1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 526bd1501SBarry Smith #if !defined(PETSCSYS_H) 626bd1501SBarry Smith #define PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith # if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith # define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith # endif 25216f1ae6SBarry Smith # if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith # define _BSD_SOURCE 2773fca5a0SBarry Smith # endif 2807f00807SSatish Balay # if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay # define _DEFAULT_SOURCE 3007f00807SSatish Balay # endif 31ea0fecefSShri Abhyankar # if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar # define _GNU_SOURCE 33ea0fecefSShri Abhyankar # endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36df4397b0SStefano Zampini #include <petscsystypes.h> 37df4397b0SStefano Zampini 38d382aafbSBarry Smith /* ========================================================================== */ 39d382aafbSBarry Smith /* 402c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 41d382aafbSBarry Smith */ 421ec50b02SJed Brown #if defined(__cplusplus) 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 441ec50b02SJed Brown #else 451ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 461ec50b02SJed Brown #endif 47d382aafbSBarry Smith 48c5e4d11fSDmitry Karpeev /* ========================================================================== */ 49c5e4d11fSDmitry Karpeev /* 50c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 511cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 521cc8b206SBarry Smith file within an extern "C". 53c5e4d11fSDmitry Karpeev */ 54c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 55c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 56c5e4d11fSDmitry Karpeev #endif 57c5e4d11fSDmitry Karpeev 58ed938b00SJed Brown #if defined(__cplusplus) 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 60ed938b00SJed Brown #else 61ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 62ed938b00SJed Brown #endif 63ed938b00SJed Brown 64ed938b00SJed Brown #if defined(__cplusplus) 6558c433abSLisandro Dalcin # define PETSC_INLINE PETSC_CXX_INLINE 66ed938b00SJed Brown #else 6758c433abSLisandro Dalcin # define PETSC_INLINE PETSC_C_INLINE 68ed938b00SJed Brown #endif 69ed938b00SJed Brown 7058c433abSLisandro Dalcin #define PETSC_STATIC_INLINE static PETSC_INLINE 7158c433abSLisandro Dalcin 72ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 73014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 74014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7521f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7726703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7826703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7926703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 8026703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 81014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 82014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 84d382aafbSBarry Smith #else 85014dd563SJed Brown # define PETSC_DLLEXPORT 86014dd563SJed Brown # define PETSC_DLLIMPORT 8721f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 88014dd563SJed Brown #endif 89014dd563SJed Brown 90014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 91014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 92014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 93014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 94014dd563SJed Brown #endif 95014dd563SJed Brown 961cc8b206SBarry Smith /* 971cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 981cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 991cc8b206SBarry Smith used from C and are always visible in the shared libraries 1001cc8b206SBarry Smith */ 1012c280183SJed Brown #if defined(__cplusplus) 102014dd563SJed Brown # define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown # define PETSC_EXTERN_TYPEDEF extern "C" 10421f66b81SJed Brown # define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 105014dd563SJed Brown #else 106014dd563SJed Brown # define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 107638cfed1SJed Brown # define PETSC_EXTERN_TYPEDEF 1086258c452SJed Brown # define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 109d382aafbSBarry Smith #endif 11027710113SBarry Smith 1112c8e378dSBarry Smith #include <petscversion.h> 112a8d69d7bSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n https://www.mcs.anl.gov/petsc/\n" 113d382aafbSBarry Smith 114d382aafbSBarry Smith /* ========================================================================== */ 115d382aafbSBarry Smith 116d382aafbSBarry Smith /* 117d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 118d382aafbSBarry Smith 119d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 120d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 121d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 122d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 123d382aafbSBarry Smith mpicxx.h directly in their code 124d382aafbSBarry Smith */ 125fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 126d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 127fa9e63e2SJed Brown #endif 128fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 129d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 130fa9e63e2SJed Brown #endif 131e771154cSJed Brown #if defined(PETSC_HAVE_MPIUNI) 132e771154cSJed Brown # include <petsc/mpiuni/mpi.h> 133e771154cSJed Brown #else 1342c8e378dSBarry Smith # include <mpi.h> 135e771154cSJed Brown #endif 13665013866SBarry Smith 137d382aafbSBarry Smith /* 138a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 139a7886beaSBarry Smith This usually happens because 140a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 141a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 142a7886beaSBarry Smith */ 143a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 144c9b973beSBarry Smith # if !defined(MPIUNI_H) 145a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 146a7886beaSBarry Smith # endif 14741f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14841f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14941f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 15041f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 15141f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 15241f4af4cSSatish Balay # endif 15341f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 15441f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 15541f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 15641f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 15741f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15841f4af4cSSatish Balay # endif 159a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 16041f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 161a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 162ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 163a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 164a7886beaSBarry Smith # endif 165a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 166a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 167a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 168ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 169c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 170a7886beaSBarry Smith # endif 171d97fd468SStefano Zampini #elif defined(PETSC_HAVE_MSMPI_VERSION) 172d97fd468SStefano Zampini # if !defined(MSMPI_VER) 173d97fd468SStefano Zampini # error "PETSc was configured with MSMPI but now appears to be compiling using a non-MSMPI mpi.h" 174d97fd468SStefano Zampini # elif (MSMPI_VER != PETSC_HAVE_MSMPI_VERSION) 175d97fd468SStefano Zampini # error "PETSc was configured with one MSMPI mpi.h version but now appears to be compiling using a different MSMPI mpi.h version" 176d97fd468SStefano Zampini # endif 177d97fd468SStefano Zampini #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) || defined(MSMPI_VER) 178d97fd468SStefano Zampini # error "PETSc was configured with undetermined MPI - but now appears to be compiling using any of OpenMPI, MS-MPI or a MPICH variant" 179a7886beaSBarry Smith #endif 180a7886beaSBarry Smith 181a7886beaSBarry Smith /* 1822981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 183d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 184d382aafbSBarry Smith */ 185d382aafbSBarry Smith #include <stdio.h> 186d382aafbSBarry Smith 187d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 188d382aafbSBarry Smith #if !defined(MPIAPI) 189d382aafbSBarry Smith #define MPIAPI 190d382aafbSBarry Smith #endif 191d382aafbSBarry Smith 1921cc8b206SBarry Smith /* 1931cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1941cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1951cc8b206SBarry Smith does not match the actual type of the argument being passed in 1961cc8b206SBarry Smith */ 197c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 198894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 199894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 2008ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 2018ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 202894dd566SJed Brown # endif 203894dd566SJed Brown #endif 204894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 205894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 2068ad47952SJed Brown # define PetscAttrMPITypeTag(type) 2078ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 208894dd566SJed Brown #endif 209b3506946SBarry Smith 2105a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 211df4397b0SStefano Zampini PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 212e28ce29aSPatrick Sanan 213e28ce29aSPatrick Sanan /*MC 214e28ce29aSPatrick Sanan MPIU_INT - MPI datatype corresponding to PetscInt 215e28ce29aSPatrick Sanan 216e28ce29aSPatrick Sanan Notes: 217e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscInt or array of PetscInt values, pass this value. 218e28ce29aSPatrick Sanan 219e28ce29aSPatrick Sanan Level: beginner 220e28ce29aSPatrick Sanan 221e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX 222e28ce29aSPatrick Sanan M*/ 223e28ce29aSPatrick Sanan 22437354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 225bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 226a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 227fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 228bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 229a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 230f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 231bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 232a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 233236ed0a3SSatish Balay #else 234bafee8b4SSatish Balay # error "cannot determine PetscInt64 type" 235236ed0a3SSatish Balay #endif 236b7b8f77aSBarry Smith 2377cdaf61dSJed Brown PETSC_EXTERN MPI_Datatype MPIU_FORTRANADDR; 238b7b8f77aSBarry Smith 239d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 240bd84f1cfSSatish Balay # define MPIU_INT MPIU_INT64 241a05e1a72SSatish Balay # define PetscInt_FMT PetscInt64_FMT 242d382aafbSBarry Smith #else 243d382aafbSBarry Smith # define MPIU_INT MPI_INT 244a05e1a72SSatish Balay # define PetscInt_FMT "d" 245d382aafbSBarry Smith #endif 246d382aafbSBarry Smith 247503cfb0cSBarry Smith /* 248503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 249503cfb0cSBarry Smith */ 250e316c87fSJed Brown PETSC_EXTERN MPI_Datatype MPIU_SIZE_T; 251d382aafbSBarry Smith 252d382aafbSBarry Smith /* 253d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 254d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 255d382aafbSBarry Smith */ 256014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 257d382aafbSBarry Smith 258d382aafbSBarry Smith /* 259d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 260d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 261d382aafbSBarry Smith */ 262014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 263d382aafbSBarry Smith 264d382aafbSBarry Smith /*MC 265d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 266d382aafbSBarry Smith 267d382aafbSBarry Smith Synopsis: 268aaa7dc30SBarry Smith #include <petscsys.h> 269ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 270d382aafbSBarry Smith 271eca87e8dSBarry Smith Not Collective 272eca87e8dSBarry Smith 273d382aafbSBarry Smith Input Parameters: 274d382aafbSBarry Smith . cond - condition or expression 275d382aafbSBarry Smith 276e28ce29aSPatrick Sanan Notes: 277e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 278d382aafbSBarry Smith branch is unlikely. 279d382aafbSBarry Smith 280d382aafbSBarry Smith Level: advanced 281d382aafbSBarry Smith 282d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 283d382aafbSBarry Smith M*/ 284d382aafbSBarry Smith 285d382aafbSBarry Smith /*MC 286d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 287d382aafbSBarry Smith 288d382aafbSBarry Smith Synopsis: 289aaa7dc30SBarry Smith #include <petscsys.h> 29023072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 291d382aafbSBarry Smith 292eca87e8dSBarry Smith Not Collective 293eca87e8dSBarry Smith 294d382aafbSBarry Smith Input Parameters: 295d382aafbSBarry Smith . cond - condition or expression 296d382aafbSBarry Smith 297e28ce29aSPatrick Sanan Notes: 298e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 299d382aafbSBarry Smith branch is likely. 300d382aafbSBarry Smith 301d382aafbSBarry Smith Level: advanced 302d382aafbSBarry Smith 303d382aafbSBarry Smith .seealso: PetscUnlikely() 304d382aafbSBarry Smith M*/ 305d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 306d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 307d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 308d382aafbSBarry Smith #else 309cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 310cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 311d382aafbSBarry Smith #endif 312d382aafbSBarry Smith 313d382aafbSBarry Smith /* 314d382aafbSBarry Smith Declare extern C stuff after including external header files 315d382aafbSBarry Smith */ 316d382aafbSBarry Smith 3176a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 31870b3c8c7SBarry Smith 3198b49ba18SBarry Smith /* 320390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 3218b49ba18SBarry Smith */ 3228b49ba18SBarry Smith #include <petscmath.h> 3238b49ba18SBarry Smith 3246a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 325d382aafbSBarry Smith 326d382aafbSBarry Smith /*MC 3270298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 328d382aafbSBarry Smith 329d382aafbSBarry Smith Level: beginner 330d382aafbSBarry Smith 331e28ce29aSPatrick Sanan Note: 332e28ce29aSPatrick Sanan Accepted by many PETSc functions to not set a parameter and instead use 333d382aafbSBarry Smith some default 334d382aafbSBarry Smith 335e28ce29aSPatrick Sanan Fortran Notes: 336e28ce29aSPatrick Sanan This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 337d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 338d382aafbSBarry Smith 339e28ce29aSPatrick Sanan .