1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 14241f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14341f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14441f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 14541f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 14641f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 14741f4af4cSSatish Balay # endif 14841f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 14941f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 15041f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 15141f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 15241f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15341f4af4cSSatish Balay # endif 154a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 15541f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 156a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 157ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 158a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 159a7886beaSBarry Smith # endif 160a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 161a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 162a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 163ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 164c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 165a7886beaSBarry Smith # endif 16641f4af4cSSatish Balay #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 16741f4af4cSSatish Balay # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 168a7886beaSBarry Smith #endif 169a7886beaSBarry Smith 170a7886beaSBarry Smith /* 1712981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 172d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 173d382aafbSBarry Smith */ 174d382aafbSBarry Smith #include <stdio.h> 175d382aafbSBarry Smith 176d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 177d382aafbSBarry Smith #if !defined(MPIAPI) 178d382aafbSBarry Smith #define MPIAPI 179d382aafbSBarry Smith #endif 180d382aafbSBarry Smith 1811cc8b206SBarry Smith /* 1821cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1831cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1841cc8b206SBarry Smith does not match the actual type of the argument being passed in 1851cc8b206SBarry Smith */ 186c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 187894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 188894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1898ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1908ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 191894dd566SJed Brown # endif 192894dd566SJed Brown #endif 193894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 194894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1958ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1968ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 197894dd566SJed Brown #endif 198b3506946SBarry Smith 199d382aafbSBarry Smith /*MC 2001957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 201d382aafbSBarry Smith 202d382aafbSBarry Smith Level: beginner 203d382aafbSBarry Smith 204d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 205d382aafbSBarry Smith M*/ 206d382aafbSBarry Smith typedef int PetscErrorCode; 207d382aafbSBarry Smith 208d382aafbSBarry Smith /*MC 209d382aafbSBarry Smith 210503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 211d382aafbSBarry Smith 2121957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 2131957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2141957e957SBarry Smith 2151957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2161957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2171957e957SBarry Smith 2181957e957SBarry Smith Level: developer 219d382aafbSBarry Smith 2200700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 221d382aafbSBarry Smith M*/ 2220700a824SBarry Smith typedef int PetscClassId; 223d382aafbSBarry Smith 224d382aafbSBarry Smith 225d382aafbSBarry Smith /*MC 226d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 227d382aafbSBarry Smith 228d382aafbSBarry Smith Level: intermediate 229d382aafbSBarry Smith 230d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2313b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 232d382aafbSBarry Smith 2334dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2342981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 235d382aafbSBarry Smith 2361cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 237d382aafbSBarry Smith 238d382aafbSBarry Smith M*/ 239d382aafbSBarry Smith typedef int PetscMPIInt; 240d382aafbSBarry Smith 241d382aafbSBarry Smith /*MC 242d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 243d382aafbSBarry Smith 244d382aafbSBarry Smith Level: intermediate 245d382aafbSBarry Smith 246d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 247d382aafbSBarry Smith M*/ 248d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2495a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 250d382aafbSBarry Smith 251fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 252fab38c73SJed Brown #include <stdint.h> 253fab38c73SJed Brown #endif 254a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 25513e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 256a05e1a72SSatish Balay #include <inttypes.h> 25737354ed4SSatish Balay # if !defined(PRId64) 25837354ed4SSatish Balay # define PRId64 "ld" 25937354ed4SSatish Balay # endif 260a05e1a72SSatish Balay #endif 261fab38c73SJed Brown 26299a4b90dSDave May typedef short PetscShort; 26399a4b90dSDave May typedef char PetscChar; 26499a4b90dSDave May typedef float PetscFloat; 26599a4b90dSDave May 266d382aafbSBarry Smith /*MC 267d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2683b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 269d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 270d382aafbSBarry Smith 271390e1bf2SBarry Smith 272390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of 273390e1bf2SBarry Smith the size of PetscInt 274390e1bf2SBarry Smith 275d382aafbSBarry Smith Level: intermediate 276d382aafbSBarry Smith 277d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 278d382aafbSBarry Smith M*/ 27937354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 280bafee8b4SSatish Balay typedef int64_t PetscInt64; 281bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 282a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 283fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 284bafee8b4SSatish Balay typedef long long PetscInt64; 285bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 286a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 287f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 288bafee8b4SSatish Balay typedef __int64 PetscInt64; 289bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 290a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 291236ed0a3SSatish Balay #else 292bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 293236ed0a3SSatish Balay #endif 294b7b8f77aSBarry Smith 295b7b8f77aSBarry Smith #if PETSC_SIZEOF_VOID_P == 4 296b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPI_INT 297b7b8f77aSBarry Smith #else 298b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPIU_INT64 299b7b8f77aSBarry Smith #endif 300b7b8f77aSBarry Smith 301d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 302bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 303bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 304a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 305d382aafbSBarry Smith #else 306d382aafbSBarry Smith typedef int PetscInt; 307d382aafbSBarry Smith #define MPIU_INT MPI_INT 308a05e1a72SSatish Balay #define PetscInt_FMT "d" 309d382aafbSBarry Smith #endif 310d382aafbSBarry Smith 311702bc34aSSatish Balay /*MC 312702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 313702bc34aSSatish Balay 314702bc34aSSatish Balay Level: intermediate 315702bc34aSSatish Balay 316702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 317702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 318702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 319702bc34aSSatish Balay 320c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3212981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 322702bc34aSSatish Balay 3232981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 324702bc34aSSatish Balay if you run ./configure with the option 325149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3262981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3272981ebdbSBarry Smith 328390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 329390e1bf2SBarry Smith --known-64-bit-blas-indices 330390e1bf2SBarry Smith 331390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 332390e1bf2SBarry Smith will build a 64 bit integer version 3332981ebdbSBarry Smith 3342981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 335702bc34aSSatish Balay 336702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 337702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 338702bc34aSSatish Balay 3391cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 340702bc34aSSatish Balay 341702bc34aSSatish Balay M*/ 342702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 343bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 344702bc34aSSatish Balay #else 345702bc34aSSatish Balay typedef int PetscBLASInt; 346702bc34aSSatish Balay #endif 347702bc34aSSatish Balay 348503cfb0cSBarry Smith /* 349503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 350503cfb0cSBarry Smith */ 351d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 352adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 353d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 354adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 355d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 356adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 357d382aafbSBarry Smith #else 358d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 359d382aafbSBarry Smith #endif 360d382aafbSBarry Smith 361d382aafbSBarry Smith /* 362d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 363d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 364d382aafbSBarry Smith */ 365014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 366d382aafbSBarry Smith 367d382aafbSBarry Smith /* 368d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 369d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 370d382aafbSBarry Smith */ 371014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 372d382aafbSBarry Smith 373d382aafbSBarry Smith /*MC 374d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 375d382aafbSBarry Smith 376d382aafbSBarry Smith Synopsis: 377aaa7dc30SBarry Smith #include <petscsys.h> 378ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 379d382aafbSBarry Smith 380eca87e8dSBarry Smith Not Collective 381eca87e8dSBarry Smith 382d382aafbSBarry Smith Input Parameters: 383d382aafbSBarry Smith . cond - condition or expression 384d382aafbSBarry Smith 385d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 386d382aafbSBarry Smith branch is unlikely. 