1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 24113e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 242a05e1a72SSatish Balay #include <inttypes.h> 24337354ed4SSatish Balay # if !defined(PRId64) 24437354ed4SSatish Balay # define PRId64 "ld" 24537354ed4SSatish Balay # endif 246a05e1a72SSatish Balay #endif 247fab38c73SJed Brown 24899a4b90dSDave May typedef short PetscShort; 24999a4b90dSDave May typedef char PetscChar; 25099a4b90dSDave May typedef float PetscFloat; 25199a4b90dSDave May 252d382aafbSBarry Smith /*MC 253d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2543b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 255d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 256d382aafbSBarry Smith 257*390e1bf2SBarry Smith 258*390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of 259*390e1bf2SBarry Smith the size of PetscInt 260*390e1bf2SBarry Smith 261d382aafbSBarry Smith Level: intermediate 262d382aafbSBarry Smith 263d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 264d382aafbSBarry Smith M*/ 26537354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 266bafee8b4SSatish Balay typedef int64_t PetscInt64; 267bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 268a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 269fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 270bafee8b4SSatish Balay typedef long long PetscInt64; 271bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 272a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 273f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 274bafee8b4SSatish Balay typedef __int64 PetscInt64; 275bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 276a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 277236ed0a3SSatish Balay #else 278bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 279236ed0a3SSatish Balay #endif 280d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 281bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 282bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 283a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 284d382aafbSBarry Smith #else 285d382aafbSBarry Smith typedef int PetscInt; 286d382aafbSBarry Smith #define MPIU_INT MPI_INT 287a05e1a72SSatish Balay #define PetscInt_FMT "d" 288d382aafbSBarry Smith #endif 289d382aafbSBarry Smith 290702bc34aSSatish Balay /*MC 291702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 292702bc34aSSatish Balay 293702bc34aSSatish Balay Level: intermediate 294702bc34aSSatish Balay 295702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 296702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 297702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 298702bc34aSSatish Balay 299c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3002981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 301702bc34aSSatish Balay 3022981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 303702bc34aSSatish Balay if you run ./configure with the option 304702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3052981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3062981ebdbSBarry Smith 307*390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 308*390e1bf2SBarry Smith --known-64-bit-blas-indices 309*390e1bf2SBarry Smith 310*390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 311*390e1bf2SBarry Smith will build a 64 bit integer version 3122981ebdbSBarry Smith 3132981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 314702bc34aSSatish Balay 315702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 316702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 317702bc34aSSatish Balay 3181cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 319702bc34aSSatish Balay 320702bc34aSSatish Balay M*/ 321702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 322bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 323702bc34aSSatish Balay #else 324702bc34aSSatish Balay typedef int PetscBLASInt; 325702bc34aSSatish Balay #endif 326702bc34aSSatish Balay 327503cfb0cSBarry Smith /* 328503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 329503cfb0cSBarry Smith */ 330d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 331adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 332d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 333adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 334d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 335adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 336d382aafbSBarry Smith #else 337d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 338d382aafbSBarry Smith #endif 339d382aafbSBarry Smith 340d382aafbSBarry Smith /* 341d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 342d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 343d382aafbSBarry Smith */ 344014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 345d382aafbSBarry Smith 346d382aafbSBarry Smith /* 347d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 348d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 349d382aafbSBarry Smith */ 350014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 351d382aafbSBarry Smith 352d382aafbSBarry Smith /*MC 353d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 354d382aafbSBarry Smith 355d382aafbSBarry Smith Synopsis: 356aaa7dc30SBarry Smith #include <petscsys.h> 357ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 358d382aafbSBarry Smith 359eca87e8dSBarry Smith Not Collective 360eca87e8dSBarry Smith 361d382aafbSBarry Smith Input Parameters: 362d382aafbSBarry Smith . cond - condition or expression 363d382aafbSBarry Smith 364d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 365d382aafbSBarry Smith branch is unlikely. 366d382aafbSBarry Smith 367d382aafbSBarry Smith Level: advanced 368d382aafbSBarry Smith 369d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 370d382aafbSBarry Smith M*/ 371d382aafbSBarry Smith 372d382aafbSBarry Smith /*MC 373d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 374d382aafbSBarry Smith 375d382aafbSBarry Smith Synopsis: 376aaa7dc30SBarry Smith #include <petscsys.h> 377ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 378d382aafbSBarry Smith 379eca87e8dSBarry Smith Not Collective 380eca87e8dSBarry Smith 381d382aafbSBarry Smith Input Parameters: 382d382aafbSBarry Smith . cond - condition or expression 383d382aafbSBarry Smith 384d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 385d382aafbSBarry Smith branch is likely. 386d382aafbSBarry Smith 387d382aafbSBarry Smith Level: advanced 388d382aafbSBarry Smith 389d382aafbSBarry Smith .seealso: PetscUnlikely() 390d382aafbSBarry Smith M*/ 391d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 392d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 393d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 394d382aafbSBarry Smith #else 395cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 396cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 397d382aafbSBarry Smith #endif 398d382aafbSBarry Smith 399d382aafbSBarry Smith /* 400d382aafbSBarry Smith Declare extern C stuff after including external header files 401d382aafbSBarry Smith */ 402d382aafbSBarry Smith 403d382aafbSBarry Smith 404d382aafbSBarry Smith /* 405d382aafbSBarry Smith Basic PETSc constants 406d382aafbSBarry Smith */ 407d382aafbSBarry Smith 408d382aafbSBarry Smith /*E 409ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 410d382aafbSBarry Smith 411d382aafbSBarry Smith Level: beginner 412d382aafbSBarry Smith 413ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 41434e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41534e82e7dSBarry Smith 4161cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 417d382aafbSBarry Smith E*/ 418ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4196a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4205a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 42170b3c8c7SBarry Smith 4228b49ba18SBarry Smith /* 423*390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4248b49ba18SBarry Smith */ 4258b49ba18SBarry Smith #include <petscmath.h> 4268b49ba18SBarry Smith 42770b3c8c7SBarry Smith /*E 42870b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 42970b3c8c7SBarry Smith 43070b3c8c7SBarry Smith Level: beginner 43170b3c8c7SBarry Smith 43270b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 43370b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 43470b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 43570b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43670b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 43770b3c8c7SBarry Smith 43870b3c8c7SBarry Smith E*/ 43970b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4406a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 441d382aafbSBarry Smith 442d382aafbSBarry Smith /*MC 443ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 444d382aafbSBarry Smith 445d382aafbSBarry Smith Level: beginner 446d382aafbSBarry Smith 447d382aafbSBarry Smith Note: Zero integer 448d382aafbSBarry Smith 449ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 450d382aafbSBarry Smith M*/ 451d382aafbSBarry Smith 452d382aafbSBarry Smith /*MC 453ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 454d382aafbSBarry Smith 455d382aafbSBarry Smith Level: beginner 456d382aafbSBarry Smith 457d382aafbSBarry Smith Note: Nonzero integer 458d382aafbSBarry Smith 459ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 460d382aafbSBarry Smith M*/ 461d382aafbSBarry Smith 462d382aafbSBarry Smith /*MC 4630298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 464d382aafbSBarry Smith 465d382aafbSBarry Smith Level: beginner 466d382aafbSBarry Smith 467d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 468d382aafbSBarry Smith some default 469d382aafbSBarry Smith 470d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 471d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 472d382aafbSBarry Smith 473d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 474d382aafbSBarry Smith 475d382aafbSBarry Smith M*/ 4760298fd71SBarry Smith #define PETSC_IGNORE NULL 477d382aafbSBarry Smith 478d382aafbSBarry Smith /*MC 479557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 480557d4da8SBarry Smith where you wish PETSc to use the default. 481557d4da8SBarry Smith 482557d4da8SBarry Smith Level: beginner 483557d4da8SBarry Smith 484557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 485557d4da8SBarry Smith 486557d4da8SBarry Smith M*/ 487557d4da8SBarry Smith #define PETSC_DECIDE -1 488557d4da8SBarry Smith 489557d4da8SBarry Smith /*MC 490d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 491d382aafbSBarry Smith where you wish PETSc to compute the required value. 492d382aafbSBarry Smith 493d382aafbSBarry Smith Level: beginner 494d382aafbSBarry Smith 495557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 496557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 497557d4da8SBarry Smith 4980298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 499d382aafbSBarry Smith 500d382aafbSBarry Smith M*/ 501d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 502d382aafbSBarry Smith 503d382aafbSBarry Smith /*MC 504557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 505557d4da8SBarry Smith where you wish PETSc to use the default. 506557d4da8SBarry Smith 507557d4da8SBarry Smith Level: beginner 508557d4da8SBarry Smith 5092d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 510557d4da8SBarry Smith 5110298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 512557d4da8SBarry Smith 513557d4da8SBarry Smith M*/ 514557d4da8SBarry Smith #define PETSC_DEFAULT -2 515557d4da8SBarry Smith 516557d4da8SBarry Smith /*MC 517d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 518d382aafbSBarry Smith all the processs that PETSc knows about. 