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_DETERMINE 340d382aafbSBarry Smith 341d382aafbSBarry Smith M*/ 3420298fd71SBarry Smith #define PETSC_IGNORE NULL 343d382aafbSBarry Smith 344c528d872SBarry Smith /* This is deprecated */ 345c528d872SBarry Smith #define PETSC_NULL NULL 346c528d872SBarry Smith 347d382aafbSBarry Smith /*MC 348557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 349557d4da8SBarry Smith where you wish PETSc to use the default. 350557d4da8SBarry Smith 351557d4da8SBarry Smith Level: beginner 352557d4da8SBarry Smith 353e28ce29aSPatrick Sanan .seealso: PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 354557d4da8SBarry Smith 355557d4da8SBarry Smith M*/ 356557d4da8SBarry Smith #define PETSC_DECIDE -1 357557d4da8SBarry Smith 358557d4da8SBarry Smith /*MC 359d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 360d382aafbSBarry Smith where you wish PETSc to compute the required value. 361d382aafbSBarry Smith 362d382aafbSBarry Smith Level: beginner 363d382aafbSBarry Smith 364e28ce29aSPatrick Sanan Developer Note: 365e28ce29aSPatrick Sanan I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 366557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 367557d4da8SBarry Smith 3680298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 369d382aafbSBarry Smith 370d382aafbSBarry Smith M*/ 371d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 372d382aafbSBarry Smith 373d382aafbSBarry Smith /*MC 374557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 375557d4da8SBarry Smith where you wish PETSc to use the default. 376557d4da8SBarry Smith 377557d4da8SBarry Smith Level: beginner 378557d4da8SBarry Smith 379e28ce29aSPatrick Sanan Fortran Notes: 380e28ce29aSPatrick Sanan You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 381557d4da8SBarry Smith 3820298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 383557d4da8SBarry Smith 384557d4da8SBarry Smith M*/ 385557d4da8SBarry Smith #define PETSC_DEFAULT -2 386557d4da8SBarry Smith 387557d4da8SBarry Smith /*MC 388d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 389ea8fe74dSBarry Smith all the processes that PETSc knows about. 390d382aafbSBarry Smith 391d382aafbSBarry Smith Level: beginner 392d382aafbSBarry Smith 393e28ce29aSPatrick Sanan Notes: 394e28ce29aSPatrick Sanan By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 395d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 396d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 397a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 398a990b902SBarry Smith 399a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 400a990b902SBarry Smith is called because it may not have a valid value yet. 401d382aafbSBarry Smith 402d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 403d382aafbSBarry Smith 404d382aafbSBarry Smith M*/ 405014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 406d382aafbSBarry Smith 407d382aafbSBarry Smith /*MC 408503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 409d382aafbSBarry Smith 410d382aafbSBarry Smith Level: beginner 411d382aafbSBarry Smith 412e28ce29aSPatrick Sanan Notes: 413e28ce29aSPatrick Sanan Do not USE/access or set this variable before PetscInitialize() has been called. 414a990b902SBarry Smith 415d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 416d382aafbSBarry Smith 417d382aafbSBarry Smith M*/ 418d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 419d382aafbSBarry Smith 420d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 421014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 422014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 4234cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 42482f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 425d382aafbSBarry Smith 426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 429d382aafbSBarry Smith 4307381773fSBarry Smith #if defined(PETSC_HAVE_CUDA) 4317381773fSBarry Smith PETSC_EXTERN PetscErrorCode PetscCUDAInitialize(MPI_Comm); 4327381773fSBarry Smith #endif 4337381773fSBarry Smith 434*540e20f2SPierre Jolivet #if defined(PETSC_HAVE_ELEMENTAL) 435*540e20f2SPierre Jolivet PETSC_EXTERN PetscErrorCode PetscElementalInitializePackage(void); 436*540e20f2SPierre Jolivet PETSC_EXTERN PetscErrorCode PetscElementalInitialized(PetscBool*); 437*540e20f2SPierre Jolivet PETSC_EXTERN PetscErrorCode PetscElementalFinalizePackage(void); 438*540e20f2SPierre Jolivet #endif 439*540e20f2SPierre Jolivet 440d382aafbSBarry Smith /*MC 44195dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 442d382aafbSBarry Smith 443eca87e8dSBarry Smith Synopsis: 444aaa7dc30SBarry Smith #include <petscsys.h> 445eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 446eca87e8dSBarry Smith 447eca87e8dSBarry Smith Not Collective 448eca87e8dSBarry Smith 449d382aafbSBarry Smith Input Parameter: 450d382aafbSBarry Smith . m - number of bytes to allocate 451d382aafbSBarry Smith 452d382aafbSBarry Smith Output Parameter: 453d382aafbSBarry Smith . result - memory allocated 454d382aafbSBarry Smith 455d382aafbSBarry Smith Level: beginner 456d382aafbSBarry Smith 45749d7da52SJed Brown Notes: 45849d7da52SJed Brown Memory is always allocated at least double aligned 459d382aafbSBarry Smith 46049d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 461d382aafbSBarry Smith 462d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 463d382aafbSBarry Smith 464d382aafbSBarry Smith M*/ 465071fcb05SBarry Smith #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 466d382aafbSBarry Smith 467d382aafbSBarry Smith /*MC 4683221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 4693221ece2SMatthew G. Knepley 4703221ece2SMatthew G. Knepley Synopsis: 4713221ece2SMatthew G. Knepley #include <petscsys.h> 4723221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 4733221ece2SMatthew G. Knepley 4743221ece2SMatthew G. Knepley Not Collective 4753221ece2SMatthew G. Knepley 4763221ece2SMatthew G. Knepley Input Parameters: 4773221ece2SMatthew G. Knepley + m - number of bytes to allocate 47892f119d6SBarry Smith - result - previous memory 4793221ece2SMatthew G. Knepley 4803221ece2SMatthew G. Knepley Output Parameter: 4813221ece2SMatthew G. Knepley . result - new memory allocated 4823221ece2SMatthew G. Knepley 4833221ece2SMatthew G. Knepley Level: developer 4843221ece2SMatthew G. Knepley 4853221ece2SMatthew G. Knepley Notes: 4863221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 4873221ece2SMatthew G. Knepley 4883221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 4893221ece2SMatthew G. Knepley 4903221ece2SMatthew G. Knepley M*/ 4913221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 4923221ece2SMatthew G. Knepley 4933221ece2SMatthew G. Knepley /*MC 494503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 495d382aafbSBarry Smith 496d382aafbSBarry Smith Synopsis: 497aaa7dc30SBarry Smith #include <petscsys.h> 498d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 499d382aafbSBarry Smith 500eca87e8dSBarry Smith Not Collective 501eca87e8dSBarry Smith 502eca87e8dSBarry Smith Input Parameters: 503eca87e8dSBarry Smith . addr - address to align (any pointer type) 504eca87e8dSBarry Smith 505d382aafbSBarry Smith Level: developer 506d382aafbSBarry Smith 507d382aafbSBarry Smith .seealso: PetscMallocAlign() 508d382aafbSBarry Smith 509d382aafbSBarry Smith M*/ 510d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 511d382aafbSBarry Smith 512d382aafbSBarry Smith /*MC 513785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 514d382aafbSBarry Smith 515eca87e8dSBarry Smith Synopsis: 516aaa7dc30SBarry Smith #include <petscsys.h> 517785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 518785e854fSJed Brown 519785e854fSJed Brown Not Collective 520785e854fSJed Brown 521785e854fSJed Brown Input Parameter: 522390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 523785e854fSJed Brown 524785e854fSJed Brown Output Parameter: 5251fe1b817SJunchao Zhang . r1 - memory allocated 526785e854fSJed Brown 527e28ce29aSPatrick Sanan Note: 528e28ce29aSPatrick Sanan This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 529390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 530390e1bf2SBarry Smith $ PetscInt *id; 531390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 532390e1bf2SBarry Smith not 533390e1bf2SBarry Smith $ PetscInt *id; 534390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 535390e1bf2SBarry Smith 5361fe1b817SJunchao Zhang Does not zero the memory allocated, use PetscCalloc1() to obtain memory that has been zeroed. 537390e1bf2SBarry Smith 538390e1bf2SBarry Smith Level: beginner 539785e854fSJed Brown 5401795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 541785e854fSJed Brown 542785e854fSJed Brown M*/ 5432553b7ecSJed Brown #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 544785e854fSJed Brown 545785e854fSJed Brown /*MC 5461795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 5471795a4d1SJed Brown 5481795a4d1SJed Brown Synopsis: 549aaa7dc30SBarry Smith #include <petscsys.h> 5501795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 5511795a4d1SJed Brown 5521795a4d1SJed Brown Not Collective 5531795a4d1SJed Brown 5541795a4d1SJed Brown Input Parameter: 5551795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 5561795a4d1SJed Brown 5571795a4d1SJed Brown Output Parameter: 5581fe1b817SJunchao Zhang . r1 - memory allocated 5591795a4d1SJed Brown 560e28ce29aSPatrick Sanan Notes: 561e28ce29aSPatrick Sanan See PetsMalloc1() for more details on usage. 562390e1bf2SBarry Smith 563390e1bf2SBarry Smith Level: beginner 5641795a4d1SJed Brown 5651795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 5661795a4d1SJed Brown 5671795a4d1SJed Brown M*/ 5682553b7ecSJed Brown #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 5691795a4d1SJed Brown 5701795a4d1SJed Brown /*MC 571dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 572d382aafbSBarry Smith 573eca87e8dSBarry Smith Synopsis: 574aaa7dc30SBarry Smith #include <petscsys.h> 575dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 576eca87e8dSBarry Smith 577eca87e8dSBarry Smith Not Collective 578eca87e8dSBarry Smith 579d382aafbSBarry Smith Input Parameter: 580d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 581dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 582d382aafbSBarry Smith 583d382aafbSBarry Smith Output Parameter: 584d382aafbSBarry Smith + r1 - memory allocated in first chunk 585d382aafbSBarry Smith - r2 - memory allocated in second chunk 586d382aafbSBarry Smith 587d382aafbSBarry Smith Level: developer 588d382aafbSBarry Smith 5891795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 590d382aafbSBarry Smith 591d382aafbSBarry Smith M*/ 5922553b7ecSJed Brown #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 593d382aafbSBarry Smith 594d382aafbSBarry Smith /*MC 5951795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 596d382aafbSBarry Smith 597eca87e8dSBarry Smith Synopsis: 598aaa7dc30SBarry Smith #include <petscsys.h> 5991795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 600eca87e8dSBarry Smith 601eca87e8dSBarry Smith Not Collective 602eca87e8dSBarry Smith 603d382aafbSBarry Smith Input Parameter: 604d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6051795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6061795a4d1SJed Brown 6071795a4d1SJed Brown Output Parameter: 6081795a4d1SJed Brown + r1 - memory allocated in first chunk 6091795a4d1SJed Brown - r2 - memory allocated in second chunk 6101795a4d1SJed Brown 6111795a4d1SJed Brown Level: developer 6121795a4d1SJed Brown 6131795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 6141795a4d1SJed Brown 6151795a4d1SJed Brown M*/ 6162553b7ecSJed Brown #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 6171795a4d1SJed Brown 6181795a4d1SJed Brown /*MC 619dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 620d382aafbSBarry Smith 621d382aafbSBarry Smith Synopsis: 622aaa7dc30SBarry Smith #include <petscsys.h> 623dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 624d382aafbSBarry Smith 625d382aafbSBarry Smith Not Collective 626d382aafbSBarry Smith 627d382aafbSBarry Smith Input Parameter: 628d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 629d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 630dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 631d382aafbSBarry Smith 632d382aafbSBarry Smith Output Parameter: 633d382aafbSBarry Smith + r1 - memory allocated in first chunk 634d382aafbSBarry Smith . r2 - memory allocated in second chunk 635d382aafbSBarry Smith - r3 - memory allocated in third chunk 636d382aafbSBarry Smith 637d382aafbSBarry Smith Level: developer 638d382aafbSBarry Smith 6391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 640d382aafbSBarry Smith 641d382aafbSBarry Smith M*/ 6422553b7ecSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 643d382aafbSBarry Smith 644d382aafbSBarry Smith /*MC 6451795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 646d382aafbSBarry Smith 647eca87e8dSBarry Smith Synopsis: 648aaa7dc30SBarry Smith #include <petscsys.h> 6491795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 650eca87e8dSBarry Smith 651eca87e8dSBarry Smith Not Collective 652eca87e8dSBarry Smith 653d382aafbSBarry Smith Input Parameter: 654d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 655d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 6561795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 6571795a4d1SJed Brown 6581795a4d1SJed Brown Output Parameter: 6591795a4d1SJed Brown + r1 - memory allocated in first chunk 6601795a4d1SJed Brown . r2 - memory allocated in second chunk 6611795a4d1SJed Brown - r3 - memory allocated in third chunk 6621795a4d1SJed Brown 6631795a4d1SJed Brown Level: developer 6641795a4d1SJed Brown 6651795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 6661795a4d1SJed Brown 6671795a4d1SJed Brown M*/ 6682553b7ecSJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 6691795a4d1SJed Brown 6701795a4d1SJed Brown /*MC 671dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 672d382aafbSBarry Smith 673d382aafbSBarry Smith Synopsis: 674aaa7dc30SBarry Smith #include <petscsys.h> 675dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 676d382aafbSBarry Smith 677d382aafbSBarry Smith Not Collective 678d382aafbSBarry Smith 679d382aafbSBarry Smith Input Parameter: 680d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 681d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 682d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 683dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 684d382aafbSBarry Smith 685d382aafbSBarry Smith Output