1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11d382aafbSBarry Smith in the conf/variables definition of PETSC_INCLUDE 12d382aafbSBarry Smith */ 13d382aafbSBarry Smith #include "petscconf.h" 14d382aafbSBarry Smith #include "petscfix.h" 15d382aafbSBarry Smith 1673fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1773fca5a0SBarry Smith /* 1873fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 1973fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2073fca5a0SBarry Smith */ 2173fca5a0SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) 2273fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2373fca5a0SBarry Smith #endif 2473fca5a0SBarry Smith #if defined(PETSC__BSD_SOURCE) 2573fca5a0SBarry Smith #define _BSD_SOURCE 2673fca5a0SBarry Smith #endif 2773fca5a0SBarry Smith #endif 2873fca5a0SBarry Smith 29d382aafbSBarry Smith /* ========================================================================== */ 30d382aafbSBarry Smith /* 31d382aafbSBarry Smith This facilitates using C version of PETSc from C++ and 32e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 33d382aafbSBarry Smith */ 34d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 35d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 36d382aafbSBarry Smith #endif 371ec50b02SJed Brown 381ec50b02SJed Brown #if defined(__cplusplus) 391ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 401ec50b02SJed Brown #else 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 421ec50b02SJed Brown #endif 43d382aafbSBarry Smith 44d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 45d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 46d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 47d382aafbSBarry Smith #else 48d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 49d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 50d382aafbSBarry Smith #endif 51d382aafbSBarry Smith /* ========================================================================== */ 52d382aafbSBarry Smith /* 53d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 54d382aafbSBarry Smith Web page 55d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 56d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 57d382aafbSBarry Smith src/docs/website/index.html. 58d382aafbSBarry Smith */ 59d382aafbSBarry Smith #include "petscversion.h" 60301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 61d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 62301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 63d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 64301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 65d382aafbSBarry Smith #else 66301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 67301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 68d382aafbSBarry Smith #endif 69d382aafbSBarry Smith 70d382aafbSBarry Smith /*MC 71d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 72d382aafbSBarry Smith 73d382aafbSBarry Smith Input Parameter: 74d382aafbSBarry Smith . len - length of the string 75d382aafbSBarry Smith 76d382aafbSBarry Smith Output Parameter: 77d382aafbSBarry Smith . version - version string 78d382aafbSBarry Smith 79d382aafbSBarry Smith Level: developer 80d382aafbSBarry Smith 81d382aafbSBarry Smith Usage: 82d382aafbSBarry Smith char version[256]; 83d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 84d382aafbSBarry Smith 85d382aafbSBarry Smith Fortran Note: 86d382aafbSBarry Smith This routine is not supported in Fortran. 87d382aafbSBarry Smith 88d382aafbSBarry Smith .seealso: PetscGetProgramName() 89d382aafbSBarry Smith 90d382aafbSBarry Smith M*/ 91d382aafbSBarry Smith 92d382aafbSBarry Smith /* ========================================================================== */ 93d382aafbSBarry Smith 94d382aafbSBarry Smith /* 95d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 96d382aafbSBarry Smith 97d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 98d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 99d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 100d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 101d382aafbSBarry Smith mpicxx.h directly in their code 102d382aafbSBarry Smith */ 103d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 104d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 105d382aafbSBarry Smith #include "mpi.h" 10665013866SBarry Smith 107d382aafbSBarry Smith /* 108d382aafbSBarry Smith Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 110d382aafbSBarry Smith 111d382aafbSBarry Smith The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 112d382aafbSBarry Smith */ 113d382aafbSBarry Smith #include <stdio.h> 114d382aafbSBarry Smith 115d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 116d382aafbSBarry Smith #if !defined(MPIAPI) 117d382aafbSBarry Smith #define MPIAPI 118d382aafbSBarry Smith #endif 119d382aafbSBarry Smith 120b3506946SBarry Smith 121d382aafbSBarry Smith /*MC 122d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 123d382aafbSBarry Smith 124d382aafbSBarry Smith Level: beginner 125d382aafbSBarry Smith 126d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 127d382aafbSBarry Smith M*/ 128d382aafbSBarry Smith typedef int PetscErrorCode; 129d382aafbSBarry Smith 130d382aafbSBarry Smith /*MC 131d382aafbSBarry Smith 132503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 133d382aafbSBarry Smith (internal integer in the data structure used for error 134d382aafbSBarry Smith checking). These are all defined by an offset from the lowest 1350700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 136d382aafbSBarry Smith 137d382aafbSBarry Smith Level: advanced 138d382aafbSBarry Smith 1390700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 140d382aafbSBarry Smith M*/ 1410700a824SBarry Smith typedef int PetscClassId; 142d382aafbSBarry Smith 143d382aafbSBarry Smith 144d382aafbSBarry Smith /*MC 145d382aafbSBarry Smith PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 146d382aafbSBarry Smith 147d382aafbSBarry Smith Level: intermediate 148d382aafbSBarry Smith 149d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1503b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 151287e6e24SBarry Smith (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 1523b2a8c54SBarry Smith 1533b2a8c54SBarry Smith PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 1543b2a8c54SBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 1553b2a8c54SBarry Smith 1563b2a8c54SBarry Smith PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 1573b2a8c54SBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 158d382aafbSBarry Smith 159287e6e24SBarry Smith Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 160287e6e24SBarry Smith if you run ./configure with the option 161287e6e24SBarry Smith --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 162287e6e24SBarry Smith for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can 163287e6e24SBarry Smith purchase a 64 bit integer version of the MKL and use that with a PetscBLASInt of long int. 164287e6e24SBarry Smith 165287e6e24SBarry Smith External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 166287e6e24SBarry Smith be used with PETSc if you have set PetscBLASInt to long int. 167287e6e24SBarry Smith 168d382aafbSBarry Smith .seealso: PetscMPIInt, PetscInt 169d382aafbSBarry Smith 170d382aafbSBarry Smith M*/ 171d382aafbSBarry Smith typedef int PetscBLASInt; 172d382aafbSBarry Smith 173d382aafbSBarry Smith /*MC 174d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 175d382aafbSBarry Smith 176d382aafbSBarry Smith Level: intermediate 177d382aafbSBarry Smith 178d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1793b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 180d382aafbSBarry Smith 1813b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 182d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 183d382aafbSBarry Smith 1843b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 185d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 186d382aafbSBarry Smith 187d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 188d382aafbSBarry Smith 189d382aafbSBarry Smith M*/ 190d382aafbSBarry Smith typedef int PetscMPIInt; 191d382aafbSBarry Smith 192d382aafbSBarry Smith /*MC 193d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 194d382aafbSBarry Smith 195d382aafbSBarry Smith Level: intermediate 196d382aafbSBarry Smith 197d382aafbSBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 198d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 199d382aafbSBarry Smith 200d382aafbSBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 201d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 202d382aafbSBarry Smith 203d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 204d382aafbSBarry Smith M*/ 205d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 206d382aafbSBarry Smith 207d382aafbSBarry Smith /*MC 208d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2093b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 210d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 211d382aafbSBarry Smith 212d382aafbSBarry Smith Level: intermediate 213d382aafbSBarry Smith 214d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 215d382aafbSBarry Smith M*/ 216236ed0a3SSatish Balay #if defined(PETSC_HAVE___INT64) 217236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 218236ed0a3SSatish Balay #else 219236ed0a3SSatish Balay typedef long long Petsc64bitInt; 220236ed0a3SSatish Balay #endif 221d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 222236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 223d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 224d382aafbSBarry Smith #else 225d382aafbSBarry Smith typedef int PetscInt; 226d382aafbSBarry Smith #define MPIU_INT MPI_INT 227d382aafbSBarry Smith #endif 228236ed0a3SSatish Balay 229d382aafbSBarry Smith 23058b60935SBarry Smith /*EC 23158b60935SBarry Smith 23258b60935SBarry Smith PetscPrecision - indicates what precision the object is using 23358b60935SBarry Smith 23458b60935SBarry Smith Level: advanced 23558b60935SBarry Smith 23658b60935SBarry Smith .seealso: PetscObjectSetPrecision() 23758b60935SBarry Smith E*/ 23858b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 23958b60935SBarry Smith extern const char *PetscPrecisions[]; 24058b60935SBarry Smith 24158b60935SBarry Smith 242503cfb0cSBarry Smith /* 243503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 244503cfb0cSBarry Smith */ 245d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 246d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 247d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 248d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 249d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 250d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 251d382aafbSBarry Smith #else 252d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 253d382aafbSBarry Smith #endif 254d382aafbSBarry Smith 255d382aafbSBarry Smith 256d382aafbSBarry Smith /* 257d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 258d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 259d382aafbSBarry Smith */ 260d382aafbSBarry Smith 261d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 262d382aafbSBarry Smith 263d382aafbSBarry Smith /* 264d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 265d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 266d382aafbSBarry Smith */ 267d382aafbSBarry Smith extern FILE* PETSC_STDERR; 268d382aafbSBarry Smith 269d382aafbSBarry Smith /* 270d382aafbSBarry Smith PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 271d382aafbSBarry Smith in conjunction with PETSC_STDOUT, or by itself. 272d382aafbSBarry Smith */ 273d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD; 274d382aafbSBarry Smith 275d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 276d382aafbSBarry Smith /*MC 277d382aafbSBarry Smith PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 278d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 279d382aafbSBarry Smith 280d382aafbSBarry Smith Synopsis: 281d382aafbSBarry Smith PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 282d382aafbSBarry Smith 283eca87e8dSBarry Smith Not collective 284eca87e8dSBarry Smith 285d382aafbSBarry Smith Level: developer 286d382aafbSBarry Smith 287d382aafbSBarry Smith Example: 288d382aafbSBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 289d382aafbSBarry Smith PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 290d382aafbSBarry Smith 291d382aafbSBarry Smith .seealso: PetscPolymorphicFunction() 292d382aafbSBarry Smith 293d382aafbSBarry Smith M*/ 294d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 295d382aafbSBarry Smith 296d382aafbSBarry Smith /*MC 297d382aafbSBarry Smith PetscPolymorphicScalar - allows defining a C++ polymorphic version of 298d382aafbSBarry Smith a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 299d382aafbSBarry Smith 300d382aafbSBarry Smith Synopsis: 301d382aafbSBarry Smith PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 302d382aafbSBarry Smith 303eca87e8dSBarry Smith Not collective 304eca87e8dSBarry Smith 305d382aafbSBarry Smith Level: developer 306d382aafbSBarry Smith 307d382aafbSBarry Smith Example: 308d382aafbSBarry Smith PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 309d382aafbSBarry Smith PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 310d382aafbSBarry Smith 311d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 312d382aafbSBarry Smith 313d382aafbSBarry Smith M*/ 314d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 315d382aafbSBarry Smith 316d382aafbSBarry Smith /*MC 317d382aafbSBarry Smith PetscPolymorphicFunction - allows defining a C++ polymorphic version of 318d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 319d382aafbSBarry Smith and returns the computed value (istead of an error code) 320d382aafbSBarry Smith 321d382aafbSBarry Smith Synopsis: 322d382aafbSBarry Smith PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 323d382aafbSBarry Smith 324eca87e8dSBarry Smith Not collective 325eca87e8dSBarry Smith 326d382aafbSBarry Smith Level: developer 327d382aafbSBarry Smith 328d382aafbSBarry Smith Example: 329d382aafbSBarry Smith PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 330d382aafbSBarry Smith PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 331d382aafbSBarry Smith 332d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine() 333d382aafbSBarry Smith 334d382aafbSBarry Smith M*/ 335d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 336d382aafbSBarry Smith 337d382aafbSBarry Smith #else 338d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) 339d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) 340d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) 341d382aafbSBarry Smith #endif 342d382aafbSBarry Smith 343d382aafbSBarry Smith /*MC 344d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 345d382aafbSBarry Smith 346d382aafbSBarry Smith Synopsis: 347ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 348d382aafbSBarry Smith 349eca87e8dSBarry Smith Not Collective 350eca87e8dSBarry Smith 351d382aafbSBarry Smith Input Parameters: 352d382aafbSBarry Smith . cond - condition or expression 353d382aafbSBarry Smith 354d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 355d382aafbSBarry Smith branch is unlikely. 