519d382aafbSBarry Smith 520d382aafbSBarry Smith Level: beginner 521d382aafbSBarry Smith 522d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 523d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 524d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 525a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 526a990b902SBarry Smith 527a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 528a990b902SBarry Smith is called because it may not have a valid value yet. 529d382aafbSBarry Smith 530d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 531d382aafbSBarry Smith 532d382aafbSBarry Smith M*/ 533014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 534d382aafbSBarry Smith 535d382aafbSBarry Smith /*MC 536503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 537d382aafbSBarry Smith 538d382aafbSBarry Smith Level: beginner 539d382aafbSBarry Smith 540a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 541a990b902SBarry Smith 542d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 543d382aafbSBarry Smith 544d382aafbSBarry Smith M*/ 545d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 546d382aafbSBarry Smith 547d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 548014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 549014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 550014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5514cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 55282f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 553d382aafbSBarry Smith 554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 555014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 557d382aafbSBarry Smith 558d382aafbSBarry Smith /*MC 55995dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 560d382aafbSBarry Smith 561eca87e8dSBarry Smith Synopsis: 562aaa7dc30SBarry Smith #include <petscsys.h> 563eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 564eca87e8dSBarry Smith 565eca87e8dSBarry Smith Not Collective 566eca87e8dSBarry Smith 567d382aafbSBarry Smith Input Parameter: 568d382aafbSBarry Smith . m - number of bytes to allocate 569d382aafbSBarry Smith 570d382aafbSBarry Smith Output Parameter: 571d382aafbSBarry Smith . result - memory allocated 572d382aafbSBarry Smith 573d382aafbSBarry Smith Level: beginner 574d382aafbSBarry Smith 57549d7da52SJed Brown Notes: 57649d7da52SJed Brown Memory is always allocated at least double aligned 577d382aafbSBarry Smith 57849d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 579d382aafbSBarry Smith 580d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 581d382aafbSBarry Smith 582d382aafbSBarry Smith Concepts: memory allocation 583d382aafbSBarry Smith 584d382aafbSBarry Smith M*/ 58549d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 586d382aafbSBarry Smith 587d382aafbSBarry Smith /*MC 5883221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 5893221ece2SMatthew G. Knepley 5903221ece2SMatthew G. Knepley Synopsis: 5913221ece2SMatthew G. Knepley #include <petscsys.h> 5923221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 5933221ece2SMatthew G. Knepley 5943221ece2SMatthew G. Knepley Not Collective 5953221ece2SMatthew G. Knepley 5963221ece2SMatthew G. Knepley Input Parameters: 5973221ece2SMatthew G. Knepley + m - number of bytes to allocate 5983221ece2SMatthew G. Knepley - result - initial memory allocated 5993221ece2SMatthew G. Knepley 6003221ece2SMatthew G. Knepley Output Parameter: 6013221ece2SMatthew G. Knepley . result - new memory allocated 6023221ece2SMatthew G. Knepley 6033221ece2SMatthew G. Knepley Level: developer 6043221ece2SMatthew G. Knepley 6053221ece2SMatthew G. Knepley Notes: 6063221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6073221ece2SMatthew G. Knepley 6083221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6093221ece2SMatthew G. Knepley 6103221ece2SMatthew G. Knepley Concepts: memory allocation 6113221ece2SMatthew G. Knepley 6123221ece2SMatthew G. Knepley M*/ 6133221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6143221ece2SMatthew G. Knepley 6153221ece2SMatthew G. Knepley /*MC 616503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 617d382aafbSBarry Smith 618d382aafbSBarry Smith Synopsis: 619aaa7dc30SBarry Smith #include <petscsys.h> 620d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 621d382aafbSBarry Smith 622eca87e8dSBarry Smith Not Collective 623eca87e8dSBarry Smith 624eca87e8dSBarry Smith Input Parameters: 625eca87e8dSBarry Smith . addr - address to align (any pointer type) 626eca87e8dSBarry Smith 627d382aafbSBarry Smith Level: developer 628d382aafbSBarry Smith 629d382aafbSBarry Smith .seealso: PetscMallocAlign() 630d382aafbSBarry Smith 631d382aafbSBarry Smith Concepts: memory allocation 632d382aafbSBarry Smith M*/ 633d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 634d382aafbSBarry Smith 635d382aafbSBarry Smith /*MC 636785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 637d382aafbSBarry Smith 638eca87e8dSBarry Smith Synopsis: 639aaa7dc30SBarry Smith #include <petscsys.h> 640785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 641785e854fSJed Brown 642785e854fSJed Brown Not Collective 643785e854fSJed Brown 644785e854fSJed Brown Input Parameter: 645*390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 646785e854fSJed Brown 647785e854fSJed Brown Output Parameter: 648785e854fSJed Brown . r1 - memory allocated in first chunk 649785e854fSJed Brown 650*390e1bf2SBarry Smith Note: This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 651*390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 652*390e1bf2SBarry Smith $ PetscInt *id; 653*390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 654*390e1bf2SBarry Smith not 655*390e1bf2SBarry Smith $ PetscInt *id; 656*390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 657*390e1bf2SBarry Smith 658*390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 659*390e1bf2SBarry Smith 660*390e1bf2SBarry Smith Level: beginner 661785e854fSJed Brown 6621795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 663785e854fSJed Brown 664785e854fSJed Brown Concepts: memory allocation 665785e854fSJed Brown 666785e854fSJed Brown M*/ 667f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 668785e854fSJed Brown 669785e854fSJed Brown /*MC 6701795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6711795a4d1SJed Brown 6721795a4d1SJed Brown Synopsis: 673aaa7dc30SBarry Smith #include <petscsys.h> 6741795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6751795a4d1SJed Brown 6761795a4d1SJed Brown Not Collective 6771795a4d1SJed Brown 6781795a4d1SJed Brown Input Parameter: 6791795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6801795a4d1SJed Brown 6811795a4d1SJed Brown Output Parameter: 6821795a4d1SJed Brown . r1 - memory allocated in first chunk 6831795a4d1SJed Brown 684*390e1bf2SBarry Smith Notes: see PetsMalloc1() for more details on usage. 685*390e1bf2SBarry Smith 686*390e1bf2SBarry Smith Level: beginner 6871795a4d1SJed Brown 6881795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6891795a4d1SJed Brown 6901795a4d1SJed Brown Concepts: memory allocation 6911795a4d1SJed Brown 6921795a4d1SJed Brown M*/ 6931795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6941795a4d1SJed Brown 6951795a4d1SJed Brown /*MC 696dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 697d382aafbSBarry Smith 698eca87e8dSBarry Smith Synopsis: 699aaa7dc30SBarry Smith #include <petscsys.h> 700dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 701eca87e8dSBarry Smith 702eca87e8dSBarry Smith Not Collective 703eca87e8dSBarry Smith 704d382aafbSBarry Smith Input Parameter: 705d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 706dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 707d382aafbSBarry Smith 708d382aafbSBarry Smith Output Parameter: 709d382aafbSBarry Smith + r1 - memory allocated in first chunk 710d382aafbSBarry Smith - r2 - memory allocated in second chunk 711d382aafbSBarry Smith 712d382aafbSBarry Smith Level: developer 713d382aafbSBarry Smith 7141795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 715d382aafbSBarry Smith 716d382aafbSBarry Smith Concepts: memory allocation 717d382aafbSBarry Smith 718d382aafbSBarry Smith M*/ 71920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7201d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 721d382aafbSBarry Smith #else 722ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 723ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 7243589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 725d382aafbSBarry Smith #endif 726d382aafbSBarry Smith 727d382aafbSBarry Smith /*MC 7281795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 729d382aafbSBarry Smith 730eca87e8dSBarry Smith Synopsis: 731aaa7dc30SBarry Smith #include <petscsys.h> 7321795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 733eca87e8dSBarry Smith 734eca87e8dSBarry Smith Not Collective 735eca87e8dSBarry Smith 736d382aafbSBarry Smith Input Parameter: 737d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7381795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7391795a4d1SJed Brown 7401795a4d1SJed Brown Output Parameter: 7411795a4d1SJed Brown + r1 - memory allocated in first chunk 7421795a4d1SJed Brown - r2 - memory allocated in second chunk 7431795a4d1SJed Brown 7441795a4d1SJed Brown Level: developer 7451795a4d1SJed Brown 7461795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7471795a4d1SJed Brown 7481795a4d1SJed Brown Concepts: memory allocation 7491795a4d1SJed Brown M*/ 7501795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7511795a4d1SJed Brown 7521795a4d1SJed Brown /*MC 753dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 754d382aafbSBarry Smith 755d382aafbSBarry Smith Synopsis: 756aaa7dc30SBarry Smith #include <petscsys.h> 757dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 758d382aafbSBarry Smith 759d382aafbSBarry Smith Not Collective 760d382aafbSBarry Smith 761d382aafbSBarry Smith Input Parameter: 762d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 763d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 764dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 765d382aafbSBarry Smith 766d382aafbSBarry Smith Output Parameter: 767d382aafbSBarry Smith + r1 - memory allocated in first chunk 768d382aafbSBarry Smith . r2 - memory allocated in second chunk 769d382aafbSBarry Smith - r3 - memory allocated in third chunk 770d382aafbSBarry Smith 771d382aafbSBarry Smith Level: developer 772d382aafbSBarry Smith 7731795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 774d382aafbSBarry Smith 775d382aafbSBarry Smith Concepts: memory allocation 776d382aafbSBarry Smith 777d382aafbSBarry Smith M*/ 77820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7791d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 780d382aafbSBarry Smith #else 781ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 782278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7833589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 784d382aafbSBarry Smith #endif 785d382aafbSBarry Smith 786d382aafbSBarry Smith /*MC 7871795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 788d382aafbSBarry Smith 789eca87e8dSBarry Smith Synopsis: 790aaa7dc30SBarry Smith #include <petscsys.h> 7911795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 792eca87e8dSBarry Smith 793eca87e8dSBarry Smith Not Collective 794eca87e8dSBarry Smith 795d382aafbSBarry Smith Input Parameter: 796d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 797d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7981795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7991795a4d1SJed Brown 8001795a4d1SJed Brown Output Parameter: 8011795a4d1SJed Brown + r1 - memory allocated in first chunk 8021795a4d1SJed Brown . r2 - memory allocated in second chunk 8031795a4d1SJed Brown - r3 - memory allocated in third chunk 8041795a4d1SJed Brown 8051795a4d1SJed Brown Level: developer 8061795a4d1SJed Brown 8071795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8081795a4d1SJed Brown 8091795a4d1SJed Brown Concepts: memory allocation 8101795a4d1SJed Brown M*/ 8111795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 8121795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 8131795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 8141795a4d1SJed Brown 8151795a4d1SJed Brown /*MC 816dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 817d382aafbSBarry Smith 818d382aafbSBarry Smith Synopsis: 819aaa7dc30SBarry Smith #include <petscsys.h> 820dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 821d382aafbSBarry Smith 822d382aafbSBarry Smith Not Collective 823d382aafbSBarry Smith 824d382aafbSBarry Smith Input Parameter: 825d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 826d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 827d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 828dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 829d382aafbSBarry Smith 830d382aafbSBarry Smith Output Parameter: 831d382aafbSBarry Smith + r1 - memory allocated in first chunk 832d382aafbSBarry Smith . r2 - memory allocated in second chunk 833d382aafbSBarry Smith . r3 - memory allocated in third chunk 834d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 835d382aafbSBarry Smith 836d382aafbSBarry Smith Level: developer 837d382aafbSBarry Smith 8381795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 839d382aafbSBarry Smith 840d382aafbSBarry Smith Concepts: memory allocation 841d382aafbSBarry Smith 842d382aafbSBarry Smith M*/ 84320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8441d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 845d382aafbSBarry Smith #else 846dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 847ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 848278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8493589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 850d382aafbSBarry Smith #endif 851d382aafbSBarry Smith 852d382aafbSBarry Smith /*MC 8531795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 854d382aafbSBarry Smith 855eca87e8dSBarry Smith Synopsis: 856aaa7dc30SBarry Smith #include <petscsys.h> 8571795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 858eca87e8dSBarry Smith 859eca87e8dSBarry Smith Not Collective 860eca87e8dSBarry Smith 861d382aafbSBarry Smith Input Parameter: 862d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 863d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 864d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8651795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8661795a4d1SJed Brown 8671795a4d1SJed Brown Output Parameter: 8681795a4d1SJed Brown + r1 - memory allocated in first chunk 8691795a4d1SJed Brown . r2 - memory allocated in second chunk 8701795a4d1SJed Brown . r3 - memory allocated in third chunk 8711795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8721795a4d1SJed Brown 8731795a4d1SJed Brown Level: developer 8741795a4d1SJed Brown 8751795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8761795a4d1SJed Brown 8771795a4d1SJed Brown Concepts: memory allocation 8781795a4d1SJed Brown 8791795a4d1SJed Brown M*/ 8801795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8811795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8821795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8831795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8841795a4d1SJed Brown 8851795a4d1SJed Brown /*MC 886dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 887d382aafbSBarry Smith 888d382aafbSBarry Smith Synopsis: 889aaa7dc30SBarry Smith #include <petscsys.h> 890dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 891d382aafbSBarry Smith 892d382aafbSBarry Smith Not Collective 