Parameter: 686d382aafbSBarry Smith + r1 - memory allocated in first chunk 687d382aafbSBarry Smith . r2 - memory allocated in second chunk 688d382aafbSBarry Smith . r3 - memory allocated in third chunk 689d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 690d382aafbSBarry Smith 691d382aafbSBarry Smith Level: developer 692d382aafbSBarry Smith 6931795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 694d382aafbSBarry Smith 695d382aafbSBarry Smith M*/ 6962553b7ecSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 697d382aafbSBarry Smith 698d382aafbSBarry Smith /*MC 6991795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 700d382aafbSBarry Smith 701eca87e8dSBarry Smith Synopsis: 702aaa7dc30SBarry Smith #include <petscsys.h> 7031795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 704eca87e8dSBarry Smith 705eca87e8dSBarry Smith Not Collective 706eca87e8dSBarry Smith 707e28ce29aSPatrick Sanan Input Parameters: 708d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 709d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 710d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 7111795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 7121795a4d1SJed Brown 713e28ce29aSPatrick Sanan Output Parameters: 7141795a4d1SJed Brown + r1 - memory allocated in first chunk 7151795a4d1SJed Brown . r2 - memory allocated in second chunk 7161795a4d1SJed Brown . r3 - memory allocated in third chunk 7171795a4d1SJed Brown - r4 - memory allocated in fourth chunk 7181795a4d1SJed Brown 7191795a4d1SJed Brown Level: developer 7201795a4d1SJed Brown 7211795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 7221795a4d1SJed Brown 7231795a4d1SJed Brown M*/ 7242553b7ecSJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 7251795a4d1SJed Brown 7261795a4d1SJed Brown /*MC 727dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 728d382aafbSBarry Smith 729d382aafbSBarry Smith Synopsis: 730aaa7dc30SBarry Smith #include <petscsys.h> 731dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 732d382aafbSBarry Smith 733d382aafbSBarry Smith Not Collective 734d382aafbSBarry Smith 735e28ce29aSPatrick Sanan Input Parameters: 736d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 737d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 738d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 739d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 740dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 741d382aafbSBarry Smith 742e28ce29aSPatrick Sanan Output Parameters: 743d382aafbSBarry Smith + r1 - memory allocated in first chunk 744d382aafbSBarry Smith . r2 - memory allocated in second chunk 745d382aafbSBarry Smith . r3 - memory allocated in third chunk 746d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 747d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 748d382aafbSBarry Smith 749d382aafbSBarry Smith Level: developer 750d382aafbSBarry Smith 7511795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 752d382aafbSBarry Smith 753d382aafbSBarry Smith M*/ 7542553b7ecSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 755d382aafbSBarry Smith 756d382aafbSBarry Smith /*MC 7571795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 758d382aafbSBarry Smith 759eca87e8dSBarry Smith Synopsis: 760aaa7dc30SBarry Smith #include <petscsys.h> 7611795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 762eca87e8dSBarry Smith 763eca87e8dSBarry Smith Not Collective 764eca87e8dSBarry Smith 765e28ce29aSPatrick Sanan Input Parameters: 766d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 767d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 768d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 769d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 7701795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 7711795a4d1SJed Brown 772e28ce29aSPatrick Sanan Output Parameters: 7731795a4d1SJed Brown + r1 - memory allocated in first chunk 7741795a4d1SJed Brown . r2 - memory allocated in second chunk 7751795a4d1SJed Brown . r3 - memory allocated in third chunk 7761795a4d1SJed Brown . r4 - memory allocated in fourth chunk 7771795a4d1SJed Brown - r5 - memory allocated in fifth chunk 7781795a4d1SJed Brown 7791795a4d1SJed Brown Level: developer 7801795a4d1SJed Brown 7811795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 7821795a4d1SJed Brown 7831795a4d1SJed Brown M*/ 7842553b7ecSJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 785d382aafbSBarry Smith 786d382aafbSBarry Smith /*MC 787dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 788d382aafbSBarry Smith 789d382aafbSBarry Smith Synopsis: 790aaa7dc30SBarry Smith #include <petscsys.h> 791dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 792d382aafbSBarry Smith 793d382aafbSBarry Smith Not Collective 794d382aafbSBarry Smith 795e28ce29aSPatrick Sanan Input Parameters: 796d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 797d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 798d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 799d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 800d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 801dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 802d382aafbSBarry Smith 803e28ce29aSPatrick Sanan Output Parameteasr: 804d382aafbSBarry Smith + r1 - memory allocated in first chunk 805d382aafbSBarry Smith . r2 - memory allocated in second chunk 806d382aafbSBarry Smith . r3 - memory allocated in third chunk 807d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 808d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 809d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 810d382aafbSBarry Smith 811d382aafbSBarry Smith Level: developer 812d382aafbSBarry Smith 8131795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 814d382aafbSBarry Smith 815d382aafbSBarry Smith M*/ 8162553b7ecSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 817d382aafbSBarry Smith 818d382aafbSBarry Smith /*MC 8191795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 820d382aafbSBarry Smith 821eca87e8dSBarry Smith Synopsis: 822aaa7dc30SBarry Smith #include <petscsys.h> 8231795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 824eca87e8dSBarry Smith 825eca87e8dSBarry Smith Not Collective 826eca87e8dSBarry Smith 827e28ce29aSPatrick Sanan Input Parameters: 828d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 829d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 830d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 831d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 832d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 8331795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 8341795a4d1SJed Brown 835e28ce29aSPatrick Sanan Output Parameters: 8361795a4d1SJed Brown + r1 - memory allocated in first chunk 8371795a4d1SJed Brown . r2 - memory allocated in second chunk 8381795a4d1SJed Brown . r3 - memory allocated in third chunk 8391795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8401795a4d1SJed Brown . r5 - memory allocated in fifth chunk 8411795a4d1SJed Brown - r6 - memory allocated in sixth chunk 8421795a4d1SJed Brown 8431795a4d1SJed Brown Level: developer 8441795a4d1SJed Brown 8451795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 8461795a4d1SJed Brown 8471795a4d1SJed Brown M*/ 8482553b7ecSJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 8491795a4d1SJed Brown 8501795a4d1SJed Brown /*MC 851dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 852d382aafbSBarry Smith 853d382aafbSBarry Smith Synopsis: 854aaa7dc30SBarry Smith #include <petscsys.h> 855dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 856d382aafbSBarry Smith 857d382aafbSBarry Smith Not Collective 858d382aafbSBarry Smith 859e28ce29aSPatrick Sanan Input Parameters: 860d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 861d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 862d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 863d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 864d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 865d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 866dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 867d382aafbSBarry Smith 868e28ce29aSPatrick Sanan Output Parameters: 869d382aafbSBarry Smith + r1 - memory allocated in first chunk 870d382aafbSBarry Smith . r2 - memory allocated in second chunk 871d382aafbSBarry Smith . r3 - memory allocated in third chunk 872d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 873d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 874d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 875eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 876d382aafbSBarry Smith 877d382aafbSBarry Smith Level: developer 878d382aafbSBarry Smith 8791795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 880d382aafbSBarry Smith 881d382aafbSBarry Smith M*/ 8822553b7ecSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 883d382aafbSBarry Smith 884d382aafbSBarry Smith /*MC 8851795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 8861795a4d1SJed Brown 8871795a4d1SJed Brown Synopsis: 888aaa7dc30SBarry Smith #include <petscsys.h> 8891795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 8901795a4d1SJed Brown 8911795a4d1SJed Brown Not Collective 8921795a4d1SJed Brown 893e28ce29aSPatrick Sanan Input Parameters: 8941795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 8951795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 8961795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 8971795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 8981795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 8991795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 9001795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 9011795a4d1SJed Brown 902e28ce29aSPatrick Sanan Output Parameters: 9031795a4d1SJed Brown + r1 - memory allocated in first chunk 9041795a4d1SJed Brown . r2 - memory allocated in second chunk 9051795a4d1SJed Brown . r3 - memory allocated in third chunk 9061795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9071795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9081795a4d1SJed Brown . r6 - memory allocated in sixth chunk 9091795a4d1SJed Brown - r7 - memory allocated in seventh chunk 9101795a4d1SJed Brown 9111795a4d1SJed Brown Level: developer 9121795a4d1SJed Brown 9131795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 9141795a4d1SJed Brown 9151795a4d1SJed Brown M*/ 9162553b7ecSJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 9171795a4d1SJed Brown 9181795a4d1SJed Brown /*MC 919503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 920d382aafbSBarry Smith 921eca87e8dSBarry Smith Synopsis: 922aaa7dc30SBarry Smith #include <petscsys.h> 923b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 924eca87e8dSBarry Smith 925eca87e8dSBarry Smith Not Collective 926eca87e8dSBarry Smith 927d382aafbSBarry Smith Output Parameter: 928b00a9115SJed Brown . result - memory allocated, sized to match pointer type 929d382aafbSBarry Smith 930d382aafbSBarry Smith Level: beginner 931d382aafbSBarry Smith 932390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 933d382aafbSBarry Smith 934d382aafbSBarry Smith M*/ 935b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 936ad0619ddSBarry Smith 937ad0619ddSBarry Smith /*MC 938b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 939ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 940ad0619ddSBarry Smith 941ad0619ddSBarry Smith Synopsis: 942aaa7dc30SBarry Smith #include <petscsys.h> 943b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 944ad0619ddSBarry Smith 945ad0619ddSBarry Smith Not Collective 946ad0619ddSBarry Smith 947ad0619ddSBarry Smith Input Parameter: 948b00a9115SJed Brown . obj - object memory is logged to 949ad0619ddSBarry Smith 950ad0619ddSBarry Smith Output Parameter: 951b00a9115SJed Brown . result - memory allocated, sized to match pointer type 952ad0619ddSBarry Smith 953ad0619ddSBarry Smith Level: developer 954ad0619ddSBarry Smith 955390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 956ad0619ddSBarry Smith 957ad0619ddSBarry Smith M*/ 958d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 959d382aafbSBarry Smith 960d382aafbSBarry Smith /*MC 961d382aafbSBarry Smith PetscFree - Frees memory 962d382aafbSBarry Smith 963eca87e8dSBarry Smith Synopsis: 964aaa7dc30SBarry Smith #include <petscsys.h> 965eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 966eca87e8dSBarry Smith 967eca87e8dSBarry Smith Not Collective 968eca87e8dSBarry Smith 969d382aafbSBarry Smith Input Parameter: 9707f4976b7SJacob Faibussowitsch . memory - memory to free (the pointer is ALWAYS set to NULL upon success) 971d382aafbSBarry Smith 972d382aafbSBarry Smith Level: beginner 973d382aafbSBarry Smith 97449d7da52SJed Brown Notes: 975390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 976390e1bf2SBarry Smith 97749d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 978d382aafbSBarry Smith 979390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 980d382aafbSBarry Smith 981d382aafbSBarry Smith M*/ 982ffc31a0eSLisandro Dalcin #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = NULL,0)) 983d382aafbSBarry Smith 984d382aafbSBarry Smith /*MC 985d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 986d382aafbSBarry Smith 987eca87e8dSBarry Smith Synopsis: 988aaa7dc30SBarry Smith #include <petscsys.h> 989eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 990eca87e8dSBarry Smith 991eca87e8dSBarry Smith Not Collective 992eca87e8dSBarry Smith 993e28ce29aSPatrick Sanan Input Parameters: 994d382aafbSBarry Smith + memory1 - memory to free 995d382aafbSBarry Smith - memory2 - 2nd memory to free 996d382aafbSBarry Smith 997d382aafbSBarry Smith Level: developer 998d382aafbSBarry Smith 99995452b02SPatrick Sanan Notes: 100095452b02SPatrick Sanan Memory must have been obtained with PetscMalloc2() 1001d382aafbSBarry Smith 1002d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith M*/ 1005ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith /*MC 1008d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1009d382aafbSBarry Smith 1010eca87e8dSBarry Smith Synopsis: 1011aaa7dc30SBarry Smith #include <petscsys.h> 1012eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1013eca87e8dSBarry Smith 1014eca87e8dSBarry Smith Not Collective 1015eca87e8dSBarry Smith 1016e28ce29aSPatrick Sanan Input Parameters: 1017d382aafbSBarry Smith + memory1 - memory to free 1018d382aafbSBarry Smith . memory2 - 2nd memory to free 1019d382aafbSBarry Smith - memory3 - 3rd memory to free 1020d382aafbSBarry Smith 1021d382aafbSBarry Smith Level: developer 1022d382aafbSBarry Smith 102395452b02SPatrick Sanan Notes: 102495452b02SPatrick Sanan Memory must have been obtained with PetscMalloc3() 1025d382aafbSBarry Smith 1026d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1027d382aafbSBarry Smith 