387d382aafbSBarry Smith 388d382aafbSBarry Smith Level: advanced 389d382aafbSBarry Smith 390d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 391d382aafbSBarry Smith M*/ 392d382aafbSBarry Smith 393d382aafbSBarry Smith /*MC 394d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 395d382aafbSBarry Smith 396d382aafbSBarry Smith Synopsis: 397aaa7dc30SBarry Smith #include <petscsys.h> 39823072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 399d382aafbSBarry Smith 400eca87e8dSBarry Smith Not Collective 401eca87e8dSBarry Smith 402d382aafbSBarry Smith Input Parameters: 403d382aafbSBarry Smith . cond - condition or expression 404d382aafbSBarry Smith 405d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 406d382aafbSBarry Smith branch is likely. 407d382aafbSBarry Smith 408d382aafbSBarry Smith Level: advanced 409d382aafbSBarry Smith 410d382aafbSBarry Smith .seealso: PetscUnlikely() 411d382aafbSBarry Smith M*/ 412d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 413d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 414d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 415d382aafbSBarry Smith #else 416cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 417cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 418d382aafbSBarry Smith #endif 419d382aafbSBarry Smith 420d382aafbSBarry Smith /* 421d382aafbSBarry Smith Declare extern C stuff after including external header files 422d382aafbSBarry Smith */ 423d382aafbSBarry Smith 424d382aafbSBarry Smith 425d382aafbSBarry Smith /* 426d382aafbSBarry Smith Basic PETSc constants 427d382aafbSBarry Smith */ 428d382aafbSBarry Smith 429d382aafbSBarry Smith /*E 430ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 431d382aafbSBarry Smith 432d382aafbSBarry Smith Level: beginner 433d382aafbSBarry Smith 434ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 43534e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 43634e82e7dSBarry Smith 4371cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 438d382aafbSBarry Smith E*/ 439ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4406a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4415a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 44270b3c8c7SBarry Smith 4438b49ba18SBarry Smith /* 444390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4458b49ba18SBarry Smith */ 4468b49ba18SBarry Smith #include <petscmath.h> 4478b49ba18SBarry Smith 44870b3c8c7SBarry Smith /*E 44970b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 45070b3c8c7SBarry Smith 45170b3c8c7SBarry Smith Level: beginner 45270b3c8c7SBarry Smith 45370b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 45470b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 45570b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 45670b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 45770b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 45870b3c8c7SBarry Smith 45970b3c8c7SBarry Smith E*/ 46070b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4616a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 462d382aafbSBarry Smith 463d382aafbSBarry Smith /*MC 464ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 465d382aafbSBarry Smith 466d382aafbSBarry Smith Level: beginner 467d382aafbSBarry Smith 468d382aafbSBarry Smith Note: Zero integer 469d382aafbSBarry Smith 470ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 471d382aafbSBarry Smith M*/ 472d382aafbSBarry Smith 473d382aafbSBarry Smith /*MC 474ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 475d382aafbSBarry Smith 476d382aafbSBarry Smith Level: beginner 477d382aafbSBarry Smith 478d382aafbSBarry Smith Note: Nonzero integer 479d382aafbSBarry Smith 480ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 481d382aafbSBarry Smith M*/ 482d382aafbSBarry Smith 483d382aafbSBarry Smith /*MC 4840298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 485d382aafbSBarry Smith 486d382aafbSBarry Smith Level: beginner 487d382aafbSBarry Smith 488d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 489d382aafbSBarry Smith some default 490d382aafbSBarry Smith 491d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 492d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 493d382aafbSBarry Smith 494d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 495d382aafbSBarry Smith 496d382aafbSBarry Smith M*/ 4970298fd71SBarry Smith #define PETSC_IGNORE NULL 498d382aafbSBarry Smith 499c528d872SBarry Smith /* This is deprecated */ 500c528d872SBarry Smith #define PETSC_NULL NULL 501c528d872SBarry Smith 502d382aafbSBarry Smith /*MC 503557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 504557d4da8SBarry Smith where you wish PETSc to use the default. 505557d4da8SBarry Smith 506557d4da8SBarry Smith Level: beginner 507557d4da8SBarry Smith 508557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 509557d4da8SBarry Smith 510557d4da8SBarry Smith M*/ 511557d4da8SBarry Smith #define PETSC_DECIDE -1 512557d4da8SBarry Smith 513557d4da8SBarry Smith /*MC 514d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 515d382aafbSBarry Smith where you wish PETSc to compute the required value. 516d382aafbSBarry Smith 517d382aafbSBarry Smith Level: beginner 518d382aafbSBarry Smith 519557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 520557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 521557d4da8SBarry Smith 5220298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 523d382aafbSBarry Smith 524d382aafbSBarry Smith M*/ 525d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 526d382aafbSBarry Smith 527d382aafbSBarry Smith /*MC 528557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 529557d4da8SBarry Smith where you wish PETSc to use the default. 530557d4da8SBarry Smith 531557d4da8SBarry Smith Level: beginner 532557d4da8SBarry Smith 5332d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 534557d4da8SBarry Smith 5350298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 536557d4da8SBarry Smith 537557d4da8SBarry Smith M*/ 538557d4da8SBarry Smith #define PETSC_DEFAULT -2 539557d4da8SBarry Smith 540557d4da8SBarry Smith /*MC 541d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 542d382aafbSBarry Smith all the processs that PETSc knows about. 543d382aafbSBarry Smith 544d382aafbSBarry Smith Level: beginner 545d382aafbSBarry Smith 546d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 547d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 548d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 549a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 550a990b902SBarry Smith 551a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 552a990b902SBarry Smith is called because it may not have a valid value yet. 553d382aafbSBarry Smith 554d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 555d382aafbSBarry Smith 556d382aafbSBarry Smith M*/ 557014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 558d382aafbSBarry Smith 559d382aafbSBarry Smith /*MC 560503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 561d382aafbSBarry Smith 562d382aafbSBarry Smith Level: beginner 563d382aafbSBarry Smith 564a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 565a990b902SBarry Smith 566d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 567d382aafbSBarry Smith 568d382aafbSBarry Smith M*/ 569d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 570d382aafbSBarry Smith 571d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 572014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 573014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 574014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5754cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 57682f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 577d382aafbSBarry Smith 578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 581d382aafbSBarry Smith 582d382aafbSBarry Smith /*MC 58395dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 584d382aafbSBarry Smith 585eca87e8dSBarry Smith Synopsis: 586aaa7dc30SBarry Smith #include <petscsys.h> 587eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 588eca87e8dSBarry Smith 589eca87e8dSBarry Smith Not Collective 590eca87e8dSBarry Smith 591d382aafbSBarry Smith Input Parameter: 592d382aafbSBarry Smith . m - number of bytes to allocate 593d382aafbSBarry Smith 594d382aafbSBarry Smith Output Parameter: 595d382aafbSBarry Smith . result - memory allocated 596d382aafbSBarry Smith 597d382aafbSBarry Smith Level: beginner 598d382aafbSBarry Smith 59949d7da52SJed Brown Notes: 60049d7da52SJed Brown Memory is always allocated at least double aligned 601d382aafbSBarry Smith 60249d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 603d382aafbSBarry Smith 604d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 605d382aafbSBarry