893d382aafbSBarry Smith 894d382aafbSBarry Smith Input Parameter: 895d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 896d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 897d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 898d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 899dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 900d382aafbSBarry Smith 901d382aafbSBarry Smith Output Parameter: 902d382aafbSBarry Smith + r1 - memory allocated in first chunk 903d382aafbSBarry Smith . r2 - memory allocated in second chunk 904d382aafbSBarry Smith . r3 - memory allocated in third chunk 905d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 906d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 907d382aafbSBarry Smith 908d382aafbSBarry Smith Level: developer 909d382aafbSBarry Smith 9101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 911d382aafbSBarry Smith 912d382aafbSBarry Smith Concepts: memory allocation 913d382aafbSBarry Smith 914d382aafbSBarry Smith M*/ 91520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9161d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 917d382aafbSBarry Smith #else 918dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 919ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 920278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 9213589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 922d382aafbSBarry Smith #endif 923d382aafbSBarry Smith 924d382aafbSBarry Smith /*MC 9251795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 926d382aafbSBarry Smith 927eca87e8dSBarry Smith Synopsis: 928aaa7dc30SBarry Smith #include <petscsys.h> 9291795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 930eca87e8dSBarry Smith 931eca87e8dSBarry Smith Not Collective 932eca87e8dSBarry Smith 933d382aafbSBarry Smith Input Parameter: 934d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 935d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 936d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 937d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9381795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9391795a4d1SJed Brown 9401795a4d1SJed Brown Output Parameter: 9411795a4d1SJed Brown + r1 - memory allocated in first chunk 9421795a4d1SJed Brown . r2 - memory allocated in second chunk 9431795a4d1SJed Brown . r3 - memory allocated in third chunk 9441795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9451795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9461795a4d1SJed Brown 9471795a4d1SJed Brown Level: developer 9481795a4d1SJed Brown 9491795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9501795a4d1SJed Brown 9511795a4d1SJed Brown Concepts: memory allocation 9521795a4d1SJed Brown 9531795a4d1SJed Brown M*/ 9541795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9551795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9561795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9571795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 958d382aafbSBarry Smith 959d382aafbSBarry Smith /*MC 960dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 961d382aafbSBarry Smith 962d382aafbSBarry Smith Synopsis: 963aaa7dc30SBarry Smith #include <petscsys.h> 964dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 965d382aafbSBarry Smith 966d382aafbSBarry Smith Not Collective 967d382aafbSBarry Smith 968d382aafbSBarry Smith Input Parameter: 969d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 970d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 971d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 972d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 973d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 974dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 975d382aafbSBarry Smith 976d382aafbSBarry Smith Output Parameter: 977d382aafbSBarry Smith + r1 - memory allocated in first chunk 978d382aafbSBarry Smith . r2 - memory allocated in second chunk 979d382aafbSBarry Smith . r3 - memory allocated in third chunk 980d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 981d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 982d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 983d382aafbSBarry Smith 984d382aafbSBarry Smith Level: developer 985d382aafbSBarry Smith 9861795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 987d382aafbSBarry Smith 988d382aafbSBarry Smith Concepts: memory allocation 989d382aafbSBarry Smith 990d382aafbSBarry Smith M*/ 99120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9921d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 993d382aafbSBarry Smith #else 994dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 995ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 996278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9973589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 998d382aafbSBarry Smith #endif 999d382aafbSBarry Smith 1000d382aafbSBarry Smith /*MC 10011795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1002d382aafbSBarry Smith 1003eca87e8dSBarry Smith Synopsis: 1004aaa7dc30SBarry Smith #include <petscsys.h> 10051795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1006eca87e8dSBarry Smith 1007eca87e8dSBarry Smith Not Collective 1008eca87e8dSBarry Smith 1009d382aafbSBarry Smith Input Parameter: 1010d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1011d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1012d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1013d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1014d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10151795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10161795a4d1SJed Brown 10171795a4d1SJed Brown Output Parameter: 10181795a4d1SJed Brown + r1 - memory allocated in first chunk 10191795a4d1SJed Brown . r2 - memory allocated in second chunk 10201795a4d1SJed Brown . r3 - memory allocated in third chunk 10211795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10221795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10231795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10241795a4d1SJed Brown 10251795a4d1SJed Brown Level: developer 10261795a4d1SJed Brown 10271795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10281795a4d1SJed Brown 10291795a4d1SJed Brown Concepts: memory allocation 10301795a4d1SJed Brown M*/ 10311795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10321795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10331795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10341795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10351795a4d1SJed Brown 10361795a4d1SJed Brown /*MC 1037dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1038d382aafbSBarry Smith 1039d382aafbSBarry Smith Synopsis: 1040aaa7dc30SBarry Smith #include <petscsys.h> 1041dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1042d382aafbSBarry Smith 1043d382aafbSBarry Smith Not Collective 1044d382aafbSBarry Smith 1045d382aafbSBarry Smith Input Parameter: 1046d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1047d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1048d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1049d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1050d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1051d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1052dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1053d382aafbSBarry Smith 1054d382aafbSBarry Smith Output Parameter: 1055d382aafbSBarry Smith + r1 - memory allocated in first chunk 1056d382aafbSBarry Smith . r2 - memory allocated in second chunk 1057d382aafbSBarry Smith . r3 - memory allocated in third chunk 1058d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1059d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1060d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1061eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1062d382aafbSBarry Smith 1063d382aafbSBarry Smith Level: developer 1064d382aafbSBarry Smith 10651795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1066d382aafbSBarry Smith 1067d382aafbSBarry Smith Concepts: memory allocation 1068d382aafbSBarry Smith 1069d382aafbSBarry Smith M*/ 107020a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10711d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1072d382aafbSBarry Smith #else 1073dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1074ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1075278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10763589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1077d382aafbSBarry Smith #endif 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith /*MC 10801795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10811795a4d1SJed Brown 10821795a4d1SJed Brown Synopsis: 1083aaa7dc30SBarry Smith #include <petscsys.h> 10841795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10851795a4d1SJed Brown 10861795a4d1SJed Brown Not Collective 10871795a4d1SJed Brown 10881795a4d1SJed Brown Input Parameter: 10891795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10901795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10911795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10921795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10931795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10941795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10951795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10961795a4d1SJed Brown 10971795a4d1SJed Brown Output Parameter: 10981795a4d1SJed Brown + r1 - memory allocated in first chunk 10991795a4d1SJed Brown . r2 - memory allocated in second chunk 11001795a4d1SJed Brown . r3 - memory allocated in third chunk 11011795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11021795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11031795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11041795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11051795a4d1SJed Brown 11061795a4d1SJed Brown Level: developer 11071795a4d1SJed Brown 11081795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11091795a4d1SJed Brown 11101795a4d1SJed Brown Concepts: memory allocation 11111795a4d1SJed Brown M*/ 11121795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11137ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11141795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 11151795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 11167ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 11171795a4d1SJed Brown 11181795a4d1SJed Brown /*MC 1119503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1120d382aafbSBarry Smith 1121eca87e8dSBarry Smith Synopsis: 1122aaa7dc30SBarry Smith #include <petscsys.h> 1123b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1124eca87e8dSBarry Smith 1125eca87e8dSBarry Smith Not Collective 1126eca87e8dSBarry Smith 1127d382aafbSBarry Smith Output Parameter: 1128b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1129d382aafbSBarry Smith 1130d382aafbSBarry Smith Level: beginner 1131d382aafbSBarry Smith 1132*390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith Concepts: memory allocation 1135d382aafbSBarry Smith 1136d382aafbSBarry Smith M*/ 1137b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1138ad0619ddSBarry Smith 1139ad0619ddSBarry Smith /*MC 1140b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1141ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1142ad0619ddSBarry Smith 1143ad0619ddSBarry Smith Synopsis: 1144aaa7dc30SBarry Smith #include <petscsys.h> 1145b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1146ad0619ddSBarry Smith 1147ad0619ddSBarry Smith Not Collective 1148ad0619ddSBarry Smith 1149ad0619ddSBarry Smith Input Parameter: 1150b00a9115SJed Brown . obj - object memory is logged to 1151ad0619ddSBarry Smith 1152ad0619ddSBarry Smith Output Parameter: 1153b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1154ad0619ddSBarry Smith 1155ad0619ddSBarry Smith Level: developer 1156ad0619ddSBarry Smith 1157*390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1158ad0619ddSBarry Smith 1159ad0619ddSBarry Smith Concepts: memory allocation 1160ad0619ddSBarry Smith 1161ad0619ddSBarry Smith M*/ 1162d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1163d382aafbSBarry Smith 1164d382aafbSBarry Smith /*MC 1165d382aafbSBarry Smith PetscFree - Frees memory 1166d382aafbSBarry Smith 1167eca87e8dSBarry Smith Synopsis: 1168aaa7dc30SBarry Smith #include <petscsys.h> 1169eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1170eca87e8dSBarry Smith 1171eca87e8dSBarry Smith Not Collective 1172eca87e8dSBarry Smith 1173d382aafbSBarry Smith Input Parameter: 1174*390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1175d382aafbSBarry Smith 1176d382aafbSBarry Smith Level: beginner 1177d382aafbSBarry Smith 117849d7da52SJed Brown Notes: 1179*390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1180*390e1bf2SBarry Smith 118149d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1182d382aafbSBarry Smith 1183*390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1184d382aafbSBarry Smith 1185d382aafbSBarry Smith Concepts: memory allocation 1186d382aafbSBarry Smith 1187d382aafbSBarry Smith M*/ 118849d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith /*MC 1191d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1192d382aafbSBarry Smith 1193eca87e8dSBarry Smith Synopsis: 1194aaa7dc30SBarry Smith #include <petscsys.h> 1195eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1196eca87e8dSBarry Smith 1197eca87e8dSBarry Smith Not Collective 1198eca87e8dSBarry Smith 1199d382aafbSBarry Smith Input Parameter: 1200d382aafbSBarry Smith + memory1 - memory to free 1201d382aafbSBarry Smith - memory2 - 2nd memory to free 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith