1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 49c5e4d11fSDmitry Karpeev files within extern "C" 50c5e4d11fSDmitry Karpeev */ 51c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 52c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 53c5e4d11fSDmitry Karpeev #endif 54c5e4d11fSDmitry Karpeev 55ed938b00SJed Brown #if defined(__cplusplus) 56ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 57ed938b00SJed Brown #else 58ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 59ed938b00SJed Brown #endif 60ed938b00SJed Brown 61ed938b00SJed Brown #if defined(__cplusplus) 62ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 63ed938b00SJed Brown #else 64ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 65ed938b00SJed Brown #endif 66ed938b00SJed Brown 67ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 68014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 69014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7021f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 71014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 72014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 73014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7421f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 75d382aafbSBarry Smith #else 76014dd563SJed Brown # define PETSC_DLLEXPORT 77014dd563SJed Brown # define PETSC_DLLIMPORT 7821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #endif 80014dd563SJed Brown 81014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 82014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 83014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 84014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 85014dd563SJed Brown #endif 86014dd563SJed Brown 872c280183SJed Brown #if defined(__cplusplus) 88014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 89638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 9021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 91014dd563SJed Brown #else 92014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 93638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 946258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 95d382aafbSBarry Smith #endif 9627710113SBarry Smith 972c8e378dSBarry Smith #include <petscversion.h> 98301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 99d382aafbSBarry Smith 100d382aafbSBarry Smith /* ========================================================================== */ 101d382aafbSBarry Smith 102d382aafbSBarry Smith /* 103d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 104d382aafbSBarry Smith 105d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 106d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 107d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 108d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 109d382aafbSBarry Smith mpicxx.h directly in their code 110d382aafbSBarry Smith */ 111fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 112d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 113fa9e63e2SJed Brown #endif 114fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 115d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 116fa9e63e2SJed Brown #endif 117076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 118076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 119076e11b5SSatish Balay #endif 1202c8e378dSBarry Smith #include <mpi.h> 12165013866SBarry Smith 122d382aafbSBarry Smith /* 123a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 124a7886beaSBarry Smith This usually happens because 125a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 126a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 127a7886beaSBarry Smith */ 128a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 129a7886beaSBarry Smith # if !defined(__MPIUNI_H) 130a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 131a7886beaSBarry Smith # endif 132a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 133a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 134a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 135a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 136a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 137a7886beaSBarry Smith # endif 138a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 139a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 140a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 141c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 142c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 143a7886beaSBarry Smith # endif 144a7886beaSBarry Smith #endif 145a7886beaSBarry Smith 146a7886beaSBarry Smith /* 1472981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 148d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 149d382aafbSBarry Smith */ 150d382aafbSBarry Smith #include <stdio.h> 151d382aafbSBarry Smith 152d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 153d382aafbSBarry Smith #if !defined(MPIAPI) 154d382aafbSBarry Smith #define MPIAPI 155d382aafbSBarry Smith #endif 156d382aafbSBarry Smith 157894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 158c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 159894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 160894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1618ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1628ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 163894dd566SJed Brown # endif 164894dd566SJed Brown #endif 165894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 166894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1678ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1688ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 169894dd566SJed Brown #endif 170b3506946SBarry Smith 171d382aafbSBarry Smith /*MC 1721957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 173d382aafbSBarry Smith 174d382aafbSBarry Smith Level: beginner 175d382aafbSBarry Smith 176d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 177d382aafbSBarry Smith M*/ 178d382aafbSBarry Smith typedef int PetscErrorCode; 179d382aafbSBarry Smith 180d382aafbSBarry Smith /*MC 181d382aafbSBarry Smith 182503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 183d382aafbSBarry Smith 1841957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1851957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 1861957e957SBarry Smith 1871957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 1881957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 1891957e957SBarry Smith 1901957e957SBarry Smith Level: developer 191d382aafbSBarry Smith 1920700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 193d382aafbSBarry Smith M*/ 1940700a824SBarry Smith typedef int PetscClassId; 195d382aafbSBarry Smith 196d382aafbSBarry Smith 197d382aafbSBarry Smith /*MC 198d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 199d382aafbSBarry Smith 200d382aafbSBarry Smith Level: intermediate 201d382aafbSBarry Smith 202d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2033b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 204d382aafbSBarry Smith 2054dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2062981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 207d382aafbSBarry Smith 208d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 209d382aafbSBarry Smith 210d382aafbSBarry Smith M*/ 211d382aafbSBarry Smith typedef int PetscMPIInt; 212d382aafbSBarry Smith 213d382aafbSBarry Smith /*MC 214d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 215d382aafbSBarry Smith 216d382aafbSBarry Smith Level: intermediate 217d382aafbSBarry Smith 218d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 219d382aafbSBarry Smith M*/ 220d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2215a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 222d382aafbSBarry Smith 223fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 224fab38c73SJed Brown #include <stdint.h> 225fab38c73SJed Brown #endif 226fab38c73SJed Brown 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2293b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 230d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 231d382aafbSBarry Smith 232d382aafbSBarry Smith Level: intermediate 233d382aafbSBarry Smith 234d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 235d382aafbSBarry Smith M*/ 236fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 237fab38c73SJed Brown typedef int64_t Petsc64bitInt; 238fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 239f505b413SSatish Balay typedef long long Petsc64bitInt; 240f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 241236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 242236ed0a3SSatish Balay #else 243f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 244236ed0a3SSatish Balay #endif 245d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 246236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 24741860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 24868db2e82SFande Kong # define MPIU_INT MPI_LONG_LONG_INT 249fab38c73SJed Brown # else 250d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 251fab38c73SJed Brown # endif 252d382aafbSBarry Smith #else 253d382aafbSBarry Smith typedef int PetscInt; 254d382aafbSBarry Smith #define MPIU_INT MPI_INT 255d382aafbSBarry Smith #endif 256e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 257e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 258e56f5c9eSBarry Smith #else 259e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 260e56f5c9eSBarry Smith #endif 261236ed0a3SSatish Balay 262d382aafbSBarry Smith 263702bc34aSSatish Balay /*MC 264702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 265702bc34aSSatish Balay 266702bc34aSSatish Balay Level: intermediate 267702bc34aSSatish Balay 268702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 269702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 270702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 271702bc34aSSatish Balay 272c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2732981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 274702bc34aSSatish Balay 2752981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 276702bc34aSSatish Balay if you run ./configure with the option 277702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2782981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2792981ebdbSBarry Smith 2802981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2812981ebdbSBarry Smith 2822981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 283702bc34aSSatish Balay 284702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 285702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 286702bc34aSSatish Balay 287702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 288702bc34aSSatish Balay 289702bc34aSSatish Balay M*/ 290702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 291702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 292702bc34aSSatish Balay #else 293702bc34aSSatish Balay typedef int PetscBLASInt; 294702bc34aSSatish Balay #endif 295702bc34aSSatish Balay 29658b60935SBarry Smith /*EC 29758b60935SBarry Smith 2982981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 29958b60935SBarry Smith 30058b60935SBarry Smith Level: advanced 30158b60935SBarry Smith 30258b60935SBarry Smith .seealso: PetscObjectSetPrecision() 30358b60935SBarry Smith E*/ 30458b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 305014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 30658b60935SBarry Smith 307503cfb0cSBarry Smith /* 308503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 309503cfb0cSBarry Smith */ 310d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 311adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 312d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 313adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 314d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 315adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 316d382aafbSBarry Smith #else 317d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 318d382aafbSBarry Smith #endif 319d382aafbSBarry Smith 320d382aafbSBarry Smith 321d382aafbSBarry Smith /* 322d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 323d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 324d382aafbSBarry Smith */ 325014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 326d382aafbSBarry Smith 327d382aafbSBarry Smith /* 328d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 329d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 330d382aafbSBarry Smith */ 331014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 332d382aafbSBarry Smith 333d382aafbSBarry Smith /*MC 334d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 335d382aafbSBarry Smith 336d382aafbSBarry Smith Synopsis: 337aaa7dc30SBarry Smith #include <petscsys.h> 338ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 339d382aafbSBarry Smith 340eca87e8dSBarry Smith Not Collective 341eca87e8dSBarry Smith 342d382aafbSBarry Smith Input Parameters: 343d382aafbSBarry Smith . cond - condition or expression 344d382aafbSBarry Smith 345d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 346d382aafbSBarry Smith branch is unlikely. 347d382aafbSBarry Smith 348d382aafbSBarry Smith Level: advanced 349d382aafbSBarry Smith 350d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 351d382aafbSBarry Smith M*/ 352d382aafbSBarry Smith 353d382aafbSBarry Smith /*MC 354d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 355d382aafbSBarry Smith 356d382aafbSBarry Smith Synopsis: 357aaa7dc30SBarry Smith #include <petscsys.h> 358ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 359d382aafbSBarry Smith 360eca87e8dSBarry Smith Not Collective 361eca87e8dSBarry Smith 362d382aafbSBarry Smith Input Parameters: 363d382aafbSBarry Smith . cond - condition or expression 364d382aafbSBarry Smith 365d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 366d382aafbSBarry Smith branch is likely. 