1028d382aafbSBarry Smith M*/ 1029ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1030d382aafbSBarry Smith 1031d382aafbSBarry Smith /*MC 1032d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1033d382aafbSBarry Smith 1034eca87e8dSBarry Smith Synopsis: 1035aaa7dc30SBarry Smith #include <petscsys.h> 1036eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1037eca87e8dSBarry Smith 1038eca87e8dSBarry Smith Not Collective 1039eca87e8dSBarry Smith 1040e28ce29aSPatrick Sanan Input Parameters: 1041d382aafbSBarry Smith + m1 - memory to free 1042d382aafbSBarry Smith . m2 - 2nd memory to free 1043d382aafbSBarry Smith . m3 - 3rd memory to free 1044d382aafbSBarry Smith - m4 - 4th memory to free 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith Level: developer 1047d382aafbSBarry Smith 104895452b02SPatrick Sanan Notes: 104995452b02SPatrick Sanan Memory must have been obtained with PetscMalloc4() 1050d382aafbSBarry Smith 1051d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1052d382aafbSBarry Smith 1053d382aafbSBarry Smith M*/ 1054ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1055d382aafbSBarry Smith 1056d382aafbSBarry Smith /*MC 1057d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1058d382aafbSBarry Smith 1059eca87e8dSBarry Smith Synopsis: 1060aaa7dc30SBarry Smith #include <petscsys.h> 1061eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1062eca87e8dSBarry Smith 1063eca87e8dSBarry Smith Not Collective 1064eca87e8dSBarry Smith 1065e28ce29aSPatrick Sanan Input Parameters: 1066d382aafbSBarry Smith + m1 - memory to free 1067d382aafbSBarry Smith . m2 - 2nd memory to free 1068d382aafbSBarry Smith . m3 - 3rd memory to free 1069d382aafbSBarry Smith . m4 - 4th memory to free 1070d382aafbSBarry Smith - m5 - 5th memory to free 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith Level: developer 1073d382aafbSBarry Smith 107495452b02SPatrick Sanan Notes: 107595452b02SPatrick Sanan Memory must have been obtained with PetscMalloc5() 1076d382aafbSBarry Smith 1077d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith M*/ 1080ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1081d382aafbSBarry Smith 1082d382aafbSBarry Smith /*MC 1083d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1084d382aafbSBarry Smith 1085eca87e8dSBarry Smith Synopsis: 1086aaa7dc30SBarry Smith #include <petscsys.h> 1087eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1088eca87e8dSBarry Smith 1089eca87e8dSBarry Smith Not Collective 1090eca87e8dSBarry Smith 1091e28ce29aSPatrick Sanan Input Parameters: 1092d382aafbSBarry Smith + m1 - memory to free 1093d382aafbSBarry Smith . m2 - 2nd memory to free 1094d382aafbSBarry Smith . m3 - 3rd memory to free 1095d382aafbSBarry Smith . m4 - 4th memory to free 1096d382aafbSBarry Smith . m5 - 5th memory to free 1097d382aafbSBarry Smith - m6 - 6th memory to free 1098d382aafbSBarry Smith 1099d382aafbSBarry Smith 1100d382aafbSBarry Smith Level: developer 1101d382aafbSBarry Smith 110295452b02SPatrick Sanan Notes: 110395452b02SPatrick Sanan Memory must have been obtained with PetscMalloc6() 1104d382aafbSBarry Smith 1105d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1106d382aafbSBarry Smith 1107d382aafbSBarry Smith M*/ 1108ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1109d382aafbSBarry Smith 1110d382aafbSBarry Smith /*MC 1111d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1112d382aafbSBarry Smith 1113eca87e8dSBarry Smith Synopsis: 1114aaa7dc30SBarry Smith #include <petscsys.h> 1115eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1116eca87e8dSBarry Smith 1117eca87e8dSBarry Smith Not Collective 1118eca87e8dSBarry Smith 1119e28ce29aSPatrick Sanan Input Parameters: 1120d382aafbSBarry Smith + m1 - memory to free 1121d382aafbSBarry Smith . m2 - 2nd memory to free 1122d382aafbSBarry Smith . m3 - 3rd memory to free 1123d382aafbSBarry Smith . m4 - 4th memory to free 1124d382aafbSBarry Smith . m5 - 5th memory to free 1125d382aafbSBarry Smith . m6 - 6th memory to free 1126d382aafbSBarry Smith - m7 - 7th memory to free 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith Level: developer 1130d382aafbSBarry Smith 113195452b02SPatrick Sanan Notes: 113295452b02SPatrick Sanan Memory must have been obtained with PetscMalloc7() 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1135d382aafbSBarry Smith PetscMalloc7() 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith M*/ 1138ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1139d382aafbSBarry Smith 1140ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1141ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1142071fcb05SBarry Smith PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,PetscBool,int,const char[],const char[],void**); 1143efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 11443221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1145ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 114692f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,PetscBool,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[]),PetscErrorCode (*)(size_t,int,const char[],const char[], void **)); 1147014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith /* 1150c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1151c1706be6SHong Zhang */ 1152c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1153c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 115431f06eaaSHong Zhang #if defined(PETSC_HAVE_CUDA) 115531f06eaaSHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetCUDAHost(void); 115631f06eaaSHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetCUDAHost(void); 115731f06eaaSHong Zhang #endif 1158c1706be6SHong Zhang 1159a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 116036763ca0SBas van 't Hof #define MPIU_2PETSCLOGDOUBLE MPI_2DOUBLE_PRECISION 1161a5057860SBarry Smith 1162a5057860SBarry Smith /* 116366d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1164d382aafbSBarry Smith */ 1165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 116692f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocView(FILE *); 1167014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1168014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1169e3ed9ee7SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocPushMaximumUsage(int); 1170e3ed9ee7SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocPopMaximumUsage(int,PetscLogDouble*); 117192f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocSetDebug(PetscBool,PetscBool); 117292f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*,PetscBool*,PetscBool*); 1173efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 117492f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocViewSet(PetscLogDouble); 117592f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocViewGet(PetscBool*); 1176d382aafbSBarry Smith 11776a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1178014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1179014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1180014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 11818e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1182d382aafbSBarry Smith 1183d382aafbSBarry Smith /* 1184d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1185d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1186d382aafbSBarry Smith functionality and/or error checking. 1187d382aafbSBarry Smith */ 1188014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1189014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1190014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1191d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1192014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1193014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1194014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1195014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1196014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1197014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1198014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1199a126751eSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrlcat(char[],const char[],size_t); 1200014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1201014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1202014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 12032f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1204014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1205014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1206014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1207014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 12082c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1209014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1210014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 121147340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 12126fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 12136991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 12146991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1215014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1216d382aafbSBarry Smith 1217573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1218573b0fb4SBarry Smith 1219014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1220014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1221014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1222d382aafbSBarry Smith 1223e94e781bSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscStrInList(const char[],const char[],char,PetscBool*); 1224a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1225a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1226a53986e1SJed Brown 1227d382aafbSBarry Smith /* 1228d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1229d382aafbSBarry Smith */ 1230367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1231570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1232014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 12332414b3c7SJed Brown #else 12342414b3c7SJed Brown #define MPIU_SUM MPI_SUM 12352414b3c7SJed Brown #endif 1236570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1237014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1238014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1239d9822059SBarry Smith #else 1240d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1241d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1242d9822059SBarry Smith #endif 1243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1244d382aafbSBarry Smith 1245014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1246014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1247eb3f98d2SBarry Smith 124895c0884eSLisandro Dalcin PETSC_EXTERN const char *const PetscFileModes[]; 1249d6a4318aSJed Brown 1250639ff905SBarry Smith /* 1251639ff905SBarry Smith Defines PETSc error handling. 1252639ff905SBarry Smith */ 1253639ff905SBarry Smith #include <petscerror.h> 1254d382aafbSBarry Smith 12550700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1256014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1257014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1258014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 125981256985SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscObjectGetId(PetscObject,PetscObjectId*); 126081256985SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscObjectCompareId(PetscObject,PetscObjectId,PetscBool*); 126181256985SMatthew G. Knepley 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith /* 1264d382aafbSBarry Smith Routines that get memory usage information from the OS 1265d382aafbSBarry Smith */ 1266014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1267014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1268014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1269b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1270d382aafbSBarry Smith 1271014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1272d382aafbSBarry Smith 1273d382aafbSBarry Smith /* 1274d382aafbSBarry Smith Initialization of PETSc 1275d382aafbSBarry Smith */ 1276014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1277014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1280014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1281014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1282014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1283014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1284014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1285014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1286d382aafbSBarry Smith 1287014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1288607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1289d382aafbSBarry Smith 1290014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1291014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1292014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1293014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1294d382aafbSBarry Smith 1295a50e088cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscMonitorCompare(PetscErrorCode (*)(void),void *,PetscErrorCode (*)(void**),PetscErrorCode (*)(void),void *,PetscErrorCode (*)(void**),PetscBool *); 1296a50e088cSMatthew G. Knepley 1297a50e088cSMatthew G. Knepley 1298d382aafbSBarry Smith /* 1299d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 13002981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1301d382aafbSBarry Smith */ 1302638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1303638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1304638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1305d382aafbSBarry Smith 1306d382aafbSBarry Smith /* 1307d382aafbSBarry Smith Functions that can act on any PETSc object. 