Level: developer 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1206d382aafbSBarry Smith 1207d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith Concepts: memory allocation 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith M*/ 1212b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1213d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1214d382aafbSBarry Smith #else 1215e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1216d382aafbSBarry Smith #endif 1217d382aafbSBarry Smith 1218d382aafbSBarry Smith /*MC 1219d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1220d382aafbSBarry Smith 1221eca87e8dSBarry Smith Synopsis: 1222aaa7dc30SBarry Smith #include <petscsys.h> 1223eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1224eca87e8dSBarry Smith 1225eca87e8dSBarry Smith Not Collective 1226eca87e8dSBarry Smith 1227d382aafbSBarry Smith Input Parameter: 1228d382aafbSBarry Smith + memory1 - memory to free 1229d382aafbSBarry Smith . memory2 - 2nd memory to free 1230d382aafbSBarry Smith - memory3 - 3rd memory to free 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith Level: developer 1233d382aafbSBarry Smith 1234d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1235d382aafbSBarry Smith 1236d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith Concepts: memory allocation 1239d382aafbSBarry Smith 1240d382aafbSBarry Smith M*/ 1241b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1242d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1243d382aafbSBarry Smith #else 1244e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1245d382aafbSBarry Smith #endif 1246d382aafbSBarry Smith 1247d382aafbSBarry Smith /*MC 1248d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1249d382aafbSBarry Smith 1250eca87e8dSBarry Smith Synopsis: 1251aaa7dc30SBarry Smith #include <petscsys.h> 1252eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1253eca87e8dSBarry Smith 1254eca87e8dSBarry Smith Not Collective 1255eca87e8dSBarry Smith 1256d382aafbSBarry Smith Input Parameter: 1257d382aafbSBarry Smith + m1 - memory to free 1258d382aafbSBarry Smith . m2 - 2nd memory to free 1259d382aafbSBarry Smith . m3 - 3rd memory to free 1260d382aafbSBarry Smith - m4 - 4th memory to free 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith Level: developer 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1267d382aafbSBarry Smith 1268d382aafbSBarry Smith Concepts: memory allocation 1269d382aafbSBarry Smith 1270d382aafbSBarry Smith M*/ 1271b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1272d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1273d382aafbSBarry Smith #else 1274e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1275d382aafbSBarry Smith #endif 1276d382aafbSBarry Smith 1277d382aafbSBarry Smith /*MC 1278d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1279d382aafbSBarry Smith 1280eca87e8dSBarry Smith Synopsis: 1281aaa7dc30SBarry Smith #include <petscsys.h> 1282eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1283eca87e8dSBarry Smith 1284eca87e8dSBarry Smith Not Collective 1285eca87e8dSBarry Smith 1286d382aafbSBarry Smith Input Parameter: 1287d382aafbSBarry Smith + m1 - memory to free 1288d382aafbSBarry Smith . m2 - 2nd memory to free 1289d382aafbSBarry Smith . m3 - 3rd memory to free 1290d382aafbSBarry Smith . m4 - 4th memory to free 1291d382aafbSBarry Smith - m5 - 5th memory to free 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith Level: developer 1294d382aafbSBarry Smith 1295d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1296d382aafbSBarry Smith 1297d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1298d382aafbSBarry Smith 1299d382aafbSBarry Smith Concepts: memory allocation 1300d382aafbSBarry Smith 1301d382aafbSBarry Smith M*/ 1302b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1303d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1304d382aafbSBarry Smith #else 1305e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1306e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1307d382aafbSBarry Smith #endif 1308d382aafbSBarry Smith 1309d382aafbSBarry Smith 1310d382aafbSBarry Smith /*MC 1311d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1312d382aafbSBarry Smith 1313eca87e8dSBarry Smith Synopsis: 1314aaa7dc30SBarry Smith #include <petscsys.h> 1315eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1316eca87e8dSBarry Smith 1317eca87e8dSBarry Smith Not Collective 1318eca87e8dSBarry Smith 1319d382aafbSBarry Smith Input Parameter: 1320d382aafbSBarry Smith + m1 - memory to free 1321d382aafbSBarry Smith . m2 - 2nd memory to free 1322d382aafbSBarry Smith . m3 - 3rd memory to free 1323d382aafbSBarry Smith . m4 - 4th memory to free 1324d382aafbSBarry Smith . m5 - 5th memory to free 1325d382aafbSBarry Smith - m6 - 6th memory to free 1326d382aafbSBarry Smith 1327d382aafbSBarry Smith 1328d382aafbSBarry Smith Level: developer 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1331d382aafbSBarry Smith 1332d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1333d382aafbSBarry Smith 1334d382aafbSBarry Smith Concepts: memory allocation 1335d382aafbSBarry Smith 1336d382aafbSBarry Smith M*/ 1337b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1338d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1339d382aafbSBarry Smith #else 1340e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1341e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1342e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1343d382aafbSBarry Smith #endif 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith /*MC 1346d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1347d382aafbSBarry Smith 1348eca87e8dSBarry Smith Synopsis: 1349aaa7dc30SBarry Smith #include <petscsys.h> 1350eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1351eca87e8dSBarry Smith 1352eca87e8dSBarry Smith Not Collective 1353eca87e8dSBarry Smith 1354d382aafbSBarry Smith Input Parameter: 1355d382aafbSBarry Smith + m1 - memory to free 1356d382aafbSBarry Smith . m2 - 2nd memory to free 1357d382aafbSBarry Smith . m3 - 3rd memory to free 1358d382aafbSBarry Smith . m4 - 4th memory to free 1359d382aafbSBarry Smith . m5 - 5th memory to free 1360d382aafbSBarry Smith . m6 - 6th memory to free 1361d382aafbSBarry Smith - m7 - 7th memory to free 1362d382aafbSBarry Smith 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith Level: developer 1365d382aafbSBarry Smith 1366d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1367d382aafbSBarry Smith 1368d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1369d382aafbSBarry Smith PetscMalloc7() 1370d382aafbSBarry Smith 1371d382aafbSBarry Smith Concepts: memory allocation 1372d382aafbSBarry Smith 1373d382aafbSBarry Smith M*/ 1374b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1375d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1376d382aafbSBarry Smith #else 1377e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1378e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 137906c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1380e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1381d382aafbSBarry Smith #endif 1382d382aafbSBarry Smith 1383efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1384efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13853221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1386efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1388d382aafbSBarry Smith 1389d382aafbSBarry Smith /* 1390a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1391a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1392a5057860SBarry Smith timing etc. 1393a5057860SBarry Smith */ 1394a5057860SBarry Smith typedef double PetscLogDouble; 1395a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1396a5057860SBarry Smith 1397a5057860SBarry Smith /* 139866d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1399d382aafbSBarry Smith */ 1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 14050acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1406efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1408574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1410d382aafbSBarry Smith 1411d382aafbSBarry Smith /*E 1412d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1413d382aafbSBarry Smith 1414d382aafbSBarry Smith Level: beginner 1415d382aafbSBarry Smith 1416d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1417d382aafbSBarry Smith 1418d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1419d382aafbSBarry Smith PetscDataTypeGetSize() 1420d382aafbSBarry Smith 1421d382aafbSBarry Smith E*/ 1422d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1423570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14246a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1425d382aafbSBarry Smith 1426d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1427d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1428d382aafbSBarry Smith #else 1429ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1430d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 143159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 143259a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1433570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1434570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1435d382aafbSBarry Smith #else 1436d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1437d382aafbSBarry Smith #endif 1438d382aafbSBarry Smith #endif 1439ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1440d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 144159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 144259a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1443570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1444570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1445d382aafbSBarry Smith #else 1446d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1447d382aafbSBarry Smith #endif 1448d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1449d382aafbSBarry Smith 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14538e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1454d382aafbSBarry Smith 1455d382aafbSBarry Smith /* 1456d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1457d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1458d382aafbSBarry Smith functionality and/or error checking. 1459d382aafbSBarry Smith */ 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1464d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14762f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1479014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1480014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14812c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 148447340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14856fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14866991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14876991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1488014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1489d382aafbSBarry Smith 1490573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1491573b0fb4SBarry Smith 1492d382aafbSBarry Smith /*S 1493d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1494d382aafbSBarry Smith 1495d382aafbSBarry Smith Level: intermediate 1496d382aafbSBarry Smith 1497d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1498d382aafbSBarry Smith S*/ 1499d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1500d382aafbSBarry Smith 1501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1502014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1504d382aafbSBarry Smith 1505a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1506a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1507a53986e1SJed Brown 1508d382aafbSBarry Smith /* 1509d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1510d382aafbSBarry Smith */ 1511367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1512570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1513014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15142414b3c7SJed Brown #else 15152414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15162414b3c7SJed Brown #endif 1517570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1518014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1519014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1520d9822059SBarry Smith #else 1521d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1522d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1523d9822059SBarry Smith #endif 1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1525d382aafbSBarry Smith 1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1528eb3f98d2SBarry Smith 1529d382aafbSBarry Smith /*S 1530d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1531d382aafbSBarry Smith 1532d382aafbSBarry Smith Level: beginner 1533d382aafbSBarry Smith 15342981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1535d382aafbSBarry Smith 15362b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1537d382aafbSBarry Smith S*/ 1538d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1539d382aafbSBarry Smith 1540270bf2e7SJed Brown /*MC 1541127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1542127c8a3bSJed Brown 1543127c8a3bSJed Brown Level: developer 1544127c8a3bSJed Brown 1545127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1546127c8a3bSJed Brown 1547127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1548127c8a3bSJed Brown M*/ 154906e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 155006e41213SSatish Balay typedef int PetscObjectId; 155106e41213SSatish Balay #else 1552bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 155306e41213SSatish Balay #endif 1554127c8a3bSJed Brown 1555127c8a3bSJed Brown /*MC 1556270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1557270bf2e7SJed Brown 1558270bf2e7SJed Brown Level: developer 1559270bf2e7SJed Brown 1560270bf2e7SJed Brown Notes: 1561270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1562270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1563270bf2e7SJed Brown 15648dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1565270bf2e7SJed Brown M*/ 156606e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 156706e41213SSatish Balay typedef int PetscObjectState; 156806e41213SSatish Balay #else 1569bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 157006e41213SSatish Balay #endif 1571270bf2e7SJed Brown 1572d382aafbSBarry Smith /*S 1573140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1574d382aafbSBarry Smith by string name 1575d382aafbSBarry Smith 1576d382aafbSBarry Smith Level: advanced 1577d382aafbSBarry Smith 1578140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1579d382aafbSBarry Smith S*/ 1580140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1581d382aafbSBarry Smith 1582d382aafbSBarry Smith /*E 1583d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1584d382aafbSBarry Smith 1585d382aafbSBarry Smith Level: beginner 1586d382aafbSBarry Smith 15871cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15881cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15891cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15901cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15911cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1592d382aafbSBarry Smith 1593d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1594d382aafbSBarry Smith E*/ 1595d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1596d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1597d6a4318aSJed Brown 1598639ff905SBarry Smith /* 1599639ff905SBarry Smith Defines PETSc error handling. 