1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240fab38c73SJed Brown 241d382aafbSBarry Smith /*MC 242d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2433b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 244d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 245d382aafbSBarry Smith 246d382aafbSBarry Smith Level: intermediate 247d382aafbSBarry Smith 248d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 249d382aafbSBarry Smith M*/ 250fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 251fab38c73SJed Brown typedef int64_t Petsc64bitInt; 252fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 253f505b413SSatish Balay typedef long long Petsc64bitInt; 254f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 255236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 256236ed0a3SSatish Balay #else 257f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 258236ed0a3SSatish Balay #endif 259d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 260236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 26141860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 26268db2e82SFande Kong # define MPIU_INT MPI_LONG_LONG_INT 263fab38c73SJed Brown # else 264d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 265fab38c73SJed Brown # endif 266d382aafbSBarry Smith #else 267d382aafbSBarry Smith typedef int PetscInt; 268d382aafbSBarry Smith #define MPIU_INT MPI_INT 269d382aafbSBarry Smith #endif 270e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 271e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 272e56f5c9eSBarry Smith #else 273e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 274e56f5c9eSBarry Smith #endif 275236ed0a3SSatish Balay 276d382aafbSBarry Smith 277702bc34aSSatish Balay /*MC 278702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 279702bc34aSSatish Balay 280702bc34aSSatish Balay Level: intermediate 281702bc34aSSatish Balay 282702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 283702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 284702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 285702bc34aSSatish Balay 286c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2872981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 288702bc34aSSatish Balay 2892981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 290702bc34aSSatish Balay if you run ./configure with the option 291702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2922981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2932981ebdbSBarry Smith 2942981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2952981ebdbSBarry Smith 2962981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 297702bc34aSSatish Balay 298702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 299702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 300702bc34aSSatish Balay 3011cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 302702bc34aSSatish Balay 303702bc34aSSatish Balay M*/ 304702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 305702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 306702bc34aSSatish Balay #else 307702bc34aSSatish Balay typedef int PetscBLASInt; 308702bc34aSSatish Balay #endif 309702bc34aSSatish Balay 31058b60935SBarry Smith /*EC 31158b60935SBarry Smith 3122981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 31358b60935SBarry Smith 31458b60935SBarry Smith Level: advanced 31558b60935SBarry Smith 31658b60935SBarry Smith .seealso: PetscObjectSetPrecision() 31758b60935SBarry Smith E*/ 31858b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 319014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 32058b60935SBarry Smith 321503cfb0cSBarry Smith /* 322503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 323503cfb0cSBarry Smith */ 324d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 325adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 326d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 327adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 328d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 329adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 330d382aafbSBarry Smith #else 331d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 332d382aafbSBarry Smith #endif 333d382aafbSBarry Smith 334d382aafbSBarry Smith /* 335d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 336d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 337d382aafbSBarry Smith */ 338014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 339d382aafbSBarry Smith 340d382aafbSBarry Smith /* 341d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 342d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 343d382aafbSBarry Smith */ 344014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 345d382aafbSBarry Smith 346d382aafbSBarry Smith /*MC 347d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 348d382aafbSBarry Smith 349d382aafbSBarry Smith Synopsis: 350aaa7dc30SBarry Smith #include <petscsys.h> 351ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 352d382aafbSBarry Smith 353eca87e8dSBarry Smith Not Collective 354eca87e8dSBarry Smith 355d382aafbSBarry Smith Input Parameters: 356d382aafbSBarry Smith . cond - condition or expression 357d382aafbSBarry Smith 358d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 359d382aafbSBarry Smith branch is unlikely. 360d382aafbSBarry Smith 361d382aafbSBarry Smith Level: advanced 362d382aafbSBarry Smith 363d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 364d382aafbSBarry Smith M*/ 365d382aafbSBarry Smith 366d382aafbSBarry Smith /*MC 367d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 368d382aafbSBarry Smith 369d382aafbSBarry Smith Synopsis: 370aaa7dc30SBarry Smith #include <petscsys.h> 371ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 372d382aafbSBarry Smith 373eca87e8dSBarry Smith Not Collective 374eca87e8dSBarry Smith 375d382aafbSBarry Smith Input Parameters: 376d382aafbSBarry Smith . cond - condition or expression 377d382aafbSBarry Smith 378d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 379d382aafbSBarry Smith branch is likely. 380d382aafbSBarry Smith 381d382aafbSBarry Smith Level: advanced 382d382aafbSBarry Smith 383d382aafbSBarry Smith .seealso: PetscUnlikely() 384d382aafbSBarry Smith M*/ 385d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 386d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 387d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 388d382aafbSBarry Smith #else 389cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 390cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 391d382aafbSBarry Smith #endif 392d382aafbSBarry Smith 393d382aafbSBarry Smith /* 394d382aafbSBarry Smith Declare extern C stuff after including external header files 395d382aafbSBarry Smith */ 396d382aafbSBarry Smith 397d382aafbSBarry Smith 398d382aafbSBarry Smith /* 399d382aafbSBarry Smith Basic PETSc constants 400d382aafbSBarry Smith */ 401d382aafbSBarry Smith 402d382aafbSBarry Smith /*E 403ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 404d382aafbSBarry Smith 405d382aafbSBarry Smith Level: beginner 406d382aafbSBarry Smith 407ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 40834e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 40934e82e7dSBarry Smith 4101cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 411d382aafbSBarry Smith E*/ 412ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4136a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4145a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 41570b3c8c7SBarry Smith 4168b49ba18SBarry Smith /* 4178b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4188b49ba18SBarry Smith */ 4198b49ba18SBarry Smith #include <petscmath.h> 4208b49ba18SBarry Smith 42170b3c8c7SBarry Smith /*E 42270b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 42370b3c8c7SBarry Smith 42470b3c8c7SBarry Smith Level: beginner 42570b3c8c7SBarry Smith 42670b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42770b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 42870b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 42970b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43070b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 43170b3c8c7SBarry Smith 43270b3c8c7SBarry Smith E*/ 43370b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4346a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 435d382aafbSBarry Smith 436d382aafbSBarry Smith /*MC 437ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 438d382aafbSBarry Smith 439d382aafbSBarry Smith Level: beginner 440d382aafbSBarry Smith 441d382aafbSBarry Smith Note: Zero integer 442d382aafbSBarry Smith 443ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 444d382aafbSBarry Smith M*/ 445d382aafbSBarry Smith 446d382aafbSBarry Smith /*MC 447ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 448d382aafbSBarry Smith 449d382aafbSBarry Smith Level: beginner 450d382aafbSBarry Smith 451d382aafbSBarry Smith Note: Nonzero integer 452d382aafbSBarry Smith 453ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 454d382aafbSBarry Smith M*/ 455d382aafbSBarry Smith 456d382aafbSBarry Smith /*MC 4570298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 458d382aafbSBarry Smith 459d382aafbSBarry Smith Level: beginner 460d382aafbSBarry Smith 461d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 462d382aafbSBarry Smith some default 463d382aafbSBarry Smith 464d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 465503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 466d382aafbSBarry Smith 467d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 468d382aafbSBarry Smith 469d382aafbSBarry Smith M*/ 4703bcbec90SJed Brown #define PETSC_NULL NULL 471d382aafbSBarry Smith 472d382aafbSBarry Smith /*MC 4730298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 474d382aafbSBarry Smith 475d382aafbSBarry Smith Level: beginner 476d382aafbSBarry Smith 477d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 478d382aafbSBarry Smith some default 479d382aafbSBarry Smith 480d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 481d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 482d382aafbSBarry Smith 483d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 484d382aafbSBarry Smith 485d382aafbSBarry Smith M*/ 4860298fd71SBarry Smith #define PETSC_IGNORE NULL 487d382aafbSBarry Smith 488d382aafbSBarry Smith /*MC 489557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 490557d4da8SBarry Smith where you wish PETSc to use the default. 491557d4da8SBarry Smith 492557d4da8SBarry Smith Level: beginner 493557d4da8SBarry Smith 494557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 495557d4da8SBarry Smith 496557d4da8SBarry Smith M*/ 497557d4da8SBarry Smith #define PETSC_DECIDE -1 498557d4da8SBarry Smith 499557d4da8SBarry Smith /*MC 500d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 501d382aafbSBarry Smith where you wish PETSc to compute the required value. 502d382aafbSBarry Smith 503d382aafbSBarry Smith Level: beginner 504d382aafbSBarry Smith 505557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 506557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 507557d4da8SBarry Smith 5080298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 509d382aafbSBarry Smith 510d382aafbSBarry Smith M*/ 511d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 512d382aafbSBarry Smith 513d382aafbSBarry Smith /*MC 514557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 515557d4da8SBarry Smith where you wish PETSc to use the default. 516557d4da8SBarry Smith 517557d4da8SBarry Smith Level: beginner 518557d4da8SBarry Smith 5192d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 520557d4da8SBarry Smith 5210298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 522557d4da8SBarry Smith 523557d4da8SBarry Smith M*/ 524557d4da8SBarry Smith #define PETSC_DEFAULT -2 525557d4da8SBarry Smith 526557d4da8SBarry Smith /*MC 527d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 528d382aafbSBarry Smith all the processs that PETSc knows about. 