Smith 606d382aafbSBarry Smith Concepts: memory allocation 607d382aafbSBarry Smith 608d382aafbSBarry Smith M*/ 60949d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 610d382aafbSBarry Smith 611d382aafbSBarry Smith /*MC 6123221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6133221ece2SMatthew G. Knepley 6143221ece2SMatthew G. Knepley Synopsis: 6153221ece2SMatthew G. Knepley #include <petscsys.h> 6163221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6173221ece2SMatthew G. Knepley 6183221ece2SMatthew G. Knepley Not Collective 6193221ece2SMatthew G. Knepley 6203221ece2SMatthew G. Knepley Input Parameters: 6213221ece2SMatthew G. Knepley + m - number of bytes to allocate 6223221ece2SMatthew G. Knepley - result - initial memory allocated 6233221ece2SMatthew G. Knepley 6243221ece2SMatthew G. Knepley Output Parameter: 6253221ece2SMatthew G. Knepley . result - new memory allocated 6263221ece2SMatthew G. Knepley 6273221ece2SMatthew G. Knepley Level: developer 6283221ece2SMatthew G. Knepley 6293221ece2SMatthew G. Knepley Notes: 6303221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6313221ece2SMatthew G. Knepley 6323221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6333221ece2SMatthew G. Knepley 6343221ece2SMatthew G. Knepley Concepts: memory allocation 6353221ece2SMatthew G. Knepley 6363221ece2SMatthew G. Knepley M*/ 6373221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6383221ece2SMatthew G. Knepley 6393221ece2SMatthew G. Knepley /*MC 640503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 641d382aafbSBarry Smith 642d382aafbSBarry Smith Synopsis: 643aaa7dc30SBarry Smith #include <petscsys.h> 644d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 645d382aafbSBarry Smith 646eca87e8dSBarry Smith Not Collective 647eca87e8dSBarry Smith 648eca87e8dSBarry Smith Input Parameters: 649eca87e8dSBarry Smith . addr - address to align (any pointer type) 650eca87e8dSBarry Smith 651d382aafbSBarry Smith Level: developer 652d382aafbSBarry Smith 653d382aafbSBarry Smith .seealso: PetscMallocAlign() 654d382aafbSBarry Smith 655d382aafbSBarry Smith Concepts: memory allocation 656d382aafbSBarry Smith M*/ 657d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 658d382aafbSBarry Smith 659d382aafbSBarry Smith /*MC 660785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 661d382aafbSBarry Smith 662eca87e8dSBarry Smith Synopsis: 663aaa7dc30SBarry Smith #include <petscsys.h> 664785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 665785e854fSJed Brown 666785e854fSJed Brown Not Collective 667785e854fSJed Brown 668785e854fSJed Brown Input Parameter: 669390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 670785e854fSJed Brown 671785e854fSJed Brown Output Parameter: 672785e854fSJed Brown . r1 - memory allocated in first chunk 673785e854fSJed Brown 674390e1bf2SBarry Smith Note: This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 675390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 676390e1bf2SBarry Smith $ PetscInt *id; 677390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 678390e1bf2SBarry Smith not 679390e1bf2SBarry Smith $ PetscInt *id; 680390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 681390e1bf2SBarry Smith 682390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 683390e1bf2SBarry Smith 684390e1bf2SBarry Smith Level: beginner 685785e854fSJed Brown 6861795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 687785e854fSJed Brown 688785e854fSJed Brown Concepts: memory allocation 689785e854fSJed Brown 690785e854fSJed Brown M*/ 6912553b7ecSJed Brown #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 692785e854fSJed Brown 693785e854fSJed Brown /*MC 6941795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6951795a4d1SJed Brown 6961795a4d1SJed Brown Synopsis: 697aaa7dc30SBarry Smith #include <petscsys.h> 6981795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6991795a4d1SJed Brown 7001795a4d1SJed Brown Not Collective 7011795a4d1SJed Brown 7021795a4d1SJed Brown Input Parameter: 7031795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 7041795a4d1SJed Brown 7051795a4d1SJed Brown Output Parameter: 7061795a4d1SJed Brown . r1 - memory allocated in first chunk 7071795a4d1SJed Brown 708390e1bf2SBarry Smith Notes: see PetsMalloc1() for more details on usage. 709390e1bf2SBarry Smith 710390e1bf2SBarry Smith Level: beginner 7111795a4d1SJed Brown 7121795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 7131795a4d1SJed Brown 7141795a4d1SJed Brown Concepts: memory allocation 7151795a4d1SJed Brown 7161795a4d1SJed Brown M*/ 7172553b7ecSJed Brown #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 7181795a4d1SJed Brown 7191795a4d1SJed Brown /*MC 720dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 721d382aafbSBarry Smith 722eca87e8dSBarry Smith Synopsis: 723aaa7dc30SBarry Smith #include <petscsys.h> 724dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 725eca87e8dSBarry Smith 726eca87e8dSBarry Smith Not Collective 727eca87e8dSBarry Smith 728d382aafbSBarry Smith Input Parameter: 729d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 730dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 731d382aafbSBarry Smith 732d382aafbSBarry Smith Output Parameter: 733d382aafbSBarry Smith + r1 - memory allocated in first chunk 734d382aafbSBarry Smith - r2 - memory allocated in second chunk 735d382aafbSBarry Smith 736d382aafbSBarry Smith Level: developer 737d382aafbSBarry Smith 7381795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 739d382aafbSBarry Smith 740d382aafbSBarry Smith Concepts: memory allocation 741d382aafbSBarry Smith 742d382aafbSBarry Smith M*/ 7432553b7ecSJed Brown #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 744d382aafbSBarry Smith 745d382aafbSBarry Smith /*MC 7461795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 747d382aafbSBarry Smith 748eca87e8dSBarry Smith Synopsis: 749aaa7dc30SBarry Smith #include <petscsys.h> 7501795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 751eca87e8dSBarry Smith 752eca87e8dSBarry Smith Not Collective 753eca87e8dSBarry Smith 754d382aafbSBarry Smith Input Parameter: 755d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7561795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7571795a4d1SJed Brown 7581795a4d1SJed Brown Output Parameter: 7591795a4d1SJed Brown + r1 - memory allocated in first chunk 7601795a4d1SJed Brown - r2 - memory allocated in second chunk 7611795a4d1SJed Brown 7621795a4d1SJed Brown Level: developer 7631795a4d1SJed Brown 7641795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7651795a4d1SJed Brown 7661795a4d1SJed Brown Concepts: memory allocation 7671795a4d1SJed Brown M*/ 7682553b7ecSJed Brown #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 7691795a4d1SJed Brown 7701795a4d1SJed Brown /*MC 771dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 772d382aafbSBarry Smith 773d382aafbSBarry Smith Synopsis: 774aaa7dc30SBarry Smith #include <petscsys.h> 775dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 776d382aafbSBarry Smith 777d382aafbSBarry Smith Not Collective 778d382aafbSBarry Smith 779d382aafbSBarry Smith Input Parameter: 780d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 781d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 782dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 783d382aafbSBarry Smith 784d382aafbSBarry Smith Output Parameter: 785d382aafbSBarry Smith + r1 - memory allocated in first chunk 786d382aafbSBarry Smith . r2 - memory allocated in second chunk 787d382aafbSBarry Smith - r3 - memory allocated in third chunk 788d382aafbSBarry Smith 789d382aafbSBarry Smith Level: developer 790d382aafbSBarry Smith 7911795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 792d382aafbSBarry Smith 793d382aafbSBarry Smith Concepts: memory allocation 794d382aafbSBarry Smith 795d382aafbSBarry Smith M*/ 7962553b7ecSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 797d382aafbSBarry Smith 798d382aafbSBarry Smith /*MC 7991795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 800d382aafbSBarry Smith 801eca87e8dSBarry Smith Synopsis: 802aaa7dc30SBarry Smith #include <petscsys.h> 8031795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 804eca87e8dSBarry Smith 805eca87e8dSBarry Smith Not Collective 806eca87e8dSBarry Smith 807d382aafbSBarry Smith Input Parameter: 808d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 809d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8101795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8111795a4d1SJed Brown 8121795a4d1SJed Brown Output Parameter: 8131795a4d1SJed Brown + r1 - memory allocated in first chunk 8141795a4d1SJed Brown . r2 - memory allocated in second chunk 8151795a4d1SJed Brown - r3 - memory allocated in third chunk 8161795a4d1SJed Brown 8171795a4d1SJed Brown Level: developer 8181795a4d1SJed Brown 8191795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8201795a4d1SJed Brown 8211795a4d1SJed Brown Concepts: memory allocation 8221795a4d1SJed Brown M*/ 8232553b7ecSJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 8241795a4d1SJed Brown 8251795a4d1SJed Brown /*MC 826dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 827d382aafbSBarry Smith 828d382aafbSBarry Smith Synopsis: 829aaa7dc30SBarry Smith #include <petscsys.h> 830dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 831d382aafbSBarry Smith 832d382aafbSBarry Smith Not Collective 833d382aafbSBarry Smith 834d382aafbSBarry Smith Input Parameter: 835d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 836d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 837d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 838dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 839d382aafbSBarry Smith 840d382aafbSBarry Smith Output Parameter: 841d382aafbSBarry Smith + r1 - memory allocated in first chunk 842d382aafbSBarry Smith . r2 - memory allocated in second chunk 843d382aafbSBarry Smith . r3 - memory allocated in