1600639ff905SBarry Smith */ 1601639ff905SBarry Smith #include <petscerror.h> 1602d382aafbSBarry Smith 16030700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1604014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1605014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1607d382aafbSBarry Smith 1608d382aafbSBarry Smith /* 1609d382aafbSBarry Smith Routines that get memory usage information from the OS 1610d382aafbSBarry Smith */ 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1614b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1615d382aafbSBarry Smith 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1618d382aafbSBarry Smith 1619d382aafbSBarry Smith /* 1620d382aafbSBarry Smith Initialization of PETSc 1621d382aafbSBarry Smith */ 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1632d382aafbSBarry Smith 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1634607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1635d382aafbSBarry Smith 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1640d382aafbSBarry Smith 1641d382aafbSBarry Smith /* 1642d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16432981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1644d382aafbSBarry Smith */ 1645638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1646638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1647638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1648d382aafbSBarry Smith 1649d382aafbSBarry Smith /* 1650d382aafbSBarry Smith Functions that can act on any PETSc object. 1651d382aafbSBarry Smith */ 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1670bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1671bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16740eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16750eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1677d382aafbSBarry Smith 1678665c2dedSJed Brown #include <petscviewertypes.h> 1679639ff905SBarry Smith #include <petscoptions.h> 1680639ff905SBarry Smith 16810633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16820633abcbSJed Brown 1683639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1684c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1685dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1686639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16870005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16880005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1696685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1698014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1702d382aafbSBarry Smith 1703e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 17047aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1705e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1706e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1707e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1708e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1709e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1710e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1711e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1712e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1713e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 171415681b3cSBarry Smith 1715ec7429eaSBarry Smith #else 17167aab2a10SBarry Smith #define PetscSAWsBlock() 0 1717e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1718e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1719e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1720e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1721e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1722e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1723e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1724e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1725e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 172615681b3cSBarry Smith 1727ec7429eaSBarry Smith #endif 1728b90c6cbeSBarry Smith 17297d5d4d99SBarry Smith typedef void* PetscDLHandle; 1730e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 173182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 173282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 173382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17347d5d4d99SBarry Smith 17355fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1736a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17375fe58b6fSBarry Smith #endif 17387eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1739a64a8e02SBarry Smith 1740d382aafbSBarry Smith /*S 1741140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1742d382aafbSBarry Smith 17431d0fab5eSBarry Smith Level: developer 1744d382aafbSBarry Smith 17451d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17461d0fab5eSBarry Smith 1747140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1748d382aafbSBarry Smith S*/ 1749140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1750d382aafbSBarry Smith 1751140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1752140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1753140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1754140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1755140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1756140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1757d382aafbSBarry Smith 1758d382aafbSBarry Smith /* 1759503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1760d382aafbSBarry Smith link libraries that will be loaded as needed. 1761d382aafbSBarry Smith */ 1762a240a19fSJed Brown 1763a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1764a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1765140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17661c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17671c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1768140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1769140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1770140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1771140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1772d382aafbSBarry Smith 1773d382aafbSBarry Smith /*S 1774d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1775d382aafbSBarry Smith 1776d382aafbSBarry Smith Level: advanced 1777d382aafbSBarry Smith 1778d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1779d382aafbSBarry Smith S*/ 1780d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1781014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1789d382aafbSBarry Smith 1790d382aafbSBarry Smith /* 1791d382aafbSBarry Smith Useful utility routines 1792d382aafbSBarry Smith */ 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1799d382aafbSBarry Smith 1800503cfb0cSBarry Smith /* 1801ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1802503cfb0cSBarry Smith 1803503cfb0cSBarry Smith Notes: This is useful in cases like 1804503cfb0cSBarry Smith $ int *a; 1805ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 18061cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1807503cfb0cSBarry Smith */ 1808d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1809503cfb0cSBarry Smith 1810d382aafbSBarry Smith /*MC 1811d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1812d382aafbSBarry Smith 1813d382aafbSBarry Smith Synopsis: 1814aaa7dc30SBarry Smith #include <petscsys.h> 1815d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1816d382aafbSBarry Smith 1817eca87e8dSBarry Smith Not Collective 1818eca87e8dSBarry Smith 1819d382aafbSBarry Smith Input Parameters: 1820d382aafbSBarry Smith . format - the usual printf() format string 1821d382aafbSBarry Smith 1822d382aafbSBarry Smith Level: developer 1823d382aafbSBarry Smith 1824d382aafbSBarry Smith Fortran Note: 1825d382aafbSBarry Smith This routine is not supported in Fortran. 1826d382aafbSBarry Smith 1827d382aafbSBarry Smith Concepts: help messages^printing 1828d382aafbSBarry Smith Concepts: printing^help messages 1829d382aafbSBarry Smith 1830d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1831d382aafbSBarry Smith M*/ 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1833d382aafbSBarry Smith 1834fcfd50ebSBarry Smith /* 1835fcfd50ebSBarry Smith Defines PETSc profiling. 1836fcfd50ebSBarry Smith */ 18372c8e378dSBarry Smith #include <petsclog.h> 1838fcfd50ebSBarry Smith 1839fcfd50ebSBarry Smith /* 1840fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1841fcfd50ebSBarry Smith */ 1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1849fcfd50ebSBarry Smith 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1853d382aafbSBarry Smith 1854d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 185696a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 185774ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1858d382aafbSBarry Smith #endif 1859d382aafbSBarry Smith 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18620ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1867d382aafbSBarry Smith 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1869d382aafbSBarry Smith 1870d382aafbSBarry Smith /*S 1871d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith Level: advanced 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1876d382aafbSBarry Smith S*/ 1877014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1878d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1881014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1882014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1883014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1884d382aafbSBarry Smith 1885d382aafbSBarry Smith /* 1886d382aafbSBarry Smith For use in debuggers 1887d382aafbSBarry Smith */ 1888014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1889014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1890014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1891014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1892014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1893d382aafbSBarry Smith 1894a663daf8SBarry Smith #include <stddef.h> 1895a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1896d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1897d382aafbSBarry Smith #include <stdlib.h> 1898d382aafbSBarry Smith #endif 18996c7e564aSBarry Smith 19004a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1901d382aafbSBarry Smith #include <xmmintrin.h> 1902d382aafbSBarry Smith #endif 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith /*@C 1905d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1906d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1907d382aafbSBarry Smith PetscMemmove() in that case. 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith Not Collective 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith Input Parameters: 1912d382aafbSBarry Smith + b - pointer to initial memory space 1913d382aafbSBarry Smith - n - length (in bytes) of space to copy 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith Output Parameter: 1916d382aafbSBarry Smith . a - pointer to copy space 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith Level: intermediate 1919d382aafbSBarry Smith 1920d382aafbSBarry Smith Compile Option: 1921d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1922d382aafbSBarry Smith for memory copies on double precision values. 1923d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1924d382aafbSBarry Smith for memory copies on double precision values. 1925d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1926d382aafbSBarry Smith for memory copies on double precision values. 1927d382aafbSBarry Smith 1928d382aafbSBarry Smith Note: 1929d382aafbSBarry Smith This routine is analogous to memcpy(). 