356d382aafbSBarry Smith 357d382aafbSBarry Smith Level: advanced 358d382aafbSBarry Smith 359d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 360d382aafbSBarry Smith M*/ 361d382aafbSBarry Smith 362d382aafbSBarry Smith /*MC 363d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 364d382aafbSBarry Smith 365d382aafbSBarry Smith Synopsis: 366ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 367d382aafbSBarry Smith 368eca87e8dSBarry Smith Not Collective 369eca87e8dSBarry Smith 370d382aafbSBarry Smith Input Parameters: 371d382aafbSBarry Smith . cond - condition or expression 372d382aafbSBarry Smith 373d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 374d382aafbSBarry Smith branch is likely. 375d382aafbSBarry Smith 376d382aafbSBarry Smith Level: advanced 377d382aafbSBarry Smith 378d382aafbSBarry Smith .seealso: PetscUnlikely() 379d382aafbSBarry Smith M*/ 380d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 381d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 382d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 383d382aafbSBarry Smith #else 384cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 385cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 386d382aafbSBarry Smith #endif 387d382aafbSBarry Smith 388d382aafbSBarry Smith /* 389d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 390d382aafbSBarry Smith */ 391d382aafbSBarry Smith #include "petscmath.h" 392d382aafbSBarry Smith 393d382aafbSBarry Smith /* 394d382aafbSBarry Smith Declare extern C stuff after including external header files 395d382aafbSBarry Smith */ 396d382aafbSBarry Smith 397d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 398d382aafbSBarry Smith 399d382aafbSBarry Smith /* 400d382aafbSBarry Smith Basic PETSc constants 401d382aafbSBarry Smith */ 402d382aafbSBarry Smith 403d382aafbSBarry Smith /*E 404ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 405d382aafbSBarry Smith 406d382aafbSBarry Smith Level: beginner 407d382aafbSBarry Smith 408ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 40934e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41034e82e7dSBarry Smith 411d382aafbSBarry Smith E*/ 412ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 413ace3abfcSBarry Smith extern const char *PetscBools[]; 41470b3c8c7SBarry Smith 41570b3c8c7SBarry Smith /*E 41670b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 41770b3c8c7SBarry Smith 41870b3c8c7SBarry Smith Level: beginner 41970b3c8c7SBarry Smith 42070b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42170b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 42270b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 42370b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 42470b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 42570b3c8c7SBarry Smith 42670b3c8c7SBarry Smith E*/ 42770b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 42870b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 429d382aafbSBarry Smith 430d382aafbSBarry Smith /*MC 431ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 432d382aafbSBarry Smith 433d382aafbSBarry Smith Level: beginner 434d382aafbSBarry Smith 435d382aafbSBarry Smith Note: Zero integer 436d382aafbSBarry Smith 437ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 438d382aafbSBarry Smith M*/ 439d382aafbSBarry Smith 440d382aafbSBarry Smith /*MC 441ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 442d382aafbSBarry Smith 443d382aafbSBarry Smith Level: beginner 444d382aafbSBarry Smith 445d382aafbSBarry Smith Note: Nonzero integer 446d382aafbSBarry Smith 447ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 448d382aafbSBarry Smith M*/ 449d382aafbSBarry Smith 450d382aafbSBarry Smith /*MC 451d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 452d382aafbSBarry Smith 453d382aafbSBarry Smith Level: beginner 454d382aafbSBarry Smith 455d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 456d382aafbSBarry Smith some default 457d382aafbSBarry Smith 458d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 459503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 460d382aafbSBarry Smith 46134e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 46234e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 46334e82e7dSBarry Smith 464d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 465d382aafbSBarry Smith 466d382aafbSBarry Smith M*/ 467d382aafbSBarry Smith #define PETSC_NULL 0 468d382aafbSBarry Smith 469d382aafbSBarry Smith /*MC 470d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 471d382aafbSBarry Smith 472d382aafbSBarry Smith Level: beginner 473d382aafbSBarry Smith 474d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 475d382aafbSBarry Smith some default 476d382aafbSBarry Smith 477d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 478d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 479d382aafbSBarry Smith 480d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 481d382aafbSBarry Smith 482d382aafbSBarry Smith M*/ 483d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 484d382aafbSBarry Smith 485d382aafbSBarry Smith /*MC 486557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 487557d4da8SBarry Smith where you wish PETSc to use the default. 488557d4da8SBarry Smith 489557d4da8SBarry Smith Level: beginner 490557d4da8SBarry Smith 491557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 492557d4da8SBarry Smith 493557d4da8SBarry Smith M*/ 494557d4da8SBarry Smith #define PETSC_DECIDE -1 495557d4da8SBarry Smith 496557d4da8SBarry Smith /*MC 497d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 498d382aafbSBarry Smith where you wish PETSc to compute the required value. 499d382aafbSBarry Smith 500d382aafbSBarry Smith Level: beginner 501d382aafbSBarry Smith 502557d4da8SBarry Smith 503557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 504557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 505557d4da8SBarry Smith 506d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 507d382aafbSBarry Smith 508d382aafbSBarry Smith M*/ 509d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 510d382aafbSBarry Smith 511d382aafbSBarry Smith /*MC 512557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 513557d4da8SBarry Smith where you wish PETSc to use the default. 514557d4da8SBarry Smith 515557d4da8SBarry Smith Level: beginner 516557d4da8SBarry Smith 517557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 518557d4da8SBarry Smith 519557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 520557d4da8SBarry Smith 521557d4da8SBarry Smith M*/ 522557d4da8SBarry Smith #define PETSC_DEFAULT -2 523557d4da8SBarry Smith 524557d4da8SBarry Smith /*MC 525d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 526d382aafbSBarry Smith all the processs that PETSc knows about. 527d382aafbSBarry Smith 528d382aafbSBarry Smith Level: beginner 529d382aafbSBarry Smith 530d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 531d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 532d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 533d382aafbSBarry Smith PetscInitialize() 534d382aafbSBarry Smith 535d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 536d382aafbSBarry Smith 537d382aafbSBarry Smith M*/ 538d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 539d382aafbSBarry Smith 540d382aafbSBarry Smith /*MC 541503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 542d382aafbSBarry Smith 543d382aafbSBarry Smith Level: beginner 544d382aafbSBarry Smith 545d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 546d382aafbSBarry Smith 547d382aafbSBarry Smith M*/ 548d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 549d382aafbSBarry Smith 5507087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 5517087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 5520fad1ec9SSatish Balay extern PetscBool synchronizeCUSP; 553d382aafbSBarry Smith 5547087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 5557087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 5567087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 557d382aafbSBarry Smith 558d382aafbSBarry Smith /*MC 559d382aafbSBarry Smith PetscMalloc - Allocates memory 560d382aafbSBarry Smith 561eca87e8dSBarry Smith Synopsis: 562eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 563eca87e8dSBarry Smith 564eca87e8dSBarry Smith Not Collective 565eca87e8dSBarry Smith 566d382aafbSBarry Smith Input Parameter: 567d382aafbSBarry Smith . m - number of bytes to allocate 568d382aafbSBarry Smith 569d382aafbSBarry Smith Output Parameter: 570d382aafbSBarry Smith . result - memory allocated 571d382aafbSBarry Smith 572d382aafbSBarry Smith Level: beginner 573d382aafbSBarry Smith 574d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 575d382aafbSBarry Smith 576d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 577d382aafbSBarry Smith properly handle not freeing the null pointer. 578d382aafbSBarry Smith 579d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 580d382aafbSBarry Smith 581d382aafbSBarry Smith Concepts: memory allocation 582d382aafbSBarry Smith 583d382aafbSBarry Smith M*/ 5842714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 585d382aafbSBarry Smith 586d382aafbSBarry Smith /*MC 587503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 588d382aafbSBarry Smith 589d382aafbSBarry Smith Synopsis: 590d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 591d382aafbSBarry Smith 592eca87e8dSBarry Smith Not Collective 593eca87e8dSBarry Smith 594eca87e8dSBarry Smith Input Parameters: 595eca87e8dSBarry Smith . addr - address to align (any pointer type) 596eca87e8dSBarry Smith 597d382aafbSBarry Smith Level: developer 598d382aafbSBarry Smith 599d382aafbSBarry Smith .seealso: PetscMallocAlign() 600d382aafbSBarry Smith 601d382aafbSBarry Smith Concepts: memory allocation 602d382aafbSBarry Smith M*/ 603d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 604d382aafbSBarry Smith 605d382aafbSBarry Smith /*MC 606503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 607d382aafbSBarry Smith 608eca87e8dSBarry Smith Synopsis: 609eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 610eca87e8dSBarry Smith 611eca87e8dSBarry Smith Not Collective 612eca87e8dSBarry Smith 613d382aafbSBarry Smith Input Parameter: 614d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 615d382aafbSBarry Smith . t1 - type of first memory elements 616d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 617d382aafbSBarry Smith - t2 - type of second memory elements 618d382aafbSBarry Smith 619d382aafbSBarry Smith Output Parameter: 620d382aafbSBarry Smith + r1 - memory allocated in first chunk 621d382aafbSBarry Smith - r2 - memory allocated in second chunk 622d382aafbSBarry Smith 623d382aafbSBarry Smith Level: developer 624d382aafbSBarry Smith 625d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 626d382aafbSBarry Smith 627d382aafbSBarry Smith Concepts: memory allocation 628d382aafbSBarry Smith 629d382aafbSBarry Smith M*/ 630d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 631d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 632d382aafbSBarry Smith #else 6333b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 634d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 635d382aafbSBarry Smith #endif 636d382aafbSBarry Smith 637d382aafbSBarry Smith /*MC 638503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 639d382aafbSBarry Smith 640eca87e8dSBarry Smith Synopsis: 641eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 642eca87e8dSBarry Smith 643eca87e8dSBarry Smith Not Collective 644eca87e8dSBarry Smith 645d382aafbSBarry Smith Input Parameter: 646d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 647d382aafbSBarry Smith . t1 - type of first memory elements 648d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 649d382aafbSBarry Smith . t2 - type of second memory elements 650d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 651d382aafbSBarry Smith - t3 - type of third memory elements 652d382aafbSBarry Smith 653d382aafbSBarry Smith Output Parameter: 654d382aafbSBarry Smith + r1 - memory allocated in first chunk 655d382aafbSBarry Smith . r2 - memory allocated in second chunk 656d382aafbSBarry Smith - r3 - memory allocated in third chunk 657d382aafbSBarry Smith 658d382aafbSBarry Smith Level: developer 659d382aafbSBarry Smith 660d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 661d382aafbSBarry Smith 662d382aafbSBarry