529d382aafbSBarry Smith 530d382aafbSBarry Smith Level: beginner 531d382aafbSBarry Smith 532d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 533d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 534d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 535a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 536a990b902SBarry Smith 537a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 538a990b902SBarry Smith is called because it may not have a valid value yet. 539d382aafbSBarry Smith 540d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 541d382aafbSBarry Smith 542d382aafbSBarry Smith M*/ 543014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 544d382aafbSBarry Smith 545d382aafbSBarry Smith /*MC 546503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 547d382aafbSBarry Smith 548d382aafbSBarry Smith Level: beginner 549d382aafbSBarry Smith 550a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 551a990b902SBarry Smith 552d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 553d382aafbSBarry Smith 554d382aafbSBarry Smith M*/ 555d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 556d382aafbSBarry Smith 557d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 558014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 559014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 560014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5614cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 562d382aafbSBarry Smith 563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 566d382aafbSBarry Smith 567d382aafbSBarry Smith /*MC 568854ce69bSBarry Smith PetscMalloc - Allocates memory, One should use PetscMalloc1() or PetscCalloc1() usually instead of this 569d382aafbSBarry Smith 570eca87e8dSBarry Smith Synopsis: 571aaa7dc30SBarry Smith #include <petscsys.h> 572eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 573eca87e8dSBarry Smith 574eca87e8dSBarry Smith Not Collective 575eca87e8dSBarry Smith 576d382aafbSBarry Smith Input Parameter: 577d382aafbSBarry Smith . m - number of bytes to allocate 578d382aafbSBarry Smith 579d382aafbSBarry Smith Output Parameter: 580d382aafbSBarry Smith . result - memory allocated 581d382aafbSBarry Smith 582d382aafbSBarry Smith Level: beginner 583d382aafbSBarry Smith 58449d7da52SJed Brown Notes: 58549d7da52SJed Brown Memory is always allocated at least double aligned 586d382aafbSBarry Smith 58749d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 588d382aafbSBarry Smith 589d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 590d382aafbSBarry Smith 591d382aafbSBarry Smith Concepts: memory allocation 592d382aafbSBarry Smith 593d382aafbSBarry Smith M*/ 59449d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 595d382aafbSBarry Smith 596d382aafbSBarry Smith /*MC 597503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 598d382aafbSBarry Smith 599d382aafbSBarry Smith Synopsis: 600aaa7dc30SBarry Smith #include <petscsys.h> 601d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 602d382aafbSBarry Smith 603eca87e8dSBarry Smith Not Collective 604eca87e8dSBarry Smith 605eca87e8dSBarry Smith Input Parameters: 606eca87e8dSBarry Smith . addr - address to align (any pointer type) 607eca87e8dSBarry Smith 608d382aafbSBarry Smith Level: developer 609d382aafbSBarry Smith 610d382aafbSBarry Smith .seealso: PetscMallocAlign() 611d382aafbSBarry Smith 612d382aafbSBarry Smith Concepts: memory allocation 613d382aafbSBarry Smith M*/ 614d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 615d382aafbSBarry Smith 616d382aafbSBarry Smith /*MC 617785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 618d382aafbSBarry Smith 619eca87e8dSBarry Smith Synopsis: 620aaa7dc30SBarry Smith #include <petscsys.h> 621785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 622785e854fSJed Brown 623785e854fSJed Brown Not Collective 624785e854fSJed Brown 625785e854fSJed Brown Input Parameter: 626785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 627785e854fSJed Brown 628785e854fSJed Brown Output Parameter: 629785e854fSJed Brown . r1 - memory allocated in first chunk 630785e854fSJed Brown 631785e854fSJed Brown Level: developer 632785e854fSJed Brown 6331795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 634785e854fSJed Brown 635785e854fSJed Brown Concepts: memory allocation 636785e854fSJed Brown 637785e854fSJed Brown M*/ 638f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 639785e854fSJed Brown 640785e854fSJed Brown /*MC 6411795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6421795a4d1SJed Brown 6431795a4d1SJed Brown Synopsis: 644aaa7dc30SBarry Smith #include <petscsys.h> 6451795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6461795a4d1SJed Brown 6471795a4d1SJed Brown Not Collective 6481795a4d1SJed Brown 6491795a4d1SJed Brown Input Parameter: 6501795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6511795a4d1SJed Brown 6521795a4d1SJed Brown Output Parameter: 6531795a4d1SJed Brown . r1 - memory allocated in first chunk 6541795a4d1SJed Brown 6551795a4d1SJed Brown Level: developer 6561795a4d1SJed Brown 6571795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6581795a4d1SJed Brown 6591795a4d1SJed Brown Concepts: memory allocation 6601795a4d1SJed Brown 6611795a4d1SJed Brown M*/ 6621795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6631795a4d1SJed Brown 6641795a4d1SJed Brown /*MC 665dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 666d382aafbSBarry Smith 667eca87e8dSBarry Smith Synopsis: 668aaa7dc30SBarry Smith #include <petscsys.h> 669dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 670eca87e8dSBarry Smith 671eca87e8dSBarry Smith Not Collective 672eca87e8dSBarry Smith 673d382aafbSBarry Smith Input Parameter: 674d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 675dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 676d382aafbSBarry Smith 677d382aafbSBarry Smith Output Parameter: 678d382aafbSBarry Smith + r1 - memory allocated in first chunk 679d382aafbSBarry Smith - r2 - memory allocated in second chunk 680d382aafbSBarry Smith 681d382aafbSBarry Smith Level: developer 682d382aafbSBarry Smith 6831795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 684d382aafbSBarry Smith 685d382aafbSBarry Smith Concepts: memory allocation 686d382aafbSBarry Smith 687d382aafbSBarry Smith M*/ 68820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6891d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 690d382aafbSBarry Smith #else 691ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 692ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6933589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 694d382aafbSBarry Smith #endif 695d382aafbSBarry Smith 696d382aafbSBarry Smith /*MC 6971795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 698d382aafbSBarry Smith 699eca87e8dSBarry Smith Synopsis: 700aaa7dc30SBarry Smith #include <petscsys.h> 7011795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 702eca87e8dSBarry Smith 703eca87e8dSBarry Smith Not Collective 704eca87e8dSBarry Smith 705d382aafbSBarry Smith Input Parameter: 706d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7071795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7081795a4d1SJed Brown 7091795a4d1SJed Brown Output Parameter: 7101795a4d1SJed Brown + r1 - memory allocated in first chunk 7111795a4d1SJed Brown - r2 - memory allocated in second chunk 7121795a4d1SJed Brown 7131795a4d1SJed Brown Level: developer 7141795a4d1SJed Brown 7151795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7161795a4d1SJed Brown 7171795a4d1SJed Brown Concepts: memory allocation 7181795a4d1SJed Brown M*/ 7191795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7201795a4d1SJed Brown 7211795a4d1SJed Brown /*MC 722dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 723d382aafbSBarry Smith 724d382aafbSBarry Smith Synopsis: 725aaa7dc30SBarry Smith #include <petscsys.h> 726dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 727d382aafbSBarry Smith 728d382aafbSBarry Smith Not Collective 729d382aafbSBarry Smith 730d382aafbSBarry Smith Input Parameter: 731d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 732d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 733dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 734d382aafbSBarry Smith 735d382aafbSBarry Smith Output Parameter: 736d382aafbSBarry Smith + r1 - memory allocated in first chunk 737d382aafbSBarry Smith . r2 - memory allocated in second chunk 738d382aafbSBarry Smith - r3 - memory allocated in third chunk 739d382aafbSBarry Smith 740d382aafbSBarry Smith Level: developer 741d382aafbSBarry Smith 7421795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 743d382aafbSBarry Smith 744d382aafbSBarry Smith Concepts: memory allocation 745d382aafbSBarry Smith 746d382aafbSBarry Smith M*/ 74720a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7481d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 749d382aafbSBarry Smith #else 750ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 751278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7523589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 753d382aafbSBarry Smith #endif 754d382aafbSBarry Smith 755d382aafbSBarry Smith /*MC 7561795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 757d382aafbSBarry Smith 758eca87e8dSBarry Smith Synopsis: 759aaa7dc30SBarry Smith #include <petscsys.h> 7601795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 761eca87e8dSBarry Smith 762eca87e8dSBarry Smith Not Collective 763eca87e8dSBarry Smith 764d382aafbSBarry Smith Input Parameter: 765d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 766d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7671795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7681795a4d1SJed Brown 7691795a4d1SJed Brown Output Parameter: 7701795a4d1SJed Brown + r1 - memory allocated in first chunk 7711795a4d1SJed Brown . r2 - memory allocated in second chunk 7721795a4d1SJed Brown - r3 - memory allocated in third chunk 7731795a4d1SJed Brown 7741795a4d1SJed Brown Level: developer 7751795a4d1SJed Brown 7761795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7771795a4d1SJed Brown 7781795a4d1SJed Brown Concepts: memory allocation 7791795a4d1SJed Brown M*/ 7801795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7811795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7821795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7831795a4d1SJed Brown 7841795a4d1SJed Brown /*MC 785dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 786d382aafbSBarry Smith 787d382aafbSBarry Smith Synopsis: 788aaa7dc30SBarry Smith #include <petscsys.h> 789dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 790d382aafbSBarry Smith 791d382aafbSBarry Smith Not Collective 792d382aafbSBarry Smith 793d382aafbSBarry Smith Input Parameter: 794d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 795d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 796d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 797dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 798d382aafbSBarry Smith 799d382aafbSBarry Smith Output Parameter: 800d382aafbSBarry Smith + r1 - memory allocated in first chunk 801d382aafbSBarry Smith . r2 - memory allocated in second chunk 802d382aafbSBarry Smith . r3 - memory allocated in third chunk 803d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 804d382aafbSBarry Smith 805d382aafbSBarry Smith Level: developer 806d382aafbSBarry Smith 8071795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 808d382aafbSBarry Smith 809d382aafbSBarry Smith Concepts: memory allocation 810d382aafbSBarry Smith 811d382aafbSBarry Smith M*/ 81220a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8131d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 814d382aafbSBarry Smith #else 815dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 816ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 817278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8183589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 819d382aafbSBarry Smith #endif 820d382aafbSBarry Smith 821d382aafbSBarry Smith /*MC 8221795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 823d382aafbSBarry Smith 824eca87e8dSBarry Smith Synopsis: 825aaa7dc30SBarry Smith #include <petscsys.h> 8261795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 827eca87e8dSBarry Smith 828eca87e8dSBarry Smith Not Collective 829eca87e8dSBarry Smith 830d382aafbSBarry Smith Input Parameter: 831d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 832d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 833d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8341795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8351795a4d1SJed Brown 8361795a4d1SJed Brown Output Parameter: 8371795a4d1SJed Brown + r1 - memory allocated in first chunk 8381795a4d1SJed Brown . r2 - memory allocated in second chunk 8391795a4d1SJed Brown . r3 - memory allocated in third chunk 8401795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8411795a4d1SJed Brown 8421795a4d1SJed Brown Level: developer 8431795a4d1SJed Brown 8441795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8451795a4d1SJed Brown 8461795a4d1SJed Brown Concepts: memory allocation 8471795a4d1SJed Brown 8481795a4d1SJed Brown M*/ 8491795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8501795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8511795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8521795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8531795a4d1SJed Brown 8541795a4d1SJed Brown /*MC 855dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 856d382aafbSBarry Smith 857d382aafbSBarry Smith Synopsis: 858aaa7dc30SBarry Smith #include <petscsys.h> 859dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 860d382aafbSBarry Smith 861d382aafbSBarry Smith Not Collective 862d382aafbSBarry Smith 863d382aafbSBarry Smith Input Parameter: 864d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 865d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 866d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 867d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 868dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 869d382aafbSBarry Smith 870d382aafbSBarry Smith Output Parameter: 871d382aafbSBarry Smith + r1 - memory allocated in first chunk 872d382aafbSBarry Smith . r2 - memory allocated in second chunk 873d382aafbSBarry Smith . r3 - memory allocated in third chunk 874d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 875d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 876d382aafbSBarry Smith 877d382aafbSBarry Smith Level: developer 878d382aafbSBarry Smith 8791795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 880d382aafbSBarry Smith 881d382aafbSBarry Smith Concepts: memory allocation 882d382aafbSBarry Smith 883d382aafbSBarry Smith M*/ 88420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8851d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 886d382aafbSBarry Smith #else 887dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 888ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 