367d382aafbSBarry Smith 368d382aafbSBarry Smith Level: advanced 369d382aafbSBarry Smith 370d382aafbSBarry Smith .seealso: PetscUnlikely() 371d382aafbSBarry Smith M*/ 372d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 373d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 374d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 375d382aafbSBarry Smith #else 376cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 377cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 378d382aafbSBarry Smith #endif 379d382aafbSBarry Smith 380d382aafbSBarry Smith /* 381d382aafbSBarry Smith Declare extern C stuff after including external header files 382d382aafbSBarry Smith */ 383d382aafbSBarry Smith 384d382aafbSBarry Smith 385d382aafbSBarry Smith /* 386d382aafbSBarry Smith Basic PETSc constants 387d382aafbSBarry Smith */ 388d382aafbSBarry Smith 389d382aafbSBarry Smith /*E 390ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 391d382aafbSBarry Smith 392d382aafbSBarry Smith Level: beginner 393d382aafbSBarry Smith 394ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 39534e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 39634e82e7dSBarry Smith 397d382aafbSBarry Smith E*/ 398ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3996a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4005a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 40170b3c8c7SBarry Smith 4028b49ba18SBarry Smith /* 4038b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4048b49ba18SBarry Smith */ 4058b49ba18SBarry Smith #include <petscmath.h> 4068b49ba18SBarry Smith 40770b3c8c7SBarry Smith /*E 40870b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 40970b3c8c7SBarry Smith 41070b3c8c7SBarry Smith Level: beginner 41170b3c8c7SBarry Smith 41270b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 41370b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 41470b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 41570b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 41670b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 41770b3c8c7SBarry Smith 41870b3c8c7SBarry Smith E*/ 41970b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4206a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 421d382aafbSBarry Smith 422d382aafbSBarry Smith /*MC 423ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 424d382aafbSBarry Smith 425d382aafbSBarry Smith Level: beginner 426d382aafbSBarry Smith 427d382aafbSBarry Smith Note: Zero integer 428d382aafbSBarry Smith 429ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 430d382aafbSBarry Smith M*/ 431d382aafbSBarry Smith 432d382aafbSBarry Smith /*MC 433ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 434d382aafbSBarry Smith 435d382aafbSBarry Smith Level: beginner 436d382aafbSBarry Smith 437d382aafbSBarry Smith Note: Nonzero integer 438d382aafbSBarry Smith 439ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 440d382aafbSBarry Smith M*/ 441d382aafbSBarry Smith 442d382aafbSBarry Smith /*MC 4430298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 444d382aafbSBarry Smith 445d382aafbSBarry Smith Level: beginner 446d382aafbSBarry Smith 447d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 448d382aafbSBarry Smith some default 449d382aafbSBarry Smith 450d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 451503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 452d382aafbSBarry Smith 453d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 454d382aafbSBarry Smith 455d382aafbSBarry Smith M*/ 4563bcbec90SJed Brown #define PETSC_NULL NULL 457d382aafbSBarry Smith 458d382aafbSBarry Smith /*MC 4590298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 460d382aafbSBarry Smith 461d382aafbSBarry Smith Level: beginner 462d382aafbSBarry Smith 463d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 464d382aafbSBarry Smith some default 465d382aafbSBarry Smith 466d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 467d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 468d382aafbSBarry Smith 469d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 470d382aafbSBarry Smith 471d382aafbSBarry Smith M*/ 4720298fd71SBarry Smith #define PETSC_IGNORE NULL 473d382aafbSBarry Smith 474d382aafbSBarry Smith /*MC 475557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 476557d4da8SBarry Smith where you wish PETSc to use the default. 477557d4da8SBarry Smith 478557d4da8SBarry Smith Level: beginner 479557d4da8SBarry Smith 480557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 481557d4da8SBarry Smith 482557d4da8SBarry Smith M*/ 483557d4da8SBarry Smith #define PETSC_DECIDE -1 484557d4da8SBarry Smith 485557d4da8SBarry Smith /*MC 486d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 487d382aafbSBarry Smith where you wish PETSc to compute the required value. 488d382aafbSBarry Smith 489d382aafbSBarry Smith Level: beginner 490d382aafbSBarry Smith 491557d4da8SBarry Smith 492557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 493557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 494557d4da8SBarry Smith 4950298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 496d382aafbSBarry Smith 497d382aafbSBarry Smith M*/ 498d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 499d382aafbSBarry Smith 500d382aafbSBarry Smith /*MC 501557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 502557d4da8SBarry Smith where you wish PETSc to use the default. 503557d4da8SBarry Smith 504557d4da8SBarry Smith Level: beginner 505557d4da8SBarry Smith 5062d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 507557d4da8SBarry Smith 5080298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 509557d4da8SBarry Smith 510557d4da8SBarry Smith M*/ 511557d4da8SBarry Smith #define PETSC_DEFAULT -2 512557d4da8SBarry Smith 513557d4da8SBarry Smith /*MC 514d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 515d382aafbSBarry Smith all the processs that PETSc knows about. 516d382aafbSBarry Smith 517d382aafbSBarry Smith Level: beginner 518d382aafbSBarry Smith 519d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 520d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 521d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 522a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 523a990b902SBarry Smith 524a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 525a990b902SBarry Smith is called because it may not have a valid value yet. 526d382aafbSBarry Smith 527d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 528d382aafbSBarry Smith 529d382aafbSBarry Smith M*/ 530014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 531d382aafbSBarry Smith 532d382aafbSBarry Smith /*MC 533503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 534d382aafbSBarry Smith 535d382aafbSBarry Smith Level: beginner 536d382aafbSBarry Smith 537a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 538a990b902SBarry Smith 539d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 540d382aafbSBarry Smith 541d382aafbSBarry Smith M*/ 542d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 543d382aafbSBarry Smith 544d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 545014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 546014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 547014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5484cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 549d382aafbSBarry Smith 550014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 551014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 552014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 553d382aafbSBarry Smith 554d382aafbSBarry Smith /*MC 555854ce69bSBarry Smith PetscMalloc - Allocates memory, One should use PetscMalloc1() or PetscCalloc1() usually instead of this 556d382aafbSBarry Smith 557eca87e8dSBarry Smith Synopsis: 558aaa7dc30SBarry Smith #include <petscsys.h> 559eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 560eca87e8dSBarry Smith 561eca87e8dSBarry Smith Not Collective 562eca87e8dSBarry Smith 563d382aafbSBarry Smith Input Parameter: 564d382aafbSBarry Smith . m - number of bytes to allocate 565d382aafbSBarry Smith 566d382aafbSBarry Smith Output Parameter: 567d382aafbSBarry Smith . result - memory allocated 568d382aafbSBarry Smith 569d382aafbSBarry Smith Level: beginner 570d382aafbSBarry Smith 57149d7da52SJed Brown Notes: 57249d7da52SJed Brown Memory is always allocated at least double aligned 573d382aafbSBarry Smith 57449d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 575d382aafbSBarry Smith 576d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 577d382aafbSBarry Smith 578d382aafbSBarry Smith Concepts: memory allocation 579d382aafbSBarry Smith 580d382aafbSBarry Smith M*/ 58149d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 582d382aafbSBarry Smith 583d382aafbSBarry Smith /*MC 584503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 585d382aafbSBarry Smith 586d382aafbSBarry Smith Synopsis: 587aaa7dc30SBarry Smith #include <petscsys.h> 588d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 589d382aafbSBarry Smith 590eca87e8dSBarry Smith Not Collective 591eca87e8dSBarry Smith 592eca87e8dSBarry Smith Input Parameters: 593eca87e8dSBarry Smith . addr - address to align (any pointer type) 594eca87e8dSBarry Smith 595d382aafbSBarry Smith Level: developer 596d382aafbSBarry Smith 597d382aafbSBarry Smith .seealso: PetscMallocAlign() 598d382aafbSBarry Smith 599d382aafbSBarry Smith Concepts: memory allocation 600d382aafbSBarry Smith M*/ 601d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 602d382aafbSBarry Smith 603d382aafbSBarry Smith /*MC 604785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 605d382aafbSBarry Smith 606eca87e8dSBarry Smith Synopsis: 607aaa7dc30SBarry Smith #include <petscsys.h> 608785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 609785e854fSJed Brown 610785e854fSJed Brown Not Collective 611785e854fSJed Brown 612785e854fSJed Brown Input Parameter: 613785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 614785e854fSJed Brown 615785e854fSJed Brown Output Parameter: 616785e854fSJed Brown . r1 - memory allocated in first chunk 617785e854fSJed Brown 618785e854fSJed Brown Level: developer 619785e854fSJed Brown 6201795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 621785e854fSJed Brown 622785e854fSJed Brown Concepts: memory allocation 623785e854fSJed Brown 624785e854fSJed Brown M*/ 625f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 626785e854fSJed Brown 627785e854fSJed Brown /*MC 6281795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6291795a4d1SJed Brown 6301795a4d1SJed Brown Synopsis: 631aaa7dc30SBarry Smith #include <petscsys.h> 6321795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6331795a4d1SJed Brown 6341795a4d1SJed Brown Not Collective 6351795a4d1SJed Brown 6361795a4d1SJed Brown Input Parameter: 6371795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6381795a4d1SJed Brown 6391795a4d1SJed Brown Output Parameter: 6401795a4d1SJed Brown . r1 - memory allocated in first chunk 6411795a4d1SJed Brown 6421795a4d1SJed Brown Level: developer 6431795a4d1SJed Brown 6441795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6451795a4d1SJed Brown 6461795a4d1SJed Brown Concepts: memory allocation 6471795a4d1SJed Brown 6481795a4d1SJed Brown M*/ 6491795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6501795a4d1SJed Brown 6511795a4d1SJed Brown /*MC 652dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 653d382aafbSBarry Smith 654eca87e8dSBarry Smith Synopsis: 655aaa7dc30SBarry Smith #include <petscsys.h> 656dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 657eca87e8dSBarry Smith 658eca87e8dSBarry Smith Not Collective 659eca87e8dSBarry Smith 660d382aafbSBarry Smith Input Parameter: 661d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 662dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 663d382aafbSBarry Smith 664d382aafbSBarry Smith Output Parameter: 665d382aafbSBarry Smith + r1 - memory allocated in first chunk 666d382aafbSBarry Smith - r2 - memory allocated in second chunk 667d382aafbSBarry Smith 668d382aafbSBarry Smith Level: developer 669d382aafbSBarry Smith 6701795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 671d382aafbSBarry Smith 672d382aafbSBarry Smith Concepts: memory allocation 673d382aafbSBarry Smith 674d382aafbSBarry Smith M*/ 67520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6761d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 677d382aafbSBarry Smith #else 678ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 679ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6803589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 681d382aafbSBarry Smith #endif 682d382aafbSBarry Smith 683d382aafbSBarry Smith /*MC 6841795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 685d382aafbSBarry Smith 686eca87e8dSBarry Smith Synopsis: 687aaa7dc30SBarry Smith #include <petscsys.h> 6881795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 689eca87e8dSBarry Smith 690eca87e8dSBarry Smith Not Collective 691eca87e8dSBarry Smith 692d382aafbSBarry Smith Input Parameter: 693d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6941795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6951795a4d1SJed Brown 6961795a4d1SJed Brown Output Parameter: 6971795a4d1SJed Brown + r1 - memory allocated in first chunk 6981795a4d1SJed Brown - r2 - memory allocated in second chunk 6991795a4d1SJed Brown 7001795a4d1SJed Brown Level: developer 7011795a4d1SJed Brown 7021795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7031795a4d1SJed Brown 7041795a4d1SJed Brown Concepts: memory allocation 7051795a4d1SJed Brown M*/ 7061795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7071795a4d1SJed Brown 7081795a4d1SJed Brown /*MC 709dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 710d382aafbSBarry Smith 711d382aafbSBarry Smith Synopsis: 712aaa7dc30SBarry Smith #include <petscsys.h> 713dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 714d382aafbSBarry Smith 715d382aafbSBarry Smith Not Collective 716d382aafbSBarry Smith 717d382aafbSBarry Smith Input Parameter: 718d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 719d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 720dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 721d382aafbSBarry Smith 722d382aafbSBarry Smith Output Parameter: 723d382aafbSBarry Smith + r1 - memory allocated in first chunk 724d382aafbSBarry Smith . r2 - memory allocated in second chunk 725d382aafbSBarry Smith - r3 - memory allocated in third chunk 726d382aafbSBarry Smith 727d382aafbSBarry Smith Level: developer 728d382aafbSBarry Smith 7291795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 730d382aafbSBarry Smith 731d382aafbSBarry Smith Concepts: memory allocation 732d382aafbSBarry Smith 733d382aafbSBarry Smith M*/ 73420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7351d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 736d382aafbSBarry Smith #else 737ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 738278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7393589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 740d382aafbSBarry Smith #endif 741d382aafbSBarry Smith 742d382aafbSBarry Smith /*MC 7431795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 744d382aafbSBarry Smith 745eca87e8dSBarry Smith Synopsis: 746aaa7dc30SBarry Smith #include <petscsys.h> 7471795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 748eca87e8dSBarry Smith 749eca87e8dSBarry Smith Not Collective 750eca87e8dSBarry Smith 751d382aafbSBarry Smith Input Parameter: 752d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 753d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7541795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7551795a4d1SJed Brown 7561795a4d1SJed Brown Output Parameter: 7571795a4d1SJed Brown + r1 - memory allocated in first chunk 7581795a4d1SJed Brown . r2 - memory allocated in second chunk 7591795a4d1SJed Brown - r3 - memory allocated in third chunk 7601795a4d1SJed Brown 7611795a4d1SJed Brown Level: developer 7621795a4d1SJed Brown 7631795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7641795a4d1SJed Brown 7651795a4d1SJed Brown Concepts: memory allocation 7661795a4d1SJed Brown M*/ 7671795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7681795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7691795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7701795a4d1SJed Brown 7711795a4d1SJed Brown /*MC 772dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 773d382aafbSBarry Smith 774d382aafbSBarry Smith Synopsis: 775aaa7dc30SBarry Smith #include <petscsys.h> 776dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 777d382aafbSBarry Smith 778d382aafbSBarry Smith Not Collective 779d382aafbSBarry Smith 780d382aafbSBarry Smith Input Parameter: 781d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 782d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 783d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 784dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 785d382aafbSBarry Smith 786d382aafbSBarry Smith Output Parameter: 787d382aafbSBarry Smith + r1 - memory allocated in first chunk 788d382aafbSBarry Smith . r2 - memory allocated in second chunk 789d382aafbSBarry Smith . r3 - memory allocated in third chunk 790d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 791d382aafbSBarry Smith 792d382aafbSBarry Smith Level: developer 793d382aafbSBarry Smith 7941795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 795d382aafbSBarry Smith 796d382aafbSBarry Smith Concepts: memory allocation 797d382aafbSBarry Smith 798d382aafbSBarry Smith M*/ 79920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8001d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 801d382aafbSBarry Smith #else 802dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 803ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 804278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8053589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 806d382aafbSBarry Smith #endif 807d382aafbSBarry Smith 808d382aafbSBarry Smith /*MC 8091795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 810d382aafbSBarry Smith 811eca87e8dSBarry Smith Synopsis: 812aaa7dc30SBarry Smith #include <petscsys.h> 8131795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 814eca87e8dSBarry Smith 815eca87e8dSBarry Smith Not Collective 816eca87e8dSBarry Smith 817d382aafbSBarry Smith Input Parameter: 818d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 819d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 820d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8211795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8221795a4d1SJed Brown 8231795a4d1SJed Brown Output Parameter: 8241795a4d1SJed Brown + r1 - memory allocated in first chunk 8251795a4d1SJed Brown . r2 - memory allocated in second chunk 8261795a4d1SJed Brown . r3 - memory allocated in third chunk 8271795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8281795a4d1SJed Brown 8291795a4d1SJed Brown Level: developer 8301795a4d1SJed Brown 8311795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8321795a4d1SJed Brown 8331795a4d1SJed Brown Concepts: memory allocation 8341795a4d1SJed Brown 8351795a4d1SJed Brown M*/ 8361795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8371795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8381795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8391795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8401795a4d1SJed Brown 8411795a4d1SJed Brown /*MC 842dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 843d382aafbSBarry Smith 844d382aafbSBarry Smith Synopsis: 845aaa7dc30SBarry Smith #include <petscsys.h> 846dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 847d382aafbSBarry Smith 848d382aafbSBarry Smith Not Collective 849d382aafbSBarry Smith 850d382aafbSBarry Smith Input Parameter: 851d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 852d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 853d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 854d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 855dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 856d382aafbSBarry Smith 857d382aafbSBarry Smith Output Parameter: 858d382aafbSBarry Smith + r1 - memory allocated in first chunk 859d382aafbSBarry Smith . r2 - memory allocated in second chunk 860d382aafbSBarry Smith . r3 - memory allocated in third chunk 861d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 862d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 863d382aafbSBarry Smith 864d382aafbSBarry Smith Level: developer 865d382aafbSBarry Smith 8661795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 867d382aafbSBarry Smith 868d382aafbSBarry Smith Concepts: memory allocation 869d382aafbSBarry Smith 870d382aafbSBarry Smith M*/ 87120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8721d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 873d382aafbSBarry Smith #else 874dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 875ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 876278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8773589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 878d382aafbSBarry Smith #endif 879d382aafbSBarry Smith 880d382aafbSBarry Smith /*MC 8811795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 882d382aafbSBarry Smith 883eca87e8dSBarry Smith Synopsis: 884aaa7dc30SBarry Smith #include <petscsys.h> 8851795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 886eca87e8dSBarry Smith 887eca87e8dSBarry Smith Not Collective 888eca87e8dSBarry Smith 889d382aafbSBarry Smith Input Parameter: 890d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 891d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 892d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 893d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 8941795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8951795a4d1SJed Brown 8961795a4d1SJed Brown Output Parameter: 8971795a4d1SJed Brown + r1 - memory allocated in first chunk 8981795a4d1SJed Brown . r2 - memory allocated in second chunk 8991795a4d1SJed Brown . r3 - memory allocated in third chunk 9001795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9011795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9021795a4d1SJed Brown 9031795a4d1SJed Brown Level: developer 9041795a4d1SJed Brown 9051795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9061795a4d1SJed Brown 9071795a4d1SJed Brown Concepts: memory allocation 9081795a4d1SJed Brown 9091795a4d1SJed Brown M*/ 9101795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9111795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9121795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9131795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 914d382aafbSBarry Smith 915d382aafbSBarry Smith /*MC 916dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 917d382aafbSBarry Smith 918d382aafbSBarry Smith Synopsis: 919aaa7dc30SBarry Smith #include <petscsys.h> 920dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 921d382aafbSBarry Smith 922d382aafbSBarry Smith Not Collective 923d382aafbSBarry Smith 924d382aafbSBarry Smith Input Parameter: 925d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 926d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 927d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 928d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 929d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 930dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 931d382aafbSBarry Smith 932d382aafbSBarry Smith Output Parameter: 933d382aafbSBarry Smith + r1 - memory allocated in first chunk 934d382aafbSBarry Smith . r2 - memory allocated in second chunk 935d382aafbSBarry Smith . r3 - memory allocated in third chunk 936d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 937d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 938d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 939d382aafbSBarry Smith 940d382aafbSBarry Smith Level: developer 941d382aafbSBarry Smith 9421795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 943d382aafbSBarry Smith 944d382aafbSBarry Smith Concepts: memory allocation 945d382aafbSBarry Smith 946d382aafbSBarry Smith M*/ 94720a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9481d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 949d382aafbSBarry Smith #else 950dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 951ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 952278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9533589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 954d382aafbSBarry Smith #endif 955d382aafbSBarry Smith 956d382aafbSBarry Smith /*MC 9571795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 958d382aafbSBarry Smith 959eca87e8dSBarry Smith Synopsis: 960aaa7dc30SBarry Smith #include <petscsys.h> 9611795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 962eca87e8dSBarry Smith 963eca87e8dSBarry Smith Not Collective 964eca87e8dSBarry Smith 965d382aafbSBarry Smith Input Parameter: 966d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 967d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 968d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 969d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 970d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9711795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9721795a4d1SJed Brown 9731795a4d1SJed Brown Output Parameter: 9741795a4d1SJed Brown + r1 - memory allocated in first chunk 9751795a4d1SJed Brown . r2 - memory allocated in second chunk 9761795a4d1SJed Brown . r3 - memory allocated in third chunk 9771795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9781795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9791795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9801795a4d1SJed Brown 9811795a4d1SJed Brown Level: developer 9821795a4d1SJed Brown 9831795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9841795a4d1SJed Brown 9851795a4d1SJed Brown Concepts: memory allocation 9861795a4d1SJed Brown M*/ 9871795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9881795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9891795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9901795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9911795a4d1SJed Brown 9921795a4d1SJed Brown /*MC 993dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 994d382aafbSBarry Smith 995d382aafbSBarry Smith Synopsis: 996aaa7dc30SBarry Smith #include <petscsys.h> 997dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 998d382aafbSBarry Smith 999d382aafbSBarry Smith Not Collective 1000d382aafbSBarry Smith 1001d382aafbSBarry Smith Input Parameter: 1002d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1003d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1004d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1005d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1006d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1007d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1008dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1009d382aafbSBarry Smith 1010d382aafbSBarry Smith Output Parameter: 1011d382aafbSBarry Smith + r1 - memory allocated in first chunk 1012d382aafbSBarry Smith . r2 - memory allocated in second chunk 1013d382aafbSBarry Smith . r3 - memory allocated in third chunk 1014d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1015d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1016d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1017eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith Level: developer 1020d382aafbSBarry Smith 10211795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1022d382aafbSBarry Smith 1023d382aafbSBarry Smith Concepts: memory allocation 1024d382aafbSBarry Smith 1025d382aafbSBarry Smith M*/ 102620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10271d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1028d382aafbSBarry Smith #else 1029dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1030ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1031278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10323589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1033d382aafbSBarry Smith #endif 1034d382aafbSBarry Smith 1035d382aafbSBarry Smith /*MC 10361795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10371795a4d1SJed Brown 10381795a4d1SJed Brown Synopsis: 1039aaa7dc30SBarry Smith #include <petscsys.h> 10401795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10411795a4d1SJed Brown 10421795a4d1SJed Brown Not Collective 10431795a4d1SJed Brown 10441795a4d1SJed Brown Input Parameter: 10451795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10461795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10471795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10481795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10491795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10501795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10511795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10521795a4d1SJed Brown 10531795a4d1SJed Brown Output Parameter: 10541795a4d1SJed Brown + r1 - memory allocated in first chunk 10551795a4d1SJed Brown . r2 - memory allocated in second chunk 10561795a4d1SJed Brown . r3 - memory