Smith Concepts: memory allocation 663d382aafbSBarry Smith 664d382aafbSBarry Smith M*/ 665d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 666d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 667d382aafbSBarry Smith #else 6683b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 669d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 670d382aafbSBarry Smith #endif 671d382aafbSBarry Smith 672d382aafbSBarry Smith /*MC 673503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 674d382aafbSBarry Smith 675eca87e8dSBarry Smith Synopsis: 676eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 677eca87e8dSBarry Smith 678eca87e8dSBarry Smith Not Collective 679eca87e8dSBarry Smith 680d382aafbSBarry Smith Input Parameter: 681d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 682d382aafbSBarry Smith . t1 - type of first memory elements 683d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 684d382aafbSBarry Smith . t2 - type of second memory elements 685d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 686d382aafbSBarry Smith . t3 - type of third memory elements 687d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 688d382aafbSBarry Smith - t4 - type of fourth memory elements 689d382aafbSBarry Smith 690d382aafbSBarry Smith Output Parameter: 691d382aafbSBarry Smith + r1 - memory allocated in first chunk 692d382aafbSBarry Smith . r2 - memory allocated in second chunk 693d382aafbSBarry Smith . r3 - memory allocated in third chunk 694d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 695d382aafbSBarry Smith 696d382aafbSBarry Smith Level: developer 697d382aafbSBarry Smith 698d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 699d382aafbSBarry Smith 700d382aafbSBarry Smith Concepts: memory allocation 701d382aafbSBarry Smith 702d382aafbSBarry Smith M*/ 703d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 704d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 705d382aafbSBarry Smith #else 706d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 7073b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 708d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 709d382aafbSBarry Smith #endif 710d382aafbSBarry Smith 711d382aafbSBarry Smith /*MC 712503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 713d382aafbSBarry Smith 714eca87e8dSBarry Smith Synopsis: 715eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 716eca87e8dSBarry Smith 717eca87e8dSBarry Smith Not Collective 718eca87e8dSBarry Smith 719d382aafbSBarry Smith Input Parameter: 720d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 721d382aafbSBarry Smith . t1 - type of first memory elements 722d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 723d382aafbSBarry Smith . t2 - type of second memory elements 724d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 725d382aafbSBarry Smith . t3 - type of third memory elements 726d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 727d382aafbSBarry Smith . t4 - type of fourth memory elements 728d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 729d382aafbSBarry Smith - t5 - type of fifth memory elements 730d382aafbSBarry Smith 731d382aafbSBarry Smith Output Parameter: 732d382aafbSBarry Smith + r1 - memory allocated in first chunk 733d382aafbSBarry Smith . r2 - memory allocated in second chunk 734d382aafbSBarry Smith . r3 - memory allocated in third chunk 735d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 736d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 737d382aafbSBarry Smith 738d382aafbSBarry Smith Level: developer 739d382aafbSBarry Smith 740d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 741d382aafbSBarry Smith 742d382aafbSBarry Smith Concepts: memory allocation 743d382aafbSBarry Smith 744d382aafbSBarry Smith M*/ 745d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 746d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 747d382aafbSBarry Smith #else 748d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 7493b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 750d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 751d382aafbSBarry Smith #endif 752d382aafbSBarry Smith 753d382aafbSBarry Smith 754d382aafbSBarry Smith /*MC 755503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 756d382aafbSBarry Smith 757eca87e8dSBarry Smith Synopsis: 758eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 759eca87e8dSBarry Smith 760eca87e8dSBarry Smith Not Collective 761eca87e8dSBarry Smith 762d382aafbSBarry Smith Input Parameter: 763d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 764d382aafbSBarry Smith . t1 - type of first memory elements 765d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 766d382aafbSBarry Smith . t2 - type of second memory elements 767d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 768d382aafbSBarry Smith . t3 - type of third memory elements 769d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 770d382aafbSBarry Smith . t4 - type of fourth memory elements 771d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 772d382aafbSBarry Smith . t5 - type of fifth memory elements 773d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 774d382aafbSBarry Smith - t6 - type of sixth memory elements 775d382aafbSBarry Smith 776d382aafbSBarry Smith Output Parameter: 777d382aafbSBarry Smith + r1 - memory allocated in first chunk 778d382aafbSBarry Smith . r2 - memory allocated in second chunk 779d382aafbSBarry Smith . r3 - memory allocated in third chunk 780d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 781d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 782d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 783d382aafbSBarry Smith 784d382aafbSBarry Smith Level: developer 785d382aafbSBarry Smith 786d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 787d382aafbSBarry Smith 788d382aafbSBarry Smith Concepts: memory allocation 789d382aafbSBarry Smith 790d382aafbSBarry Smith M*/ 791d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 792d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 793d382aafbSBarry Smith #else 794d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7953b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 796d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 797d382aafbSBarry Smith #endif 798d382aafbSBarry Smith 799d382aafbSBarry Smith /*MC 800503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 801d382aafbSBarry Smith 802eca87e8dSBarry Smith Synopsis: 803eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 804eca87e8dSBarry Smith 805eca87e8dSBarry Smith Not Collective 806eca87e8dSBarry Smith 807d382aafbSBarry Smith Input Parameter: 808d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 809d382aafbSBarry Smith . t1 - type of first memory elements 810d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 811d382aafbSBarry Smith . t2 - type of second memory elements 812d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 813d382aafbSBarry Smith . t3 - type of third memory elements 814d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 815d382aafbSBarry Smith . t4 - type of fourth memory elements 816d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 817d382aafbSBarry Smith . t5 - type of fifth memory elements 818d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 819d382aafbSBarry Smith . t6 - type of sixth memory elements 820d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 821d382aafbSBarry Smith - t7 - type of sixth memory elements 822d382aafbSBarry Smith 823d382aafbSBarry Smith Output Parameter: 824d382aafbSBarry Smith + r1 - memory allocated in first chunk 825d382aafbSBarry Smith . r2 - memory allocated in second chunk 826d382aafbSBarry Smith . r3 - memory allocated in third chunk 827d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 828d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 829d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 830eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 831d382aafbSBarry Smith 832d382aafbSBarry Smith Level: developer 833d382aafbSBarry Smith 834d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 835d382aafbSBarry Smith 836d382aafbSBarry Smith Concepts: memory allocation 837d382aafbSBarry Smith 838d382aafbSBarry Smith M*/ 839d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 840d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 841d382aafbSBarry Smith #else 842d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 8433b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 844d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 845d382aafbSBarry Smith #endif 846d382aafbSBarry Smith 847d382aafbSBarry Smith /*MC 848503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 849d382aafbSBarry Smith 850eca87e8dSBarry Smith Synopsis: 851eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 852eca87e8dSBarry Smith 853eca87e8dSBarry Smith Not Collective 854eca87e8dSBarry Smith 855d382aafbSBarry Smith Input Parameter: 856d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 857d382aafbSBarry Smith 858d382aafbSBarry Smith Output Parameter: 859d382aafbSBarry Smith . result - memory allocated 860d382aafbSBarry Smith 861d382aafbSBarry Smith Level: beginner 862d382aafbSBarry Smith 863ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 864d382aafbSBarry Smith 865d382aafbSBarry Smith Concepts: memory allocation 866d382aafbSBarry Smith 867d382aafbSBarry Smith M*/ 868d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 869ad0619ddSBarry Smith 870ad0619ddSBarry Smith /*MC 871ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 872ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 873ad0619ddSBarry Smith 874ad0619ddSBarry Smith Synopsis: 875ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 876ad0619ddSBarry Smith 877ad0619ddSBarry Smith Not Collective 878ad0619ddSBarry Smith 879ad0619ddSBarry Smith Input Parameter: 880ad0619ddSBarry Smith + obj - object memory is logged to 881ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 882ad0619ddSBarry Smith 883ad0619ddSBarry Smith Output Parameter: 884ad0619ddSBarry Smith . result - memory allocated 885ad0619ddSBarry Smith 886ad0619ddSBarry Smith Level: developer 887ad0619ddSBarry Smith 888ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 889ad0619ddSBarry Smith 890ad0619ddSBarry Smith Concepts: memory allocation 891ad0619ddSBarry Smith 892ad0619ddSBarry Smith M*/ 893d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 894d382aafbSBarry Smith 895d382aafbSBarry Smith /*MC 896d382aafbSBarry Smith PetscFree - Frees memory 897d382aafbSBarry Smith 898eca87e8dSBarry Smith Synopsis: 899eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 900eca87e8dSBarry Smith 901eca87e8dSBarry Smith Not Collective 902eca87e8dSBarry Smith 903d382aafbSBarry Smith Input Parameter: 904d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 905d382aafbSBarry Smith 906d382aafbSBarry Smith Level: beginner 907d382aafbSBarry Smith 908d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 909d382aafbSBarry Smith 910d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 911d382aafbSBarry Smith 912d382aafbSBarry Smith Concepts: memory allocation 913d382aafbSBarry Smith 914d382aafbSBarry Smith M*/ 91512537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 916d382aafbSBarry Smith 917d382aafbSBarry Smith /*MC 918d382aafbSBarry Smith PetscFreeVoid - Frees memory 919d382aafbSBarry Smith 920d382aafbSBarry Smith Synopsis: 921d382aafbSBarry Smith void PetscFreeVoid(void *memory) 922d382aafbSBarry Smith 923eca87e8dSBarry Smith Not Collective 924eca87e8dSBarry Smith 925eca87e8dSBarry Smith Input Parameter: 926eca87e8dSBarry Smith . memory - memory to free 927eca87e8dSBarry Smith 928d382aafbSBarry Smith Level: beginner 929d382aafbSBarry Smith 930d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 931d382aafbSBarry Smith 932d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 933d382aafbSBarry Smith 934d382aafbSBarry Smith Concepts: memory allocation 935d382aafbSBarry Smith 936d382aafbSBarry Smith M*/ 9372714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 938d382aafbSBarry Smith 939d382aafbSBarry Smith 940d382aafbSBarry Smith /*MC 941d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 942d382aafbSBarry Smith 943eca87e8dSBarry Smith Synopsis: 944eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 945eca87e8dSBarry Smith 946eca87e8dSBarry Smith Not Collective 947eca87e8dSBarry Smith 948d382aafbSBarry Smith Input Parameter: 949d382aafbSBarry Smith + memory1 - memory to free 950d382aafbSBarry Smith - memory2 - 2nd memory to free 951d382aafbSBarry Smith 952d382aafbSBarry Smith Level: developer 953d382aafbSBarry Smith 954d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 955d382aafbSBarry Smith 956d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 957d382aafbSBarry Smith 958d382aafbSBarry Smith Concepts: memory allocation 959d382aafbSBarry Smith 960d382aafbSBarry Smith M*/ 961d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 962d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 963d382aafbSBarry Smith #else 96481dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 965d382aafbSBarry Smith #endif 966d382aafbSBarry Smith 967d382aafbSBarry Smith /*MC 968d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 969d382aafbSBarry Smith 970eca87e8dSBarry Smith Synopsis: 971eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 972eca87e8dSBarry Smith 973eca87e8dSBarry Smith Not Collective 974eca87e8dSBarry Smith 975d382aafbSBarry Smith Input Parameter: 976d382aafbSBarry Smith + memory1 - memory to free 977d382aafbSBarry Smith . memory2 - 2nd memory to free 978d382aafbSBarry Smith - memory3 - 3rd memory to free 979d382aafbSBarry Smith 980d382aafbSBarry Smith Level: developer 981d382aafbSBarry Smith 982d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 983d382aafbSBarry Smith 