1308d382aafbSBarry Smith */ 1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1310014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1321014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1322014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1323014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1325014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1327bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1328bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 13310eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 13320eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1333014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1334d382aafbSBarry Smith 1335665c2dedSJed Brown #include <petscviewertypes.h> 1336639ff905SBarry Smith #include <petscoptions.h> 1337639ff905SBarry Smith 13380633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 13390633abcbSJed Brown 1340639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1341c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1342dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1343639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 13440005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 13450005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1353685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1355014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 13564099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1358b9e7e5c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1361d382aafbSBarry Smith 1362e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 13637aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1364e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1365e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1366e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1367e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1368e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1369e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1370e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1371e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1372e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 137315681b3cSBarry Smith 1374ec7429eaSBarry Smith #else 13757aab2a10SBarry Smith #define PetscSAWsBlock() 0 1376e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1377e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1378e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1379e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1380e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1381e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1382e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1383e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1384e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 138515681b3cSBarry Smith 1386ec7429eaSBarry Smith #endif 1387b90c6cbeSBarry Smith 138882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 138982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 139082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 13917d5d4d99SBarry Smith 13925fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1393a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 13945fe58b6fSBarry Smith #endif 13957eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1396a64a8e02SBarry Smith 1397140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1398140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1399140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1400140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1401140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1402140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1403d382aafbSBarry Smith 1404d382aafbSBarry Smith /* 1405503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1406d382aafbSBarry Smith link libraries that will be loaded as needed. 1407d382aafbSBarry Smith */ 1408a240a19fSJed Brown 1409a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1410a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1411140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 14121c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 14131c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 141444ef3d73SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[],const char[]); 1415140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1416140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1417140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1418d382aafbSBarry Smith 1419014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1427d382aafbSBarry Smith 1428d382aafbSBarry Smith /* 1429d382aafbSBarry Smith Useful utility routines 1430d382aafbSBarry Smith */ 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 14376ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxInt(MPI_Comm,PetscInt[],PetscInt[]); 14386ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxReal(MPI_Comm,PetscReal[],PetscReal[]); 1439d382aafbSBarry Smith 144064ac3b0dSPatrick Sanan /*MC 1441ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1442503cfb0cSBarry Smith 1443e28ce29aSPatrick Sanan Notes: 1444e28ce29aSPatrick Sanan This is useful in cases like 1445503cfb0cSBarry Smith $ int *a; 1446ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 14471cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 144864ac3b0dSPatrick Sanan 144964ac3b0dSPatrick Sanan Level: beginner 145064ac3b0dSPatrick Sanan 145164ac3b0dSPatrick Sanan .seealso : PetscBool, PETSC_TRUE, PETSC_FALSE 145264ac3b0dSPatrick Sanan M*/ 1453d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1454503cfb0cSBarry Smith 1455d382aafbSBarry Smith /*MC 1456d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1457d382aafbSBarry Smith 1458d382aafbSBarry Smith Synopsis: 1459aaa7dc30SBarry Smith #include <petscsys.h> 1460d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1461d382aafbSBarry Smith 1462eca87e8dSBarry Smith Not Collective 1463eca87e8dSBarry Smith 1464d382aafbSBarry Smith Input Parameters: 1465d382aafbSBarry Smith . format - the usual printf() format string 1466d382aafbSBarry Smith 1467d382aafbSBarry Smith Level: developer 1468d382aafbSBarry Smith 1469d382aafbSBarry Smith Fortran Note: 1470d382aafbSBarry Smith This routine is not supported in Fortran. 1471d382aafbSBarry Smith 1472d382aafbSBarry Smith 1473d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1474d382aafbSBarry Smith M*/ 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1476d382aafbSBarry Smith 1477fcfd50ebSBarry Smith /* 1478fcfd50ebSBarry Smith Defines PETSc profiling. 1479fcfd50ebSBarry Smith */ 14802c8e378dSBarry Smith #include <petsclog.h> 1481fcfd50ebSBarry Smith 1482fcfd50ebSBarry Smith /* 1483fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1484fcfd50ebSBarry Smith */ 1485014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1487014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1488014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1489014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 14921b5687a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFormatRealArray(char[],size_t,const char*,PetscInt,const PetscReal[]); 1493fcfd50ebSBarry Smith 1494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1497d382aafbSBarry Smith 1498d781fa04SBarry Smith PETSC_EXTERN PetscErrorCode PetscFormatConvertGetSize(const char*,size_t*); 1499d781fa04SBarry Smith PETSC_EXTERN PetscErrorCode PetscFormatConvert(const char*,char *); 1500d781fa04SBarry Smith 1501d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1502014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1503016831caSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*); 150474ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1505d382aafbSBarry Smith #endif 1506d382aafbSBarry Smith 1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1508014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 15090ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1510014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1511014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1512014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1513014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1514d382aafbSBarry Smith 1515014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1516014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1519014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1521b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1522d382aafbSBarry Smith 1523d382aafbSBarry Smith /* 1524d382aafbSBarry Smith For use in debuggers 1525d382aafbSBarry Smith */ 1526014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1527014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1531d382aafbSBarry Smith 1532a663daf8SBarry Smith #include <stddef.h> 1533a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1534d382aafbSBarry Smith #include <stdlib.h> 15356c7e564aSBarry Smith 15364a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1537d382aafbSBarry Smith #include <xmmintrin.h> 1538d382aafbSBarry Smith #endif 1539d382aafbSBarry Smith 1540d382aafbSBarry Smith /*@C 1541580bdb30SBarry Smith PetscMemmove - Copies n bytes, beginning at location b, to the space 1542580bdb30SBarry Smith beginning at location a. Copying between regions that overlap will 1543580bdb30SBarry Smith take place correctly. Use PetscMemcpy() if the locations do not overlap 1544580bdb30SBarry Smith 1545580bdb30SBarry Smith Not Collective 1546580bdb30SBarry Smith 1547580bdb30SBarry Smith Input Parameters: 1548580bdb30SBarry Smith + b - pointer to initial memory space 1549580bdb30SBarry Smith . a - pointer to copy space 1550580bdb30SBarry Smith - n - length (in bytes) of space to copy 1551580bdb30SBarry Smith 1552580bdb30SBarry Smith Level: intermediate 1553580bdb30SBarry Smith 1554580bdb30SBarry Smith Note: 1555857a15f1SBarry Smith PetscArraymove() is preferred 1556580bdb30SBarry Smith This routine is analogous to memmove(). 1557580bdb30SBarry Smith 1558580bdb30SBarry Smith Developers Note: This is inlined for performance 1559580bdb30SBarry Smith 1560580bdb30SBarry Smith .seealso: PetscMemcpy(), PetscMemcmp(), PetscArrayzero(), PetscMemzero(), PetscArraycmp(), PetscArraycpy(), PetscStrallocpy(), 1561580bdb30SBarry Smith PetscArraymove() 1562580bdb30SBarry Smith @*/ 1563580bdb30SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemmove(void *a,const void *b,size_t n) 1564580bdb30SBarry Smith { 1565580bdb30SBarry Smith PetscFunctionBegin; 1566580bdb30SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to null pointer"); 1567580bdb30SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1568580bdb30SBarry Smith #if !defined(PETSC_HAVE_MEMMOVE) 1569580bdb30SBarry Smith if (a < b) { 1570580bdb30SBarry Smith if (a <= b - n) memcpy(a,b,n); 1571580bdb30SBarry Smith else { 1572580bdb30SBarry Smith memcpy(a,b,(int)(b - a)); 1573580bdb30SBarry Smith PetscMemmove(b,b + (int)(b - a),n - (int)(b - a)); 1574580bdb30SBarry Smith } 1575580bdb30SBarry Smith } else { 1576580bdb30SBarry Smith if (b <= a - n) memcpy(a,b,n); 1577580bdb30SBarry Smith else { 1578580bdb30SBarry Smith memcpy(b + n,b + (n - (int)(a - b)),(int)(a - b)); 1579580bdb30SBarry Smith PetscMemmove(a,b,n - (int)(a - b)); 1580580bdb30SBarry Smith } 1581580bdb30SBarry Smith } 1582580bdb30SBarry Smith #else 1583580bdb30SBarry Smith memmove((char*)(a),(char*)(b),n); 1584580bdb30SBarry Smith #endif 1585580bdb30SBarry Smith PetscFunctionReturn(0); 1586580bdb30SBarry Smith } 1587580bdb30SBarry Smith 1588d382aafbSBarry Smith /*@C 1589d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1590d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1591d382aafbSBarry Smith PetscMemmove() in that case. 1592d382aafbSBarry Smith 1593d382aafbSBarry Smith Not Collective 1594d382aafbSBarry Smith 1595d382aafbSBarry Smith Input Parameters: 1596d382aafbSBarry Smith + b - pointer to initial memory space 1597d382aafbSBarry Smith - n - length (in bytes) of space to copy 1598d382aafbSBarry Smith 1599d382aafbSBarry Smith Output Parameter: 1600d382aafbSBarry Smith . a - pointer to copy space 1601d382aafbSBarry Smith 1602d382aafbSBarry Smith Level: intermediate 1603d382aafbSBarry Smith 1604d382aafbSBarry Smith Compile Option: 1605d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1606d382aafbSBarry Smith for memory copies on double precision values. 1607d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1608d382aafbSBarry Smith for memory copies on double precision values. 1609d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1610d382aafbSBarry Smith for memory copies on double precision values. 1611d382aafbSBarry Smith 1612d382aafbSBarry Smith Note: 1613580bdb30SBarry Smith Prefer PetscArraycpy() 1614d382aafbSBarry Smith This routine is analogous to memcpy(). 16151fd49c25SBarry Smith Not available from Fortran 16161fd49c25SBarry Smith 1617f5f57ec0SBarry Smith Developer Note: this is inlined for fastest performance 1618f5f57ec0SBarry Smith 1619580bdb30SBarry Smith .seealso: PetscMemzero(), PetscMemcmp(), PetscArrayzero(), PetscArraycmp(), PetscArraycpy(), PetscMemmove(), PetscStrallocpy() 1620d382aafbSBarry Smith 1621d382aafbSBarry Smith @*/ 16227087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1623d382aafbSBarry Smith { 1624d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1625c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1626c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1627a7e36092SMatthew G Knepley PetscFunctionBegin; 1628e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1629e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1630a7e36092SMatthew G Knepley #else 1631d382aafbSBarry Smith PetscFunctionBegin; 1632a7e36092SMatthew G Knepley #endif 1633a47a537aSLisandro Dalcin if (a != b && n > 0) { 1634d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1635e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1636d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1637d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1638d382aafbSBarry Smith #endif 1639d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1640c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1641d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1642d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1643c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1644c5df96a5SBarry Smith PetscErrorCode ierr; 1645c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 16468b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1647d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1648d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1649d382aafbSBarry Smith #else 1650d382aafbSBarry Smith size_t i; 1651d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1652d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1653d382aafbSBarry Smith #endif 1654d382aafbSBarry Smith } else { 1655d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1656d382aafbSBarry Smith } 1657d382aafbSBarry Smith #else 1658d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1659d382aafbSBarry Smith #endif 1660d382aafbSBarry Smith } 1661d382aafbSBarry Smith PetscFunctionReturn(0); 1662d382aafbSBarry Smith } 1663d382aafbSBarry Smith 1664d382aafbSBarry Smith /*@C 1665d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1666d382aafbSBarry Smith 1667d382aafbSBarry Smith Not Collective 1668d382aafbSBarry Smith 1669d382aafbSBarry Smith Input Parameters: 1670d382aafbSBarry Smith + a - pointer to beginning memory location 1671d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1672d382aafbSBarry Smith 1673d382aafbSBarry Smith Level: intermediate 1674d382aafbSBarry Smith 1675d382aafbSBarry Smith Compile Option: 1676d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1677d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1678d382aafbSBarry Smith 16791fd49c25SBarry Smith Not available from Fortran 1680857a15f1SBarry Smith Prefer PetscArrayzero() 16811fd49c25SBarry Smith 1682503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1683503cfb0cSBarry Smith 1684580bdb30SBarry Smith .seealso: PetscMemcpy(), PetscMemcmp(), PetscArrayzero(), PetscArraycmp(), PetscArraycpy(), PetscMemmove(), PetscStrallocpy() 1685d382aafbSBarry Smith @*/ 16867087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1687d382aafbSBarry Smith { 1688d382aafbSBarry Smith if (n > 0) { 1689d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1690e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1691d382aafbSBarry Smith #endif 1692d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1693d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1694d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1695d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1696d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1697d382aafbSBarry Smith } else { 1698d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1699d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1700d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1701d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1702d382aafbSBarry Smith } else { 1703d382aafbSBarry Smith #endif 1704d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1705d382aafbSBarry Smith bzero((char *)a,n); 1706d382aafbSBarry Smith #else 1707d382aafbSBarry Smith memset((char*)a,0,n); 1708d382aafbSBarry Smith #endif 1709d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1710d382aafbSBarry Smith } 1711d382aafbSBarry Smith #endif 1712d382aafbSBarry Smith } 1713d382aafbSBarry Smith return 0; 1714d382aafbSBarry Smith } 1715d382aafbSBarry Smith 1716d382aafbSBarry Smith /*MC 1717580bdb30SBarry Smith PetscArraycmp - Compares two arrays in memory. 