allocated in third chunk 10571795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10581795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10591795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10601795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10611795a4d1SJed Brown 10621795a4d1SJed Brown Level: developer 10631795a4d1SJed Brown 10641795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10651795a4d1SJed Brown 10661795a4d1SJed Brown Concepts: memory allocation 10671795a4d1SJed Brown M*/ 10681795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10697ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10701795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10711795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10727ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10731795a4d1SJed Brown 10741795a4d1SJed Brown /*MC 1075503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1076d382aafbSBarry Smith 1077eca87e8dSBarry Smith Synopsis: 1078aaa7dc30SBarry Smith #include <petscsys.h> 1079b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1080eca87e8dSBarry Smith 1081eca87e8dSBarry Smith Not Collective 1082eca87e8dSBarry Smith 1083d382aafbSBarry Smith Output Parameter: 1084b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1085d382aafbSBarry Smith 1086d382aafbSBarry Smith Level: beginner 1087d382aafbSBarry Smith 1088ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1089d382aafbSBarry Smith 1090d382aafbSBarry Smith Concepts: memory allocation 1091d382aafbSBarry Smith 1092d382aafbSBarry Smith M*/ 1093b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1094ad0619ddSBarry Smith 1095ad0619ddSBarry Smith /*MC 1096b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1097ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1098ad0619ddSBarry Smith 1099ad0619ddSBarry Smith Synopsis: 1100aaa7dc30SBarry Smith #include <petscsys.h> 1101b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1102ad0619ddSBarry Smith 1103ad0619ddSBarry Smith Not Collective 1104ad0619ddSBarry Smith 1105ad0619ddSBarry Smith Input Parameter: 1106b00a9115SJed Brown . obj - object memory is logged to 1107ad0619ddSBarry Smith 1108ad0619ddSBarry Smith Output Parameter: 1109b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1110ad0619ddSBarry Smith 1111ad0619ddSBarry Smith Level: developer 1112ad0619ddSBarry Smith 1113ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1114ad0619ddSBarry Smith 1115ad0619ddSBarry Smith Concepts: memory allocation 1116ad0619ddSBarry Smith 1117ad0619ddSBarry Smith M*/ 1118d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1119d382aafbSBarry Smith 1120d382aafbSBarry Smith /*MC 1121d382aafbSBarry Smith PetscFree - Frees memory 1122d382aafbSBarry Smith 1123eca87e8dSBarry Smith Synopsis: 1124aaa7dc30SBarry Smith #include <petscsys.h> 1125eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1126eca87e8dSBarry Smith 1127eca87e8dSBarry Smith Not Collective 1128eca87e8dSBarry Smith 1129d382aafbSBarry Smith Input Parameter: 1130d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1131d382aafbSBarry Smith 1132d382aafbSBarry Smith Level: beginner 1133d382aafbSBarry Smith 113449d7da52SJed Brown Notes: 113549d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 113649d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1137d382aafbSBarry Smith 1138d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1139d382aafbSBarry Smith 1140d382aafbSBarry Smith Concepts: memory allocation 1141d382aafbSBarry Smith 1142d382aafbSBarry Smith M*/ 114349d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith /*MC 1146d382aafbSBarry Smith PetscFreeVoid - Frees memory 1147d382aafbSBarry Smith 1148d382aafbSBarry Smith Synopsis: 1149aaa7dc30SBarry Smith #include <petscsys.h> 1150d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1151d382aafbSBarry Smith 1152eca87e8dSBarry Smith Not Collective 1153eca87e8dSBarry Smith 1154eca87e8dSBarry Smith Input Parameter: 1155eca87e8dSBarry Smith . memory - memory to free 1156eca87e8dSBarry Smith 1157d382aafbSBarry Smith Level: beginner 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1160d382aafbSBarry Smith 1161d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1162d382aafbSBarry Smith 1163d382aafbSBarry Smith Concepts: memory allocation 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith M*/ 1166efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1167d382aafbSBarry Smith 1168d382aafbSBarry Smith 1169d382aafbSBarry Smith /*MC 1170d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1171d382aafbSBarry Smith 1172eca87e8dSBarry Smith Synopsis: 1173aaa7dc30SBarry Smith #include <petscsys.h> 1174eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1175eca87e8dSBarry Smith 1176eca87e8dSBarry Smith Not Collective 1177eca87e8dSBarry Smith 1178d382aafbSBarry Smith Input Parameter: 1179d382aafbSBarry Smith + memory1 - memory to free 1180d382aafbSBarry Smith - memory2 - 2nd memory to free 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith Level: developer 1183d382aafbSBarry Smith 1184d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1185d382aafbSBarry Smith 1186d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith Concepts: memory allocation 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith M*/ 1191b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1192d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1193d382aafbSBarry Smith #else 1194e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1195d382aafbSBarry Smith #endif 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith /*MC 1198d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1199d382aafbSBarry Smith 1200eca87e8dSBarry Smith Synopsis: 1201aaa7dc30SBarry Smith #include <petscsys.h> 1202eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1203eca87e8dSBarry Smith 1204eca87e8dSBarry Smith Not Collective 1205eca87e8dSBarry Smith 1206d382aafbSBarry Smith Input Parameter: 1207d382aafbSBarry Smith + memory1 - memory to free 1208d382aafbSBarry Smith . memory2 - 2nd memory to free 1209d382aafbSBarry Smith - memory3 - 3rd memory to free 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith Level: developer 1212d382aafbSBarry Smith 1213d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1214d382aafbSBarry Smith 1215d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1216d382aafbSBarry Smith 1217d382aafbSBarry Smith Concepts: memory allocation 1218d382aafbSBarry Smith 1219d382aafbSBarry Smith M*/ 1220b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1221d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1222d382aafbSBarry Smith #else 1223e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1224d382aafbSBarry Smith #endif 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith /*MC 1227d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1228d382aafbSBarry Smith 1229eca87e8dSBarry Smith Synopsis: 1230aaa7dc30SBarry Smith #include <petscsys.h> 1231eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1232eca87e8dSBarry Smith 1233eca87e8dSBarry Smith Not Collective 1234eca87e8dSBarry Smith 1235d382aafbSBarry Smith Input Parameter: 1236d382aafbSBarry Smith + m1 - memory to free 1237d382aafbSBarry Smith . m2 - 2nd memory to free 1238d382aafbSBarry Smith . m3 - 3rd memory to free 1239d382aafbSBarry Smith - m4 - 4th memory to free 1240d382aafbSBarry Smith 1241d382aafbSBarry Smith Level: developer 1242d382aafbSBarry Smith 1243d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1244d382aafbSBarry Smith 1245d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1246d382aafbSBarry Smith 1247d382aafbSBarry Smith Concepts: memory allocation 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith M*/ 1250b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1251d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1252d382aafbSBarry Smith #else 1253e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1254d382aafbSBarry Smith #endif 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith /*MC 1257d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1258d382aafbSBarry Smith 1259eca87e8dSBarry Smith Synopsis: 1260aaa7dc30SBarry Smith #include <petscsys.h> 1261eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1262eca87e8dSBarry Smith 1263eca87e8dSBarry Smith Not Collective 1264eca87e8dSBarry Smith 1265d382aafbSBarry Smith Input Parameter: 1266d382aafbSBarry Smith + m1 - memory to free 1267d382aafbSBarry Smith . m2 - 2nd memory to free 1268d382aafbSBarry Smith . m3 - 3rd memory to free 1269d382aafbSBarry Smith . m4 - 4th memory to free 1270d382aafbSBarry Smith - m5 - 5th memory to free 1271d382aafbSBarry Smith 1272d382aafbSBarry Smith Level: developer 1273d382aafbSBarry Smith 1274d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1275d382aafbSBarry Smith 1276d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith Concepts: memory allocation 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith M*/ 1281b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1282d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1283d382aafbSBarry Smith #else 1284e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1285e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1286d382aafbSBarry Smith #endif 1287d382aafbSBarry Smith 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith /*MC 1290d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1291d382aafbSBarry Smith 1292eca87e8dSBarry Smith Synopsis: 1293aaa7dc30SBarry Smith #include <petscsys.h> 1294eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1295eca87e8dSBarry Smith 1296eca87e8dSBarry Smith Not Collective 1297eca87e8dSBarry Smith 1298d382aafbSBarry Smith Input Parameter: 1299d382aafbSBarry Smith + m1 - memory to free 1300d382aafbSBarry Smith . m2 - 2nd memory to free 1301d382aafbSBarry Smith . m3 - 3rd memory to free 1302d382aafbSBarry Smith . m4 - 4th memory to free 1303d382aafbSBarry Smith . m5 - 5th memory to free 1304d382aafbSBarry Smith - m6 - 6th memory to free 1305d382aafbSBarry Smith 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith Level: developer 1308d382aafbSBarry Smith 1309d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1310d382aafbSBarry Smith 1311d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1312d382aafbSBarry Smith 1313d382aafbSBarry Smith Concepts: memory allocation 1314d382aafbSBarry Smith 1315d382aafbSBarry Smith M*/ 1316b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1317d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1318d382aafbSBarry Smith #else 1319e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1320e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1321e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1322d382aafbSBarry Smith #endif 1323d382aafbSBarry Smith 1324d382aafbSBarry Smith /*MC 1325d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1326d382aafbSBarry Smith 1327eca87e8dSBarry Smith Synopsis: 1328aaa7dc30SBarry Smith #include <petscsys.h> 1329eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1330eca87e8dSBarry Smith 1331eca87e8dSBarry Smith Not Collective 1332eca87e8dSBarry Smith 1333d382aafbSBarry Smith Input Parameter: 1334d382aafbSBarry Smith + m1 - memory to free 1335d382aafbSBarry Smith . m2 - 2nd memory to free 1336d382aafbSBarry Smith . m3 - 3rd memory to free 1337d382aafbSBarry Smith . m4 - 4th memory to free 1338d382aafbSBarry Smith . m5 - 5th memory to free 1339d382aafbSBarry Smith . m6 - 6th memory to free 1340d382aafbSBarry Smith - m7 - 7th memory to free 1341d382aafbSBarry Smith 1342d382aafbSBarry Smith 1343d382aafbSBarry Smith Level: developer 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1348d382aafbSBarry Smith PetscMalloc7() 1349d382aafbSBarry Smith 1350d382aafbSBarry Smith Concepts: memory allocation 1351d382aafbSBarry Smith 1352d382aafbSBarry Smith M*/ 1353b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1354d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1355d382aafbSBarry Smith #else 1356e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1357e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 135806c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1359e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1360d382aafbSBarry Smith #endif 1361d382aafbSBarry Smith 1362efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1363efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1364efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1366d382aafbSBarry Smith 1367d382aafbSBarry Smith /* 1368a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1369a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1370a5057860SBarry Smith timing etc. 1371a5057860SBarry Smith */ 1372a5057860SBarry Smith typedef double PetscLogDouble; 1373a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1374a5057860SBarry Smith 1375a5057860SBarry Smith /* 137666d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1377d382aafbSBarry Smith */ 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13830acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1384efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1386574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1388d382aafbSBarry Smith 1389d382aafbSBarry Smith /*E 1390d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1391d382aafbSBarry Smith 1392d382aafbSBarry Smith Level: beginner 1393d382aafbSBarry Smith 1394d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1395d382aafbSBarry Smith 1396d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1397d382aafbSBarry Smith PetscDataTypeGetSize() 1398d382aafbSBarry Smith 1399d382aafbSBarry Smith E*/ 1400d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 14017e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 14026a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1403d382aafbSBarry Smith 1404d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1405d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1406d382aafbSBarry Smith #else 1407ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1408d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 140959a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141059a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1411d382aafbSBarry Smith #else 1412d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1413d382aafbSBarry Smith #endif 1414d382aafbSBarry Smith #endif 1415ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1416d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 141759a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141859a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1419d382aafbSBarry Smith #else 1420d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1421d382aafbSBarry Smith #endif 1422d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1423d382aafbSBarry Smith 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14278e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1428d382aafbSBarry Smith 1429d382aafbSBarry Smith /* 1430d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1431d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1432d382aafbSBarry Smith functionality and/or error checking. 