984d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 985d382aafbSBarry Smith 986d382aafbSBarry Smith Concepts: memory allocation 987d382aafbSBarry Smith 988d382aafbSBarry Smith M*/ 989d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 990d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 991d382aafbSBarry Smith #else 99281dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 993d382aafbSBarry Smith #endif 994d382aafbSBarry Smith 995d382aafbSBarry Smith /*MC 996d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 997d382aafbSBarry Smith 998eca87e8dSBarry Smith Synopsis: 999eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1000eca87e8dSBarry Smith 1001eca87e8dSBarry Smith Not Collective 1002eca87e8dSBarry Smith 1003d382aafbSBarry Smith Input Parameter: 1004d382aafbSBarry Smith + m1 - memory to free 1005d382aafbSBarry Smith . m2 - 2nd memory to free 1006d382aafbSBarry Smith . m3 - 3rd memory to free 1007d382aafbSBarry Smith - m4 - 4th memory to free 1008d382aafbSBarry Smith 1009d382aafbSBarry Smith Level: developer 1010d382aafbSBarry Smith 1011d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1012d382aafbSBarry Smith 1013d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1014d382aafbSBarry Smith 1015d382aafbSBarry Smith Concepts: memory allocation 1016d382aafbSBarry Smith 1017d382aafbSBarry Smith M*/ 1018d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1019d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1020d382aafbSBarry Smith #else 102181dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1022d382aafbSBarry Smith #endif 1023d382aafbSBarry Smith 1024d382aafbSBarry Smith /*MC 1025d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1026d382aafbSBarry Smith 1027eca87e8dSBarry Smith Synopsis: 1028eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1029eca87e8dSBarry Smith 1030eca87e8dSBarry Smith Not Collective 1031eca87e8dSBarry Smith 1032d382aafbSBarry Smith Input Parameter: 1033d382aafbSBarry Smith + m1 - memory to free 1034d382aafbSBarry Smith . m2 - 2nd memory to free 1035d382aafbSBarry Smith . m3 - 3rd memory to free 1036d382aafbSBarry Smith . m4 - 4th memory to free 1037d382aafbSBarry Smith - m5 - 5th memory to free 1038d382aafbSBarry Smith 1039d382aafbSBarry Smith Level: developer 1040d382aafbSBarry Smith 1041d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1042d382aafbSBarry Smith 1043d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1044d382aafbSBarry Smith 1045d382aafbSBarry Smith Concepts: memory allocation 1046d382aafbSBarry Smith 1047d382aafbSBarry Smith M*/ 1048d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1049d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1050d382aafbSBarry Smith #else 105181dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1052d382aafbSBarry Smith #endif 1053d382aafbSBarry Smith 1054d382aafbSBarry Smith 1055d382aafbSBarry Smith /*MC 1056d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1057d382aafbSBarry Smith 1058eca87e8dSBarry Smith Synopsis: 1059eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1060eca87e8dSBarry Smith 1061eca87e8dSBarry Smith Not Collective 1062eca87e8dSBarry Smith 1063d382aafbSBarry Smith Input Parameter: 1064d382aafbSBarry Smith + m1 - memory to free 1065d382aafbSBarry Smith . m2 - 2nd memory to free 1066d382aafbSBarry Smith . m3 - 3rd memory to free 1067d382aafbSBarry Smith . m4 - 4th memory to free 1068d382aafbSBarry Smith . m5 - 5th memory to free 1069d382aafbSBarry Smith - m6 - 6th memory to free 1070d382aafbSBarry Smith 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith Level: developer 1073d382aafbSBarry Smith 1074d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1075d382aafbSBarry Smith 1076d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1077d382aafbSBarry Smith 1078d382aafbSBarry Smith Concepts: memory allocation 1079d382aafbSBarry Smith 1080d382aafbSBarry Smith M*/ 1081d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1082d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1083d382aafbSBarry Smith #else 108481dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1085d382aafbSBarry Smith #endif 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith /*MC 1088d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1089d382aafbSBarry Smith 1090eca87e8dSBarry Smith Synopsis: 1091eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1092eca87e8dSBarry Smith 1093eca87e8dSBarry Smith Not Collective 1094eca87e8dSBarry Smith 1095d382aafbSBarry Smith Input Parameter: 1096d382aafbSBarry Smith + m1 - memory to free 1097d382aafbSBarry Smith . m2 - 2nd memory to free 1098d382aafbSBarry Smith . m3 - 3rd memory to free 1099d382aafbSBarry Smith . m4 - 4th memory to free 1100d382aafbSBarry Smith . m5 - 5th memory to free 1101d382aafbSBarry Smith . m6 - 6th memory to free 1102d382aafbSBarry Smith - m7 - 7th memory to free 1103d382aafbSBarry Smith 1104d382aafbSBarry Smith 1105d382aafbSBarry Smith Level: developer 1106d382aafbSBarry Smith 1107d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1108d382aafbSBarry Smith 1109d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1110d382aafbSBarry Smith PetscMalloc7() 1111d382aafbSBarry Smith 1112d382aafbSBarry Smith Concepts: memory allocation 1113d382aafbSBarry Smith 1114d382aafbSBarry Smith M*/ 1115d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1116d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1117d382aafbSBarry Smith #else 111881dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1119d382aafbSBarry Smith #endif 1120d382aafbSBarry Smith 11217087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 11227087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 11237087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 11247087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1125d382aafbSBarry Smith 1126d382aafbSBarry Smith /* 112766d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1128d382aafbSBarry Smith */ 11297087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 11307087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 11317087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 11327087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 11337087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 11347087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 11357087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith 1138d382aafbSBarry Smith /*E 1139d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith Level: beginner 1142d382aafbSBarry Smith 1143d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1146d382aafbSBarry Smith PetscDataTypeGetSize() 1147d382aafbSBarry Smith 1148d382aafbSBarry Smith E*/ 1149d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 115059a34000SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType; 1151d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1152d382aafbSBarry Smith 1153d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1154d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1155d382aafbSBarry Smith #else 1156ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1157d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 115859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 115959a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1160d382aafbSBarry Smith #else 1161d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1162d382aafbSBarry Smith #endif 1163d382aafbSBarry Smith #endif 1164ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1165d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 116659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 116759a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1168d382aafbSBarry Smith #else 1169d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1170d382aafbSBarry Smith #endif 1171d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1172d382aafbSBarry Smith 11737087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11747087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11757087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1176d382aafbSBarry Smith 1177d382aafbSBarry Smith /* 1178d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1179d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1180d382aafbSBarry Smith functionality and/or error checking. 1181d382aafbSBarry Smith */ 11827087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11837087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11847087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11857087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11867087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11877087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11887087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11897087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11907087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 11917087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 11927087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 11937087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 11947087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 11957087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 11967087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 11977087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 11987087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 11997087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 12007087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 120174722a09SBarry Smith extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 12027ba3a57cSBarry Smith extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 12037087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 12047087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith /*S 1207d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith Level: intermediate 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1212d382aafbSBarry Smith S*/ 1213d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1214d382aafbSBarry Smith 12157087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 12167087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 12178c74ee41SBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken*); 1218d382aafbSBarry Smith 1219d382aafbSBarry Smith /* 1220d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1221d382aafbSBarry Smith */ 12227087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 1223ce63c4c1SBarry Smith #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 12247087cfbeSBarry Smith extern MPI_Op MPIU_SUM; 1225d382aafbSBarry Smith #else 1226d382aafbSBarry Smith #define MPIU_SUM MPI_SUM 1227d382aafbSBarry Smith #endif 1228ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 1229d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1230d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1231d9822059SBarry Smith #else 1232d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1233d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1234d9822059SBarry Smith #endif 12357087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1236d382aafbSBarry Smith 1237eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1238eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1239eb3f98d2SBarry Smith 1240d382aafbSBarry Smith /*S 1241d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1242d382aafbSBarry Smith 1243d382aafbSBarry Smith Level: beginner 1244d382aafbSBarry Smith 1245d382aafbSBarry Smith Note: This is the base class from which all objects appear. 1246d382aafbSBarry Smith 12471890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1248d382aafbSBarry Smith S*/ 1249d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith /*S 1252d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1253d382aafbSBarry Smith by string name 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith Level: advanced 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy() 1258d382aafbSBarry Smith S*/ 1259d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1260d382aafbSBarry Smith 1261e4d1774bSDmitry Karpeev /*S 1262e4d1774bSDmitry Karpeev PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries, 1263e4d1774bSDmitry Karpeev accessed by string op name together with string argument types. 