889278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8903589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 891d382aafbSBarry Smith #endif 892d382aafbSBarry Smith 893d382aafbSBarry Smith /*MC 8941795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 895d382aafbSBarry Smith 896eca87e8dSBarry Smith Synopsis: 897aaa7dc30SBarry Smith #include <petscsys.h> 8981795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 899eca87e8dSBarry Smith 900eca87e8dSBarry Smith Not Collective 901eca87e8dSBarry Smith 902d382aafbSBarry Smith Input Parameter: 903d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 904d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 905d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 906d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9071795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9081795a4d1SJed Brown 9091795a4d1SJed Brown Output Parameter: 9101795a4d1SJed Brown + r1 - memory allocated in first chunk 9111795a4d1SJed Brown . r2 - memory allocated in second chunk 9121795a4d1SJed Brown . r3 - memory allocated in third chunk 9131795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9141795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9151795a4d1SJed Brown 9161795a4d1SJed Brown Level: developer 9171795a4d1SJed Brown 9181795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9191795a4d1SJed Brown 9201795a4d1SJed Brown Concepts: memory allocation 9211795a4d1SJed Brown 9221795a4d1SJed Brown M*/ 9231795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9241795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9251795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9261795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 927d382aafbSBarry Smith 928d382aafbSBarry Smith /*MC 929dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 930d382aafbSBarry Smith 931d382aafbSBarry Smith Synopsis: 932aaa7dc30SBarry Smith #include <petscsys.h> 933dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 934d382aafbSBarry Smith 935d382aafbSBarry Smith Not Collective 936d382aafbSBarry Smith 937d382aafbSBarry Smith Input Parameter: 938d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 939d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 940d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 941d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 942d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 943dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 944d382aafbSBarry Smith 945d382aafbSBarry Smith Output Parameter: 946d382aafbSBarry Smith + r1 - memory allocated in first chunk 947d382aafbSBarry Smith . r2 - memory allocated in second chunk 948d382aafbSBarry Smith . r3 - memory allocated in third chunk 949d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 950d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 951d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 952d382aafbSBarry Smith 953d382aafbSBarry Smith Level: developer 954d382aafbSBarry Smith 9551795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 956d382aafbSBarry Smith 957d382aafbSBarry Smith Concepts: memory allocation 958d382aafbSBarry Smith 959d382aafbSBarry Smith M*/ 96020a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9611d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 962d382aafbSBarry Smith #else 963dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 964ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 965278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9663589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 967d382aafbSBarry Smith #endif 968d382aafbSBarry Smith 969d382aafbSBarry Smith /*MC 9701795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 971d382aafbSBarry Smith 972eca87e8dSBarry Smith Synopsis: 973aaa7dc30SBarry Smith #include <petscsys.h> 9741795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 975eca87e8dSBarry Smith 976eca87e8dSBarry Smith Not Collective 977eca87e8dSBarry Smith 978d382aafbSBarry Smith Input Parameter: 979d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 980d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 981d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 982d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 983d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9841795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9851795a4d1SJed Brown 9861795a4d1SJed Brown Output Parameter: 9871795a4d1SJed Brown + r1 - memory allocated in first chunk 9881795a4d1SJed Brown . r2 - memory allocated in second chunk 9891795a4d1SJed Brown . r3 - memory allocated in third chunk 9901795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9911795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9921795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9931795a4d1SJed Brown 9941795a4d1SJed Brown Level: developer 9951795a4d1SJed Brown 9961795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9971795a4d1SJed Brown 9981795a4d1SJed Brown Concepts: memory allocation 9991795a4d1SJed Brown M*/ 10001795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10011795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10021795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10031795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10041795a4d1SJed Brown 10051795a4d1SJed Brown /*MC 1006dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith Synopsis: 1009aaa7dc30SBarry Smith #include <petscsys.h> 1010dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith Not Collective 1013d382aafbSBarry Smith 1014d382aafbSBarry Smith Input Parameter: 1015d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1016d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1017d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1018d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1019d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1020d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1021dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1022d382aafbSBarry Smith 1023d382aafbSBarry Smith Output Parameter: 1024d382aafbSBarry Smith + r1 - memory allocated in first chunk 1025d382aafbSBarry Smith . r2 - memory allocated in second chunk 1026d382aafbSBarry Smith . r3 - memory allocated in third chunk 1027d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1028d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1029d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1030eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1031d382aafbSBarry Smith 1032d382aafbSBarry Smith Level: developer 1033d382aafbSBarry Smith 10341795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1035d382aafbSBarry Smith 1036d382aafbSBarry Smith Concepts: memory allocation 1037d382aafbSBarry Smith 1038d382aafbSBarry Smith M*/ 103920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10401d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1041d382aafbSBarry Smith #else 1042dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1043ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1044278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10453589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1046d382aafbSBarry Smith #endif 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith /*MC 10491795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10501795a4d1SJed Brown 10511795a4d1SJed Brown Synopsis: 1052aaa7dc30SBarry Smith #include <petscsys.h> 10531795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10541795a4d1SJed Brown 10551795a4d1SJed Brown Not Collective 10561795a4d1SJed Brown 10571795a4d1SJed Brown Input Parameter: 10581795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10591795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10601795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10611795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10621795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10631795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10641795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10651795a4d1SJed Brown 10661795a4d1SJed Brown Output Parameter: 10671795a4d1SJed Brown + r1 - memory allocated in first chunk 10681795a4d1SJed Brown . r2 - memory allocated in second chunk 10691795a4d1SJed Brown . r3 - memory allocated in third chunk 10701795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10711795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10721795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10731795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10741795a4d1SJed Brown 10751795a4d1SJed Brown Level: developer 10761795a4d1SJed Brown 10771795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10781795a4d1SJed Brown 10791795a4d1SJed Brown Concepts: memory allocation 10801795a4d1SJed Brown M*/ 10811795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10827ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10831795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10841795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10857ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10861795a4d1SJed Brown 10871795a4d1SJed Brown /*MC 1088503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1089d382aafbSBarry Smith 1090eca87e8dSBarry Smith Synopsis: 1091aaa7dc30SBarry Smith #include <petscsys.h> 1092b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1093eca87e8dSBarry Smith 1094eca87e8dSBarry Smith Not Collective 1095eca87e8dSBarry Smith 1096d382aafbSBarry Smith Output Parameter: 1097b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1098d382aafbSBarry Smith 1099d382aafbSBarry Smith Level: beginner 1100d382aafbSBarry Smith 1101ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1102d382aafbSBarry Smith 1103d382aafbSBarry Smith Concepts: memory allocation 1104d382aafbSBarry Smith 1105d382aafbSBarry Smith M*/ 1106b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1107ad0619ddSBarry Smith 1108ad0619ddSBarry Smith /*MC 1109b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1110ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1111ad0619ddSBarry Smith 1112ad0619ddSBarry Smith Synopsis: 1113aaa7dc30SBarry Smith #include <petscsys.h> 1114b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1115ad0619ddSBarry Smith 1116ad0619ddSBarry Smith Not Collective 1117ad0619ddSBarry Smith 1118ad0619ddSBarry Smith Input Parameter: 1119b00a9115SJed Brown . obj - object memory is logged to 1120ad0619ddSBarry Smith 1121ad0619ddSBarry Smith Output Parameter: 1122b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1123ad0619ddSBarry Smith 1124ad0619ddSBarry Smith Level: developer 1125ad0619ddSBarry Smith 1126ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1127ad0619ddSBarry Smith 1128ad0619ddSBarry Smith Concepts: memory allocation 1129ad0619ddSBarry Smith 1130ad0619ddSBarry Smith M*/ 1131d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith /*MC 1134d382aafbSBarry Smith PetscFree - Frees memory 1135d382aafbSBarry Smith 1136eca87e8dSBarry Smith Synopsis: 1137aaa7dc30SBarry Smith #include <petscsys.h> 1138eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1139eca87e8dSBarry Smith 1140eca87e8dSBarry Smith Not Collective 1141eca87e8dSBarry Smith 1142d382aafbSBarry Smith Input Parameter: 1143d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith Level: beginner 1146d382aafbSBarry Smith 114749d7da52SJed Brown Notes: 114849d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 114949d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1150d382aafbSBarry Smith 1151d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1152d382aafbSBarry Smith 1153d382aafbSBarry Smith Concepts: memory allocation 1154d382aafbSBarry Smith 1155d382aafbSBarry Smith M*/ 115649d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1157d382aafbSBarry Smith 1158d382aafbSBarry Smith /*MC 1159d382aafbSBarry Smith PetscFreeVoid - Frees memory 1160d382aafbSBarry Smith 1161d382aafbSBarry Smith Synopsis: 1162aaa7dc30SBarry Smith #include <petscsys.h> 1163d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1164d382aafbSBarry Smith 1165eca87e8dSBarry Smith Not Collective 1166eca87e8dSBarry Smith 1167eca87e8dSBarry Smith Input Parameter: 1168eca87e8dSBarry Smith . memory - memory to free 1169eca87e8dSBarry Smith 1170d382aafbSBarry Smith Level: beginner 1171d382aafbSBarry Smith 1172d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1173d382aafbSBarry Smith 1174d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1175d382aafbSBarry Smith 1176d382aafbSBarry Smith Concepts: memory allocation 1177d382aafbSBarry Smith 1178d382aafbSBarry Smith M*/ 1179efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1180d382aafbSBarry Smith 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith /*MC 1183d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1184d382aafbSBarry Smith 1185eca87e8dSBarry Smith Synopsis: 1186aaa7dc30SBarry Smith #include <petscsys.h> 1187eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1188eca87e8dSBarry Smith 1189eca87e8dSBarry Smith Not Collective 1190eca87e8dSBarry Smith 1191d382aafbSBarry Smith Input Parameter: 1192d382aafbSBarry Smith + memory1 - memory to free 1193d382aafbSBarry Smith - memory2 - 2nd memory to free 1194d382aafbSBarry Smith 1195d382aafbSBarry Smith Level: developer 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith Concepts: memory allocation 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith M*/ 1204b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1205d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1206d382aafbSBarry