third chunk 844d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 845d382aafbSBarry Smith 846d382aafbSBarry Smith Level: developer 847d382aafbSBarry Smith 8481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 849d382aafbSBarry Smith 850d382aafbSBarry Smith Concepts: memory allocation 851d382aafbSBarry Smith 852d382aafbSBarry Smith M*/ 8532553b7ecSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 854d382aafbSBarry Smith 855d382aafbSBarry Smith /*MC 8561795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 857d382aafbSBarry Smith 858eca87e8dSBarry Smith Synopsis: 859aaa7dc30SBarry Smith #include <petscsys.h> 8601795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 861eca87e8dSBarry Smith 862eca87e8dSBarry Smith Not Collective 863eca87e8dSBarry Smith 864d382aafbSBarry Smith Input Parameter: 865d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 866d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 867d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8681795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8691795a4d1SJed Brown 8701795a4d1SJed Brown Output Parameter: 8711795a4d1SJed Brown + r1 - memory allocated in first chunk 8721795a4d1SJed Brown . r2 - memory allocated in second chunk 8731795a4d1SJed Brown . r3 - memory allocated in third chunk 8741795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8751795a4d1SJed Brown 8761795a4d1SJed Brown Level: developer 8771795a4d1SJed Brown 8781795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8791795a4d1SJed Brown 8801795a4d1SJed Brown Concepts: memory allocation 8811795a4d1SJed Brown 8821795a4d1SJed Brown M*/ 8832553b7ecSJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 8841795a4d1SJed Brown 8851795a4d1SJed Brown /*MC 886dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 887d382aafbSBarry Smith 888d382aafbSBarry Smith Synopsis: 889aaa7dc30SBarry Smith #include <petscsys.h> 890dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 891d382aafbSBarry Smith 892d382aafbSBarry Smith Not Collective 893d382aafbSBarry Smith 894d382aafbSBarry Smith Input Parameter: 895d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 896d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 897d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 898d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 899dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 900d382aafbSBarry Smith 901d382aafbSBarry Smith Output Parameter: 902d382aafbSBarry Smith + r1 - memory allocated in first chunk 903d382aafbSBarry Smith . r2 - memory allocated in second chunk 904d382aafbSBarry Smith . r3 - memory allocated in third chunk 905d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 906d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 907d382aafbSBarry Smith 908d382aafbSBarry Smith Level: developer 909d382aafbSBarry Smith 9101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 911d382aafbSBarry Smith 912d382aafbSBarry Smith Concepts: memory allocation 913d382aafbSBarry Smith 914d382aafbSBarry Smith M*/ 9152553b7ecSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 916d382aafbSBarry Smith 917d382aafbSBarry Smith /*MC 9181795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 919d382aafbSBarry Smith 920eca87e8dSBarry Smith Synopsis: 921aaa7dc30SBarry Smith #include <petscsys.h> 9221795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 923eca87e8dSBarry Smith 924eca87e8dSBarry Smith Not Collective 925eca87e8dSBarry Smith 926d382aafbSBarry Smith Input Parameter: 927d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 928d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 929d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 930d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9311795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9321795a4d1SJed Brown 9331795a4d1SJed Brown Output Parameter: 9341795a4d1SJed Brown + r1 - memory allocated in first chunk 9351795a4d1SJed Brown . r2 - memory allocated in second chunk 9361795a4d1SJed Brown . r3 - memory allocated in third chunk 9371795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9381795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9391795a4d1SJed Brown 9401795a4d1SJed Brown Level: developer 9411795a4d1SJed Brown 9421795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9431795a4d1SJed Brown 9441795a4d1SJed Brown Concepts: memory allocation 9451795a4d1SJed Brown 9461795a4d1SJed Brown M*/ 9472553b7ecSJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 948d382aafbSBarry Smith 949d382aafbSBarry Smith /*MC 950dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 951d382aafbSBarry Smith 952d382aafbSBarry Smith Synopsis: 953aaa7dc30SBarry Smith #include <petscsys.h> 954dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 955d382aafbSBarry Smith 956d382aafbSBarry Smith Not Collective 957d382aafbSBarry Smith 958d382aafbSBarry Smith Input Parameter: 959d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 960d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 961d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 962d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 963d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 964dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 965d382aafbSBarry Smith 966d382aafbSBarry Smith Output Parameter: 967d382aafbSBarry Smith + r1 - memory allocated in first chunk 968d382aafbSBarry Smith . r2 - memory allocated in second chunk 969d382aafbSBarry Smith . r3 - memory allocated in third chunk 970d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 971d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 972d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 973d382aafbSBarry Smith 974d382aafbSBarry Smith Level: developer 975d382aafbSBarry Smith 9761795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 977d382aafbSBarry Smith 978d382aafbSBarry Smith Concepts: memory allocation 979d382aafbSBarry Smith 980d382aafbSBarry Smith M*/ 9812553b7ecSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 982d382aafbSBarry Smith 983d382aafbSBarry Smith /*MC 9841795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 985d382aafbSBarry Smith 986eca87e8dSBarry Smith Synopsis: 987aaa7dc30SBarry Smith #include <petscsys.h> 9881795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 989eca87e8dSBarry Smith 990eca87e8dSBarry Smith Not Collective 991eca87e8dSBarry Smith 992d382aafbSBarry Smith Input Parameter: 993d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 994d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 995d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 996d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 997d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9981795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9991795a4d1SJed Brown 10001795a4d1SJed Brown Output Parameter: 10011795a4d1SJed Brown + r1 - memory allocated in first chunk 10021795a4d1SJed Brown . r2 - memory allocated in second chunk 10031795a4d1SJed Brown . r3 - memory allocated in third chunk 10041795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10051795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10061795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10071795a4d1SJed Brown 10081795a4d1SJed Brown Level: developer 10091795a4d1SJed Brown 10101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10111795a4d1SJed Brown 10121795a4d1SJed Brown Concepts: memory allocation 10131795a4d1SJed Brown M*/ 10142553b7ecSJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 10151795a4d1SJed Brown 10161795a4d1SJed Brown /*MC 1017dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith Synopsis: 1020aaa7dc30SBarry Smith #include <petscsys.h> 1021dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1022d382aafbSBarry Smith 1023d382aafbSBarry Smith Not Collective 1024d382aafbSBarry Smith 1025d382aafbSBarry Smith Input Parameter: 1026d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1027d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1028d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1029d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1030d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1031d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1032dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith Output Parameter: 1035d382aafbSBarry Smith + r1 - memory allocated in first chunk 1036d382aafbSBarry Smith . r2 - memory allocated in second chunk 1037d382aafbSBarry Smith . r3 - memory allocated in third chunk 1038d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1039d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1040d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1041eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1042d382aafbSBarry Smith 1043d382aafbSBarry Smith Level: developer 1044d382aafbSBarry Smith 10451795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1046d382aafbSBarry Smith 1047d382aafbSBarry Smith Concepts: memory allocation 1048d382aafbSBarry Smith 1049d382aafbSBarry Smith M*/ 10502553b7ecSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 1051d382aafbSBarry Smith 1052d382aafbSBarry Smith /*MC 10531795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10541795a4d1SJed Brown 10551795a4d1SJed Brown Synopsis: 1056aaa7dc30SBarry Smith #include <petscsys.h> 10571795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10581795a4d1SJed Brown 10591795a4d1SJed Brown Not Collective 10601795a4d1SJed Brown 10611795a4d1SJed Brown Input Parameter: 10621795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10631795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10641795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10651795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10661795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10671795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10681795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10691795a4d1SJed