1264e4d1774bSDmitry Karpeev 1265e4d1774bSDmitry Karpeev Level: advanced 1266e4d1774bSDmitry Karpeev 1267e4d1774bSDmitry Karpeev .seealso: PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy() 1268e4d1774bSDmitry Karpeev S*/ 1269e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList; 1270e4d1774bSDmitry Karpeev 1271d382aafbSBarry Smith /*E 1272d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1273d382aafbSBarry Smith 1274d382aafbSBarry Smith Level: beginner 1275d382aafbSBarry Smith 1276d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1281d382aafbSBarry Smith 1282d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1283d382aafbSBarry Smith 1284d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1285d382aafbSBarry Smith 1286d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1287d382aafbSBarry Smith E*/ 1288d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith #include "petscviewer.h" 1291d382aafbSBarry Smith #include "petscoptions.h" 1292d382aafbSBarry Smith 12930700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 12947087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 12957087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 12967087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1297d382aafbSBarry Smith 1298d382aafbSBarry Smith /* 1299d382aafbSBarry Smith Routines that get memory usage information from the OS 1300d382aafbSBarry Smith */ 13017087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 13027087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 13037087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 13047087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1305d382aafbSBarry Smith 13067087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 13077087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 13087087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 13097087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1310d382aafbSBarry Smith 1311d382aafbSBarry Smith /* 1312d382aafbSBarry Smith Initialization of PETSc 1313d382aafbSBarry Smith */ 13147087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1315d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 13167087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 13177087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 13187087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 13197087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 132009573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 13217087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 13227087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 13237087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1324d382aafbSBarry Smith 13257087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 13267087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1327d382aafbSBarry Smith 1328d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 132985afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 133085afcc9aSBarry Smith extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 133185afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFinalize(void); 133285afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 133385afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 133485afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 133585afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1336d382aafbSBarry Smith 13377087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 13387087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 13397087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 13405180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1341d382aafbSBarry Smith 1342d382aafbSBarry Smith /* 1343d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 1344d382aafbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be 1345d382aafbSBarry Smith C++. 1346d382aafbSBarry Smith */ 1347d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1348d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1349d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1350d382aafbSBarry Smith 1351d382aafbSBarry Smith /* 1352d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1353d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1354503cfb0cSBarry Smith 1355503cfb0cSBarry Smith Level: developer 1356503cfb0cSBarry Smith 1357503cfb0cSBarry Smith .seealso: PetscUseMethod() 1358d382aafbSBarry Smith */ 1359d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1360d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1361d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1362d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1363d382aafbSBarry Smith } 1364503cfb0cSBarry Smith 1365503cfb0cSBarry Smith /* 1366503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1367503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1368503cfb0cSBarry Smith 1369503cfb0cSBarry Smith Level: developer 1370503cfb0cSBarry Smith 1371503cfb0cSBarry Smith .seealso: PetscTryMethod() 1372503cfb0cSBarry Smith */ 1373d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1374d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1375d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1376d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1377703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1378d382aafbSBarry Smith } 1379503cfb0cSBarry Smith 1380d382aafbSBarry Smith /* 1381d382aafbSBarry Smith Functions that can act on any PETSc object. 1382d382aafbSBarry Smith */ 1383fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13847087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13857087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1386609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13877087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13887087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13897087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13907087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 13917087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 13927087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 13937087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 13947087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 13957087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 13967087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 13977087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 13987087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 13997087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 14007087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 14017087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 14026ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 14037087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 14047087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 14057087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 14067087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 14077087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 14087087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 14097087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 14107087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1411d382aafbSBarry Smith 1412d382aafbSBarry Smith /*MC 1413d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1414d382aafbSBarry Smith 1415eca87e8dSBarry Smith Synopsis: 1416eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1417eca87e8dSBarry Smith 1418ad4df100SBarry Smith Logically Collective on PetscObject 1419d382aafbSBarry Smith 1420d382aafbSBarry Smith Input Parameters: 1421d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1422d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1423d382aafbSBarry Smith . name - name associated with the child function 1424d382aafbSBarry Smith . fname - name of the function 1425d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1426d382aafbSBarry Smith 1427d382aafbSBarry Smith Level: advanced 1428d382aafbSBarry Smith 1429d382aafbSBarry Smith 1430d382aafbSBarry Smith Notes: 1431d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1432d382aafbSBarry Smith 1433d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1434d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1435d382aafbSBarry Smith 1436d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 143720de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1438d382aafbSBarry Smith enabled. 1439d382aafbSBarry Smith 1440d382aafbSBarry Smith Concepts: objects^composing functions 1441d382aafbSBarry Smith Concepts: composing functions 1442d382aafbSBarry Smith Concepts: functions^querying 1443d382aafbSBarry Smith Concepts: objects^querying 1444d382aafbSBarry Smith Concepts: querying objects 1445d382aafbSBarry Smith 1446d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1447d382aafbSBarry Smith M*/ 1448d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1449d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1450d382aafbSBarry Smith #else 1451d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1452d382aafbSBarry Smith #endif 1453d382aafbSBarry Smith 14547087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 14557087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 14567087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 14577087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 14587087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 14597087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 14607087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 14617087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 14627087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 14637087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 14647087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 14657087cfbeSBarry Smith extern PetscErrorCode PetscTypeCompare(PetscObject,const char[],PetscBool *); 14662b12f010SJed Brown extern PetscErrorCode PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14677087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14687087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1469d382aafbSBarry Smith 1470d382aafbSBarry Smith /* 1471d382aafbSBarry Smith Defines PETSc error handling. 1472d382aafbSBarry Smith */ 1473d382aafbSBarry Smith #include "petscerror.h" 1474d382aafbSBarry Smith 1475d382aafbSBarry Smith /*S 1476503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1477d382aafbSBarry Smith 14781d0fab5eSBarry Smith Level: developer 1479d382aafbSBarry Smith 14801d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14811d0fab5eSBarry Smith 14821d0fab5eSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1483d382aafbSBarry Smith S*/ 1484d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1485d382aafbSBarry Smith 1486fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14877087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1488bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14897087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14906ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 14917087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1492d382aafbSBarry Smith 1493d382aafbSBarry Smith /* 1494503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1495d382aafbSBarry Smith link libraries that will be loaded as needed. 1496d382aafbSBarry Smith */ 14977087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 14987087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 14994b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 15007087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1501d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1502d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1503d382aafbSBarry Smith #else 1504d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1505d382aafbSBarry Smith #endif 15067087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 15077087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 15087087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 15097087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1510d382aafbSBarry Smith 1511*48703020SDmitry Karpeev /* 1512*48703020SDmitry Karpeev Multiple dispatch operation function lists. Lists of names of routines with corresponding 1513*48703020SDmitry Karpeev argument type names with function pointers or in dynamic link libraries that will be loaded 1514*48703020SDmitry Karpeev as needed. Search on the op name and argument type names. 1515*48703020SDmitry Karpeev */ 1516*48703020SDmitry Karpeev typedef void (*PetscOpF)(void); 1517*48703020SDmitry Karpeev extern PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscOpF, const char[], PetscInt, char*[]); 1518*48703020SDmitry Karpeev extern PetscErrorCode PetscOpFListDestroy(PetscOpFList*); 1519*48703020SDmitry Karpeev extern PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscOpF*, const char[], PetscInt, char*[]); 1520*48703020SDmitry Karpeev extern PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer); 1521d382aafbSBarry Smith /*S 1522d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1523d382aafbSBarry Smith 1524d382aafbSBarry Smith Level: advanced 1525d382aafbSBarry Smith 152620de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1527d382aafbSBarry Smith 1528d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1529d382aafbSBarry Smith S*/ 1530d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 15317087cfbeSBarry Smith extern PetscDLLibrary DLLibrariesLoaded; 15327087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 15337087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 15347087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 15357087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 15367087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 15377087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 15387087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 15397087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1540d382aafbSBarry Smith 1541d382aafbSBarry Smith /* 154205846914SDmitry Karpeev PetscFwk support. Needs to be documented. 154305846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 154405846914SDmitry Karpeev */ 154505846914SDmitry Karpeev #include "petscfwk.h" 154605846914SDmitry Karpeev 154705846914SDmitry Karpeev /* 1548d382aafbSBarry Smith Useful utility routines 1549d382aafbSBarry Smith */ 15507087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 15517087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 15527087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1553d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1554d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 15557087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1556d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1557d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 15587087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 15597087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1560d382aafbSBarry Smith 1561503cfb0cSBarry Smith /* 1562ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1563503cfb0cSBarry Smith 1564503cfb0cSBarry Smith Notes: This is useful in cases like 1565503cfb0cSBarry Smith $ int *a; 1566ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1567ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1568503cfb0cSBarry Smith */ 1569d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1570503cfb0cSBarry Smith 1571d382aafbSBarry Smith /* 1572d382aafbSBarry Smith Defines basic graphics available from PETSc. 