1433d382aafbSBarry Smith */ 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1438d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14502f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14552c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 145847340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14596fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14606991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14616991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1463d382aafbSBarry Smith 1464573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1465573b0fb4SBarry Smith 1466d382aafbSBarry Smith /*S 1467d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1468d382aafbSBarry Smith 1469d382aafbSBarry Smith Level: intermediate 1470d382aafbSBarry Smith 1471d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1472d382aafbSBarry Smith S*/ 1473d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1474d382aafbSBarry Smith 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1478d382aafbSBarry Smith 1479a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1480a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1481a53986e1SJed Brown 1482d382aafbSBarry Smith /* 1483d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1484d382aafbSBarry Smith */ 1485014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14867c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1487014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14882414b3c7SJed Brown #else 14892414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14902414b3c7SJed Brown #endif 14912414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1492014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1493014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1494d9822059SBarry Smith #else 1495d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1496d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1497d9822059SBarry Smith #endif 1498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1499d382aafbSBarry Smith 1500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1502eb3f98d2SBarry Smith 1503d382aafbSBarry Smith /*S 1504d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1505d382aafbSBarry Smith 1506d382aafbSBarry Smith Level: beginner 1507d382aafbSBarry Smith 15082981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1509d382aafbSBarry Smith 15102b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1511d382aafbSBarry Smith S*/ 1512d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1513d382aafbSBarry Smith 1514270bf2e7SJed Brown /*MC 1515127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1516127c8a3bSJed Brown 1517127c8a3bSJed Brown Level: developer 1518127c8a3bSJed Brown 1519127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1520127c8a3bSJed Brown 1521127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1522127c8a3bSJed Brown M*/ 1523127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1524127c8a3bSJed Brown 1525127c8a3bSJed Brown /*MC 1526270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1527270bf2e7SJed Brown 1528270bf2e7SJed Brown Level: developer 1529270bf2e7SJed Brown 1530270bf2e7SJed Brown Notes: 1531270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1532270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1533270bf2e7SJed Brown 15348dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1535270bf2e7SJed Brown M*/ 1536270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1537270bf2e7SJed Brown 1538d382aafbSBarry Smith /*S 1539140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1540d382aafbSBarry Smith by string name 1541d382aafbSBarry Smith 1542d382aafbSBarry Smith Level: advanced 1543d382aafbSBarry Smith 1544140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1545d382aafbSBarry Smith S*/ 1546140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1547d382aafbSBarry Smith 1548d382aafbSBarry Smith /*E 1549d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1550d382aafbSBarry Smith 1551d382aafbSBarry Smith Level: beginner 1552d382aafbSBarry Smith 1553d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1554d382aafbSBarry Smith 1555d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1556d382aafbSBarry Smith 1557d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1558d382aafbSBarry Smith 1559d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1560d382aafbSBarry Smith 1561d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1562d382aafbSBarry Smith 1563d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1564d382aafbSBarry Smith E*/ 1565d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1566d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1567d6a4318aSJed Brown 1568639ff905SBarry Smith /* 1569639ff905SBarry Smith Defines PETSc error handling. 1570639ff905SBarry Smith */ 1571639ff905SBarry Smith #include <petscerror.h> 1572d382aafbSBarry Smith 15730700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1574014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1575014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1577d382aafbSBarry Smith 1578d382aafbSBarry Smith /* 1579d382aafbSBarry Smith Routines that get memory usage information from the OS 1580d382aafbSBarry Smith */ 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1584b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1585d382aafbSBarry Smith 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1588d382aafbSBarry Smith 1589d382aafbSBarry Smith /* 1590d382aafbSBarry Smith Initialization of PETSc 1591d382aafbSBarry Smith */ 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1602d382aafbSBarry Smith 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1604607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1605d382aafbSBarry Smith 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1610d382aafbSBarry Smith 1611d382aafbSBarry Smith /* 1612d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16132981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1614d382aafbSBarry Smith */ 1615638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1616638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1617638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1618d382aafbSBarry Smith 1619d382aafbSBarry Smith /* 1620d382aafbSBarry Smith Functions that can act on any PETSc object. 1621d382aafbSBarry Smith */ 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1641bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1642bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1646d382aafbSBarry Smith 1647665c2dedSJed Brown #include <petscviewertypes.h> 1648639ff905SBarry Smith #include <petscoptions.h> 1649639ff905SBarry Smith 1650447ac60bSBarry Smith 16510633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16520633abcbSJed Brown 1653639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1654c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1655dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1656639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16570005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16580005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1666685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1672d382aafbSBarry Smith 1673e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16747aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1675e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1676e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1677e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1678e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1679e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1680e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1681e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1682e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1683e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 168415681b3cSBarry Smith 1685ec7429eaSBarry Smith #else 16867aab2a10SBarry Smith #define PetscSAWsBlock() 0 1687e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1688e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1689e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1690e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1691e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1692e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1693e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1694e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1695e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 169615681b3cSBarry Smith 1697ec7429eaSBarry Smith #endif 1698b90c6cbeSBarry Smith 16997d5d4d99SBarry Smith typedef void* PetscDLHandle; 1700e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 170182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 170282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 170382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17047d5d4d99SBarry Smith 1705d382aafbSBarry Smith 17065fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1707a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17085fe58b6fSBarry Smith #endif 17097eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1710a64a8e02SBarry Smith 1711d382aafbSBarry Smith /*S 1712140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1713d382aafbSBarry Smith 17141d0fab5eSBarry Smith Level: developer 1715d382aafbSBarry Smith 17161d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17171d0fab5eSBarry Smith 1718140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1719d382aafbSBarry Smith S*/ 1720140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1721d382aafbSBarry Smith 1722140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1723140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1724140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1725140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1726140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1727140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1728d382aafbSBarry Smith 1729d382aafbSBarry Smith /* 1730503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1731d382aafbSBarry Smith link libraries that will be loaded as needed. 1732d382aafbSBarry Smith */ 1733a240a19fSJed Brown 1734a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1735a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1736140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17371c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17381c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1740140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1741140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1742140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1743d382aafbSBarry Smith 1744d382aafbSBarry Smith /*S 1745d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1746d382aafbSBarry Smith 1747d382aafbSBarry Smith Level: advanced 1748d382aafbSBarry Smith 1749d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1750d382aafbSBarry Smith S*/ 1751d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1752014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1753014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1754014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1758014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1760d382aafbSBarry Smith 1761d382aafbSBarry Smith /* 1762d382aafbSBarry Smith Useful utility routines 1763d382aafbSBarry Smith */ 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1770d382aafbSBarry Smith 1771503cfb0cSBarry Smith /* 1772ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1773503cfb0cSBarry Smith 1774503cfb0cSBarry Smith Notes: This is useful in cases like 1775503cfb0cSBarry Smith $ int *a; 1776ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1777ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1778503cfb0cSBarry Smith */ 1779d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1780503cfb0cSBarry Smith 1781d382aafbSBarry Smith /*MC 1782d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1783d382aafbSBarry Smith 1784d382aafbSBarry Smith Synopsis: 1785aaa7dc30SBarry Smith #include <petscsys.h> 1786d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1787d382aafbSBarry Smith 1788eca87e8dSBarry Smith Not Collective 1789eca87e8dSBarry Smith 1790d382aafbSBarry Smith Input Parameters: 1791d382aafbSBarry Smith . format - the usual printf() format string 1792d382aafbSBarry Smith 1793d382aafbSBarry Smith Level: developer 1794d382aafbSBarry Smith 1795d382aafbSBarry Smith Fortran Note: 1796d382aafbSBarry Smith This routine is not supported in Fortran. 1797d382aafbSBarry Smith 1798d382aafbSBarry Smith Concepts: help messages^printing 1799d382aafbSBarry Smith Concepts: printing^help messages 1800d382aafbSBarry Smith 1801d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1802d382aafbSBarry Smith M*/ 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1804d382aafbSBarry Smith 1805fcfd50ebSBarry Smith /* 1806fcfd50ebSBarry Smith Defines PETSc profiling. 