Brown 10701795a4d1SJed Brown Output Parameter: 10711795a4d1SJed Brown + r1 - memory allocated in first chunk 10721795a4d1SJed Brown . r2 - memory allocated in second chunk 10731795a4d1SJed Brown . r3 - memory allocated in third chunk 10741795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10751795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10761795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10771795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10781795a4d1SJed Brown 10791795a4d1SJed Brown Level: developer 10801795a4d1SJed Brown 10811795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10821795a4d1SJed Brown 10831795a4d1SJed Brown Concepts: memory allocation 10841795a4d1SJed Brown M*/ 10852553b7ecSJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 10861795a4d1SJed Brown 10871795a4d1SJed Brown /*MC 1088503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1089d382aafbSBarry Smith 1090eca87e8dSBarry Smith Synopsis: 1091aaa7dc30SBarry Smith #include <petscsys.h> 1092b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1093eca87e8dSBarry Smith 1094eca87e8dSBarry Smith Not Collective 1095eca87e8dSBarry Smith 1096d382aafbSBarry Smith Output Parameter: 1097b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1098d382aafbSBarry Smith 1099d382aafbSBarry Smith Level: beginner 1100d382aafbSBarry Smith 1101390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1102d382aafbSBarry Smith 1103d382aafbSBarry Smith Concepts: memory allocation 1104d382aafbSBarry Smith 1105d382aafbSBarry Smith M*/ 1106b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1107ad0619ddSBarry Smith 1108ad0619ddSBarry Smith /*MC 1109b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1110ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1111ad0619ddSBarry Smith 1112ad0619ddSBarry Smith Synopsis: 1113aaa7dc30SBarry Smith #include <petscsys.h> 1114b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1115ad0619ddSBarry Smith 1116ad0619ddSBarry Smith Not Collective 1117ad0619ddSBarry Smith 1118ad0619ddSBarry Smith Input Parameter: 1119b00a9115SJed Brown . obj - object memory is logged to 1120ad0619ddSBarry Smith 1121ad0619ddSBarry Smith Output Parameter: 1122b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1123ad0619ddSBarry Smith 1124ad0619ddSBarry Smith Level: developer 1125ad0619ddSBarry Smith 1126390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1127ad0619ddSBarry Smith 1128ad0619ddSBarry Smith Concepts: memory allocation 1129ad0619ddSBarry Smith 1130ad0619ddSBarry Smith M*/ 1131d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith /*MC 1134d382aafbSBarry Smith PetscFree - Frees memory 1135d382aafbSBarry Smith 1136eca87e8dSBarry Smith Synopsis: 1137aaa7dc30SBarry Smith #include <petscsys.h> 1138eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1139eca87e8dSBarry Smith 1140eca87e8dSBarry Smith Not Collective 1141eca87e8dSBarry Smith 1142d382aafbSBarry Smith Input Parameter: 1143390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith Level: beginner 1146d382aafbSBarry Smith 114749d7da52SJed Brown Notes: 1148390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1149390e1bf2SBarry Smith 115049d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1151d382aafbSBarry Smith 1152390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1153d382aafbSBarry Smith 1154d382aafbSBarry Smith Concepts: memory allocation 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith M*/ 115749d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith /*MC 1160d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1161d382aafbSBarry Smith 1162eca87e8dSBarry Smith Synopsis: 1163aaa7dc30SBarry Smith #include <petscsys.h> 1164eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1165eca87e8dSBarry Smith 1166eca87e8dSBarry Smith Not Collective 1167eca87e8dSBarry Smith 1168d382aafbSBarry Smith Input Parameter: 1169d382aafbSBarry Smith + memory1 - memory to free 1170d382aafbSBarry Smith - memory2 - 2nd memory to free 1171d382aafbSBarry Smith 1172d382aafbSBarry Smith Level: developer 1173d382aafbSBarry Smith 1174d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1175d382aafbSBarry Smith 1176d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1177d382aafbSBarry Smith 1178d382aafbSBarry Smith Concepts: memory allocation 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith M*/ 1181ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1182d382aafbSBarry Smith 1183d382aafbSBarry Smith /*MC 1184d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1185d382aafbSBarry Smith 1186eca87e8dSBarry Smith Synopsis: 1187aaa7dc30SBarry Smith #include <petscsys.h> 1188eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1189eca87e8dSBarry Smith 1190eca87e8dSBarry Smith Not Collective 1191eca87e8dSBarry Smith 1192d382aafbSBarry Smith Input Parameter: 1193d382aafbSBarry Smith + memory1 - memory to free 1194d382aafbSBarry Smith . memory2 - 2nd memory to free 1195d382aafbSBarry Smith - memory3 - 3rd memory to free 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith Level: developer 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith Concepts: memory allocation 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith M*/ 1206ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1207d382aafbSBarry Smith 1208d382aafbSBarry Smith /*MC 1209d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1210d382aafbSBarry Smith 1211eca87e8dSBarry Smith Synopsis: 1212aaa7dc30SBarry Smith #include <petscsys.h> 1213eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1214eca87e8dSBarry Smith 1215eca87e8dSBarry Smith Not Collective 1216eca87e8dSBarry Smith 1217d382aafbSBarry Smith Input Parameter: 1218d382aafbSBarry Smith + m1 - memory to free 1219d382aafbSBarry Smith . m2 - 2nd memory to free 1220d382aafbSBarry Smith . m3 - 3rd memory to free 1221d382aafbSBarry Smith - m4 - 4th memory to free 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Level: developer 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith Concepts: memory allocation 1230d382aafbSBarry Smith 1231d382aafbSBarry Smith M*/ 1232ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1233d382aafbSBarry Smith 1234d382aafbSBarry Smith /*MC 1235d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1236d382aafbSBarry Smith 1237eca87e8dSBarry Smith Synopsis: 1238aaa7dc30SBarry Smith #include <petscsys.h> 1239eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1240eca87e8dSBarry Smith 1241eca87e8dSBarry Smith Not Collective 1242eca87e8dSBarry Smith 1243d382aafbSBarry Smith Input Parameter: 1244d382aafbSBarry Smith + m1 - memory to free 1245d382aafbSBarry Smith . m2 - 2nd memory to free 1246d382aafbSBarry Smith . m3 - 3rd memory to free 1247d382aafbSBarry Smith . m4 - 4th memory to free 1248d382aafbSBarry Smith - m5 - 5th memory to free 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith Level: developer 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith Concepts: memory allocation 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith M*/ 1259ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1260d382aafbSBarry Smith 1261d382aafbSBarry Smith /*MC 1262d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1263d382aafbSBarry Smith 1264eca87e8dSBarry Smith Synopsis: 1265aaa7dc30SBarry Smith #include <petscsys.h> 1266eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1267eca87e8dSBarry Smith 1268eca87e8dSBarry Smith Not Collective 1269eca87e8dSBarry Smith 1270d382aafbSBarry Smith Input Parameter: 1271d382aafbSBarry Smith + m1 - memory to free 1272d382aafbSBarry Smith . m2 - 2nd memory to free 1273d382aafbSBarry Smith . m3 - 3rd memory to free 1274d382aafbSBarry Smith . m4 - 4th memory to free 1275d382aafbSBarry Smith . m5 - 5th memory to free 1276d382aafbSBarry Smith - m6 - 6th memory to free 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith Level: developer 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Concepts: memory allocation 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith M*/ 1288ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith /*MC 1291d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1292d382aafbSBarry Smith 1293eca87e8dSBarry Smith Synopsis: 1294aaa7dc30SBarry Smith #include <petscsys.h> 1295eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1296eca87e8dSBarry Smith 1297eca87e8dSBarry Smith Not Collective 1298eca87e8dSBarry Smith 1299d382aafbSBarry Smith Input Parameter: 1300d382aafbSBarry Smith + m1 - memory to free 1301d382aafbSBarry Smith . m2 - 2nd memory to free 1302d382aafbSBarry Smith . m3 - 3rd memory to free 1303d382aafbSBarry Smith . m4 - 4th memory to free 1304d382aafbSBarry Smith . m5 - 5th memory to free 1305d382aafbSBarry Smith . m6 - 6th memory to free 1306d382aafbSBarry Smith - m7 - 7th memory to free 1307d382aafbSBarry Smith 1308d382aafbSBarry Smith 1309d382aafbSBarry Smith Level: developer 1310d382aafbSBarry Smith 1311d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1312d382aafbSBarry Smith 1313d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1314d382aafbSBarry Smith PetscMalloc7() 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith Concepts: memory allocation 1317d382aafbSBarry Smith 1318d382aafbSBarry Smith M*/ 1319ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1320d382aafbSBarry Smith 1321ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1322ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1323efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1324efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13253221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1326ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 1327efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith /* 1331c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1332c1706be6SHong Zhang */ 1333c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1334c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1335c1706be6SHong Zhang 1336c1706be6SHong Zhang /* 1337a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1338a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1339a5057860SBarry Smith timing etc. 1340a5057860SBarry Smith */ 1341a5057860SBarry Smith typedef double PetscLogDouble; 1342a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1343a5057860SBarry Smith 1344a5057860SBarry Smith /* 134566d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1346d382aafbSBarry Smith */ 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13520acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1353efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1355574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1356014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith /*E 1359d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1360d382aafbSBarry Smith 1361d382aafbSBarry Smith Level: beginner 1362d382aafbSBarry Smith 136394fbd55eSBarry Smith Notes: Use of this should be avoided if one can directly use MPI_Datatype instead. 