1573d382aafbSBarry Smith */ 1574d382aafbSBarry Smith #include "petscdraw.h" 1575d382aafbSBarry Smith 1576d382aafbSBarry Smith /* 1577d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1578d382aafbSBarry Smith */ 1579d382aafbSBarry Smith #include "private/petscimpl.h" 1580503cfb0cSBarry Smith 1581238ccf28SShri Abhyankar 1582d382aafbSBarry Smith /*MC 1583d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1584d382aafbSBarry Smith 1585d382aafbSBarry Smith Synopsis: 1586d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1587d382aafbSBarry Smith 1588eca87e8dSBarry Smith Not Collective 1589eca87e8dSBarry Smith 1590d382aafbSBarry Smith Input Parameters: 1591d382aafbSBarry Smith . format - the usual printf() format string 1592d382aafbSBarry Smith 1593d382aafbSBarry Smith Options Database Keys: 1594d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1595d382aafbSBarry Smith (default) stderr 1596d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1597d382aafbSBarry Smith error is handled.) 1598d382aafbSBarry Smith 1599d382aafbSBarry Smith Notes: Use 1600d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1601d382aafbSBarry Smith $ error is handled.) and 1602d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1603c9a19010SBarry Smith $ of you can use your own function 1604d382aafbSBarry Smith 1605d382aafbSBarry Smith Use 1606d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1607d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1608d382aafbSBarry Smith 1609d382aafbSBarry Smith Use 1610d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1611d382aafbSBarry Smith 1612d382aafbSBarry Smith Level: developer 1613d382aafbSBarry Smith 1614d382aafbSBarry Smith Fortran Note: 1615d382aafbSBarry Smith This routine is not supported in Fortran. 1616d382aafbSBarry Smith 1617d382aafbSBarry Smith Concepts: error messages^printing 1618d382aafbSBarry Smith Concepts: printing^error messages 1619d382aafbSBarry Smith 1620c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1621d382aafbSBarry Smith M*/ 16227087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1623d382aafbSBarry Smith 1624d382aafbSBarry Smith /*MC 1625d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1626d382aafbSBarry Smith 1627d382aafbSBarry Smith Synopsis: 1628d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1629d382aafbSBarry Smith 1630eca87e8dSBarry Smith Not Collective 1631eca87e8dSBarry Smith 1632d382aafbSBarry Smith Input Parameters: 1633d382aafbSBarry Smith . format - the usual printf() format string 1634d382aafbSBarry Smith 1635d382aafbSBarry Smith Level: developer 1636d382aafbSBarry Smith 1637d382aafbSBarry Smith Fortran Note: 1638d382aafbSBarry Smith This routine is not supported in Fortran. 1639d382aafbSBarry Smith 1640d382aafbSBarry Smith Concepts: help messages^printing 1641d382aafbSBarry Smith Concepts: printing^help messages 1642d382aafbSBarry Smith 1643d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1644d382aafbSBarry Smith M*/ 16457087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1646d382aafbSBarry Smith 1647fcfd50ebSBarry Smith /* 1648fcfd50ebSBarry Smith Defines PETSc profiling. 1649fcfd50ebSBarry Smith */ 1650fcfd50ebSBarry Smith #include "petsclog.h" 1651fcfd50ebSBarry Smith 1652fcfd50ebSBarry Smith /* 1653fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1654fcfd50ebSBarry Smith */ 1655fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1656fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1657fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1658fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1659fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1660fcfd50ebSBarry Smith #else 1661fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1662fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1663fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1664fcfd50ebSBarry Smith #endif 1665fcfd50ebSBarry Smith 1666fcfd50ebSBarry Smith /* 1667fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1668fcfd50ebSBarry Smith */ 1669fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1670fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1671fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1672fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1673fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1674fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1675257d2499SJed Brown extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1676fcfd50ebSBarry Smith 1677fcfd50ebSBarry Smith 1678fcfd50ebSBarry Smith 1679fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1680fcfd50ebSBarry Smith #include <stdarg.h> 1681fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1682fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1683fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1684fcfd50ebSBarry Smith 1685fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1686fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1687fcfd50ebSBarry Smith #endif 1688fcfd50ebSBarry Smith 168909573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 169009573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 169109573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1692d382aafbSBarry Smith 1693d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16947087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16957087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1696d382aafbSBarry Smith #endif 1697d382aafbSBarry Smith 16987087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 16997087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 17007087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 17017087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 17027087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 17037087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 17047087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1705d382aafbSBarry Smith 17067087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1707d382aafbSBarry Smith 1708d382aafbSBarry Smith /*S 1709d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1710d382aafbSBarry Smith 1711d382aafbSBarry Smith Level: advanced 1712d382aafbSBarry Smith 1713d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1714d382aafbSBarry Smith S*/ 17157087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1716d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 17177087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 17187087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1719fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 17207087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 17217087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1722d382aafbSBarry Smith 1723d382aafbSBarry Smith /* 1724d382aafbSBarry Smith For use in debuggers 1725d382aafbSBarry Smith */ 17267087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 17277087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 17287087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 17297087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 17307087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1731d382aafbSBarry Smith 1732d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1733d382aafbSBarry Smith #include <memory.h> 1734d382aafbSBarry Smith #endif 1735d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1736d382aafbSBarry Smith #include <stdlib.h> 1737d382aafbSBarry Smith #endif 1738d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1739d382aafbSBarry Smith #include <strings.h> 1740d382aafbSBarry Smith #endif 1741d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1742d382aafbSBarry Smith #include <string.h> 1743d382aafbSBarry Smith #endif 17446c7e564aSBarry Smith 17456c7e564aSBarry Smith 1746d382aafbSBarry Smith #if defined(PETSC_HAVE_XMMINTRIN_H) 1747d382aafbSBarry Smith #include <xmmintrin.h> 1748d382aafbSBarry Smith #endif 1749d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1750d382aafbSBarry Smith #include <stdint.h> 1751d382aafbSBarry Smith #endif 1752d382aafbSBarry Smith 1753fcfd50ebSBarry Smith #undef __FUNCT__ 1754fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1755d382aafbSBarry Smith /*@C 1756d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1757d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1758d382aafbSBarry Smith PetscMemmove() in that case. 1759d382aafbSBarry Smith 1760d382aafbSBarry Smith Not Collective 1761d382aafbSBarry Smith 1762d382aafbSBarry Smith Input Parameters: 1763d382aafbSBarry Smith + b - pointer to initial memory space 1764d382aafbSBarry Smith - n - length (in bytes) of space to copy 1765d382aafbSBarry Smith 1766d382aafbSBarry Smith Output Parameter: 1767d382aafbSBarry Smith . a - pointer to copy space 1768d382aafbSBarry Smith 1769d382aafbSBarry Smith Level: intermediate 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith Compile Option: 1772d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1773d382aafbSBarry Smith for memory copies on double precision values. 1774d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1775d382aafbSBarry Smith for memory copies on double precision values. 1776d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1777d382aafbSBarry Smith for memory copies on double precision values. 1778d382aafbSBarry Smith 1779d382aafbSBarry Smith Note: 1780d382aafbSBarry Smith This routine is analogous to memcpy(). 1781d382aafbSBarry Smith 1782503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1783503cfb0cSBarry Smith 1784d382aafbSBarry Smith Concepts: memory^copying 1785d382aafbSBarry Smith Concepts: copying^memory 1786d382aafbSBarry Smith 1787d382aafbSBarry Smith .seealso: PetscMemmove() 1788d382aafbSBarry Smith 1789d382aafbSBarry Smith @*/ 17907087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1791d382aafbSBarry Smith { 1792d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1793d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1794d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1795a7e36092SMatthew G Knepley PetscFunctionBegin; 1796e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1797e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1798a7e36092SMatthew G Knepley #else 1799d382aafbSBarry Smith PetscFunctionBegin; 1800a7e36092SMatthew G Knepley #endif 1801d382aafbSBarry Smith if (a != b) { 1802d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1803d382aafbSBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) { 1804e32f2f54SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1805d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1806d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1807d382aafbSBarry Smith } 1808d382aafbSBarry Smith #endif 1809d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1810d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1811d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1812d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1813d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1814d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1815d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1816d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1817d382aafbSBarry Smith #else 1818d382aafbSBarry Smith size_t i; 1819d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1820d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1821d382aafbSBarry Smith #endif 1822d382aafbSBarry Smith } else { 1823d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1824d382aafbSBarry Smith } 1825d382aafbSBarry Smith #else 1826d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1827d382aafbSBarry Smith #endif 1828d382aafbSBarry Smith } 1829d382aafbSBarry Smith PetscFunctionReturn(0); 1830d382aafbSBarry Smith } 1831d382aafbSBarry Smith 1832d382aafbSBarry Smith /*@C 1833d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1834d382aafbSBarry Smith 1835d382aafbSBarry Smith Not Collective 1836d382aafbSBarry Smith 1837d382aafbSBarry Smith Input Parameters: 1838d382aafbSBarry Smith + a - pointer to beginning memory location 1839d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1840d382aafbSBarry Smith 1841d382aafbSBarry Smith Level: intermediate 1842d382aafbSBarry Smith 1843d382aafbSBarry Smith Compile Option: 1844d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1845d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1846d382aafbSBarry Smith 1847503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1848503cfb0cSBarry Smith 1849d382aafbSBarry Smith Concepts: memory^zeroing 1850d382aafbSBarry Smith Concepts: zeroing^memory 1851d382aafbSBarry Smith 1852d382aafbSBarry Smith .seealso: PetscMemcpy() 1853d382aafbSBarry Smith @*/ 18547087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1855d382aafbSBarry Smith { 1856d382aafbSBarry Smith if (n > 0) { 1857d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1858e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1859d382aafbSBarry Smith #endif 1860d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1861d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1862d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1863d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1864d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1865d382aafbSBarry Smith } else { 1866d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1867d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1868d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1869d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1870d382aafbSBarry Smith } else { 1871d382aafbSBarry Smith #endif 1872d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1873d382aafbSBarry Smith bzero((char *)a,n); 1874d382aafbSBarry Smith #else 1875d382aafbSBarry Smith memset((char*)a,0,n); 1876d382aafbSBarry Smith #endif 1877d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1878d382aafbSBarry Smith } 1879d382aafbSBarry Smith #endif 1880d382aafbSBarry Smith } 1881d382aafbSBarry Smith return 0; 1882d382aafbSBarry Smith } 1883d382aafbSBarry Smith 1884d382aafbSBarry Smith /*MC 1885d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1886d382aafbSBarry Smith 1887eca87e8dSBarry Smith Synopsis: 1888eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1889eca87e8dSBarry Smith 1890d382aafbSBarry Smith Not Collective 1891d382aafbSBarry Smith 1892d382aafbSBarry Smith Input Parameters: 1893d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1894d382aafbSBarry Smith . n - number of elements to fetch 1895d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 189650d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith Level: developer 1899d382aafbSBarry Smith 1900d382aafbSBarry Smith Notes: 1901d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1902d382aafbSBarry Smith 190350d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 190450d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 190550d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 190663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 190763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 190863cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1911d382aafbSBarry Smith address). 