Smith #else 1207e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1208d382aafbSBarry Smith #endif 1209d382aafbSBarry Smith 1210d382aafbSBarry Smith /*MC 1211d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1212d382aafbSBarry Smith 1213eca87e8dSBarry Smith Synopsis: 1214aaa7dc30SBarry Smith #include <petscsys.h> 1215eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1216eca87e8dSBarry Smith 1217eca87e8dSBarry Smith Not Collective 1218eca87e8dSBarry Smith 1219d382aafbSBarry Smith Input Parameter: 1220d382aafbSBarry Smith + memory1 - memory to free 1221d382aafbSBarry Smith . memory2 - 2nd memory to free 1222d382aafbSBarry Smith - memory3 - 3rd memory to free 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith Level: developer 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith Concepts: memory allocation 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith M*/ 1233b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1234d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1235d382aafbSBarry Smith #else 1236e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1237d382aafbSBarry Smith #endif 1238d382aafbSBarry Smith 1239d382aafbSBarry Smith /*MC 1240d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1241d382aafbSBarry Smith 1242eca87e8dSBarry Smith Synopsis: 1243aaa7dc30SBarry Smith #include <petscsys.h> 1244eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1245eca87e8dSBarry Smith 1246eca87e8dSBarry Smith Not Collective 1247eca87e8dSBarry Smith 1248d382aafbSBarry Smith Input Parameter: 1249d382aafbSBarry Smith + m1 - memory to free 1250d382aafbSBarry Smith . m2 - 2nd memory to free 1251d382aafbSBarry Smith . m3 - 3rd memory to free 1252d382aafbSBarry Smith - m4 - 4th memory to free 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith Level: developer 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith Concepts: memory allocation 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith M*/ 1263b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1264d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1265d382aafbSBarry Smith #else 1266e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1267d382aafbSBarry Smith #endif 1268d382aafbSBarry Smith 1269d382aafbSBarry Smith /*MC 1270d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1271d382aafbSBarry Smith 1272eca87e8dSBarry Smith Synopsis: 1273aaa7dc30SBarry Smith #include <petscsys.h> 1274eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1275eca87e8dSBarry Smith 1276eca87e8dSBarry Smith Not Collective 1277eca87e8dSBarry Smith 1278d382aafbSBarry Smith Input Parameter: 1279d382aafbSBarry Smith + m1 - memory to free 1280d382aafbSBarry Smith . m2 - 2nd memory to free 1281d382aafbSBarry Smith . m3 - 3rd memory to free 1282d382aafbSBarry Smith . m4 - 4th memory to free 1283d382aafbSBarry Smith - m5 - 5th memory to free 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Level: developer 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1290d382aafbSBarry Smith 1291d382aafbSBarry Smith Concepts: memory allocation 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith M*/ 1294b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1295d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1296d382aafbSBarry Smith #else 1297e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1298e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1299d382aafbSBarry Smith #endif 1300d382aafbSBarry Smith 1301d382aafbSBarry Smith 1302d382aafbSBarry Smith /*MC 1303d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1304d382aafbSBarry Smith 1305eca87e8dSBarry Smith Synopsis: 1306aaa7dc30SBarry Smith #include <petscsys.h> 1307eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1308eca87e8dSBarry Smith 1309eca87e8dSBarry Smith Not Collective 1310eca87e8dSBarry Smith 1311d382aafbSBarry Smith Input Parameter: 1312d382aafbSBarry Smith + m1 - memory to free 1313d382aafbSBarry Smith . m2 - 2nd memory to free 1314d382aafbSBarry Smith . m3 - 3rd memory to free 1315d382aafbSBarry Smith . m4 - 4th memory to free 1316d382aafbSBarry Smith . m5 - 5th memory to free 1317d382aafbSBarry Smith - m6 - 6th memory to free 1318d382aafbSBarry Smith 1319d382aafbSBarry Smith 1320d382aafbSBarry Smith Level: developer 1321d382aafbSBarry Smith 1322d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1323d382aafbSBarry Smith 1324d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1325d382aafbSBarry Smith 1326d382aafbSBarry Smith Concepts: memory allocation 1327d382aafbSBarry Smith 1328d382aafbSBarry Smith M*/ 1329b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1330d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1331d382aafbSBarry Smith #else 1332e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1333e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1334e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1335d382aafbSBarry Smith #endif 1336d382aafbSBarry Smith 1337d382aafbSBarry Smith /*MC 1338d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1339d382aafbSBarry Smith 1340eca87e8dSBarry Smith Synopsis: 1341aaa7dc30SBarry Smith #include <petscsys.h> 1342eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1343eca87e8dSBarry Smith 1344eca87e8dSBarry Smith Not Collective 1345eca87e8dSBarry Smith 1346d382aafbSBarry Smith Input Parameter: 1347d382aafbSBarry Smith + m1 - memory to free 1348d382aafbSBarry Smith . m2 - 2nd memory to free 1349d382aafbSBarry Smith . m3 - 3rd memory to free 1350d382aafbSBarry Smith . m4 - 4th memory to free 1351d382aafbSBarry Smith . m5 - 5th memory to free 1352d382aafbSBarry Smith . m6 - 6th memory to free 1353d382aafbSBarry Smith - m7 - 7th memory to free 1354d382aafbSBarry Smith 1355d382aafbSBarry Smith 1356d382aafbSBarry Smith Level: developer 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1359d382aafbSBarry Smith 1360d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1361d382aafbSBarry Smith PetscMalloc7() 1362d382aafbSBarry Smith 1363d382aafbSBarry Smith Concepts: memory allocation 1364d382aafbSBarry Smith 1365d382aafbSBarry Smith M*/ 1366b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1367d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1368d382aafbSBarry Smith #else 1369e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1370e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 137106c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1372e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1373d382aafbSBarry Smith #endif 1374d382aafbSBarry Smith 1375efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1376efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1377efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1379d382aafbSBarry Smith 1380d382aafbSBarry Smith /* 1381a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1382a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1383a5057860SBarry Smith timing etc. 1384a5057860SBarry Smith */ 1385a5057860SBarry Smith typedef double PetscLogDouble; 1386a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1387a5057860SBarry Smith 1388a5057860SBarry Smith /* 138966d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1390d382aafbSBarry Smith */ 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13960acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1397efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1399574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1401d382aafbSBarry Smith 1402d382aafbSBarry Smith /*E 1403d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1404d382aafbSBarry Smith 1405d382aafbSBarry Smith Level: beginner 1406d382aafbSBarry Smith 1407d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1408d382aafbSBarry Smith 1409d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1410d382aafbSBarry Smith PetscDataTypeGetSize() 1411d382aafbSBarry Smith 1412d382aafbSBarry Smith E*/ 1413d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 14147e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 14156a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1416d382aafbSBarry Smith 1417d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1418d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1419d382aafbSBarry Smith #else 1420ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1421d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 142259a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142359a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1424d382aafbSBarry Smith #else 1425d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1426d382aafbSBarry Smith #endif 1427d382aafbSBarry Smith #endif 1428ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1429d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 143059a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 143159a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1432d382aafbSBarry Smith #else 1433d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1434d382aafbSBarry Smith #endif 1435d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1436d382aafbSBarry Smith 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14408e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1441d382aafbSBarry Smith 1442d382aafbSBarry Smith /* 1443d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1444d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1445d382aafbSBarry Smith functionality and/or error checking. 1446d382aafbSBarry Smith */ 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1451d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14632f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14682c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 147147340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14726fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14736991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14746991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1476d382aafbSBarry Smith 1477573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1478573b0fb4SBarry Smith 1479d382aafbSBarry Smith /*S 1480d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1481d382aafbSBarry Smith 1482d382aafbSBarry Smith Level: intermediate 1483d382aafbSBarry Smith 1484d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1485d382aafbSBarry Smith S*/ 1486d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1487d382aafbSBarry Smith 1488014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1489014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1491d382aafbSBarry Smith 1492a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1493a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1494a53986e1SJed Brown 1495d382aafbSBarry Smith /* 1496d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1497d382aafbSBarry Smith */ 1498014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14997c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1500014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15012414b3c7SJed Brown #else 15022414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15032414b3c7SJed Brown #endif 15042414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1505014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1506014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1507d9822059SBarry Smith #else 1508d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1509d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1510d9822059SBarry Smith #endif 1511014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1512d382aafbSBarry Smith 1513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1515eb3f98d2SBarry Smith 1516d382aafbSBarry Smith /*S 1517d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1518d382aafbSBarry Smith 1519d382aafbSBarry Smith Level: beginner 1520d382aafbSBarry Smith 15212981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1522d382aafbSBarry Smith 15232b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1524d382aafbSBarry Smith S*/ 1525d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1526d382aafbSBarry Smith 1527270bf2e7SJed Brown /*MC 1528127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1529127c8a3bSJed Brown 1530127c8a3bSJed Brown Level: developer 1531127c8a3bSJed Brown 1532127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1533127c8a3bSJed Brown 1534127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1535127c8a3bSJed Brown M*/ 1536127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1537127c8a3bSJed Brown 1538127c8a3bSJed Brown /*MC 1539270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1540270bf2e7SJed Brown 1541270bf2e7SJed Brown Level: developer 1542270bf2e7SJed Brown 1543270bf2e7SJed Brown Notes: 1544270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1545270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1546270bf2e7SJed Brown 15478dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1548270bf2e7SJed Brown M*/ 1549270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1550270bf2e7SJed Brown 1551d382aafbSBarry Smith /*S 1552140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1553d382aafbSBarry Smith by string name 1554d382aafbSBarry Smith 1555d382aafbSBarry Smith Level: advanced 1556d382aafbSBarry Smith 1557140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1558d382aafbSBarry Smith S*/ 1559140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1560d382aafbSBarry Smith 1561d382aafbSBarry Smith /*E 1562d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1563d382aafbSBarry Smith 1564d382aafbSBarry Smith Level: beginner 1565d382aafbSBarry Smith 15661cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15671cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15681cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15691cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15701cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1571d382aafbSBarry Smith 1572d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1573d382aafbSBarry Smith E*/ 1574d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1575d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1576d6a4318aSJed Brown 1577639ff905SBarry Smith /* 1578639ff905SBarry Smith Defines PETSc error handling. 