1930d382aafbSBarry Smith 1931503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1932503cfb0cSBarry Smith 1933d382aafbSBarry Smith Concepts: memory^copying 1934d382aafbSBarry Smith Concepts: copying^memory 1935d382aafbSBarry Smith 1936d382aafbSBarry Smith .seealso: PetscMemmove() 1937d382aafbSBarry Smith 1938d382aafbSBarry Smith @*/ 19397087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1940d382aafbSBarry Smith { 1941d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1942c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1943c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1944a7e36092SMatthew G Knepley PetscFunctionBegin; 1945e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1946e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1947a7e36092SMatthew G Knepley #else 1948d382aafbSBarry Smith PetscFunctionBegin; 1949a7e36092SMatthew G Knepley #endif 1950a47a537aSLisandro Dalcin if (a != b && n > 0) { 1951d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1952e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1953d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1954d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1955d382aafbSBarry Smith #endif 1956d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1957c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1958d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1959d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1960c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1961c5df96a5SBarry Smith PetscErrorCode ierr; 1962c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19638b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1964d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1965d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1966d382aafbSBarry Smith #else 1967d382aafbSBarry Smith size_t i; 1968d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1969d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1970d382aafbSBarry Smith #endif 1971d382aafbSBarry Smith } else { 1972d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1973d382aafbSBarry Smith } 1974d382aafbSBarry Smith #else 1975d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1976d382aafbSBarry Smith #endif 1977d382aafbSBarry Smith } 1978d382aafbSBarry Smith PetscFunctionReturn(0); 1979d382aafbSBarry Smith } 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith /*@C 1982d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith Not Collective 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith Input Parameters: 1987d382aafbSBarry Smith + a - pointer to beginning memory location 1988d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith Level: intermediate 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith Compile Option: 1993d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1994d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1995d382aafbSBarry Smith 1996503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1997503cfb0cSBarry Smith 1998d382aafbSBarry Smith Concepts: memory^zeroing 1999d382aafbSBarry Smith Concepts: zeroing^memory 2000d382aafbSBarry Smith 2001d382aafbSBarry Smith .seealso: PetscMemcpy() 2002d382aafbSBarry Smith @*/ 20037087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 2004d382aafbSBarry Smith { 2005d382aafbSBarry Smith if (n > 0) { 2006d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2007e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2008d382aafbSBarry Smith #endif 2009d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2010d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2011d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2012d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2013d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2014d382aafbSBarry Smith } else { 2015d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2016d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2017d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2018d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2019d382aafbSBarry Smith } else { 2020d382aafbSBarry Smith #endif 2021d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2022d382aafbSBarry Smith bzero((char *)a,n); 2023d382aafbSBarry Smith #else 2024d382aafbSBarry Smith memset((char*)a,0,n); 2025d382aafbSBarry Smith #endif 2026d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2027d382aafbSBarry Smith } 2028d382aafbSBarry Smith #endif 2029d382aafbSBarry Smith } 2030d382aafbSBarry Smith return 0; 2031d382aafbSBarry Smith } 2032d382aafbSBarry Smith 2033d382aafbSBarry Smith /*MC 2034d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2035d382aafbSBarry Smith 2036eca87e8dSBarry Smith Synopsis: 2037aaa7dc30SBarry Smith #include <petscsys.h> 2038eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2039eca87e8dSBarry Smith 2040d382aafbSBarry Smith Not Collective 2041d382aafbSBarry Smith 2042d382aafbSBarry Smith Input Parameters: 2043d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2044d382aafbSBarry Smith . n - number of elements to fetch 2045d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 204650d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith Level: developer 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith Notes: 2051d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2052d382aafbSBarry Smith 205350d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 205450d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 205550d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 205663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 205763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 205863cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2061d382aafbSBarry Smith address). 2062d382aafbSBarry Smith 2063d382aafbSBarry Smith Concepts: memory 2064d382aafbSBarry Smith M*/ 2065d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2066d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2067d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2068d382aafbSBarry Smith } while (0) 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith /* 2071d382aafbSBarry Smith Determine if some of the kernel computation routines use 2072d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2073d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2074d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2075e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2076d382aafbSBarry Smith */ 2077d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2078d382aafbSBarry Smith 2079d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2080d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2081d382aafbSBarry Smith #endif 2082d382aafbSBarry Smith 20835a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20845a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2085d382aafbSBarry Smith #endif 2086d382aafbSBarry Smith 2087d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2088d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2089d382aafbSBarry Smith #endif 2090d382aafbSBarry Smith 2091d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2092d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2093d382aafbSBarry Smith #endif 2094d382aafbSBarry Smith 2095d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2096d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2097d382aafbSBarry Smith #endif 2098d382aafbSBarry Smith 2099d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2100d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2101d382aafbSBarry Smith #endif 2102d382aafbSBarry Smith 2103d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2104d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2105d382aafbSBarry Smith #endif 2106d382aafbSBarry Smith 2107d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2108d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2109d382aafbSBarry Smith #endif 2110d382aafbSBarry Smith 2111d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2112d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2113d382aafbSBarry Smith #endif 2114d382aafbSBarry Smith 2115d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2116d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2117d382aafbSBarry Smith #endif 2118d382aafbSBarry Smith 2119d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2120d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2121d382aafbSBarry Smith #endif 2122d382aafbSBarry Smith 2123d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2124d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2125d382aafbSBarry Smith #endif 2126d382aafbSBarry Smith 2127d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2128d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2129d382aafbSBarry Smith #endif 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2132d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2133d382aafbSBarry Smith #endif 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith #endif 2136d382aafbSBarry Smith 2137d382aafbSBarry Smith /* 2138d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2139d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2140d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2141d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2142d382aafbSBarry Smith ugly extern "C" {} wrappers. 2143d382aafbSBarry Smith */ 2144d382aafbSBarry Smith #if defined(__cplusplus) 2145d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2146d382aafbSBarry Smith #define EXTERN_C_END } 2147d382aafbSBarry Smith #else 2148d382aafbSBarry Smith #define EXTERN_C_BEGIN 2149d382aafbSBarry Smith #define EXTERN_C_END 2150d382aafbSBarry Smith #endif 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith /*MC 2155d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2156d382aafbSBarry Smith communication 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith Level: beginner 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2163d382aafbSBarry Smith M*/ 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith /*MC 2166d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2167*390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2168*390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2169*390e1bf2SBarry Smith 2170*390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2171*390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscScalar 2172d382aafbSBarry Smith 2173d382aafbSBarry Smith Level: beginner 2174d382aafbSBarry Smith 2175*390e1bf2SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL, PetscComplex, MPIU_INT 2176d382aafbSBarry Smith M*/ 2177d382aafbSBarry Smith 2178d382aafbSBarry Smith /*MC 21798619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21808619c96cSJed Brown 21818619c96cSJed Brown Synopsis: 21828619c96cSJed Brown #include <petscsys.h> 21838619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21848619c96cSJed Brown 21858619c96cSJed Brown Level: beginner 21868619c96cSJed Brown 2187*390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2188*390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscComplex 2189*390e1bf2SBarry Smith 2190*390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2191*390e1bf2SBarry Smith 21928cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21938619c96cSJed Brown 21948619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21958619c96cSJed Brown M*/ 21968619c96cSJed Brown 21978619c96cSJed Brown /*MC 2198d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2199d382aafbSBarry Smith 2200d382aafbSBarry Smith Level: beginner 2201d382aafbSBarry Smith 2202*390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2203*390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscReal 2204*390e1bf2SBarry Smith 2205*390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2206*390e1bf2SBarry Smith 2207*390e1bf2SBarry Smith .seealso: PetscScalar, PetscComplex, MPIU_REAL, MPIU_SCALAR 2208d382aafbSBarry Smith M*/ 2209d382aafbSBarry Smith 2210d382aafbSBarry Smith /*MC 2211d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2212d382aafbSBarry Smith 2213d382aafbSBarry Smith Level: beginner 2214d382aafbSBarry Smith 2215d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2216d382aafbSBarry Smith pass this value 2217d382aafbSBarry Smith 2218*390e1bf2SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT, MPIU_REAL, MPIU_COMPLEX 2219d382aafbSBarry Smith M*/ 2220d382aafbSBarry Smith 2221d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2222d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2223014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2224014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2225d382aafbSBarry Smith #else 2226d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2227d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2228d382aafbSBarry Smith #endif 2229d382aafbSBarry Smith #endif 2230d382aafbSBarry Smith 2231d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2232d382aafbSBarry Smith 2233d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2234d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2235d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2236d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2237d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2238d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2239d382aafbSBarry Smith 224061b0d812SBarry Smith /*@C 224161b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 224261b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 224361b0d812SBarry Smith 224461b0d812SBarry Smith Not Collective 224561b0d812SBarry Smith 224661b0d812SBarry Smith Input Parameter: 224761b0d812SBarry Smith . a - the PetscInt value 224861b0d812SBarry Smith 224961b0d812SBarry Smith Output Parameter: 225061b0d812SBarry Smith . b - the resulting PetscBLASInt value 225161b0d812SBarry Smith 225261b0d812SBarry Smith Level: advanced 225361b0d812SBarry Smith 225461b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 