1718580bdb30SBarry Smith 1719580bdb30SBarry Smith Synopsis: 1720580bdb30SBarry Smith #include <petscsys.h> 1721580bdb30SBarry Smith PetscErrorCode PetscArraycmp(const anytype *str1,const anytype *str2,size_t cnt,PetscBool *e) 1722580bdb30SBarry Smith 1723580bdb30SBarry Smith Not Collective 1724580bdb30SBarry Smith 1725580bdb30SBarry Smith Input Parameters: 1726580bdb30SBarry Smith + str1 - First array 1727580bdb30SBarry Smith . str2 - Second array 1728580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the arrays 1729580bdb30SBarry Smith 1730580bdb30SBarry Smith Output Parameters: 1731580bdb30SBarry Smith . e - PETSC_TRUE if equal else PETSC_FALSE. 1732580bdb30SBarry Smith 1733580bdb30SBarry Smith Level: intermediate 1734580bdb30SBarry Smith 1735580bdb30SBarry Smith Note: 1736857a15f1SBarry Smith This routine is a preferred replacement to PetscMemcmp() 1737580bdb30SBarry Smith The arrays must be of the same type 1738580bdb30SBarry Smith 1739580bdb30SBarry Smith .seealso: PetscMemcpy(), PetscMemcmp(), PetscArrayzero(), PetscMemzero(), PetscArraycpy(), PetscMemmove(), PetscStrallocpy(), 1740580bdb30SBarry Smith PetscArraymove() 1741580bdb30SBarry Smith M*/ 17429e2232c7SLisandro Dalcin #define PetscArraycmp(str1,str2,cnt,e) ((sizeof(*(str1)) != sizeof(*(str2))) || PetscMemcmp(str1,str2,(size_t)(cnt)*sizeof(*(str1)),e)) 1743580bdb30SBarry Smith 17448f8f2f0dSBarry Smith /*MC 1745580bdb30SBarry Smith PetscArraymove - Copies from one array in memory to another, the arrays may overlap. Use PetscArraycpy() when the arrays 1746580bdb30SBarry Smith do not overlap 1747580bdb30SBarry Smith 1748580bdb30SBarry Smith Synopsis: 1749580bdb30SBarry Smith #include <petscsys.h> 1750580bdb30SBarry Smith PetscErrorCode PetscArraymove(anytype *str1,const anytype *str2,size_t cnt) 1751580bdb30SBarry Smith 1752580bdb30SBarry Smith Not Collective 1753580bdb30SBarry Smith 1754580bdb30SBarry Smith Input Parameters: 1755580bdb30SBarry Smith + str1 - First array 1756580bdb30SBarry Smith . str2 - Second array 1757580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the arrays 1758580bdb30SBarry Smith 1759580bdb30SBarry Smith Level: intermediate 1760580bdb30SBarry Smith 1761580bdb30SBarry Smith Note: 1762857a15f1SBarry Smith This routine is a preferred replacement to PetscMemmove() 1763580bdb30SBarry Smith The arrays must be of the same type 1764580bdb30SBarry Smith 1765580bdb30SBarry Smith .seealso: PetscMemcpy(), PetscMemcmp(), PetscArrayzero(), PetscMemzero(), PetscArraycpy(), PetscMemmove(), PetscArraycmp(), PetscStrallocpy() 1766580bdb30SBarry Smith M*/ 17679e2232c7SLisandro Dalcin #define PetscArraymove(str1,str2,cnt) ((sizeof(*(str1)) != sizeof(*(str2))) || PetscMemmove(str1,str2,(size_t)(cnt)*sizeof(*(str1)))) 1768580bdb30SBarry Smith 17698f8f2f0dSBarry Smith /*MC 1770580bdb30SBarry Smith PetscArraycpy - Copies from one array in memory to another 1771580bdb30SBarry Smith 1772580bdb30SBarry Smith Synopsis: 1773580bdb30SBarry Smith #include <petscsys.h> 1774580bdb30SBarry Smith PetscErrorCode PetscArraycpy(anytype *str1,const anytype *str2,size_t cnt) 1775580bdb30SBarry Smith 1776580bdb30SBarry Smith Not Collective 1777580bdb30SBarry Smith 1778580bdb30SBarry Smith Input Parameters: 1779de25709eSStefano Zampini + str1 - First array (destination) 1780de25709eSStefano Zampini . str2 - Second array (source) 1781580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the arrays 1782580bdb30SBarry Smith 1783580bdb30SBarry Smith Level: intermediate 1784580bdb30SBarry Smith 1785580bdb30SBarry Smith Note: 1786857a15f1SBarry Smith This routine is a preferred replacement to PetscMemcpy() 1787580bdb30SBarry Smith The arrays must be of the same type 1788580bdb30SBarry Smith 1789580bdb30SBarry Smith .seealso: PetscMemcpy(), PetscMemcmp(), PetscArrayzero(), PetscMemzero(), PetscArraymove(), PetscMemmove(), PetscArraycmp(), PetscStrallocpy() 1790580bdb30SBarry Smith M*/ 17919e2232c7SLisandro Dalcin #define PetscArraycpy(str1,str2,cnt) ((sizeof(*(str1)) != sizeof(*(str2))) || PetscMemcpy(str1,str2,(size_t)(cnt)*sizeof(*(str1)))) 1792580bdb30SBarry Smith 17938f8f2f0dSBarry Smith /*MC 1794580bdb30SBarry Smith PetscArrayzero - Zeros an array in memory. 1795580bdb30SBarry Smith 1796580bdb30SBarry Smith Synopsis: 1797580bdb30SBarry Smith #include <petscsys.h> 1798580bdb30SBarry Smith PetscErrorCode PetscArrayzero(anytype *str1,size_t cnt) 1799580bdb30SBarry Smith 1800580bdb30SBarry Smith Not Collective 1801580bdb30SBarry Smith 1802580bdb30SBarry Smith Input Parameters: 1803580bdb30SBarry Smith + str1 - array 1804580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the array 1805580bdb30SBarry Smith 1806580bdb30SBarry Smith Level: intermediate 1807580bdb30SBarry Smith 1808580bdb30SBarry Smith Note: 1809857a15f1SBarry Smith This routine is a preferred replacement to PetscMemzero() 1810580bdb30SBarry Smith 1811580bdb30SBarry Smith .seealso: PetscMemcpy(), PetscMemcmp(), PetscMemzero(), PetscArraycmp(), PetscArraycpy(), PetscMemmove(), PetscStrallocpy(), PetscArraymove() 1812580bdb30SBarry Smith M*/ 18139e2232c7SLisandro Dalcin #define PetscArrayzero(str1,cnt) PetscMemzero(str1,(size_t)(cnt)*sizeof(*(str1))) 1814580bdb30SBarry Smith 1815d382aafbSBarry Smith /*MC 1816d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1817d382aafbSBarry Smith 1818eca87e8dSBarry Smith Synopsis: 1819aaa7dc30SBarry Smith #include <petscsys.h> 1820eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1821eca87e8dSBarry Smith 1822d382aafbSBarry Smith Not Collective 1823d382aafbSBarry Smith 1824d382aafbSBarry Smith Input Parameters: 1825d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1826d382aafbSBarry Smith . n - number of elements to fetch 1827d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 182850d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1829d382aafbSBarry Smith 1830d382aafbSBarry Smith Level: developer 1831d382aafbSBarry Smith 1832d382aafbSBarry Smith Notes: 1833d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1834d382aafbSBarry Smith 183550d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 183650d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 183750d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 183863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 183963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 184063cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1841d382aafbSBarry Smith 1842d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1843d382aafbSBarry Smith address). 1844d382aafbSBarry Smith 1845d382aafbSBarry Smith M*/ 1846d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1847d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1848d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1849d382aafbSBarry Smith } while (0) 1850d382aafbSBarry Smith 1851d382aafbSBarry Smith /* 1852d382aafbSBarry Smith Determine if some of the kernel computation routines use 1853d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1854d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1855d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1856e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1857d382aafbSBarry Smith */ 1858d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1859d382aafbSBarry Smith 1860d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1861d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1862d382aafbSBarry Smith #endif 1863d382aafbSBarry Smith 18645a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 18655a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1866d382aafbSBarry Smith #endif 1867d382aafbSBarry Smith 1868d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1869d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1870d382aafbSBarry Smith #endif 1871d382aafbSBarry Smith 1872d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1873d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1874d382aafbSBarry Smith #endif 1875d382aafbSBarry Smith 1876d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1877d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1878d382aafbSBarry Smith #endif 1879d382aafbSBarry Smith 1880d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1881d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1882d382aafbSBarry Smith #endif 1883d382aafbSBarry Smith 1884d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1885d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1886d382aafbSBarry Smith #endif 1887d382aafbSBarry Smith 1888d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1889d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1890d382aafbSBarry Smith #endif 1891d382aafbSBarry Smith 1892d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1893d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1894d382aafbSBarry Smith #endif 1895d382aafbSBarry Smith 1896d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1897d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1898d382aafbSBarry Smith #endif 1899d382aafbSBarry Smith 1900d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1901d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1902d382aafbSBarry Smith #endif 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1905d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1906d382aafbSBarry Smith #endif 1907d382aafbSBarry Smith 1908d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1909d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1910d382aafbSBarry Smith #endif 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1913d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1914d382aafbSBarry Smith #endif 1915d382aafbSBarry Smith 1916d382aafbSBarry Smith #endif 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith /* 1919d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1920d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1921d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1922d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1923d382aafbSBarry Smith ugly extern "C" {} wrappers. 1924d382aafbSBarry Smith */ 1925d382aafbSBarry Smith #if defined(__cplusplus) 1926d382aafbSBarry Smith # define EXTERN_C_BEGIN extern "C" { 1927d382aafbSBarry Smith # define EXTERN_C_END } 1928d382aafbSBarry Smith #else 1929d382aafbSBarry Smith # define EXTERN_C_BEGIN 1930d382aafbSBarry Smith # define EXTERN_C_END 1931d382aafbSBarry Smith #endif 1932d382aafbSBarry Smith 1933d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1934d382aafbSBarry Smith 1935d382aafbSBarry Smith /*MC 1936d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1937d382aafbSBarry Smith communication 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith Level: beginner 1940d382aafbSBarry Smith 1941d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1944d382aafbSBarry Smith M*/ 1945d382aafbSBarry Smith 1946d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1947014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1948014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1949c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_write_at(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1950c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_read_at(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1951c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_write_at_all(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1952c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_read_at_all(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1953d382aafbSBarry Smith #endif 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 1956d382aafbSBarry Smith 1957d382aafbSBarry Smith /* Limit MPI to 32-bits */ 1958d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 1959d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 1960d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 1961d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 1962d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 1963d382aafbSBarry Smith 196461b0d812SBarry Smith /*@C 1965c73702f5SBarry Smith PetscIntCast - casts a PetscInt64 (which is 64 bits in size) to a PetscInt (which may be 32 bits in size), generates an 1966c73702f5SBarry Smith error if the PetscInt is not large enough to hold the number. 