1579639ff905SBarry Smith */ 1580639ff905SBarry Smith #include <petscerror.h> 1581d382aafbSBarry Smith 15820700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1583014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1584014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1586d382aafbSBarry Smith 1587d382aafbSBarry Smith /* 1588d382aafbSBarry Smith Routines that get memory usage information from the OS 1589d382aafbSBarry Smith */ 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1593b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1594d382aafbSBarry Smith 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1597d382aafbSBarry Smith 1598d382aafbSBarry Smith /* 1599d382aafbSBarry Smith Initialization of PETSc 1600d382aafbSBarry Smith */ 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1611d382aafbSBarry Smith 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1613607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1614d382aafbSBarry Smith 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1619d382aafbSBarry Smith 1620d382aafbSBarry Smith /* 1621d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16222981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1623d382aafbSBarry Smith */ 1624638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1625638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1626638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1627d382aafbSBarry Smith 1628d382aafbSBarry Smith /* 1629d382aafbSBarry Smith Functions that can act on any PETSc object. 1630d382aafbSBarry Smith */ 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1650bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1651bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1655d382aafbSBarry Smith 1656665c2dedSJed Brown #include <petscviewertypes.h> 1657639ff905SBarry Smith #include <petscoptions.h> 1658639ff905SBarry Smith 16590633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16600633abcbSJed Brown 1661639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1662c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1663dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1664639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16650005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16660005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1674685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1680d382aafbSBarry Smith 1681e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16827aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1683e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1684e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1685e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1686e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1687e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1688e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1689e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1690e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1691e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 169215681b3cSBarry Smith 1693ec7429eaSBarry Smith #else 16947aab2a10SBarry Smith #define PetscSAWsBlock() 0 1695e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1696e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1697e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1698e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1699e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1700e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1701e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1702e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1703e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 170415681b3cSBarry Smith 1705ec7429eaSBarry Smith #endif 1706b90c6cbeSBarry Smith 17077d5d4d99SBarry Smith typedef void* PetscDLHandle; 1708e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 170982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17127d5d4d99SBarry Smith 17135fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1714a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17155fe58b6fSBarry Smith #endif 17167eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1717a64a8e02SBarry Smith 1718d382aafbSBarry Smith /*S 1719140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1720d382aafbSBarry Smith 17211d0fab5eSBarry Smith Level: developer 1722d382aafbSBarry Smith 17231d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17241d0fab5eSBarry Smith 1725140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1726d382aafbSBarry Smith S*/ 1727140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1728d382aafbSBarry Smith 1729140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1730140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1731140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1732140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1733140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1734140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1735d382aafbSBarry Smith 1736d382aafbSBarry Smith /* 1737503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1738d382aafbSBarry Smith link libraries that will be loaded as needed. 1739d382aafbSBarry Smith */ 1740a240a19fSJed Brown 1741a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1742a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1743140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17441c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17451c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1746140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1747140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1748140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1749140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1750d382aafbSBarry Smith 1751d382aafbSBarry Smith /*S 1752d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1753d382aafbSBarry Smith 1754d382aafbSBarry Smith Level: advanced 1755d382aafbSBarry Smith 1756d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1757d382aafbSBarry Smith S*/ 1758d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1759014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1767d382aafbSBarry Smith 1768d382aafbSBarry Smith /* 1769d382aafbSBarry Smith Useful utility routines 1770d382aafbSBarry Smith */ 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1777d382aafbSBarry Smith 1778503cfb0cSBarry Smith /* 1779ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1780503cfb0cSBarry Smith 1781503cfb0cSBarry Smith Notes: This is useful in cases like 1782503cfb0cSBarry Smith $ int *a; 1783ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17841cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1785503cfb0cSBarry Smith */ 1786d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1787503cfb0cSBarry Smith 1788d382aafbSBarry Smith /*MC 1789d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1790d382aafbSBarry Smith 1791d382aafbSBarry Smith Synopsis: 1792aaa7dc30SBarry Smith #include <petscsys.h> 1793d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1794d382aafbSBarry Smith 1795eca87e8dSBarry Smith Not Collective 1796eca87e8dSBarry Smith 1797d382aafbSBarry Smith Input Parameters: 1798d382aafbSBarry Smith . format - the usual printf() format string 1799d382aafbSBarry Smith 1800d382aafbSBarry Smith Level: developer 1801d382aafbSBarry Smith 1802d382aafbSBarry Smith Fortran Note: 1803d382aafbSBarry Smith This routine is not supported in Fortran. 1804d382aafbSBarry Smith 1805d382aafbSBarry Smith Concepts: help messages^printing 1806d382aafbSBarry Smith Concepts: printing^help messages 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1809d382aafbSBarry Smith M*/ 1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1811d382aafbSBarry Smith 1812fcfd50ebSBarry Smith /* 1813fcfd50ebSBarry Smith Defines PETSc profiling. 1814fcfd50ebSBarry Smith */ 18152c8e378dSBarry Smith #include <petsclog.h> 1816fcfd50ebSBarry Smith 1817fcfd50ebSBarry Smith /* 1818fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1819fcfd50ebSBarry Smith */ 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1827fcfd50ebSBarry Smith 1828fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1829fcfd50ebSBarry Smith #include <stdarg.h> 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1833fcfd50ebSBarry Smith 1834fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1836fcfd50ebSBarry Smith #endif 1837fcfd50ebSBarry Smith 1838f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1839f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1840f1d7fe2eSBarry Smith #endif 1841f1d7fe2eSBarry Smith 1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1845d382aafbSBarry Smith 1846d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 184896a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 184974ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1850d382aafbSBarry Smith #endif 1851d382aafbSBarry Smith 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18540ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1857014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1859d382aafbSBarry Smith 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1861d382aafbSBarry Smith 1862d382aafbSBarry Smith /*S 1863d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1864d382aafbSBarry Smith 1865d382aafbSBarry Smith Level: advanced 1866d382aafbSBarry Smith 1867d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1868d382aafbSBarry Smith S*/ 1869014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1870d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1871014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1872014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1873014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1874014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1875014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1876d382aafbSBarry Smith 1877d382aafbSBarry Smith /* 1878d382aafbSBarry Smith For use in debuggers 1879d382aafbSBarry Smith */ 1880014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1881014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1882014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1883014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1884014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1885d382aafbSBarry Smith 1886a663daf8SBarry Smith #include <stddef.h> 1887a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1888d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1889d382aafbSBarry Smith #include <stdlib.h> 1890d382aafbSBarry Smith #endif 18916c7e564aSBarry Smith 18924a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1893d382aafbSBarry Smith #include <xmmintrin.h> 1894d382aafbSBarry Smith #endif 1895d382aafbSBarry Smith 1896fcfd50ebSBarry Smith #undef __FUNCT__ 1897fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1898d382aafbSBarry Smith /*@C 1899d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1900d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1901d382aafbSBarry Smith PetscMemmove() in that case. 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith Not Collective 1904d382aafbSBarry Smith 1905d382aafbSBarry Smith Input Parameters: 1906d382aafbSBarry Smith + b - pointer to initial memory space 1907d382aafbSBarry Smith - n - length (in bytes) of space to copy 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith Output Parameter: 1910d382aafbSBarry Smith . a - pointer to copy space 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith Level: intermediate 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith Compile Option: 1915d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1916d382aafbSBarry Smith for memory copies on double precision values. 1917d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1918d382aafbSBarry Smith for memory copies on double precision values. 1919d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1920d382aafbSBarry Smith for memory copies on double precision values. 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith Note: 1923d382aafbSBarry Smith This routine is analogous to memcpy(). 