225561b0d812SBarry Smith @*/ 2256c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2257c5df96a5SBarry Smith { 2258c5df96a5SBarry Smith PetscFunctionBegin; 2259ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2260c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2261c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2262c5df96a5SBarry Smith #endif 2263c5df96a5SBarry Smith PetscFunctionReturn(0); 2264c5df96a5SBarry Smith } 2265c5df96a5SBarry Smith 226661b0d812SBarry Smith /*@C 226761b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 226861b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 226961b0d812SBarry Smith 227061b0d812SBarry Smith Not Collective 227161b0d812SBarry Smith 227261b0d812SBarry Smith Input Parameter: 227361b0d812SBarry Smith . a - the PetscInt value 227461b0d812SBarry Smith 227561b0d812SBarry Smith Output Parameter: 227661b0d812SBarry Smith . b - the resulting PetscMPIInt value 227761b0d812SBarry Smith 227861b0d812SBarry Smith Level: advanced 227961b0d812SBarry Smith 228061b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 228161b0d812SBarry Smith @*/ 22824dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22834dc2109aSBarry Smith { 22844dc2109aSBarry Smith PetscFunctionBegin; 2285ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22864dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22874dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22884dc2109aSBarry Smith #endif 22894dc2109aSBarry Smith PetscFunctionReturn(0); 22904dc2109aSBarry Smith } 22914dc2109aSBarry Smith 2292bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 22932f18eb33SBarry Smith 22942f18eb33SBarry Smith /*@C 22952f18eb33SBarry Smith 22962f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22972f18eb33SBarry Smith 22982f18eb33SBarry Smith Not Collective 22992f18eb33SBarry Smith 23002f18eb33SBarry Smith Input Parameter: 23012f18eb33SBarry Smith + a - the PetscReal value 23022f18eb33SBarry Smith - b - the second value 23032f18eb33SBarry Smith 2304*390e1bf2SBarry Smith Returns: 2305*390e1bf2SBarry Smith the result as a PetscInt value 23062f18eb33SBarry Smith 2307bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23082f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23092f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23102f18eb33SBarry Smith 23112f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23122f18eb33SBarry Smith 23132f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23142f18eb33SBarry Smith 23152f18eb33SBarry Smith Level: advanced 23162f18eb33SBarry Smith 2317*390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23182f18eb33SBarry Smith @*/ 23192f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23202f18eb33SBarry Smith { 2321bafee8b4SSatish Balay PetscInt64 r; 23222f18eb33SBarry Smith 2323bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23242f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23252f18eb33SBarry Smith return (PetscInt) r; 23262f18eb33SBarry Smith } 23272f18eb33SBarry Smith 23282f18eb33SBarry Smith /*@C 23292f18eb33SBarry Smith 23302f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23312f18eb33SBarry Smith 23322f18eb33SBarry Smith Not Collective 23332f18eb33SBarry Smith 23342f18eb33SBarry Smith Input Parameter: 23352f18eb33SBarry Smith + a - the PetscInt value 23362f18eb33SBarry Smith - b - the second value 23372f18eb33SBarry Smith 2338*390e1bf2SBarry Smith Returns: 2339*390e1bf2SBarry Smith the result as a PetscInt value 23402f18eb33SBarry Smith 2341bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23422f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23432f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23442f18eb33SBarry Smith 23452f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23462f18eb33SBarry Smith 23472f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23482f18eb33SBarry Smith 23492f18eb33SBarry Smith Level: advanced 23502f18eb33SBarry Smith 2351*390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23522f18eb33SBarry Smith @*/ 23532f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23542f18eb33SBarry Smith { 2355bafee8b4SSatish Balay PetscInt64 r; 23562f18eb33SBarry Smith 2357bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23582f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23592f18eb33SBarry Smith return (PetscInt) r; 23602f18eb33SBarry Smith } 23612f18eb33SBarry Smith 2362f91af8c7SBarry Smith /*@C 2363f91af8c7SBarry Smith 2364f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2365f91af8c7SBarry Smith 2366f91af8c7SBarry Smith Not Collective 2367f91af8c7SBarry Smith 2368f91af8c7SBarry Smith Input Parameter: 2369f91af8c7SBarry Smith + a - the PetscInt value 2370f91af8c7SBarry Smith - b - the second value 2371f91af8c7SBarry Smith 2372*390e1bf2SBarry Smith Returns: 2373*390e1bf2SBarry Smith the result as a PetscInt value 2374f91af8c7SBarry Smith 2375bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2376f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2377f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2378f91af8c7SBarry Smith 2379f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2380f91af8c7SBarry Smith 2381f91af8c7SBarry Smith Level: advanced 2382f91af8c7SBarry Smith 2383*390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2384f91af8c7SBarry Smith @*/ 2385f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2386f91af8c7SBarry Smith { 2387bafee8b4SSatish Balay PetscInt64 r; 2388f91af8c7SBarry Smith 2389bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2390f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2391f91af8c7SBarry Smith return (PetscInt) r; 2392f91af8c7SBarry Smith } 2393f91af8c7SBarry Smith 23942f18eb33SBarry Smith /*@C 23952f18eb33SBarry Smith 23962f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23972f18eb33SBarry Smith 23982f18eb33SBarry Smith Not Collective 23992f18eb33SBarry Smith 24002f18eb33SBarry Smith Input Parameter: 24012f18eb33SBarry Smith + a - the PetscInt value 24022f18eb33SBarry Smith - b - the second value 24032f18eb33SBarry Smith 24042f18eb33SBarry Smith Output Parameter:ma 2405*390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24062f18eb33SBarry Smith 2407bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24082f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24092f18eb33SBarry Smith 2410220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24112f18eb33SBarry Smith 24122f18eb33SBarry Smith Level: advanced 24132f18eb33SBarry Smith 2414220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 24152f18eb33SBarry Smith @*/ 24162f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24172f18eb33SBarry Smith { 2418bafee8b4SSatish Balay PetscInt64 r; 24192f18eb33SBarry Smith 24202f18eb33SBarry Smith PetscFunctionBegin; 2421bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24222f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24232f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24242f18eb33SBarry Smith #endif 2425f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2426f91af8c7SBarry Smith PetscFunctionReturn(0); 2427f91af8c7SBarry Smith } 2428f91af8c7SBarry Smith 2429f91af8c7SBarry Smith /*@C 2430f91af8c7SBarry Smith 2431fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2432f91af8c7SBarry Smith 2433f91af8c7SBarry Smith Not Collective 2434f91af8c7SBarry Smith 2435f91af8c7SBarry Smith Input Parameter: 2436f91af8c7SBarry Smith + a - the PetscInt value 2437f91af8c7SBarry Smith - b - the second value 2438f91af8c7SBarry Smith 2439f91af8c7SBarry Smith Output Parameter:ma 2440*390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2441f91af8c7SBarry Smith 2442bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2443f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2444f91af8c7SBarry Smith 2445f91af8c7SBarry Smith Level: advanced 2446f91af8c7SBarry Smith 2447*390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2448f91af8c7SBarry Smith @*/ 2449f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2450f91af8c7SBarry Smith { 2451bafee8b4SSatish Balay PetscInt64 r; 2452f91af8c7SBarry Smith 2453f91af8c7SBarry Smith PetscFunctionBegin; 2454bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2455f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2456f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2457f91af8c7SBarry Smith #endif 2458f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24592f18eb33SBarry Smith PetscFunctionReturn(0); 24602f18eb33SBarry Smith } 2461c5df96a5SBarry Smith 2462d382aafbSBarry Smith /* 24632981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2464d382aafbSBarry Smith */ 2465d382aafbSBarry Smith #if defined(hz) 2466d382aafbSBarry Smith #undef hz 2467d382aafbSBarry Smith #endif 2468d382aafbSBarry Smith 2469d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2470d382aafbSBarry Smith 2471d382aafbSBarry Smith 2472d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2473d382aafbSBarry Smith #include <limits.h> 2474d382aafbSBarry Smith #endif 2475d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2476d382aafbSBarry Smith #include <sys/param.h> 2477d382aafbSBarry Smith #endif 2478d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2479d382aafbSBarry Smith #include <sys/types.h> 2480d382aafbSBarry Smith #endif 2481d382aafbSBarry Smith #if defined(MAXPATHLEN) 2482d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2483d382aafbSBarry Smith #elif defined(MAX_PATH) 2484d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2485d382aafbSBarry Smith #elif defined(_MAX_PATH) 2486d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2487d382aafbSBarry Smith #else 2488d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2489d382aafbSBarry Smith #endif 2490d382aafbSBarry Smith 2491d382aafbSBarry Smith /*MC 2492d382aafbSBarry Smith 24931b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 24941b266c99SBarry Smith of every function and module definition you need something like 2495d382aafbSBarry Smith 2496d382aafbSBarry Smith $ 2497af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2498d382aafbSBarry Smith $ use petscXXXX 24991b266c99SBarry Smith 25001b266c99SBarry Smith You can delcare PETSc variables using either 25011b266c99SBarry Smith 2502d382aafbSBarry Smith $ XXX variablename 25031b266c99SBarry Smith $ type(tXXX) variablename 25041b266c99SBarry Smith 25051b266c99SBarry Smith for example 25061b266c99SBarry Smith 2507bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 25081b266c99SBarry Smith $ use petscvec 2509d382aafbSBarry Smith $ 25101b266c99SBarry Smith $ Vec A 25111b266c99SBarry Smith $ type(tVec) A 2512d382aafbSBarry Smith 2513d382aafbSBarry Smith Level: beginner 2514d382aafbSBarry Smith 2515d382aafbSBarry Smith M*/ 2516d382aafbSBarry Smith 2517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2519014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2520014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2521014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2522014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 252327710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25245f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2525d382aafbSBarry Smith 2526014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 252860e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25326c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 253317d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 253417d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2536014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 253717df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2540745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2543014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 25446c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 25456c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2546e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2547d382aafbSBarry Smith 2548014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2549014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2550d382aafbSBarry Smith 255176bdecfbSBarry Smith /*J 2552d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2553d382aafbSBarry Smith 2554d382aafbSBarry Smith Level: beginner 2555d382aafbSBarry Smith 2556e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2557d382aafbSBarry Smith with the option --download-sprng 2558d382aafbSBarry Smith 25598f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 256076bdecfbSBarry Smith J*/ 256119fd82e9SBarry Smith typedef const char* PetscRandomType; 2562d382aafbSBarry Smith #define PETSCRAND "rand" 2563d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2564d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2565c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2566d382aafbSBarry Smith 2567d382aafbSBarry Smith /* Logging support */ 2568014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2569d382aafbSBarry Smith 2570607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2571d382aafbSBarry Smith 2572d382aafbSBarry Smith /*S 2573d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2574d382aafbSBarry Smith 2575d382aafbSBarry Smith Level: intermediate 2576d382aafbSBarry Smith 2577d382aafbSBarry Smith Concepts: random numbers 2578d382aafbSBarry Smith 2579d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2580d382aafbSBarry Smith S*/ 2581d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2582d382aafbSBarry Smith 2583d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2584140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2585d382aafbSBarry Smith 2586bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 258719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 258919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2590685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2592d382aafbSBarry Smith 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2602d382aafbSBarry Smith 2603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 261097540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 261197540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2612d382aafbSBarry Smith 2613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2624e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2625d382aafbSBarry Smith 2626d382aafbSBarry Smith /* 2627d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2628d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2629d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2630d382aafbSBarry Smith PetscBinarySeek(). 