1967c73702f5SBarry Smith 1968c73702f5SBarry Smith Not Collective 1969c73702f5SBarry Smith 1970c73702f5SBarry Smith Input Parameter: 1971c73702f5SBarry Smith . a - the PetscInt64 value 1972c73702f5SBarry Smith 1973c73702f5SBarry Smith Output Parameter: 1974c73702f5SBarry Smith . b - the resulting PetscInt value 1975c73702f5SBarry Smith 1976c73702f5SBarry Smith Level: advanced 1977c73702f5SBarry Smith 1978c73702f5SBarry Smith Notes: If integers needed for the applications are too large to fit in 32 bit ints you can ./configure using --with-64-bit-indices to make PetscInt use 64 bit ints 1979c73702f5SBarry Smith 1980c73702f5SBarry Smith Not available from Fortran 1981c73702f5SBarry Smith 1982c73702f5SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast(), PetscBLASIntCast() 1983c73702f5SBarry Smith @*/ 1984c73702f5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntCast(PetscInt64 a,PetscInt *b) 1985c73702f5SBarry Smith { 1986c73702f5SBarry Smith PetscFunctionBegin; 1987c73702f5SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 1988c73702f5SBarry Smith if ((a) > PETSC_MAX_INT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Integer too long for PetscInt, you may need to ./configure using --with-64-bit-indices"); 1989c73702f5SBarry Smith #endif 1990c73702f5SBarry Smith *b = (PetscInt)(a); 1991c73702f5SBarry Smith PetscFunctionReturn(0); 1992c73702f5SBarry Smith } 1993c73702f5SBarry Smith 1994c73702f5SBarry Smith /*@C 199561b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 199661b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 199761b0d812SBarry Smith 199861b0d812SBarry Smith Not Collective 199961b0d812SBarry Smith 200061b0d812SBarry Smith Input Parameter: 200161b0d812SBarry Smith . a - the PetscInt value 200261b0d812SBarry Smith 200361b0d812SBarry Smith Output Parameter: 200461b0d812SBarry Smith . b - the resulting PetscBLASInt value 200561b0d812SBarry Smith 200661b0d812SBarry Smith Level: advanced 200761b0d812SBarry Smith 20081fd49c25SBarry Smith Not available from Fortran 20091fd49c25SBarry Smith 2010c73702f5SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast(), PetscIntCast() 201161b0d812SBarry Smith @*/ 2012c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2013c5df96a5SBarry Smith { 2014c5df96a5SBarry Smith PetscFunctionBegin; 2015c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 201673f49a0bSSatish Balay *b = 0; 2017c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2018c5df96a5SBarry Smith #endif 2019c73702f5SBarry Smith *b = (PetscBLASInt)(a); 2020c5df96a5SBarry Smith PetscFunctionReturn(0); 2021c5df96a5SBarry Smith } 2022c5df96a5SBarry Smith 202361b0d812SBarry Smith /*@C 202461b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 202561b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 202661b0d812SBarry Smith 202761b0d812SBarry Smith Not Collective 202861b0d812SBarry Smith 202961b0d812SBarry Smith Input Parameter: 203061b0d812SBarry Smith . a - the PetscInt value 203161b0d812SBarry Smith 203261b0d812SBarry Smith Output Parameter: 203361b0d812SBarry Smith . b - the resulting PetscMPIInt value 203461b0d812SBarry Smith 203561b0d812SBarry Smith Level: advanced 203661b0d812SBarry Smith 20371fd49c25SBarry Smith Not available from Fortran 20381fd49c25SBarry Smith 2039c73702f5SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntCast() 204061b0d812SBarry Smith @*/ 20414dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 20424dc2109aSBarry Smith { 20434dc2109aSBarry Smith PetscFunctionBegin; 20444dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 204573f49a0bSSatish Balay *b = 0; 20464dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 20474dc2109aSBarry Smith #endif 2048c73702f5SBarry Smith *b = (PetscMPIInt)(a); 20494dc2109aSBarry Smith PetscFunctionReturn(0); 20504dc2109aSBarry Smith } 20514dc2109aSBarry Smith 2052bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 20532f18eb33SBarry Smith 20542f18eb33SBarry Smith /*@C 20552f18eb33SBarry Smith 20562f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 20572f18eb33SBarry Smith 20582f18eb33SBarry Smith Not Collective 20592f18eb33SBarry Smith 20602f18eb33SBarry Smith Input Parameter: 20612f18eb33SBarry Smith + a - the PetscReal value 20622f18eb33SBarry Smith - b - the second value 20632f18eb33SBarry Smith 2064390e1bf2SBarry Smith Returns: 2065390e1bf2SBarry Smith the result as a PetscInt value 20662f18eb33SBarry Smith 2067bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 20682f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 20692f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 20702f18eb33SBarry Smith 2071e28ce29aSPatrick Sanan Developers Note: 2072e28ce29aSPatrick Sanan We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 20732f18eb33SBarry Smith 20742f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 20752f18eb33SBarry Smith 20761fd49c25SBarry Smith Not available from Fortran 20771fd49c25SBarry Smith 20782f18eb33SBarry Smith Level: advanced 20792f18eb33SBarry Smith 2080390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 20812f18eb33SBarry Smith @*/ 20822f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 20832f18eb33SBarry Smith { 2084bafee8b4SSatish Balay PetscInt64 r; 20852f18eb33SBarry Smith 2086bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 20872f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 20882f18eb33SBarry Smith return (PetscInt) r; 20892f18eb33SBarry Smith } 20902f18eb33SBarry Smith 20912f18eb33SBarry Smith /*@C 20922f18eb33SBarry Smith 20932f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 20942f18eb33SBarry Smith 20952f18eb33SBarry Smith Not Collective 20962f18eb33SBarry Smith 20972f18eb33SBarry Smith Input Parameter: 20982f18eb33SBarry Smith + a - the PetscInt value 20992f18eb33SBarry Smith - b - the second value 21002f18eb33SBarry Smith 2101390e1bf2SBarry Smith Returns: 2102390e1bf2SBarry Smith the result as a PetscInt value 21032f18eb33SBarry Smith 2104bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 21052f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 21062f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 21072f18eb33SBarry Smith 21081fd49c25SBarry Smith Not available from Fortran 21091fd49c25SBarry Smith 21102f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 21112f18eb33SBarry Smith 21122f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 21132f18eb33SBarry Smith 21142f18eb33SBarry Smith Level: advanced 21152f18eb33SBarry Smith 2116390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 21172f18eb33SBarry Smith @*/ 21182f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 21192f18eb33SBarry Smith { 2120bafee8b4SSatish Balay PetscInt64 r; 21212f18eb33SBarry Smith 2122bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 21232f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 21242f18eb33SBarry Smith return (PetscInt) r; 21252f18eb33SBarry Smith } 21262f18eb33SBarry Smith 2127f91af8c7SBarry Smith /*@C 2128f91af8c7SBarry Smith 2129f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2130f91af8c7SBarry Smith 2131f91af8c7SBarry Smith Not Collective 2132f91af8c7SBarry Smith 2133f91af8c7SBarry Smith Input Parameter: 2134f91af8c7SBarry Smith + a - the PetscInt value 2135f91af8c7SBarry Smith - b - the second value 2136f91af8c7SBarry Smith 2137390e1bf2SBarry Smith Returns: 2138390e1bf2SBarry Smith the result as a PetscInt value 2139f91af8c7SBarry Smith 2140bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2141f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2142f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2143f91af8c7SBarry Smith 2144f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2145f91af8c7SBarry Smith 2146f5f57ec0SBarry Smith Not available from Fortran 2147f5f57ec0SBarry Smith 2148f91af8c7SBarry Smith Level: advanced 2149f91af8c7SBarry Smith 2150390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2151f91af8c7SBarry Smith @*/ 2152f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2153f91af8c7SBarry Smith { 2154bafee8b4SSatish Balay PetscInt64 r; 2155f91af8c7SBarry Smith 2156bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2157f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2158f91af8c7SBarry Smith return (PetscInt) r; 2159f91af8c7SBarry Smith } 2160f91af8c7SBarry Smith 21612f18eb33SBarry Smith /*@C 21622f18eb33SBarry Smith 21632f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 21642f18eb33SBarry Smith 21652f18eb33SBarry Smith Not Collective 21662f18eb33SBarry Smith 21672f18eb33SBarry Smith Input Parameter: 21682f18eb33SBarry Smith + a - the PetscInt value 21692f18eb33SBarry Smith - b - the second value 21702f18eb33SBarry Smith 21712f18eb33SBarry Smith Output Parameter:ma 2172390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 21732f18eb33SBarry Smith 2174bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 21752f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 21762f18eb33SBarry Smith 2177f5f57ec0SBarry Smith Not available from Fortran 2178f5f57ec0SBarry Smith 2179220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 21802f18eb33SBarry Smith 21812f18eb33SBarry Smith Level: advanced 21822f18eb33SBarry Smith 2183220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 21842f18eb33SBarry Smith @*/ 21852f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 21862f18eb33SBarry Smith { 2187bafee8b4SSatish Balay PetscInt64 r; 21882f18eb33SBarry Smith 21892f18eb33SBarry Smith PetscFunctionBegin; 2190bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 21912f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 21922f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 21932f18eb33SBarry Smith #endif 2194f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2195f91af8c7SBarry Smith PetscFunctionReturn(0); 2196f91af8c7SBarry Smith } 2197f91af8c7SBarry Smith 2198f91af8c7SBarry Smith /*@C 2199f91af8c7SBarry Smith 2200fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2201f91af8c7SBarry Smith 2202f91af8c7SBarry Smith Not Collective 2203f91af8c7SBarry Smith 2204f91af8c7SBarry Smith Input Parameter: 2205f91af8c7SBarry Smith + a - the PetscInt value 2206f91af8c7SBarry Smith - b - the second value 2207f91af8c7SBarry Smith 2208f91af8c7SBarry Smith Output Parameter:ma 2209390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2210f91af8c7SBarry Smith 2211bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2212f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2213f91af8c7SBarry Smith 2214f5f57ec0SBarry Smith Not available from Fortran 2215f5f57ec0SBarry Smith 2216f91af8c7SBarry Smith Level: advanced 2217f91af8c7SBarry Smith 2218390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2219f91af8c7SBarry Smith @*/ 2220f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2221f91af8c7SBarry Smith { 2222bafee8b4SSatish Balay PetscInt64 r; 2223f91af8c7SBarry Smith 2224f91af8c7SBarry Smith PetscFunctionBegin; 2225bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2226f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2227f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2228f91af8c7SBarry Smith #endif 2229f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 22302f18eb33SBarry Smith PetscFunctionReturn(0); 22312f18eb33SBarry Smith } 2232c5df96a5SBarry Smith 2233d382aafbSBarry Smith /* 22342981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2235d382aafbSBarry Smith */ 2236d382aafbSBarry Smith #if defined(hz) 2237d382aafbSBarry Smith # undef hz 2238d382aafbSBarry Smith #endif 2239d382aafbSBarry Smith 224015a5570dSLisandro Dalcin #include <limits.h> 224115a5570dSLisandro Dalcin 224215a5570dSLisandro Dalcin /* The number of bits in a byte */ 224315a5570dSLisandro Dalcin 224415a5570dSLisandro Dalcin #define PETSC_BITS_PER_BYTE CHAR_BIT 224515a5570dSLisandro Dalcin 2246d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2247d382aafbSBarry Smith 2248d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2249d382aafbSBarry Smith # include <sys/param.h> 2250d382aafbSBarry Smith #endif 2251d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2252d382aafbSBarry Smith # include <sys/types.h> 2253d382aafbSBarry Smith #endif 2254d382aafbSBarry Smith #if defined(MAXPATHLEN) 2255d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2256d382aafbSBarry Smith #elif defined(MAX_PATH) 2257d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2258d382aafbSBarry Smith #elif defined(_MAX_PATH) 2259d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2260d382aafbSBarry Smith #else 2261d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2262d382aafbSBarry Smith #endif 2263d382aafbSBarry Smith 2264d382aafbSBarry Smith /*MC 2265d382aafbSBarry Smith 226666d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 226766d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 226866d79e26SBarry Smith 226966d79e26SBarry Smith 227066d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 227166d79e26SBarry Smith 227266d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 227366d79e26SBarry Smith 227466d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 227566d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 227666d79e26SBarry Smith 227766d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 227866d79e26SBarry Smith 227966d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 228066d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 228166d79e26SBarry Smith version number (x.y.z). 228266d79e26SBarry Smith 228366d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 228466d79e26SBarry Smith 228566d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 228666d79e26SBarry Smith 228766d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 228866d79e26SBarry Smith 228966d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 229066d79e26SBarry Smith 229166d79e26SBarry Smith Level: intermediate 229266d79e26SBarry Smith 229366d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 229466d79e26SBarry Smith 229566d79e26SBarry Smith M*/ 229666d79e26SBarry Smith 229766d79e26SBarry Smith /*MC 229866d79e26SBarry Smith 22991b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 23001b266c99SBarry Smith of every function and module definition you need something like 2301d382aafbSBarry Smith 2302d382aafbSBarry Smith $ 2303af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 23040f665fc7SPatrick Sanan $ use petscXXX 23051b266c99SBarry Smith 2306692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 23071b266c99SBarry Smith 2308d382aafbSBarry Smith $ XXX variablename 23091b266c99SBarry Smith $ type(tXXX) variablename 23101b266c99SBarry Smith 2311692afcd8SPatrick Sanan For example, 23121b266c99SBarry Smith 2313bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 23141b266c99SBarry Smith $ use petscvec 2315d382aafbSBarry Smith $ 2316692afcd8SPatrick Sanan $ Vec b 2317692afcd8SPatrick Sanan $ type(tVec) x 2318d382aafbSBarry Smith 2319d382aafbSBarry Smith Level: beginner 2320d382aafbSBarry Smith 2321d382aafbSBarry Smith M*/ 2322d382aafbSBarry Smith 2323014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2325014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 232927710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 23305f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2331d382aafbSBarry Smith 23326a7c706bSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSortedInt(PetscInt,const PetscInt[],PetscBool*); 23336a7c706bSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSortedMPIInt(PetscInt,const PetscMPIInt[],PetscBool*); 23346a7c706bSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSortedReal(PetscInt,const PetscReal[],PetscBool*); 2335014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2336ce605777SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortReverseInt(PetscInt,PetscInt[]); 