1924d382aafbSBarry Smith 1925503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1926503cfb0cSBarry Smith 1927d382aafbSBarry Smith Concepts: memory^copying 1928d382aafbSBarry Smith Concepts: copying^memory 1929d382aafbSBarry Smith 1930d382aafbSBarry Smith .seealso: PetscMemmove() 1931d382aafbSBarry Smith 1932d382aafbSBarry Smith @*/ 19337087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1934d382aafbSBarry Smith { 1935d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1936c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1937c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1938a7e36092SMatthew G Knepley PetscFunctionBegin; 1939e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1940e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1941a7e36092SMatthew G Knepley #else 1942d382aafbSBarry Smith PetscFunctionBegin; 1943a7e36092SMatthew G Knepley #endif 1944a47a537aSLisandro Dalcin if (a != b && n > 0) { 1945d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1946e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1947d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1948d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1951c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1952d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1953d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1954c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1955c5df96a5SBarry Smith PetscErrorCode ierr; 1956c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19578b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1958d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1959d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1960d382aafbSBarry Smith #else 1961d382aafbSBarry Smith size_t i; 1962d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1963d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1964d382aafbSBarry Smith #endif 1965d382aafbSBarry Smith } else { 1966d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1967d382aafbSBarry Smith } 1968d382aafbSBarry Smith #else 1969d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1970d382aafbSBarry Smith #endif 1971d382aafbSBarry Smith } 1972d382aafbSBarry Smith PetscFunctionReturn(0); 1973d382aafbSBarry Smith } 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith /*@C 1976d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1977d382aafbSBarry Smith 1978d382aafbSBarry Smith Not Collective 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith Input Parameters: 1981d382aafbSBarry Smith + a - pointer to beginning memory location 1982d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith Level: intermediate 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith Compile Option: 1987d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1988d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1989d382aafbSBarry Smith 1990503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1991503cfb0cSBarry Smith 1992d382aafbSBarry Smith Concepts: memory^zeroing 1993d382aafbSBarry Smith Concepts: zeroing^memory 1994d382aafbSBarry Smith 1995d382aafbSBarry Smith .seealso: PetscMemcpy() 1996d382aafbSBarry Smith @*/ 19977087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1998d382aafbSBarry Smith { 1999d382aafbSBarry Smith if (n > 0) { 2000d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2001e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2002d382aafbSBarry Smith #endif 2003d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2004d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2005d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2006d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2007d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2008d382aafbSBarry Smith } else { 2009d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2010d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2011d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2012d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2013d382aafbSBarry Smith } else { 2014d382aafbSBarry Smith #endif 2015d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2016d382aafbSBarry Smith bzero((char *)a,n); 2017d382aafbSBarry Smith #else 2018d382aafbSBarry Smith memset((char*)a,0,n); 2019d382aafbSBarry Smith #endif 2020d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2021d382aafbSBarry Smith } 2022d382aafbSBarry Smith #endif 2023d382aafbSBarry Smith } 2024d382aafbSBarry Smith return 0; 2025d382aafbSBarry Smith } 2026d382aafbSBarry Smith 2027d382aafbSBarry Smith /*MC 2028d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2029d382aafbSBarry Smith 2030eca87e8dSBarry Smith Synopsis: 2031aaa7dc30SBarry Smith #include <petscsys.h> 2032eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2033eca87e8dSBarry Smith 2034d382aafbSBarry Smith Not Collective 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith Input Parameters: 2037d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2038d382aafbSBarry Smith . n - number of elements to fetch 2039d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 204050d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2041d382aafbSBarry Smith 2042d382aafbSBarry Smith Level: developer 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith Notes: 2045d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2046d382aafbSBarry Smith 204750d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204850d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204950d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 205063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 205163cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 205263cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2053d382aafbSBarry Smith 2054d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2055d382aafbSBarry Smith address). 2056d382aafbSBarry Smith 2057d382aafbSBarry Smith Concepts: memory 2058d382aafbSBarry Smith M*/ 2059d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2060d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2061d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2062d382aafbSBarry Smith } while (0) 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith /* 2065d382aafbSBarry Smith Determine if some of the kernel computation routines use 2066d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2067d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2068d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2069e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2070d382aafbSBarry Smith */ 2071d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2072d382aafbSBarry Smith 2073d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2074d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2075d382aafbSBarry Smith #endif 2076d382aafbSBarry Smith 20775a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20785a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2082d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2086d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2090d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2094d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2095d382aafbSBarry Smith #endif 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2098d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2099d382aafbSBarry Smith #endif 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2102d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2106d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2110d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2111d382aafbSBarry Smith #endif 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2114d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2115d382aafbSBarry Smith #endif 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2118d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2122d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2123d382aafbSBarry Smith #endif 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2126d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2127d382aafbSBarry Smith #endif 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith #endif 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith /* 2132d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2133d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2134d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2135d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2136d382aafbSBarry Smith ugly extern "C" {} wrappers. 2137d382aafbSBarry Smith */ 2138d382aafbSBarry Smith #if defined(__cplusplus) 2139d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2140d382aafbSBarry Smith #define EXTERN_C_END } 2141d382aafbSBarry Smith #else 2142d382aafbSBarry Smith #define EXTERN_C_BEGIN 2143d382aafbSBarry Smith #define EXTERN_C_END 2144d382aafbSBarry Smith #endif 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith /*MC 2149d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2150d382aafbSBarry Smith communication 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith Level: beginner 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2155d382aafbSBarry Smith 2156d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2157d382aafbSBarry Smith M*/ 2158d382aafbSBarry Smith 2159d382aafbSBarry Smith /*MC 2160d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2161d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 21621cc8b206SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith Level: beginner 2165d382aafbSBarry Smith 21661cc8b206SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL 2167d382aafbSBarry Smith M*/ 2168d382aafbSBarry Smith 2169d382aafbSBarry Smith /*MC 21708619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21718619c96cSJed Brown 21728619c96cSJed Brown Synopsis: 21738619c96cSJed Brown #include <petscsys.h> 21748619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21758619c96cSJed Brown 21768619c96cSJed Brown Level: beginner 21778619c96cSJed Brown 21788619c96cSJed Brown Note: 21798cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21808619c96cSJed Brown 21818619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21828619c96cSJed Brown M*/ 21838619c96cSJed Brown 21848619c96cSJed Brown /*MC 2185d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2186d382aafbSBarry Smith 2187d382aafbSBarry Smith Level: beginner 2188d382aafbSBarry Smith 21891cc8b206SBarry Smith .seealso: PetscScalar 2190d382aafbSBarry Smith M*/ 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith /*MC 2193d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith Level: beginner 2196d382aafbSBarry Smith 2197d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2198d382aafbSBarry Smith pass this value 2199d382aafbSBarry Smith 22001cc8b206SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT 2201d382aafbSBarry Smith M*/ 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2204d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2205014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2206014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2207d382aafbSBarry Smith #else 2208d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2209d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2210d382aafbSBarry Smith #endif 2211d382aafbSBarry Smith #endif 2212d382aafbSBarry Smith 2213d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2214d382aafbSBarry Smith 2215d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2216d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2217d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2218d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2219d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2220d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2221d382aafbSBarry Smith 2222c5df96a5SBarry Smith #undef __FUNCT__ 2223c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 222461b0d812SBarry Smith /*@C 222561b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 222661b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 222761b0d812SBarry Smith 222861b0d812SBarry Smith Not Collective 222961b0d812SBarry Smith 223061b0d812SBarry Smith Input Parameter: 223161b0d812SBarry Smith . a - the PetscInt value 223261b0d812SBarry Smith 223361b0d812SBarry Smith Output Parameter: 223461b0d812SBarry Smith . b - the resulting PetscBLASInt value 223561b0d812SBarry Smith 223661b0d812SBarry Smith Level: advanced 223761b0d812SBarry Smith 223861b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 223961b0d812SBarry Smith @*/ 2240c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2241c5df96a5SBarry Smith { 2242c5df96a5SBarry Smith PetscFunctionBegin; 2243ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2244c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2245c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2246c5df96a5SBarry Smith #endif 2247c5df96a5SBarry Smith PetscFunctionReturn(0); 2248c5df96a5SBarry Smith } 2249c5df96a5SBarry Smith 22504dc2109aSBarry Smith #undef __FUNCT__ 22514dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 225261b0d812SBarry Smith /*@C 225361b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 225461b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 225561b0d812SBarry Smith 225661b0d812SBarry Smith Not Collective 225761b0d812SBarry Smith 225861b0d812SBarry Smith Input Parameter: 225961b0d812SBarry Smith . a - the PetscInt value 226061b0d812SBarry Smith 226161b0d812SBarry Smith Output Parameter: 226261b0d812SBarry Smith . b - the resulting PetscMPIInt value 226361b0d812SBarry Smith 226461b0d812SBarry Smith Level: advanced 226561b0d812SBarry Smith 226661b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 226761b0d812SBarry Smith @*/ 22684dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22694dc2109aSBarry Smith { 22704dc2109aSBarry Smith PetscFunctionBegin; 2271ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22724dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22734dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22744dc2109aSBarry Smith #endif 22754dc2109aSBarry Smith PetscFunctionReturn(0); 22764dc2109aSBarry Smith } 22774dc2109aSBarry Smith 22782f18eb33SBarry Smith #define PetscIntMult64bit(a,b) ((Petsc64bitInt)(a))*((Petsc64bitInt)(b)) 22792f18eb33SBarry