafbSBarry Smith 2233014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2235014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2236014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2237014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2238014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2240d382aafbSBarry Smith 2241014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2242014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2245014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2246014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2247014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2248014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2249014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2250014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2251014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2252014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpenSocket(char*,int,int*); 2253014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2254d382aafbSBarry Smith 2255d382aafbSBarry Smith /* 2256d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2257d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2258d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2259d382aafbSBarry Smith PetscBinarySeek(). 2260d382aafbSBarry Smith */ 2261d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2262d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2263d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2264d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2265d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2266d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2267d382aafbSBarry Smith 2268d382aafbSBarry Smith /*E 2269d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2270d382aafbSBarry Smith 2271d382aafbSBarry Smith Level: advanced 2272d382aafbSBarry Smith 2273d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2274d382aafbSBarry Smith E*/ 2275d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2276014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2277014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2279d382aafbSBarry Smith 2280014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2281014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2282014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2283014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2284014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2285014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2286d382aafbSBarry Smith 2287014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2288014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2289014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2290014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2291014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2292f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2293d382aafbSBarry Smith 22946145cd65SJed Brown /*E 22956145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 22966145cd65SJed Brown 22976145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 22986145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 22996145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 23006145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 23016145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 23026145cd65SJed Brown 23036145cd65SJed Brown Level: developer 23046145cd65SJed Brown 23056145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 23066145cd65SJed Brown E*/ 23076145cd65SJed Brown typedef enum { 23086145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 23096145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 23106145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 23116145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 23126145cd65SJed Brown } PetscBuildTwoSidedType; 23136145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 23146145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 23156145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 23166145cd65SJed Brown 2317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2318d382aafbSBarry Smith 2319d382aafbSBarry Smith /*E 2320d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith Level: beginner 2323d382aafbSBarry Smith 2324d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2325d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2326d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2327d382aafbSBarry Smith E*/ 23286fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2329d382aafbSBarry Smith 2330d382aafbSBarry Smith /*MC 2331d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2332d382aafbSBarry Smith 2333d382aafbSBarry Smith Level: beginner 2334d382aafbSBarry Smith 2335d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2336eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2337eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2338d382aafbSBarry Smith 2339d382aafbSBarry Smith M*/ 2340d382aafbSBarry Smith 2341d382aafbSBarry Smith /*MC 2342d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2343d382aafbSBarry Smith value into that location 2344d382aafbSBarry Smith 2345d382aafbSBarry Smith Level: beginner 2346d382aafbSBarry Smith 2347d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2348eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2349eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2350d382aafbSBarry Smith 2351d382aafbSBarry Smith M*/ 2352d382aafbSBarry Smith 2353d382aafbSBarry Smith /*MC 2354d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2355d382aafbSBarry Smith 2356d382aafbSBarry Smith Level: beginner 2357d382aafbSBarry Smith 2358d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2359d382aafbSBarry Smith 2360d382aafbSBarry Smith M*/ 2361d382aafbSBarry Smith 2362ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2363ce94432eSBarry Smith 2364d382aafbSBarry Smith /*S 2365d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2366d382aafbSBarry Smith 2367d382aafbSBarry Smith Level: advanced 2368d382aafbSBarry Smith 2369d382aafbSBarry Smith Concepts: communicator, create 2370d382aafbSBarry Smith S*/ 2371d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2372d382aafbSBarry Smith 2373d382aafbSBarry Smith struct _n_PetscSubcomm { 2374d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2375d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2376d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2377d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2378d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2379d382aafbSBarry Smith }; 2380d382aafbSBarry Smith 2381638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 23826a6fc655SJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 2383638faf0bSHong Zhang 2384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 2388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2389d382aafbSBarry Smith 23909e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 23919e03d832SJed Brown #undef __FUNCT__ 23929e03d832SJed Brown #define __FUNCT__ "User provided function" 23939e03d832SJed Brown 2394d382aafbSBarry Smith #endif 2395