136494fbd55eSBarry Smith 1365d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1366d382aafbSBarry Smith 1367d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1368d382aafbSBarry Smith PetscDataTypeGetSize() 1369d382aafbSBarry Smith 1370d382aafbSBarry Smith E*/ 1371d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1372570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 13736a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1374d382aafbSBarry Smith 1375d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1376d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1377d382aafbSBarry Smith #else 1378ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1379d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 138059a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 138159a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1382570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1383570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1384d382aafbSBarry Smith #else 1385d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1386d382aafbSBarry Smith #endif 1387d382aafbSBarry Smith #endif 1388ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1389d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 139059a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 139159a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1392570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1393570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1394d382aafbSBarry Smith #else 1395d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1396d382aafbSBarry Smith #endif 1397d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1398d382aafbSBarry Smith 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14028e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1403d382aafbSBarry Smith 1404d382aafbSBarry Smith /* 1405d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1406d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1407d382aafbSBarry Smith functionality and/or error checking. 1408d382aafbSBarry Smith */ 1409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1413d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14252f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14302c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 143347340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14346fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14356991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14366991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1438d382aafbSBarry Smith 1439573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1440573b0fb4SBarry Smith 1441d382aafbSBarry Smith /*S 1442d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1443d382aafbSBarry Smith 1444d382aafbSBarry Smith Level: intermediate 1445d382aafbSBarry Smith 1446d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1447d382aafbSBarry Smith S*/ 1448d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1449d382aafbSBarry Smith 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1453d382aafbSBarry Smith 1454a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1455a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1456a53986e1SJed Brown 1457d382aafbSBarry Smith /* 1458d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1459d382aafbSBarry Smith */ 1460367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1461570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1462014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14632414b3c7SJed Brown #else 14642414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14652414b3c7SJed Brown #endif 1466570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1467014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1468014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1469d9822059SBarry Smith #else 1470d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1471d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1472d9822059SBarry Smith #endif 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1474d382aafbSBarry Smith 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1477eb3f98d2SBarry Smith 1478d382aafbSBarry Smith /*S 1479d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1480d382aafbSBarry Smith 1481d382aafbSBarry Smith Level: beginner 1482d382aafbSBarry Smith 14832981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1484d382aafbSBarry Smith 14852b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1486d382aafbSBarry Smith S*/ 1487d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1488d382aafbSBarry Smith 1489270bf2e7SJed Brown /*MC 1490127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1491127c8a3bSJed Brown 1492127c8a3bSJed Brown Level: developer 1493127c8a3bSJed Brown 1494127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1495127c8a3bSJed Brown 1496127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1497127c8a3bSJed Brown M*/ 149806e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 149906e41213SSatish Balay typedef int PetscObjectId; 150006e41213SSatish Balay #else 1501bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 150206e41213SSatish Balay #endif 1503127c8a3bSJed Brown 1504127c8a3bSJed Brown /*MC 1505270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1506270bf2e7SJed Brown 1507270bf2e7SJed Brown Level: developer 1508270bf2e7SJed Brown 1509270bf2e7SJed Brown Notes: 1510270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1511270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1512270bf2e7SJed Brown 15138dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1514270bf2e7SJed Brown M*/ 151506e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 151606e41213SSatish Balay typedef int PetscObjectState; 151706e41213SSatish Balay #else 1518bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 151906e41213SSatish Balay #endif 1520270bf2e7SJed Brown 1521d382aafbSBarry Smith /*S 1522140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1523d382aafbSBarry Smith by string name 1524d382aafbSBarry Smith 1525d382aafbSBarry Smith Level: advanced 1526d382aafbSBarry Smith 1527140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1528d382aafbSBarry Smith S*/ 1529140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1530d382aafbSBarry Smith 1531d382aafbSBarry Smith /*E 1532d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1533d382aafbSBarry Smith 1534d382aafbSBarry Smith Level: beginner 1535d382aafbSBarry Smith 15361cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15371cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15381cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15391cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15401cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1541d382aafbSBarry Smith 1542d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1543d382aafbSBarry Smith E*/ 1544d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1545d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1546d6a4318aSJed Brown 1547639ff905SBarry Smith /* 1548639ff905SBarry Smith Defines PETSc error handling. 1549639ff905SBarry Smith */ 1550639ff905SBarry Smith #include <petscerror.h> 1551d382aafbSBarry Smith 15520700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1553014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1554014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1555014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1556d382aafbSBarry Smith 1557d382aafbSBarry Smith /* 1558d382aafbSBarry Smith Routines that get memory usage information from the OS 1559d382aafbSBarry Smith */ 1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1563b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1564d382aafbSBarry Smith 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1567d382aafbSBarry Smith 1568d382aafbSBarry Smith /* 1569d382aafbSBarry Smith Initialization of PETSc 1570d382aafbSBarry Smith */ 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1581d382aafbSBarry Smith 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1583607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1584d382aafbSBarry Smith 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1589d382aafbSBarry Smith 1590d382aafbSBarry Smith /* 1591d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15922981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1593d382aafbSBarry Smith */ 1594638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1595638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1596638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1597d382aafbSBarry Smith 1598d382aafbSBarry Smith /* 1599d382aafbSBarry Smith Functions that can act on any PETSc object. 