Smith 22802f18eb33SBarry Smith #undef __FUNCT__ 22812f18eb33SBarry Smith #define __FUNCT__ "PetscRealIntMultTruncate" 22822f18eb33SBarry Smith /*@C 22832f18eb33SBarry Smith 22842f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22852f18eb33SBarry Smith 22862f18eb33SBarry Smith Not Collective 22872f18eb33SBarry Smith 22882f18eb33SBarry Smith Input Parameter: 22892f18eb33SBarry Smith + a - the PetscReal value 22902f18eb33SBarry Smith - b - the second value 22912f18eb33SBarry Smith 22922f18eb33SBarry Smith Output Parameter: 22932f18eb33SBarry Smith . c - the result as a PetscInt value 22942f18eb33SBarry Smith 22952f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 22962f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 22972f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22982f18eb33SBarry Smith 22992f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23002f18eb33SBarry Smith 23012f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23022f18eb33SBarry Smith 23032f18eb33SBarry Smith Level: advanced 23042f18eb33SBarry Smith 23052f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23062f18eb33SBarry Smith @*/ 23072f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23082f18eb33SBarry Smith { 23092f18eb33SBarry Smith Petsc64bitInt r; 23102f18eb33SBarry Smith 2311*2d4442ebSLisandro Dalcin r = (Petsc64bitInt) (a*(PetscReal)b); 23122f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23132f18eb33SBarry Smith return (PetscInt) r; 23142f18eb33SBarry Smith } 23152f18eb33SBarry Smith 23162f18eb33SBarry Smith #undef __FUNCT__ 23172f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultTruncate" 23182f18eb33SBarry Smith /*@C 23192f18eb33SBarry Smith 23202f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23212f18eb33SBarry Smith 23222f18eb33SBarry Smith Not Collective 23232f18eb33SBarry Smith 23242f18eb33SBarry Smith Input Parameter: 23252f18eb33SBarry Smith + a - the PetscInt value 23262f18eb33SBarry Smith - b - the second value 23272f18eb33SBarry Smith 23282f18eb33SBarry Smith Output Parameter: 23292f18eb33SBarry Smith . c - the result as a PetscInt value 23302f18eb33SBarry Smith 23312f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 23322f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23332f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23342f18eb33SBarry Smith 23352f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23362f18eb33SBarry Smith 23372f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23382f18eb33SBarry Smith 23392f18eb33SBarry Smith Level: advanced 23402f18eb33SBarry Smith 23412f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23422f18eb33SBarry Smith @*/ 23432f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23442f18eb33SBarry Smith { 23452f18eb33SBarry Smith Petsc64bitInt r; 23462f18eb33SBarry Smith 23472f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 23482f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23492f18eb33SBarry Smith return (PetscInt) r; 23502f18eb33SBarry Smith } 23512f18eb33SBarry Smith 23522f18eb33SBarry Smith #undef __FUNCT__ 2353f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumTruncate" 2354f91af8c7SBarry Smith /*@C 2355f91af8c7SBarry Smith 2356f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2357f91af8c7SBarry Smith 2358f91af8c7SBarry Smith Not Collective 2359f91af8c7SBarry Smith 2360f91af8c7SBarry Smith Input Parameter: 2361f91af8c7SBarry Smith + a - the PetscInt value 2362f91af8c7SBarry Smith - b - the second value 2363f91af8c7SBarry Smith 2364f91af8c7SBarry Smith Output Parameter: 2365f91af8c7SBarry Smith . c - the result as a PetscInt value 2366f91af8c7SBarry Smith 2367f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 2368f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2369f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2370f91af8c7SBarry Smith 2371f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2372f91af8c7SBarry Smith 2373f91af8c7SBarry Smith Level: advanced 2374f91af8c7SBarry Smith 2375f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2376f91af8c7SBarry Smith @*/ 2377f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2378f91af8c7SBarry Smith { 2379f91af8c7SBarry Smith Petsc64bitInt r; 2380f91af8c7SBarry Smith 2381f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2382f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2383f91af8c7SBarry Smith return (PetscInt) r; 2384f91af8c7SBarry Smith } 2385f91af8c7SBarry Smith 2386f91af8c7SBarry Smith #undef __FUNCT__ 23872f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultError" 23882f18eb33SBarry Smith /*@C 23892f18eb33SBarry Smith 23902f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23912f18eb33SBarry Smith 23922f18eb33SBarry Smith Not Collective 23932f18eb33SBarry Smith 23942f18eb33SBarry Smith Input Parameter: 23952f18eb33SBarry Smith + a - the PetscInt value 23962f18eb33SBarry Smith - b - the second value 23972f18eb33SBarry Smith 23982f18eb33SBarry Smith Output Parameter:ma 23992f18eb33SBarry Smith . c - the result as a PetscInt value 24002f18eb33SBarry Smith 24012f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 24022f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24032f18eb33SBarry Smith 24042f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 24052f18eb33SBarry Smith 24062f18eb33SBarry Smith Level: advanced 24072f18eb33SBarry Smith 24082f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 24092f18eb33SBarry Smith @*/ 24102f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24112f18eb33SBarry Smith { 24122f18eb33SBarry Smith Petsc64bitInt r; 24132f18eb33SBarry Smith 24142f18eb33SBarry Smith PetscFunctionBegin; 24152f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 24162f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24172f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24182f18eb33SBarry Smith #endif 2419f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2420f91af8c7SBarry Smith PetscFunctionReturn(0); 2421f91af8c7SBarry Smith } 2422f91af8c7SBarry Smith 2423f91af8c7SBarry Smith #undef __FUNCT__ 2424f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumError" 2425f91af8c7SBarry Smith /*@C 2426f91af8c7SBarry Smith 2427f91af8c7SBarry Smith PetscIntSumError - Computes the product of two positive PetscInt and generates an error with overflow. 2428f91af8c7SBarry Smith 2429f91af8c7SBarry Smith Not Collective 2430f91af8c7SBarry Smith 2431f91af8c7SBarry Smith Input Parameter: 2432f91af8c7SBarry Smith + a - the PetscInt value 2433f91af8c7SBarry Smith - b - the second value 2434f91af8c7SBarry Smith 2435f91af8c7SBarry Smith Output Parameter:ma 2436f91af8c7SBarry Smith . c - the result as a PetscInt value 2437f91af8c7SBarry Smith 2438f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 2439f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2440f91af8c7SBarry Smith 2441f91af8c7SBarry Smith Level: advanced 2442f91af8c7SBarry Smith 2443f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2444f91af8c7SBarry Smith @*/ 2445f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2446f91af8c7SBarry Smith { 2447f91af8c7SBarry Smith Petsc64bitInt r; 2448f91af8c7SBarry Smith 2449f91af8c7SBarry Smith PetscFunctionBegin; 2450f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2451f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2452f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2453f91af8c7SBarry Smith #endif 2454f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24552f18eb33SBarry Smith PetscFunctionReturn(0); 24562f18eb33SBarry Smith } 2457c5df96a5SBarry Smith 2458d382aafbSBarry Smith /* 24592981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2460d382aafbSBarry Smith */ 2461d382aafbSBarry Smith #if defined(hz) 2462d382aafbSBarry Smith #undef hz 2463d382aafbSBarry Smith #endif 2464d382aafbSBarry Smith 2465d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2466d382aafbSBarry Smith 2467d382aafbSBarry Smith 2468d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2469d382aafbSBarry Smith #include <limits.h> 2470d382aafbSBarry Smith #endif 2471d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2472d382aafbSBarry Smith #include <sys/param.h> 2473d382aafbSBarry Smith #endif 2474d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2475d382aafbSBarry Smith #include <sys/types.h> 2476d382aafbSBarry Smith #endif 2477d382aafbSBarry Smith #if defined(MAXPATHLEN) 2478d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2479d382aafbSBarry Smith #elif defined(MAX_PATH) 2480d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2481d382aafbSBarry Smith #elif defined(_MAX_PATH) 2482d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2483d382aafbSBarry Smith #else 2484d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2485d382aafbSBarry Smith #endif 2486d382aafbSBarry Smith 2487d382aafbSBarry Smith /*MC 2488d382aafbSBarry Smith 2489d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2490d382aafbSBarry Smith 2491d382aafbSBarry Smith $ 1) classic Fortran 77 style 2492af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2493d382aafbSBarry Smith $ XXX variablename 2494d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2495d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2496d382aafbSBarry Smith $ 2497d382aafbSBarry Smith $ 2) classic Fortran 90 style 2498af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2499af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2500d382aafbSBarry Smith $ XXX variablename 2501d382aafbSBarry Smith $ 2502d382aafbSBarry Smith $ 3) Using Fortran modules 2503af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2504d382aafbSBarry Smith $ use petscXXXX 2505d382aafbSBarry Smith $ XXX variablename 2506d382aafbSBarry Smith $ 2507d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2508af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2509d382aafbSBarry Smith $ use petscXXXX 2510d382aafbSBarry Smith $ type(XXX) variablename 2511e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2512d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2513d382aafbSBarry Smith 2514d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2515d382aafbSBarry Smith 2516d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2517d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2518d382aafbSBarry Smith $ integer variablename 2519d382aafbSBarry Smith $ 2520d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2521d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2522d382aafbSBarry Smith 2523d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2524d382aafbSBarry Smith for only a few PETSc functions. 2525d382aafbSBarry Smith 2526d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2527d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2528d382aafbSBarry Smith you cannot have something like 2529d382aafbSBarry Smith $ PetscInt row,col 2530d382aafbSBarry Smith $ PetscScalar val 2531d382aafbSBarry Smith $ ... 2532d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2533d382aafbSBarry Smith You must instead have 2534d382aafbSBarry Smith $ PetscInt row(1),col(1) 2535d382aafbSBarry Smith $ PetscScalar val(1) 2536d382aafbSBarry Smith $ ... 2537d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2538d382aafbSBarry Smith 2539d382aafbSBarry Smith 2540d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2541d382aafbSBarry Smith 2542af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2543af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2544d382aafbSBarry Smith 2545af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2546af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2547af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2548d382aafbSBarry Smith 2549af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2550e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2551d382aafbSBarry Smith 2552af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2553d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2554d382aafbSBarry Smith 2555af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2556d382aafbSBarry Smith automatically by "make allfortranstubs". 