1912d382aafbSBarry Smith 1913d382aafbSBarry Smith Concepts: memory 1914d382aafbSBarry Smith M*/ 1915d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1916d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1917d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1918d382aafbSBarry Smith } while (0) 1919d382aafbSBarry Smith 1920d382aafbSBarry Smith /* 1921e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1922d382aafbSBarry Smith */ 1923d382aafbSBarry Smith #include "petscmatlab.h" 1924d382aafbSBarry Smith 1925d382aafbSBarry Smith /* 1926d382aafbSBarry Smith Determine if some of the kernel computation routines use 1927d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1928d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1929d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1930e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1931d382aafbSBarry Smith */ 1932d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1933d382aafbSBarry Smith 1934d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1935d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1936d382aafbSBarry Smith #endif 1937d382aafbSBarry Smith 19385a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 19395a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1940d382aafbSBarry Smith #endif 1941d382aafbSBarry Smith 1942d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1943d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1944d382aafbSBarry Smith #endif 1945d382aafbSBarry Smith 1946d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1947d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1948d382aafbSBarry Smith #endif 1949d382aafbSBarry Smith 1950d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1951d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1952d382aafbSBarry Smith #endif 1953d382aafbSBarry Smith 1954d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1955d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1956d382aafbSBarry Smith #endif 1957d382aafbSBarry Smith 1958d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1959d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1960d382aafbSBarry Smith #endif 1961d382aafbSBarry Smith 1962d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1963d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1964d382aafbSBarry Smith #endif 1965d382aafbSBarry Smith 1966d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1967d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1968d382aafbSBarry Smith #endif 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1971d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1972d382aafbSBarry Smith #endif 1973d382aafbSBarry Smith 1974d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1975d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1976d382aafbSBarry Smith #endif 1977d382aafbSBarry Smith 1978d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1979d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1980d382aafbSBarry Smith #endif 1981d382aafbSBarry Smith 1982d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1983d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1984d382aafbSBarry Smith #endif 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1987d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1988d382aafbSBarry Smith #endif 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith #endif 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith /* 1993d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1994d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1995d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1996d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1997d382aafbSBarry Smith ugly extern "C" {} wrappers. 1998d382aafbSBarry Smith */ 1999d382aafbSBarry Smith #if defined(__cplusplus) 2000d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2001d382aafbSBarry Smith #define EXTERN_C_END } 2002d382aafbSBarry Smith #else 2003d382aafbSBarry Smith #define EXTERN_C_BEGIN 2004d382aafbSBarry Smith #define EXTERN_C_END 2005d382aafbSBarry Smith #endif 2006d382aafbSBarry Smith 2007d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2008d382aafbSBarry Smith 2009d382aafbSBarry Smith /*MC 2010d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2011d382aafbSBarry Smith communication 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith Level: beginner 2014d382aafbSBarry Smith 2015d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2016d382aafbSBarry Smith 2017d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2018d382aafbSBarry Smith M*/ 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith /*MC 2021d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2022d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2023d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2024d382aafbSBarry Smith 2025d382aafbSBarry Smith 2026d382aafbSBarry Smith Level: beginner 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2029d382aafbSBarry Smith M*/ 2030d382aafbSBarry Smith 2031d382aafbSBarry Smith /*MC 2032d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2033d382aafbSBarry Smith 2034d382aafbSBarry Smith Level: beginner 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2037d382aafbSBarry Smith M*/ 2038d382aafbSBarry Smith 2039d382aafbSBarry Smith /*MC 2040d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2041d382aafbSBarry Smith Level: beginner 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2044d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2047d382aafbSBarry Smith M*/ 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith /*MC 2050d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith Level: beginner 2053d382aafbSBarry Smith 2054d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2055d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2056d382aafbSBarry Smith 2057d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2058d382aafbSBarry Smith M*/ 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith /*MC 2061d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2062d382aafbSBarry Smith 2063d382aafbSBarry Smith Level: beginner 2064d382aafbSBarry Smith 2065d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2066d382aafbSBarry Smith pass this value 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2069d382aafbSBarry Smith M*/ 2070d382aafbSBarry Smith 2071d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2072d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2073d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2074d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2075d382aafbSBarry Smith #else 2076d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2077d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2078d382aafbSBarry Smith #endif 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2082d382aafbSBarry Smith 2083d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2084d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2085d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2086d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2087d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2088d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2089d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2090d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2091d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2094e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2095e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2096eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2097eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2098d382aafbSBarry Smith 2099d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2100e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2101eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2102d382aafbSBarry Smith #else 2103d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2104d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2105d382aafbSBarry Smith #endif 2106d382aafbSBarry Smith 2107d382aafbSBarry Smith #else 2108d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2109d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2110d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2111d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2112d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2113d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2114d382aafbSBarry Smith #endif 2115d382aafbSBarry Smith 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith /* 2118d382aafbSBarry Smith The IBM include files define hz, here we hide it so that it may be used 2119d382aafbSBarry Smith as a regular user variable. 2120d382aafbSBarry Smith */ 2121d382aafbSBarry Smith #if defined(hz) 2122d382aafbSBarry Smith #undef hz 2123d382aafbSBarry Smith #endif 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2126d382aafbSBarry Smith 2127d382aafbSBarry Smith 2128d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2129d382aafbSBarry Smith #include <limits.h> 2130d382aafbSBarry Smith #endif 2131d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2132d382aafbSBarry Smith #include <sys/param.h> 2133d382aafbSBarry Smith #endif 2134d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2135d382aafbSBarry Smith #include <sys/types.h> 2136d382aafbSBarry Smith #endif 2137d382aafbSBarry Smith #if defined(MAXPATHLEN) 2138d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2139d382aafbSBarry Smith #elif defined(MAX_PATH) 2140d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2141d382aafbSBarry Smith #elif defined(_MAX_PATH) 2142d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2143d382aafbSBarry Smith #else 2144d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2145d382aafbSBarry Smith #endif 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith /* Special support for C++ */ 2148d382aafbSBarry Smith #include "petscsys.hh" 21496c7e564aSBarry Smith 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith /*MC 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith $ 1) classic Fortran 77 style 2156d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2157d382aafbSBarry Smith $ XXX variablename 2158d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2159d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2160d382aafbSBarry Smith $ 2161d382aafbSBarry Smith $ 2) classic Fortran 90 style 2162d1716517SSatish Balay $#include "finclude/petscXXX.h" 2163d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2164d382aafbSBarry Smith $ XXX variablename 2165d382aafbSBarry Smith $ 2166d382aafbSBarry Smith $ 3) Using Fortran modules 2167d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2168d382aafbSBarry Smith $ use petscXXXX 2169d382aafbSBarry Smith $ XXX variablename 2170d382aafbSBarry Smith $ 2171d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2172d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2173d382aafbSBarry Smith $ use petscXXXX 2174d382aafbSBarry Smith $ type(XXX) variablename 2175e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2176d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2177d382aafbSBarry Smith 2178d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2179d382aafbSBarry Smith 2180d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2181d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2182d382aafbSBarry Smith $ integer variablename 2183d382aafbSBarry Smith $ 2184d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2185d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2186d382aafbSBarry Smith 2187d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2188d382aafbSBarry Smith for only a few PETSc functions. 2189d382aafbSBarry Smith 2190d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2191d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2192d382aafbSBarry Smith you cannot have something like 2193d382aafbSBarry Smith $ PetscInt row,col 2194d382aafbSBarry Smith $ PetscScalar val 2195d382aafbSBarry Smith $ ... 2196d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2197d382aafbSBarry Smith You must instead have 2198d382aafbSBarry Smith $ PetscInt row(1),col(1) 2199d382aafbSBarry Smith $ PetscScalar val(1) 2200d382aafbSBarry Smith $ ... 