1807fcfd50ebSBarry Smith */ 18082c8e378dSBarry Smith #include <petsclog.h> 1809fcfd50ebSBarry Smith 1810b90c6cbeSBarry Smith 1811fcfd50ebSBarry Smith 1812fcfd50ebSBarry Smith /* 1813fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1814fcfd50ebSBarry Smith */ 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1822fcfd50ebSBarry Smith 1823fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1824fcfd50ebSBarry Smith #include <stdarg.h> 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1828fcfd50ebSBarry Smith 1829fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1831fcfd50ebSBarry Smith #endif 1832fcfd50ebSBarry Smith 1833f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1834f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1835f1d7fe2eSBarry Smith #endif 1836f1d7fe2eSBarry Smith 1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1840d382aafbSBarry Smith 1841d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 184396a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 184474ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1845d382aafbSBarry Smith #endif 1846d382aafbSBarry Smith 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18490ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1854d382aafbSBarry Smith 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith /*S 1858d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1859d382aafbSBarry Smith 1860d382aafbSBarry Smith Level: advanced 1861d382aafbSBarry Smith 1862d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1863d382aafbSBarry Smith S*/ 1864014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1865d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1870014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1871d382aafbSBarry Smith 1872d382aafbSBarry Smith /* 1873d382aafbSBarry Smith For use in debuggers 1874d382aafbSBarry Smith */ 1875014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1876014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1877014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1880d382aafbSBarry Smith 1881a663daf8SBarry Smith #include <stddef.h> 1882a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1883d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1884d382aafbSBarry Smith #include <stdlib.h> 1885d382aafbSBarry Smith #endif 18866c7e564aSBarry Smith 18874a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1888d382aafbSBarry Smith #include <xmmintrin.h> 1889d382aafbSBarry Smith #endif 1890d382aafbSBarry Smith 1891fcfd50ebSBarry Smith #undef __FUNCT__ 1892fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1893d382aafbSBarry Smith /*@C 1894d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1895d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1896d382aafbSBarry Smith PetscMemmove() in that case. 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith Not Collective 1899d382aafbSBarry Smith 1900d382aafbSBarry Smith Input Parameters: 1901d382aafbSBarry Smith + b - pointer to initial memory space 1902d382aafbSBarry Smith - n - length (in bytes) of space to copy 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith Output Parameter: 1905d382aafbSBarry Smith . a - pointer to copy space 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith Level: intermediate 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith Compile Option: 1910d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1911d382aafbSBarry Smith for memory copies on double precision values. 1912d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1913d382aafbSBarry Smith for memory copies on double precision values. 1914d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1915d382aafbSBarry Smith for memory copies on double precision values. 1916d382aafbSBarry Smith 1917d382aafbSBarry Smith Note: 1918d382aafbSBarry Smith This routine is analogous to memcpy(). 1919d382aafbSBarry Smith 1920503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1921503cfb0cSBarry Smith 1922d382aafbSBarry Smith Concepts: memory^copying 1923d382aafbSBarry Smith Concepts: copying^memory 1924d382aafbSBarry Smith 1925d382aafbSBarry Smith .seealso: PetscMemmove() 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith @*/ 19287087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1929d382aafbSBarry Smith { 1930d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1931c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1932c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1933a7e36092SMatthew G Knepley PetscFunctionBegin; 1934e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1935e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1936a7e36092SMatthew G Knepley #else 1937d382aafbSBarry Smith PetscFunctionBegin; 1938a7e36092SMatthew G Knepley #endif 1939a47a537aSLisandro Dalcin if (a != b && n > 0) { 1940d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1941e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1942d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1943d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1944d382aafbSBarry Smith #endif 1945d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1946c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1947d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1948d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1949c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1950c5df96a5SBarry Smith PetscErrorCode ierr; 1951c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19528b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1953d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1954d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1955d382aafbSBarry Smith #else 1956d382aafbSBarry Smith size_t i; 1957d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1958d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1959d382aafbSBarry Smith #endif 1960d382aafbSBarry Smith } else { 1961d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1962d382aafbSBarry Smith } 1963d382aafbSBarry Smith #else 1964d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1965d382aafbSBarry Smith #endif 1966d382aafbSBarry Smith } 1967d382aafbSBarry Smith PetscFunctionReturn(0); 1968d382aafbSBarry Smith } 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith /*@C 1971d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1972d382aafbSBarry Smith 1973d382aafbSBarry Smith Not Collective 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith Input Parameters: 1976d382aafbSBarry Smith + a - pointer to beginning memory location 1977d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith Level: intermediate 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith Compile Option: 1982d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1983d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1984d382aafbSBarry Smith 1985503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1986503cfb0cSBarry Smith 1987d382aafbSBarry Smith Concepts: memory^zeroing 1988d382aafbSBarry Smith Concepts: zeroing^memory 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith .seealso: PetscMemcpy() 1991d382aafbSBarry Smith @*/ 19927087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1993d382aafbSBarry Smith { 1994d382aafbSBarry Smith if (n > 0) { 1995d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1996e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1997d382aafbSBarry Smith #endif 1998d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1999d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2000d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2001d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2002d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2003d382aafbSBarry Smith } else { 2004d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2005d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2006d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2007d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2008d382aafbSBarry Smith } else { 2009d382aafbSBarry Smith #endif 2010d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2011d382aafbSBarry Smith bzero((char *)a,n); 2012d382aafbSBarry Smith #else 2013d382aafbSBarry Smith memset((char*)a,0,n); 2014d382aafbSBarry Smith #endif 2015d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2016d382aafbSBarry Smith } 2017d382aafbSBarry Smith #endif 2018d382aafbSBarry Smith } 2019d382aafbSBarry Smith return 0; 2020d382aafbSBarry Smith } 2021d382aafbSBarry Smith 2022d382aafbSBarry Smith /*MC 2023d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2024d382aafbSBarry Smith 2025eca87e8dSBarry Smith Synopsis: 2026aaa7dc30SBarry Smith #include <petscsys.h> 2027eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2028eca87e8dSBarry Smith 2029d382aafbSBarry Smith Not Collective 2030d382aafbSBarry Smith 2031d382aafbSBarry Smith Input Parameters: 2032d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2033d382aafbSBarry Smith . n - number of elements to fetch 2034d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203550d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2036d382aafbSBarry Smith 2037d382aafbSBarry Smith Level: developer 2038d382aafbSBarry Smith 2039d382aafbSBarry Smith Notes: 2040d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2041d382aafbSBarry Smith 204250d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204350d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204450d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 204663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 204763cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2050d382aafbSBarry Smith address). 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith Concepts: memory 2053d382aafbSBarry Smith M*/ 2054d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2055d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2056d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2057d382aafbSBarry Smith } while (0) 2058d382aafbSBarry Smith 2059d382aafbSBarry Smith /* 2060d382aafbSBarry Smith Determine if some of the kernel computation routines use 2061d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2062d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2063d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2064e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2065d382aafbSBarry Smith */ 2066d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2069d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2070d382aafbSBarry Smith #endif 2071d382aafbSBarry Smith 20725a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20735a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2074d382aafbSBarry Smith #endif 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2077d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2078d382aafbSBarry Smith #endif 2079d382aafbSBarry Smith 2080d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2081d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2082d382aafbSBarry Smith #endif 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2085d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2086d382aafbSBarry Smith #endif 2087d382aafbSBarry Smith 2088d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2089d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2090d382aafbSBarry Smith #endif 2091d382aafbSBarry Smith 2092d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2093d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2094d382aafbSBarry Smith #endif 2095d382aafbSBarry Smith 2096d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2097d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2098d382aafbSBarry Smith #endif 2099d382aafbSBarry Smith 2100d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2101d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2102d382aafbSBarry Smith #endif 2103d382aafbSBarry Smith 2104d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2105d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2106d382aafbSBarry Smith #endif 2107d382aafbSBarry Smith 2108d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2109d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2110d382aafbSBarry Smith #endif 2111d382aafbSBarry Smith 2112d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2113d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2114d382aafbSBarry Smith #endif 2115d382aafbSBarry Smith 2116d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2117d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2118d382aafbSBarry Smith #endif 2119d382aafbSBarry Smith 2120d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2121d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2122d382aafbSBarry Smith #endif 2123d382aafbSBarry Smith 2124d382aafbSBarry Smith #endif 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith /* 2127d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2128d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2129d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2130d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2131d382aafbSBarry Smith ugly extern "C" {} wrappers. 