2631d382aafbSBarry Smith */ 2632d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2633d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2634d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2635d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2636d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2637d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2638d382aafbSBarry Smith 2639d382aafbSBarry Smith /*E 2640d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2641d382aafbSBarry Smith 2642d382aafbSBarry Smith Level: advanced 2643d382aafbSBarry Smith 2644d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2645d382aafbSBarry Smith E*/ 2646d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2650d382aafbSBarry Smith 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2657d382aafbSBarry Smith 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2663cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2664cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2665d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2666d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2667d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2668d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 26696afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 26706afbe7ddSJed Brown MPI_Request**,MPI_Request**, 26716afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 26726afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 26736afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2674d382aafbSBarry Smith 26756145cd65SJed Brown /*E 26766145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 26776145cd65SJed Brown 26786145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 26796145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 26806145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 26816145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 26826145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 26831654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 26841654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 26856145cd65SJed Brown 26866145cd65SJed Brown Level: developer 26876145cd65SJed Brown 26886145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 26896145cd65SJed Brown E*/ 26906145cd65SJed Brown typedef enum { 26916145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 26926145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 26931654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 269412af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 26956145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 26966145cd65SJed Brown } PetscBuildTwoSidedType; 26976145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 26986145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 26996145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27006145cd65SJed Brown 2701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2702d382aafbSBarry Smith 2703d382aafbSBarry Smith /*E 2704d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2705d382aafbSBarry Smith 2706d382aafbSBarry Smith Level: beginner 2707d382aafbSBarry Smith 2708d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2709d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2710d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2711d382aafbSBarry Smith E*/ 27126fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2713d382aafbSBarry Smith 2714d382aafbSBarry Smith /*MC 2715d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2716d382aafbSBarry Smith 2717d382aafbSBarry Smith Level: beginner 2718d382aafbSBarry Smith 2719d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2720eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2721eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2722d382aafbSBarry Smith 2723d382aafbSBarry Smith M*/ 2724d382aafbSBarry Smith 2725d382aafbSBarry Smith /*MC 2726d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2727d382aafbSBarry Smith value into that location 2728d382aafbSBarry Smith 2729d382aafbSBarry Smith Level: beginner 2730d382aafbSBarry Smith 2731d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2732eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2733eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2734d382aafbSBarry Smith 2735d382aafbSBarry Smith M*/ 2736d382aafbSBarry Smith 2737d382aafbSBarry Smith /*MC 2738d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2739d382aafbSBarry Smith 2740d382aafbSBarry Smith Level: beginner 2741d382aafbSBarry Smith 2742d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2743d382aafbSBarry Smith 2744d382aafbSBarry Smith M*/ 2745d382aafbSBarry Smith 2746ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2747ce94432eSBarry Smith 274845487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 274945487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 275045487dadSJed Brown 2751d382aafbSBarry Smith /*S 2752306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2753306c2d5bSBarry Smith 2754306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2755306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 27563bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2757306c2d5bSBarry Smith 2758306c2d5bSBarry Smith Sample Usage: 2759306c2d5bSBarry Smith PetscSubcommCreate() 2760306c2d5bSBarry Smith PetscSubcommSetNumber() 2761306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2762306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2763306c2d5bSBarry Smith PetscSubcommDestroy() 2764d382aafbSBarry Smith 2765d382aafbSBarry Smith Level: advanced 2766d382aafbSBarry Smith 2767d382aafbSBarry Smith Concepts: communicator, create 2768306c2d5bSBarry Smith 2769306c2d5bSBarry Smith Notes: 2770306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 27713bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2772306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2773306c2d5bSBarry Smith 2774306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2775306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2776306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2777306c2d5bSBarry Smith 2778306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2779306c2d5bSBarry Smith are performed. 2780306c2d5bSBarry Smith 2781306c2d5bSBarry Smith 2782306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2783306c2d5bSBarry Smith 2784d382aafbSBarry Smith S*/ 2785d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2786d382aafbSBarry Smith 2787d382aafbSBarry Smith struct _n_PetscSubcomm { 2788d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2789d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2790306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 279145487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 279245487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2793708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 279445487dadSJed Brown PetscSubcommType type; 2795e5acf8a4SHong Zhang char *subcommprefix; 2796d382aafbSBarry Smith }; 2797d382aafbSBarry Smith 2798c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2799306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 280036be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2801014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2802014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2803014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2804014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 280565d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2806053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2807f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2808e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2809d382aafbSBarry Smith 28100f453b92SJed Brown /*S 28110f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28120f453b92SJed Brown 28130f453b92SJed Brown Level: developer 28140f453b92SJed Brown 28150f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28160f453b92SJed Brown S*/ 28170f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 281813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28190f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 282013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2821137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2822137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2823137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 282413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 282513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28260f453b92SJed Brown 2827471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2828471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2829471ecdacSJed Brown * possible. */ 283035005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2831d382aafbSBarry Smith 28329de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 28339de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 28349de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 28359de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 28369de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 28379de0f6ecSBarry Smith 2838268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2839fbfcfee5SBarry Smith 28401f817a21SBarry Smith /*@C 28411f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28421f817a21SBarry Smith 28431f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28441f817a21SBarry Smith 28451f817a21SBarry Smith Input Parameters: 28461f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28471f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28481f817a21SBarry Smith 2849850545d0SSatish Balay Level: intermediate 2850850545d0SSatish Balay 28511f817a21SBarry Smith Options Database: 2852063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 28531f817a21SBarry Smith @*/ 2854dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2855dff31646SBarry Smith { 2856dff31646SBarry Smith size_t len; 2857dff31646SBarry Smith char *vstring; 2858dff31646SBarry Smith PetscErrorCode ierr; 2859dff31646SBarry Smith 28601f817a21SBarry Smith PetscFunctionBegin; 28618d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2862dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 286335005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2864dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2865dff31646SBarry Smith if (set) *set = PETSC_TRUE; 28661f817a21SBarry Smith PetscFunctionReturn(0); 2867dff31646SBarry Smith } 2868dff31646SBarry Smith 2869b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2870fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2871fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2872f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2873fe278a28SBarry Smith 2874f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2875f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2876b967cddfSBarry Smith 287704102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2878763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2879dff31646SBarry Smith 288068e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 28815dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2882d382aafbSBarry Smith 2883b2566f29SBarry Smith 2884b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2885b2566f29SBarry Smith /* 2886b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2887b2566f29SBarry Smith */ 28888f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 288977a5e07dSBarry Smith 289077a5e07dSBarry Smith /*MC 289177a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 289277a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 289377a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 289477a5e07dSBarry Smith 289577a5e07dSBarry Smith Collective on MPI_Comm 289677a5e07dSBarry Smith 289777a5e07dSBarry Smith Synopsis: 289877a5e07dSBarry Smith #include <petscsys.h> 289977a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 290077a5e07dSBarry Smith 290177a5e07dSBarry Smith Input Parameters: 290277a5e07dSBarry Smith + indata - pointer to the input data to be reduced 290377a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 290477a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 290577a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 290677a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 290777a5e07dSBarry Smith 290877a5e07dSBarry Smith Output Parameter: 290977a5e07dSBarry Smith . outdata - the reduced values 291077a5e07dSBarry Smith 291177a5e07dSBarry Smith Notes: In optimized mode this directly calls MPI_Allreduce() 291277a5e07dSBarry Smith 291377a5e07dSBarry Smith Level: developer 291477a5e07dSBarry Smith 291577a5e07dSBarry Smith .seealso: MPI_Allreduce() 291677a5e07dSBarry Smith M*/ 2917fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2918b2566f29SBarry Smith #else 2919b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2920b2566f29SBarry Smith #endif 2921b2566f29SBarry Smith 2922d382aafbSBarry Smith #endif 2923