2557d382aafbSBarry Smith 2558af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2559af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2560d382aafbSBarry Smith include their predecessors 2561d382aafbSBarry Smith 2562d382aafbSBarry Smith Level: beginner 2563d382aafbSBarry Smith 2564d382aafbSBarry Smith M*/ 2565d382aafbSBarry Smith 2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 257227710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2573d382aafbSBarry Smith 2574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 257660e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 258117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 258217d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 258517df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2588745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 259321e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2594e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2595d382aafbSBarry Smith 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2598d382aafbSBarry Smith 259976bdecfbSBarry Smith /*J 2600d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2601d382aafbSBarry Smith 2602d382aafbSBarry Smith Level: beginner 2603d382aafbSBarry Smith 2604e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2605d382aafbSBarry Smith with the option --download-sprng 2606d382aafbSBarry Smith 26078f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 260876bdecfbSBarry Smith J*/ 260919fd82e9SBarry Smith typedef const char* PetscRandomType; 2610d382aafbSBarry Smith #define PETSCRAND "rand" 2611d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2612d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2613c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2614d382aafbSBarry Smith 2615d382aafbSBarry Smith /* Logging support */ 2616014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2617d382aafbSBarry Smith 2618607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2619d382aafbSBarry Smith 2620d382aafbSBarry Smith /*S 2621d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2622d382aafbSBarry Smith 2623d382aafbSBarry Smith Level: intermediate 2624d382aafbSBarry Smith 2625d382aafbSBarry Smith Concepts: random numbers 2626d382aafbSBarry Smith 2627d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2628d382aafbSBarry Smith S*/ 2629d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2630d382aafbSBarry Smith 2631d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2632140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2633d382aafbSBarry Smith 2634bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 263519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 263719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2638685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2640d382aafbSBarry Smith 2641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2650d382aafbSBarry Smith 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 265897540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 265997540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2660d382aafbSBarry Smith 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2672e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2673d382aafbSBarry Smith 2674d382aafbSBarry Smith /* 2675d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2676d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2677d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2678d382aafbSBarry Smith PetscBinarySeek(). 2679d382aafbSBarry Smith */ 2680d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2681d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2682d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2683d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2684d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2685d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2686d382aafbSBarry Smith 2687d382aafbSBarry Smith /*E 2688d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2689d382aafbSBarry Smith 2690d382aafbSBarry Smith Level: advanced 2691d382aafbSBarry Smith 2692d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2693d382aafbSBarry Smith E*/ 2694d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2698d382aafbSBarry Smith 2699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2705d382aafbSBarry Smith 2706014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2708014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2709014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2710014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2711cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2712cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2713d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2714d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2715d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2716d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27176afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27186afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27196afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27206afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27216afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2722d382aafbSBarry Smith 27236145cd65SJed Brown /*E 27246145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27256145cd65SJed Brown 27266145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27276145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27286145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27296145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27306145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27311654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27321654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27336145cd65SJed Brown 27346145cd65SJed Brown Level: developer 27356145cd65SJed Brown 27366145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27376145cd65SJed Brown E*/ 27386145cd65SJed Brown typedef enum { 27396145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27406145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27411654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 274212af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27436145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27446145cd65SJed Brown } PetscBuildTwoSidedType; 27456145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27466145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27476145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27486145cd65SJed Brown 2749014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2750d382aafbSBarry Smith 2751d382aafbSBarry Smith /*E 2752d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2753d382aafbSBarry Smith 2754d382aafbSBarry Smith Level: beginner 2755d382aafbSBarry Smith 2756d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2757d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2758d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2759d382aafbSBarry Smith E*/ 27606fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2761d382aafbSBarry Smith 2762d382aafbSBarry Smith /*MC 2763d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2764d382aafbSBarry Smith 2765d382aafbSBarry Smith Level: beginner 2766d382aafbSBarry Smith 2767d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2768eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2769eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2770d382aafbSBarry Smith 2771d382aafbSBarry Smith M*/ 2772d382aafbSBarry Smith 2773d382aafbSBarry Smith /*MC 2774d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2775d382aafbSBarry Smith value into that location 2776d382aafbSBarry Smith 2777d382aafbSBarry Smith Level: beginner 2778d382aafbSBarry Smith 2779d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2780eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2781eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2782d382aafbSBarry Smith 2783d382aafbSBarry Smith M*/ 2784d382aafbSBarry Smith 2785d382aafbSBarry Smith /*MC 2786d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2787d382aafbSBarry Smith 2788d382aafbSBarry Smith Level: beginner 2789d382aafbSBarry Smith 2790d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2791d382aafbSBarry Smith 2792d382aafbSBarry Smith M*/ 2793d382aafbSBarry Smith 2794ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2795ce94432eSBarry Smith 279645487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 279745487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 279845487dadSJed Brown 2799d382aafbSBarry Smith /*S 2800306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2801306c2d5bSBarry Smith 2802306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2803306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 280436be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2805306c2d5bSBarry Smith 2806306c2d5bSBarry Smith Sample Usage: 2807306c2d5bSBarry Smith PetscSubcommCreate() 2808306c2d5bSBarry Smith PetscSubcommSetNumber() 2809306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2810306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2811306c2d5bSBarry Smith PetscSubcommDestroy() 2812d382aafbSBarry Smith 2813d382aafbSBarry Smith Level: advanced 2814d382aafbSBarry Smith 2815d382aafbSBarry Smith Concepts: communicator, create 2816306c2d5bSBarry Smith 2817306c2d5bSBarry Smith Notes: 2818306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2819306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2820306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2821306c2d5bSBarry Smith 2822306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2823306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2824306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2825306c2d5bSBarry Smith 2826306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2827306c2d5bSBarry Smith are performed. 2828306c2d5bSBarry Smith 2829306c2d5bSBarry Smith 2830306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2831306c2d5bSBarry Smith 2832d382aafbSBarry Smith S*/ 2833d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2834d382aafbSBarry Smith 2835d382aafbSBarry Smith struct _n_PetscSubcomm { 2836d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2837d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2838306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 283945487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 284045487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2841708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 284245487dadSJed Brown PetscSubcommType type; 2843e5acf8a4SHong Zhang char *subcommprefix; 2844d382aafbSBarry Smith }; 2845d382aafbSBarry Smith 2846c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2847306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 284836be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 285365d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2854053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2855f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2856e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2857d382aafbSBarry Smith 28580f453b92SJed Brown /*S 28590f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28600f453b92SJed Brown 28610f453b92SJed Brown Level: developer 28620f453b92SJed Brown 28630f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28640f453b92SJed Brown S*/ 28650f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 286613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28670f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 286813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2869137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2870137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2871137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 287213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 287313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28740f453b92SJed Brown 2875471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2876471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2877471ecdacSJed Brown * possible. */ 287835005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2879d382aafbSBarry Smith 2880268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 28811f817a21SBarry Smith #undef __FUNCT__ 28821f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 28831f817a21SBarry Smith /*@C 28841f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28851f817a21SBarry Smith 28861f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28871f817a21SBarry Smith 28881f817a21SBarry Smith Input Parameters: 28891f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28901f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28911f817a21SBarry Smith 2892850545d0SSatish Balay Level: intermediate 2893850545d0SSatish Balay 28941f817a21SBarry Smith Options Database: 28951f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 28961f817a21SBarry Smith @*/ 2897dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2898dff31646SBarry Smith { 2899dff31646SBarry Smith size_t len; 2900dff31646SBarry Smith char *vstring; 2901dff31646SBarry Smith PetscErrorCode ierr; 2902dff31646SBarry Smith 29031f817a21SBarry Smith PetscFunctionBegin; 29048d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2905dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 290635005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2907dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2908dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29091f817a21SBarry Smith PetscFunctionReturn(0); 2910dff31646SBarry Smith } 2911dff31646SBarry Smith 2912b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2913fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2914fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2915f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2916fe278a28SBarry Smith 2917f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2918f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2919b967cddfSBarry Smith 292004102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2921dff31646SBarry Smith 292268e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29235dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2924d382aafbSBarry Smith 2925b2566f29SBarry Smith 2926b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2927b2566f29SBarry Smith /* 2928b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2929b2566f29SBarry Smith */ 29308f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2931b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2932b2566f29SBarry Smith #else 2933b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2934b2566f29SBarry Smith #endif 2935b2566f29SBarry Smith 2936d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2937d382aafbSBarry Smith #undef __FUNCT__ 2938d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2939d382aafbSBarry Smith 2940d382aafbSBarry Smith #endif 2941