2132d382aafbSBarry Smith */ 2133d382aafbSBarry Smith #if defined(__cplusplus) 2134d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2135d382aafbSBarry Smith #define EXTERN_C_END } 2136d382aafbSBarry Smith #else 2137d382aafbSBarry Smith #define EXTERN_C_BEGIN 2138d382aafbSBarry Smith #define EXTERN_C_END 2139d382aafbSBarry Smith #endif 2140d382aafbSBarry Smith 2141d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2142d382aafbSBarry Smith 2143d382aafbSBarry Smith /*MC 2144d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2145d382aafbSBarry Smith communication 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith Level: beginner 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2152d382aafbSBarry Smith M*/ 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith /*MC 2155d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2156d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2157d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2158d382aafbSBarry Smith 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith Level: beginner 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2163d382aafbSBarry Smith M*/ 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith /*MC 21668619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21678619c96cSJed Brown 21688619c96cSJed Brown Synopsis: 21698619c96cSJed Brown #include <petscsys.h> 21708619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21718619c96cSJed Brown 21728619c96cSJed Brown Level: beginner 21738619c96cSJed Brown 21748619c96cSJed Brown Note: 21758cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21768619c96cSJed Brown 21778619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21788619c96cSJed Brown M*/ 21798619c96cSJed Brown 21808619c96cSJed Brown /*MC 2181d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith Level: beginner 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2186d382aafbSBarry Smith M*/ 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith /*MC 2189d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2190d382aafbSBarry Smith Level: beginner 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2193d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2196d382aafbSBarry Smith M*/ 2197d382aafbSBarry Smith 2198d382aafbSBarry Smith /*MC 2199d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2200d382aafbSBarry Smith 2201d382aafbSBarry Smith Level: beginner 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2204d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2205d382aafbSBarry Smith 2206d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2207d382aafbSBarry Smith M*/ 2208d382aafbSBarry Smith 2209d382aafbSBarry Smith /*MC 2210d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2211d382aafbSBarry Smith 2212d382aafbSBarry Smith Level: beginner 2213d382aafbSBarry Smith 2214d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2215d382aafbSBarry Smith pass this value 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2218d382aafbSBarry Smith M*/ 2219d382aafbSBarry Smith 2220d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2221d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2222014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2223014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2224d382aafbSBarry Smith #else 2225d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2226d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2227d382aafbSBarry Smith #endif 2228d382aafbSBarry Smith #endif 2229d382aafbSBarry Smith 2230d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2231d382aafbSBarry Smith 2232d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2233d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2234d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2235d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2236d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2237d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2238d382aafbSBarry Smith 2239c5df96a5SBarry Smith #undef __FUNCT__ 2240c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 224161b0d812SBarry Smith /*@C 224261b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 224361b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 224461b0d812SBarry Smith 224561b0d812SBarry Smith Not Collective 224661b0d812SBarry Smith 224761b0d812SBarry Smith Input Parameter: 224861b0d812SBarry Smith . a - the PetscInt value 224961b0d812SBarry Smith 225061b0d812SBarry Smith Output Parameter: 225161b0d812SBarry Smith . b - the resulting PetscBLASInt value 225261b0d812SBarry Smith 225361b0d812SBarry Smith Level: advanced 225461b0d812SBarry Smith 225561b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 225661b0d812SBarry Smith @*/ 2257c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2258c5df96a5SBarry Smith { 2259c5df96a5SBarry Smith PetscFunctionBegin; 2260ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2261c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2262c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2263c5df96a5SBarry Smith #endif 2264c5df96a5SBarry Smith PetscFunctionReturn(0); 2265c5df96a5SBarry Smith } 2266c5df96a5SBarry Smith 22674dc2109aSBarry Smith #undef __FUNCT__ 22684dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 226961b0d812SBarry Smith /*@C 227061b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 227161b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 227261b0d812SBarry Smith 227361b0d812SBarry Smith Not Collective 227461b0d812SBarry Smith 227561b0d812SBarry Smith Input Parameter: 227661b0d812SBarry Smith . a - the PetscInt value 227761b0d812SBarry Smith 227861b0d812SBarry Smith Output Parameter: 227961b0d812SBarry Smith . b - the resulting PetscMPIInt value 228061b0d812SBarry Smith 228161b0d812SBarry Smith Level: advanced 228261b0d812SBarry Smith 228361b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 228461b0d812SBarry Smith @*/ 22854dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22864dc2109aSBarry Smith { 22874dc2109aSBarry Smith PetscFunctionBegin; 2288ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22894dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22904dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22914dc2109aSBarry Smith #endif 22924dc2109aSBarry Smith PetscFunctionReturn(0); 22934dc2109aSBarry Smith } 22944dc2109aSBarry Smith 2295*2f18eb33SBarry Smith #define PetscIntMult64bit(a,b) ((Petsc64bitInt)(a))*((Petsc64bitInt)(b)) 2296*2f18eb33SBarry Smith 2297*2f18eb33SBarry Smith #undef __FUNCT__ 2298*2f18eb33SBarry Smith #define __FUNCT__ "PetscRealIntMultTruncate" 2299*2f18eb33SBarry Smith /*@C 2300*2f18eb33SBarry Smith 2301*2f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 2302*2f18eb33SBarry Smith 2303*2f18eb33SBarry Smith Not Collective 2304*2f18eb33SBarry Smith 2305*2f18eb33SBarry Smith Input Parameter: 2306*2f18eb33SBarry Smith + a - the PetscReal value 2307*2f18eb33SBarry Smith - b - the second value 2308*2f18eb33SBarry Smith 2309*2f18eb33SBarry Smith Output Parameter: 2310*2f18eb33SBarry Smith . c - the result as a PetscInt value 2311*2f18eb33SBarry Smith 2312*2f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 2313*2f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 2314*2f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2315*2f18eb33SBarry Smith 2316*2f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 2317*2f18eb33SBarry Smith 2318*2f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2319*2f18eb33SBarry Smith 2320*2f18eb33SBarry Smith Level: advanced 2321*2f18eb33SBarry Smith 2322*2f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2323*2f18eb33SBarry Smith @*/ 2324*2f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 2325*2f18eb33SBarry Smith { 2326*2f18eb33SBarry Smith Petsc64bitInt r; 2327*2f18eb33SBarry Smith 2328*2f18eb33SBarry Smith r = (Petsc64bitInt) (a*b); 2329*2f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2330*2f18eb33SBarry Smith return (PetscInt) r; 2331*2f18eb33SBarry Smith } 2332*2f18eb33SBarry Smith 2333*2f18eb33SBarry Smith #undef __FUNCT__ 2334*2f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultTruncate" 2335*2f18eb33SBarry Smith /*@C 2336*2f18eb33SBarry Smith 2337*2f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2338*2f18eb33SBarry Smith 2339*2f18eb33SBarry Smith Not Collective 2340*2f18eb33SBarry Smith 2341*2f18eb33SBarry Smith Input Parameter: 2342*2f18eb33SBarry Smith + a - the PetscInt value 2343*2f18eb33SBarry Smith - b - the second value 2344*2f18eb33SBarry Smith 2345*2f18eb33SBarry Smith Output Parameter: 2346*2f18eb33SBarry Smith . c - the result as a PetscInt value 2347*2f18eb33SBarry Smith 2348*2f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 2349*2f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2350*2f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2351*2f18eb33SBarry Smith 2352*2f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 2353*2f18eb33SBarry Smith 2354*2f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2355*2f18eb33SBarry Smith 2356*2f18eb33SBarry Smith Level: advanced 2357*2f18eb33SBarry Smith 2358*2f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2359*2f18eb33SBarry Smith @*/ 2360*2f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 2361*2f18eb33SBarry Smith { 2362*2f18eb33SBarry Smith Petsc64bitInt r; 2363*2f18eb33SBarry Smith 2364*2f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 2365*2f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2366*2f18eb33SBarry Smith return (PetscInt) r; 2367*2f18eb33SBarry Smith } 2368*2f18eb33SBarry Smith 2369*2f18eb33SBarry Smith #undef __FUNCT__ 2370*2f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultError" 2371*2f18eb33SBarry Smith /*@C 2372*2f18eb33SBarry Smith 2373*2f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 2374*2f18eb33SBarry Smith 2375*2f18eb33SBarry Smith Not Collective 2376*2f18eb33SBarry Smith 2377*2f18eb33SBarry Smith Input Parameter: 2378*2f18eb33SBarry Smith + a - the PetscInt value 2379*2f18eb33SBarry Smith - b - the second value 2380*2f18eb33SBarry Smith 2381*2f18eb33SBarry Smith Output Parameter:ma 2382*2f18eb33SBarry Smith . c - the result as a PetscInt value 2383*2f18eb33SBarry Smith 2384*2f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 2385*2f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2386*2f18eb33SBarry Smith 2387*2f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 2388*2f18eb33SBarry Smith 2389*2f18eb33SBarry Smith Level: advanced 2390*2f18eb33SBarry Smith 2391*2f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2392*2f18eb33SBarry Smith @*/ 2393*2f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 2394*2f18eb33SBarry Smith { 2395*2f18eb33SBarry Smith Petsc64bitInt r; 2396*2f18eb33SBarry Smith 2397*2f18eb33SBarry Smith PetscFunctionBegin; 2398*2f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 2399*2f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2400*2f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2401*2f18eb33SBarry Smith #endif 2402*2f18eb33SBarry Smith *result = (PetscInt) r; 2403*2f18eb33SBarry Smith PetscFunctionReturn(0); 2404*2f18eb33SBarry Smith } 2405c5df96a5SBarry Smith 2406d382aafbSBarry Smith /* 24072981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2408d382aafbSBarry Smith */ 2409d382aafbSBarry Smith #if defined(hz) 2410d382aafbSBarry Smith #undef hz 2411d382aafbSBarry Smith #endif 2412d382aafbSBarry Smith 2413d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2414d382aafbSBarry Smith 2415d382aafbSBarry Smith 2416d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2417d382aafbSBarry Smith #include <limits.h> 2418d382aafbSBarry Smith #endif 2419d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2420d382aafbSBarry Smith #include <sys/param.h> 2421d382aafbSBarry Smith #endif 2422d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2423d382aafbSBarry Smith #include <sys/types.h> 2424d382aafbSBarry Smith #endif 2425d382aafbSBarry Smith #if defined(MAXPATHLEN) 2426d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2427d382aafbSBarry Smith #elif defined(MAX_PATH) 2428d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2429d382aafbSBarry Smith #elif defined(_MAX_PATH) 2430d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2431d382aafbSBarry Smith #else 2432d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2433d382aafbSBarry Smith #endif 2434d382aafbSBarry Smith 2435d382aafbSBarry Smith /*MC 2436d382aafbSBarry Smith 2437d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2438d382aafbSBarry Smith 2439d382aafbSBarry Smith $ 1) classic Fortran 77 style 2440af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2441d382aafbSBarry Smith $ XXX variablename 2442d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2443d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2444d382aafbSBarry Smith $ 2445d382aafbSBarry Smith $ 2) classic Fortran 90 style 2446af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2447af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2448d382aafbSBarry Smith $ XXX variablename 2449d382aafbSBarry Smith $ 2450d382aafbSBarry Smith $ 3) Using Fortran modules 2451af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2452d382aafbSBarry Smith $ use petscXXXX 2453d382aafbSBarry Smith $ XXX variablename 2454d382aafbSBarry Smith $ 2455d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2456af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2457d382aafbSBarry Smith $ use petscXXXX 2458d382aafbSBarry Smith $ type(XXX) variablename 2459e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2460d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2461d382aafbSBarry Smith 2462d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2463d382aafbSBarry Smith 2464d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2465d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2466d382aafbSBarry Smith $ integer variablename 2467d382aafbSBarry Smith $ 2468d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2469d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2470d382aafbSBarry Smith 2471d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2472d382aafbSBarry Smith for only a few PETSc functions. 2473d382aafbSBarry Smith 2474d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2475d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2476d382aafbSBarry Smith you cannot have something like 2477d382aafbSBarry Smith $ PetscInt row,col 2478d382aafbSBarry Smith $ PetscScalar val 2479d382aafbSBarry Smith $ ... 2480d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2481d382aafbSBarry Smith You must instead have 2482d382aafbSBarry Smith $ PetscInt row(1),col(1) 2483d382aafbSBarry Smith $ PetscScalar val(1) 2484d382aafbSBarry Smith $ ... 2485d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2486d382aafbSBarry Smith 2487d382aafbSBarry Smith 2488d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2489d382aafbSBarry Smith 2490af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2491af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2492d382aafbSBarry Smith 2493af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2494af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2495af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2496d382aafbSBarry Smith 2497af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2498e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2499d382aafbSBarry Smith 2500af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2501d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2502d382aafbSBarry Smith 2503af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2504d382aafbSBarry Smith automatically by "make allfortranstubs". 