233722ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 2339f1cab4e1SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscCheckDupsInt(PetscInt,const PetscInt[],PetscBool*); 234060e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2341d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2342014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 23456c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 234617d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 234717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 23495569a785SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithIntArray(PetscMPIInt,PetscMPIInt[],PetscInt[]); 2350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 235117df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 235339f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2355745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 235639f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2358014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 23606c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 23616c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2362e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2363d382aafbSBarry Smith 2364ce605777SToby Isaac PETSC_EXTERN PetscErrorCode PetscParallelSortedInt(MPI_Comm, PetscInt, const PetscInt[], PetscBool *); 2365ce605777SToby Isaac 2366014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2368d382aafbSBarry Smith 236976bdecfbSBarry Smith /*J 2370d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2371d382aafbSBarry Smith 2372d382aafbSBarry Smith Level: beginner 2373d382aafbSBarry Smith 2374e28ce29aSPatrick Sanan Notes: 2375e28ce29aSPatrick Sanan To use SPRNG or RANDOM123 you must have ./configure PETSc 237625ccb61fSToby Isaac with the option --download-sprng or --download-random123 2377d382aafbSBarry Smith 23788f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 237976bdecfbSBarry Smith J*/ 238019fd82e9SBarry Smith typedef const char* PetscRandomType; 2381d382aafbSBarry Smith #define PETSCRAND "rand" 2382d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2383d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2384c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 238525ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2386d382aafbSBarry Smith 2387d382aafbSBarry Smith /* Logging support */ 2388014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2389d382aafbSBarry Smith 2390607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2391d382aafbSBarry Smith 2392d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2393140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2394d382aafbSBarry Smith 2395bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 239619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 239819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2399fe2efc57SMark PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,PetscObject,const char[]); 2400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2401d382aafbSBarry Smith 2402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2411d382aafbSBarry Smith 2412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 241997540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 24208a10d460SHong Zhang PETSC_EXTERN PetscErrorCode PetscMkdtemp(char[]); 242197540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2422d382aafbSBarry Smith 242330815ce0SLisandro Dalcin PETSC_STATIC_INLINE PetscBool PetscBinaryBigEndian(void) {long _petsc_v = 1; return ((char*)&_petsc_v)[0] ? PETSC_FALSE : PETSC_TRUE;} 242430815ce0SLisandro Dalcin 24259860990eSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscInt*,PetscDataType); 24269860990eSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscInt*,PetscDataType); 2427f253e43cSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,const void*,PetscInt,PetscDataType); 2428f253e43cSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,const void*,PetscInt,PetscDataType); 2429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2436c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2437e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2438c891a504SStefano Zampini #endif 2439d382aafbSBarry Smith 2440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2443d382aafbSBarry Smith 2444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2450d382aafbSBarry Smith 2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2456cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2457cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2458d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2459d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2460d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2461d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 24626afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 24636afbe7ddSJed Brown MPI_Request**,MPI_Request**, 24646afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 24656afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 24666afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2467d382aafbSBarry Smith 24686145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 24696145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 24706145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 24716145cd65SJed Brown 2472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool*,PetscBool*); 2473d382aafbSBarry Smith 2474ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2475ce94432eSBarry Smith 247645487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 247745487dadSJed Brown 2478d382aafbSBarry Smith struct _n_PetscSubcomm { 2479d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2480d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2481306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 248245487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 248345487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2484708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 248545487dadSJed Brown PetscSubcommType type; 2486e5acf8a4SHong Zhang char *subcommprefix; 2487d382aafbSBarry Smith }; 2488d382aafbSBarry Smith 2489c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2490306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 249136be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 249665d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2497053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2498f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2499e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2500a530d236SBarry Smith PETSC_EXTERN PetscErrorCode PetscSubcommGetParent(PetscSubcomm,MPI_Comm*); 2501a530d236SBarry Smith PETSC_EXTERN PetscErrorCode PetscSubcommGetContiguousParent(PetscSubcomm,MPI_Comm*); 2502a530d236SBarry Smith PETSC_EXTERN PetscErrorCode PetscSubcommGetChild(PetscSubcomm,MPI_Comm*); 2503d382aafbSBarry Smith 25049962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 25059962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 25069962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 25079962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 25089962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 25099962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 25109962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 25119962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 25129962606eSBarry Smith 25135e71baefSBarry Smith PETSC_EXTERN PetscErrorCode PetscProcessPlacementView(PetscViewer); 25145f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommGet(MPI_Comm,PetscShmComm*); 25155f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommGlobalToLocal(PetscShmComm,PetscMPIInt,PetscMPIInt*); 25165f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommLocalToGlobal(PetscShmComm,PetscMPIInt,PetscMPIInt*); 25175f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommGetMpiShmComm(PetscShmComm,MPI_Comm*); 25185e71baefSBarry Smith 2519a32e93adSJunchao Zhang /* routines to better support OpenMP multithreading needs of some PETSc third party libraries */ 2520a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlCreate(MPI_Comm,PetscInt,PetscOmpCtrl*); 2521a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlGetOmpComms(PetscOmpCtrl,MPI_Comm*,MPI_Comm*,PetscBool*); 2522a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlDestroy(PetscOmpCtrl*); 2523a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlBarrier(PetscOmpCtrl); 2524a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlOmpRegionOnMasterBegin(PetscOmpCtrl); 2525a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlOmpRegionOnMasterEnd(PetscOmpCtrl); 2526a32e93adSJunchao Zhang 252713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 25280f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 252913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2530137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2531137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2532137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 253313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 253413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 25350f453b92SJed Brown 25365e71baefSBarry Smith 2537471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2538471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2539471ecdacSJed Brown * possible. */ 25406a11cab8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,size_t count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2541d382aafbSBarry Smith 25429de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 25439de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 25449de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 25459de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 25469de0f6ecSBarry Smith 2547ace2fbaeSBarry Smith #include <stdarg.h> 2548ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 2549ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 2550ace2fbaeSBarry Smith 2551268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2552fbfcfee5SBarry Smith 25531f817a21SBarry Smith /*@C 25541f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 25551f817a21SBarry Smith 25561f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 25571f817a21SBarry Smith 25581f817a21SBarry Smith Input Parameters: 25591f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 25601f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 25611f817a21SBarry Smith 2562850545d0SSatish Balay Level: intermediate 2563850545d0SSatish Balay 2564f5f57ec0SBarry Smith Not available from Fortran 2565f5f57ec0SBarry Smith 25661f817a21SBarry Smith Options Database: 2567063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 25681f817a21SBarry Smith @*/ 2569dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2570dff31646SBarry Smith { 2571dff31646SBarry Smith size_t len; 2572dff31646SBarry Smith char *vstring; 2573dff31646SBarry Smith PetscErrorCode ierr; 2574dff31646SBarry Smith 25751f817a21SBarry Smith PetscFunctionBegin; 25768d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2577dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 257835005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2579580bdb30SBarry Smith ierr = PetscArraycpy(vstring,cit,len);CHKERRQ(ierr); 2580dff31646SBarry Smith if (set) *set = PETSC_TRUE; 25811f817a21SBarry Smith PetscFunctionReturn(0); 2582dff31646SBarry Smith } 2583dff31646SBarry Smith 2584b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2585fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2586fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2587f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2588fe278a28SBarry Smith 2589f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2590f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2591b967cddfSBarry Smith 25929f4d3c52SBarry Smith PETSC_EXTERN PetscErrorCode PetscGlobusGetTransfers(MPI_Comm,const char[],char[],size_t); 25939f4d3c52SBarry Smith 259404102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2595763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2596dff31646SBarry Smith 259768e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 25985dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2599d382aafbSBarry Smith 2600b2566f29SBarry Smith 2601b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2602b2566f29SBarry Smith /* 2603b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2604b2566f29SBarry Smith */ 26058f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 260677a5e07dSBarry Smith 260777a5e07dSBarry Smith /*MC 260877a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 260977a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 261077a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 261177a5e07dSBarry Smith 2612d083f849SBarry Smith Collective 261377a5e07dSBarry Smith 261477a5e07dSBarry Smith Synopsis: 261577a5e07dSBarry Smith #include <petscsys.h> 261677a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 261777a5e07dSBarry Smith 261877a5e07dSBarry Smith Input Parameters: 261977a5e07dSBarry Smith + indata - pointer to the input data to be reduced 262077a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 262177a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 262277a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 262377a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 262477a5e07dSBarry Smith 262577a5e07dSBarry Smith Output Parameter: 262677a5e07dSBarry Smith . outdata - the reduced values 262777a5e07dSBarry Smith 2628e28ce29aSPatrick Sanan Notes: 2629e28ce29aSPatrick Sanan In optimized mode this directly calls MPI_Allreduce() 263077a5e07dSBarry Smith 263177a5e07dSBarry Smith Level: developer 263277a5e07dSBarry Smith 263377a5e07dSBarry Smith .seealso: MPI_Allreduce() 263477a5e07dSBarry Smith M*/ 2635fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2636b2566f29SBarry Smith #else 2637b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2638b2566f29SBarry Smith #endif 2639b2566f29SBarry Smith 2640b674149eSJunchao Zhang #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) 26418198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_allocate_shared(MPI_Aint,PetscMPIInt,MPI_Info,MPI_Comm,void*,MPI_Win*); 26428198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_shared_query(MPI_Win,PetscMPIInt,MPI_Aint*,PetscMPIInt*,void*); 26432f065d89SBarry Smith #endif 26448198064fSBarry Smith 264512801b39SBarry Smith /* 264612801b39SBarry Smith Returned from PETSc functions that are called from MPI, such as related to attributes 264712801b39SBarry Smith */ 26488ba48ad5SSatish Balay PETSC_EXTERN PetscMPIInt PETSC_MPI_ERROR_CLASS; 26498ba48ad5SSatish Balay PETSC_EXTERN PetscMPIInt PETSC_MPI_ERROR_CODE; 265012801b39SBarry Smith 2651d382aafbSBarry Smith #endif 2652