2201d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith 2204d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2205d382aafbSBarry Smith 2206d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2207d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2208d382aafbSBarry Smith 2209d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2210d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2211d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2212d382aafbSBarry Smith 2213d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2214e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2215d382aafbSBarry Smith 2216d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2217d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2218d382aafbSBarry Smith 2219d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2220d382aafbSBarry Smith automatically by "make allfortranstubs". 2221d382aafbSBarry Smith 2222e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2223d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2224d382aafbSBarry Smith include their predecessors 2225d382aafbSBarry Smith 2226d382aafbSBarry Smith Level: beginner 2227d382aafbSBarry Smith 2228d382aafbSBarry Smith M*/ 2229d382aafbSBarry Smith 22307087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 22317087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 22327087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 22337087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 22347087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 22357087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2236d382aafbSBarry Smith 22377087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 22387087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 22397087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 22407087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 22417087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2242d7aa01a8SHong Zhang extern PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 22437087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 22447087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 22457087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 22467087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 22477087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 22487087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 22497087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 22509b67c4b3SDmitry Karpeev extern PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2251d382aafbSBarry Smith 22527087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 22537087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2254d382aafbSBarry Smith 225576bdecfbSBarry Smith /*J 2256d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2257d382aafbSBarry Smith with an optional dynamic library name, for example 2258d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2259d382aafbSBarry Smith 2260d382aafbSBarry Smith Level: beginner 2261d382aafbSBarry Smith 2262e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2263d382aafbSBarry Smith with the option --download-sprng 2264d382aafbSBarry Smith 2265d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 226676bdecfbSBarry Smith J*/ 2267d382aafbSBarry Smith #define PetscRandomType char* 2268d382aafbSBarry Smith #define PETSCRAND "rand" 2269d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2270d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2271d382aafbSBarry Smith 2272d382aafbSBarry Smith /* Logging support */ 22737087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2274d382aafbSBarry Smith 22757087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2276d382aafbSBarry Smith 2277d382aafbSBarry Smith /*S 2278d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2279d382aafbSBarry Smith 2280d382aafbSBarry Smith Level: intermediate 2281d382aafbSBarry Smith 2282d382aafbSBarry Smith Concepts: random numbers 2283d382aafbSBarry Smith 2284d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2285d382aafbSBarry Smith S*/ 2286d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2287d382aafbSBarry Smith 2288d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2289d382aafbSBarry Smith extern PetscFList PetscRandomList; 2290ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2291d382aafbSBarry Smith 22927087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 22937087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22947087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 22957087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 22967087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 22977087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 22987087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 22997087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2300d382aafbSBarry Smith 2301d382aafbSBarry Smith /*MC 2302d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2303d382aafbSBarry Smith 2304d382aafbSBarry Smith Synopsis: 23051890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2306d382aafbSBarry Smith 2307d382aafbSBarry Smith Not Collective 2308d382aafbSBarry Smith 2309d382aafbSBarry Smith Input Parameters: 2310d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2311d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2312d382aafbSBarry Smith . func_name - The name of routine to create method context 2313d382aafbSBarry Smith - create_func - The creation routine itself 2314d382aafbSBarry Smith 2315d382aafbSBarry Smith Notes: 2316d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2317d382aafbSBarry Smith 2318d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2319d382aafbSBarry Smith 2320d382aafbSBarry Smith Sample usage: 2321d382aafbSBarry Smith .vb 2322d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2323d382aafbSBarry Smith .ve 2324d382aafbSBarry Smith 2325d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2326d382aafbSBarry Smith .vb 2327d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2328d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2329d382aafbSBarry Smith .ve 2330d382aafbSBarry Smith or at runtime via the option 2331d382aafbSBarry Smith .vb 2332d382aafbSBarry Smith -random_type my_random_name 2333d382aafbSBarry Smith .ve 2334d382aafbSBarry Smith 2335d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2336d382aafbSBarry Smith 2337d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2338d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2339d382aafbSBarry Smith 2340d382aafbSBarry Smith Level: advanced 2341d382aafbSBarry Smith 2342d382aafbSBarry Smith .keywords: PetscRandom, register 2343d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2344d382aafbSBarry Smith M*/ 2345d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2346d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2347d382aafbSBarry Smith #else 2348d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2349d382aafbSBarry Smith #endif 2350d382aafbSBarry Smith 23517087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 23527087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 23537087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 23547087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 23557087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 23567087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 23577087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 23587087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2359fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2360d382aafbSBarry Smith 23617087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 23627087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 23637087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 23647087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 23657087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 23667087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 23677087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2368d382aafbSBarry Smith 23697087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 23707087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 23717087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 23727087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 23737087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 23747087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 23757087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 23767087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23777087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23787087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23797087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23807087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23817087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2382d382aafbSBarry Smith 2383d382aafbSBarry Smith /* 2384d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2385d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2386d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2387d382aafbSBarry Smith PetscBinarySeek(). 2388d382aafbSBarry Smith */ 2389d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2390d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2391d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2392d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2393d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2394d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2395d382aafbSBarry Smith 2396d382aafbSBarry Smith /*E 2397d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2398d382aafbSBarry Smith 2399d382aafbSBarry Smith Level: advanced 2400d382aafbSBarry Smith 2401d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2402d382aafbSBarry Smith E*/ 2403d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 24047087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 24057087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 240646090da6SBarry Smith extern PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2407d382aafbSBarry Smith 24087087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 24097087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 24107087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 24117087cfbeSBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(char*); 24127087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 24137087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2414d382aafbSBarry Smith 24157087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 24167087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 24177087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 24187087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 24197087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2420d382aafbSBarry Smith 24217087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2422d382aafbSBarry Smith 2423d382aafbSBarry Smith /*E 2424d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2425d382aafbSBarry Smith 2426d382aafbSBarry Smith Level: beginner 2427d382aafbSBarry Smith 2428d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2429d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2430d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2431d382aafbSBarry Smith E*/ 243211f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2433d382aafbSBarry Smith 2434d382aafbSBarry Smith /*MC 2435d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2436d382aafbSBarry Smith 2437d382aafbSBarry Smith Level: beginner 2438d382aafbSBarry Smith 2439d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2440eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2441eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2442d382aafbSBarry Smith 2443d382aafbSBarry Smith M*/ 2444d382aafbSBarry Smith 2445d382aafbSBarry Smith /*MC 2446d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2447d382aafbSBarry Smith value into that location 2448d382aafbSBarry Smith 2449d382aafbSBarry Smith Level: beginner 2450d382aafbSBarry Smith 2451d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2452eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2453eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2454d382aafbSBarry Smith 2455d382aafbSBarry Smith M*/ 2456d382aafbSBarry Smith 2457d382aafbSBarry Smith /*MC 2458d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2459d382aafbSBarry Smith 2460d382aafbSBarry Smith Level: beginner 2461d382aafbSBarry Smith 2462d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2463d382aafbSBarry Smith 2464d382aafbSBarry Smith M*/ 2465d382aafbSBarry Smith 2466d382aafbSBarry Smith /*S 2467d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2468d382aafbSBarry Smith 2469d382aafbSBarry Smith Level: advanced 2470d382aafbSBarry Smith 2471d382aafbSBarry Smith Concepts: communicator, create 2472d382aafbSBarry Smith S*/ 2473d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2474d382aafbSBarry Smith 2475d382aafbSBarry Smith struct _n_PetscSubcomm { 2476d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2477d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2478d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2479d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2480d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2481d382aafbSBarry Smith }; 2482d382aafbSBarry Smith 2483638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2484638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2485638faf0bSHong Zhang 24867087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2487fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24887087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24897087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,const PetscSubcommType); 24907087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2491d382aafbSBarry Smith 249282a7e548SBarry Smith #include <petscctable.h> 249382a7e548SBarry Smith 2494d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24956c7e564aSBarry Smith 24969e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24979e03d832SJed Brown #undef __FUNCT__ 24989e03d832SJed Brown #define __FUNCT__ "User provided function" 24999e03d832SJed Brown 2500d382aafbSBarry Smith #endif 2501