2505d382aafbSBarry Smith 2506af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2507af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2508d382aafbSBarry Smith include their predecessors 2509d382aafbSBarry Smith 2510d382aafbSBarry Smith Level: beginner 2511d382aafbSBarry Smith 2512d382aafbSBarry Smith M*/ 2513d382aafbSBarry Smith 2514014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2515014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2516014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2519014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 252027710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2521d382aafbSBarry Smith 2522014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 252460e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2525014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2526014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 252917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 253017d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 253317df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2536745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2537014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2540014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 254121e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2542e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2543d382aafbSBarry Smith 2544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2546d382aafbSBarry Smith 254776bdecfbSBarry Smith /*J 2548d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2549d382aafbSBarry Smith 2550d382aafbSBarry Smith Level: beginner 2551d382aafbSBarry Smith 2552e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2553d382aafbSBarry Smith with the option --download-sprng 2554d382aafbSBarry Smith 25558f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 255676bdecfbSBarry Smith J*/ 255719fd82e9SBarry Smith typedef const char* PetscRandomType; 2558d382aafbSBarry Smith #define PETSCRAND "rand" 2559d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2560d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2561c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2562d382aafbSBarry Smith 2563d382aafbSBarry Smith /* Logging support */ 2564014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2565d382aafbSBarry Smith 2566607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2567d382aafbSBarry Smith 2568d382aafbSBarry Smith /*S 2569d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2570d382aafbSBarry Smith 2571d382aafbSBarry Smith Level: intermediate 2572d382aafbSBarry Smith 2573d382aafbSBarry Smith Concepts: random numbers 2574d382aafbSBarry Smith 2575d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2576d382aafbSBarry Smith S*/ 2577d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2578d382aafbSBarry Smith 2579d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2580140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2581d382aafbSBarry Smith 2582bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 258319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 258519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2586685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2588d382aafbSBarry Smith 2589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2598d382aafbSBarry Smith 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 260697540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 260797540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2608d382aafbSBarry Smith 2609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2620e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2621d382aafbSBarry Smith 2622d382aafbSBarry Smith /* 2623d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2624d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2625d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2626d382aafbSBarry Smith PetscBinarySeek(). 2627d382aafbSBarry Smith */ 2628d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2629d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2630d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2631d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2632d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2633d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2634d382aafbSBarry Smith 2635d382aafbSBarry Smith /*E 2636d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2637d382aafbSBarry Smith 2638d382aafbSBarry Smith Level: advanced 2639d382aafbSBarry Smith 2640d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2641d382aafbSBarry Smith E*/ 2642d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2646d382aafbSBarry Smith 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2653d382aafbSBarry Smith 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2659cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2660cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2661d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2662d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2663d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2664d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 26656afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 26666afbe7ddSJed Brown MPI_Request**,MPI_Request**, 26676afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 26686afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 26696afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2670d382aafbSBarry Smith 26716145cd65SJed Brown /*E 26726145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 26736145cd65SJed Brown 26746145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 26756145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 26766145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 26776145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 26786145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 26791654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 26801654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 26816145cd65SJed Brown 26826145cd65SJed Brown Level: developer 26836145cd65SJed Brown 26846145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 26856145cd65SJed Brown E*/ 26866145cd65SJed Brown typedef enum { 26876145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 26886145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 26891654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 269012af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 26916145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 26926145cd65SJed Brown } PetscBuildTwoSidedType; 26936145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 26946145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 26956145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 26966145cd65SJed Brown 2697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2698d382aafbSBarry Smith 2699d382aafbSBarry Smith /*E 2700d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2701d382aafbSBarry Smith 2702d382aafbSBarry Smith Level: beginner 2703d382aafbSBarry Smith 2704d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2705d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2706d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2707d382aafbSBarry Smith E*/ 27086fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2709d382aafbSBarry Smith 2710d382aafbSBarry Smith /*MC 2711d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2712d382aafbSBarry Smith 2713d382aafbSBarry Smith Level: beginner 2714d382aafbSBarry Smith 2715d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2716eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2717eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2718d382aafbSBarry Smith 2719d382aafbSBarry Smith M*/ 2720d382aafbSBarry Smith 2721d382aafbSBarry Smith /*MC 2722d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2723d382aafbSBarry Smith value into that location 2724d382aafbSBarry Smith 2725d382aafbSBarry Smith Level: beginner 2726d382aafbSBarry Smith 2727d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2728eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2729eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2730d382aafbSBarry Smith 2731d382aafbSBarry Smith M*/ 2732d382aafbSBarry Smith 2733d382aafbSBarry Smith /*MC 2734d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2735d382aafbSBarry Smith 2736d382aafbSBarry Smith Level: beginner 2737d382aafbSBarry Smith 2738d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2739d382aafbSBarry Smith 2740d382aafbSBarry Smith M*/ 2741d382aafbSBarry Smith 2742ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2743ce94432eSBarry Smith 274445487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 274545487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 274645487dadSJed Brown 2747d382aafbSBarry Smith /*S 2748306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2749306c2d5bSBarry Smith 2750306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2751306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 275236be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2753306c2d5bSBarry Smith 2754306c2d5bSBarry Smith Sample Usage: 2755306c2d5bSBarry Smith PetscSubcommCreate() 2756306c2d5bSBarry Smith PetscSubcommSetNumber() 2757306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2758306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2759306c2d5bSBarry Smith PetscSubcommDestroy() 2760d382aafbSBarry Smith 2761d382aafbSBarry Smith Level: advanced 2762d382aafbSBarry Smith 2763d382aafbSBarry Smith Concepts: communicator, create 2764306c2d5bSBarry Smith 2765306c2d5bSBarry Smith Notes: 2766306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2767306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2768306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2769306c2d5bSBarry Smith 2770306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2771306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2772306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2773306c2d5bSBarry Smith 2774306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2775306c2d5bSBarry Smith are performed. 2776306c2d5bSBarry Smith 2777306c2d5bSBarry Smith 2778306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2779306c2d5bSBarry Smith 2780d382aafbSBarry Smith S*/ 2781d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2782d382aafbSBarry Smith 2783d382aafbSBarry Smith struct _n_PetscSubcomm { 2784d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2785d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2786306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 278745487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 278845487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2789708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 279045487dadSJed Brown PetscSubcommType type; 2791d382aafbSBarry Smith }; 2792d382aafbSBarry Smith 2793c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2794306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 279536be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2796014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2798014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2799014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 280065d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2801053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2802f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2803d382aafbSBarry Smith 28040f453b92SJed Brown /*S 28050f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28060f453b92SJed Brown 28070f453b92SJed Brown Level: developer 28080f453b92SJed Brown 28090f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28100f453b92SJed Brown S*/ 28110f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 281213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28130f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 281413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2815137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2816137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2817137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 281813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 281913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28200f453b92SJed Brown 2821471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2822471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2823471ecdacSJed Brown * possible. */ 282435005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2825d382aafbSBarry Smith 2826268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 28271f817a21SBarry Smith #undef __FUNCT__ 28281f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 28291f817a21SBarry Smith /*@C 28301f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28311f817a21SBarry Smith 28321f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28331f817a21SBarry Smith 28341f817a21SBarry Smith Input Parameters: 28351f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28361f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28371f817a21SBarry Smith 2838850545d0SSatish Balay Level: intermediate 2839850545d0SSatish Balay 28401f817a21SBarry Smith Options Database: 28411f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 28421f817a21SBarry Smith @*/ 2843dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2844dff31646SBarry Smith { 2845dff31646SBarry Smith size_t len; 2846dff31646SBarry Smith char *vstring; 2847dff31646SBarry Smith PetscErrorCode ierr; 2848dff31646SBarry Smith 28491f817a21SBarry Smith PetscFunctionBegin; 28508d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2851dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 285235005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2853dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2854dff31646SBarry Smith if (set) *set = PETSC_TRUE; 28551f817a21SBarry Smith PetscFunctionReturn(0); 2856dff31646SBarry Smith } 2857dff31646SBarry Smith 2858b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2859fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2860fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2861f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2862fe278a28SBarry Smith 2863f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2864f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2865b967cddfSBarry Smith 286604102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2867dff31646SBarry Smith 286868e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 28695dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2870d382aafbSBarry Smith 2871b2566f29SBarry Smith 2872b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2873b2566f29SBarry Smith 2874b2566f29SBarry Smith /* 2875b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2876b2566f29SBarry Smith */ 28778f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2878b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2879b2566f29SBarry Smith #else 2880b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2881b2566f29SBarry Smith #endif 2882b2566f29SBarry Smith 2883d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2884d382aafbSBarry Smith #undef __FUNCT__ 2885d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2886d382aafbSBarry Smith 2887d382aafbSBarry Smith #endif 2888