1600d382aafbSBarry Smith */ 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1619bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1620bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16230eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16240eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1626d382aafbSBarry Smith 1627665c2dedSJed Brown #include <petscviewertypes.h> 1628639ff905SBarry Smith #include <petscoptions.h> 1629639ff905SBarry Smith 16300633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16310633abcbSJed Brown 1632639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1633c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1634dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1635639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16360005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16370005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1645685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 16484099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1652d382aafbSBarry Smith 1653e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16547aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1655e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1656e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1657e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1658e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1659e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1660e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1661e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1662e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1663e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 166415681b3cSBarry Smith 1665ec7429eaSBarry Smith #else 16667aab2a10SBarry Smith #define PetscSAWsBlock() 0 1667e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1668e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1669e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1670e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1671e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1672e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1673e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1674e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1675e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 167615681b3cSBarry Smith 1677ec7429eaSBarry Smith #endif 1678b90c6cbeSBarry Smith 16797d5d4d99SBarry Smith typedef void* PetscDLHandle; 1680e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 168182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 168282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 168382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16847d5d4d99SBarry Smith 16855fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1686a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16875fe58b6fSBarry Smith #endif 16887eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1689a64a8e02SBarry Smith 1690d382aafbSBarry Smith /*S 1691140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1692d382aafbSBarry Smith 16931d0fab5eSBarry Smith Level: developer 1694d382aafbSBarry Smith 16951d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16961d0fab5eSBarry Smith 1697140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1698d382aafbSBarry Smith S*/ 1699140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1700d382aafbSBarry Smith 1701140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1702140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1703140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1704140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1705140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1706140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1707d382aafbSBarry Smith 1708d382aafbSBarry Smith /* 1709503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1710d382aafbSBarry Smith link libraries that will be loaded as needed. 1711d382aafbSBarry Smith */ 1712a240a19fSJed Brown 1713a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1714a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1715140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17161c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17171c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1718140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1719140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1720140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1721140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1722d382aafbSBarry Smith 1723d382aafbSBarry Smith /*S 1724d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1725d382aafbSBarry Smith 1726d382aafbSBarry Smith Level: advanced 1727d382aafbSBarry Smith 1728d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1729d382aafbSBarry Smith S*/ 1730d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1731014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1732014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1733014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1739d382aafbSBarry Smith 1740d382aafbSBarry Smith /* 1741d382aafbSBarry Smith Useful utility routines 1742d382aafbSBarry Smith */ 1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1749*6ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxInt(MPI_Comm,PetscInt[],PetscInt[]); 1750*6ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxReal(MPI_Comm,PetscReal[],PetscReal[]); 1751d382aafbSBarry Smith 1752503cfb0cSBarry Smith /* 1753ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1754503cfb0cSBarry Smith 1755503cfb0cSBarry Smith Notes: This is useful in cases like 1756503cfb0cSBarry Smith $ int *a; 1757ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17581cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1759503cfb0cSBarry Smith */ 1760d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1761503cfb0cSBarry Smith 1762d382aafbSBarry Smith /*MC 1763d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1764d382aafbSBarry Smith 1765d382aafbSBarry Smith Synopsis: 1766aaa7dc30SBarry Smith #include <petscsys.h> 1767d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1768d382aafbSBarry Smith 1769eca87e8dSBarry Smith Not Collective 1770eca87e8dSBarry Smith 1771d382aafbSBarry Smith Input Parameters: 1772d382aafbSBarry Smith . format - the usual printf() format string 1773d382aafbSBarry Smith 1774d382aafbSBarry Smith Level: developer 1775d382aafbSBarry Smith 1776d382aafbSBarry Smith Fortran Note: 1777d382aafbSBarry Smith This routine is not supported in Fortran. 1778d382aafbSBarry Smith 1779d382aafbSBarry Smith Concepts: help messages^printing 1780d382aafbSBarry Smith Concepts: printing^help messages 1781d382aafbSBarry Smith 1782d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1783d382aafbSBarry Smith M*/ 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1785d382aafbSBarry Smith 1786fcfd50ebSBarry Smith /* 1787fcfd50ebSBarry Smith Defines PETSc profiling. 1788fcfd50ebSBarry Smith */ 17892c8e378dSBarry Smith #include <petsclog.h> 1790fcfd50ebSBarry Smith 1791fcfd50ebSBarry Smith /* 1792fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1793fcfd50ebSBarry Smith */ 1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1801fcfd50ebSBarry Smith 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1805d382aafbSBarry Smith 1806d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 180896a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 180974ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1810d382aafbSBarry Smith #endif 1811d382aafbSBarry Smith 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18140ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1819d382aafbSBarry Smith 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1821d382aafbSBarry Smith 1822d382aafbSBarry Smith /*S 1823d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1824d382aafbSBarry Smith 1825d382aafbSBarry Smith Level: advanced 1826d382aafbSBarry Smith 1827d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1828d382aafbSBarry Smith S*/ 1829014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1830d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1836b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith /* 1839d382aafbSBarry Smith For use in debuggers 1840d382aafbSBarry Smith */ 1841014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1842014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1846d382aafbSBarry Smith 1847a663daf8SBarry Smith #include <stddef.h> 1848a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1849d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1850d382aafbSBarry Smith #include <stdlib.h> 1851d382aafbSBarry Smith #endif 18526c7e564aSBarry Smith 18534a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1854d382aafbSBarry Smith #include <xmmintrin.h> 1855d382aafbSBarry Smith #endif 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith /*@C 1858d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1859d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1860d382aafbSBarry Smith PetscMemmove() in that case. 1861d382aafbSBarry Smith 1862d382aafbSBarry Smith Not Collective 1863d382aafbSBarry Smith 1864d382aafbSBarry Smith Input Parameters: 1865d382aafbSBarry Smith + b - pointer to initial memory space 1866d382aafbSBarry Smith - n - length (in bytes) of space to copy 1867d382aafbSBarry Smith 1868d382aafbSBarry Smith Output Parameter: 1869d382aafbSBarry Smith . a - pointer to copy space 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith Level: intermediate 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith Compile Option: 1874d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1875d382aafbSBarry Smith for memory copies on double precision values. 1876d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1877d382aafbSBarry Smith for memory copies on double precision values. 1878d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1879d382aafbSBarry Smith for memory copies on double precision values. 1880d382aafbSBarry Smith 1881d382aafbSBarry Smith Note: 1882d382aafbSBarry Smith This routine is analogous to memcpy(). 1883d382aafbSBarry Smith 1884503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1885503cfb0cSBarry Smith 1886d382aafbSBarry Smith Concepts: memory^copying 1887d382aafbSBarry Smith Concepts: copying^memory 1888d382aafbSBarry Smith 1889d382aafbSBarry Smith .seealso: PetscMemmove() 1890d382aafbSBarry Smith 1891d382aafbSBarry Smith @*/ 18927087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1893d382aafbSBarry Smith { 1894d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1895c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1896c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1897a7e36092SMatthew G Knepley PetscFunctionBegin; 1898e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1899e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1900a7e36092SMatthew G Knepley #else 1901d382aafbSBarry Smith PetscFunctionBegin; 1902a7e36092SMatthew G Knepley #endif 1903a47a537aSLisandro Dalcin if (a != b && n > 0) { 1904d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1905e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1906d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1907d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1908d382aafbSBarry Smith #endif 1909d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1910c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1911d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1912d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1913c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1914c5df96a5SBarry Smith PetscErrorCode ierr; 1915c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19168b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1917d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1918d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1919d382aafbSBarry Smith #else 1920d382aafbSBarry Smith size_t i; 1921d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1922d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1923d382aafbSBarry Smith #endif 1924d382aafbSBarry Smith } else { 1925d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1926d382aafbSBarry Smith } 1927d382aafbSBarry Smith #else 1928d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1929d382aafbSBarry Smith #endif 1930d382aafbSBarry Smith } 1931d382aafbSBarry Smith PetscFunctionReturn(0); 1932d382aafbSBarry Smith } 1933d382aafbSBarry Smith 1934d382aafbSBarry Smith /*@C 1935d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1936d382aafbSBarry Smith 1937d382aafbSBarry Smith Not Collective 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith Input Parameters: 1940d382aafbSBarry Smith + a - pointer to beginning memory location 1941d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith Level: intermediate 1944d382aafbSBarry Smith 1945d382aafbSBarry Smith Compile Option: 1946d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1947d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1948d382aafbSBarry Smith 1949503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1950503cfb0cSBarry Smith 1951d382aafbSBarry Smith Concepts: memory^zeroing 1952d382aafbSBarry Smith Concepts: zeroing^memory 1953d382aafbSBarry Smith 1954d382aafbSBarry Smith .seealso: PetscMemcpy() 1955d382aafbSBarry Smith @*/ 19567087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1957d382aafbSBarry Smith { 1958d382aafbSBarry Smith if (n > 0) { 1959d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1960e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1963d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1964d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1965d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1966d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1967d382aafbSBarry Smith } else { 1968d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1969d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1970d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1971d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1972d382aafbSBarry Smith } else { 1973d382aafbSBarry Smith #endif 1974d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1975d382aafbSBarry Smith bzero((char *)a,n); 1976d382aafbSBarry Smith #else 1977d382aafbSBarry Smith memset((char*)a,0,n); 1978d382aafbSBarry Smith #endif 1979d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1980d382aafbSBarry Smith } 1981d382aafbSBarry Smith #endif 1982d382aafbSBarry Smith } 1983d382aafbSBarry Smith return 0; 1984d382aafbSBarry Smith } 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith /*MC 1987d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1988d382aafbSBarry Smith 1989eca87e8dSBarry Smith Synopsis: 1990aaa7dc30SBarry Smith #include <petscsys.h> 1991eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1992eca87e8dSBarry Smith 1993d382aafbSBarry Smith Not Collective 1994d382aafbSBarry Smith 1995d382aafbSBarry Smith Input Parameters: 1996d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1997d382aafbSBarry Smith . n - number of elements to fetch 1998d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 199950d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2000d382aafbSBarry Smith 2001d382aafbSBarry Smith Level: developer 2002d382aafbSBarry Smith 2003d382aafbSBarry Smith Notes: 2004d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2005d382aafbSBarry Smith 200650d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 200750d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 200850d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 200963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 201063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 201163cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2014d382aafbSBarry Smith address). 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith Concepts: memory 2017d382aafbSBarry Smith M*/ 2018d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2019d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2020d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2021d382aafbSBarry Smith } while (0) 2022d382aafbSBarry Smith 2023d382aafbSBarry Smith /* 2024d382aafbSBarry Smith Determine if some of the kernel computation routines use 2025d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2026d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2027d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2028e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2029d382aafbSBarry Smith */ 2030d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2033d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2034d382aafbSBarry Smith #endif 2035d382aafbSBarry Smith 20365a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20375a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2038d382aafbSBarry Smith #endif 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2041d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2042d382aafbSBarry Smith #endif 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2045d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2046d382aafbSBarry Smith #endif 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2049d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2050d382aafbSBarry Smith #endif 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2053d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2057d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2058d382aafbSBarry Smith #endif 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2061d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2062d382aafbSBarry Smith #endif 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2065d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2066d382aafbSBarry Smith #endif 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2069d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2070d382aafbSBarry Smith #endif 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2073d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2074d382aafbSBarry Smith #endif 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2077d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2078d382aafbSBarry Smith #endif 2079d382aafbSBarry Smith 2080d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2081d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2082d382aafbSBarry Smith #endif 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2085d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2086d382aafbSBarry Smith #endif 2087d382aafbSBarry Smith 2088d382aafbSBarry Smith #endif 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith /* 2091d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2092d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2093d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2094d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2095d382aafbSBarry Smith ugly extern "C" {} wrappers. 2096d382aafbSBarry Smith */ 2097d382aafbSBarry Smith #if defined(__cplusplus) 2098d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2099d382aafbSBarry Smith #define EXTERN_C_END } 2100d382aafbSBarry Smith #else 2101d382aafbSBarry Smith #define EXTERN_C_BEGIN 2102d382aafbSBarry Smith #define EXTERN_C_END 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2106d382aafbSBarry Smith 2107d382aafbSBarry Smith /*MC 2108d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2109d382aafbSBarry Smith communication 2110d382aafbSBarry Smith 2111d382aafbSBarry Smith Level: beginner 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2114d382aafbSBarry Smith 2115d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2116d382aafbSBarry Smith M*/ 2117d382aafbSBarry Smith 2118d382aafbSBarry Smith /*MC 2119d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2120390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2121390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2122390e1bf2SBarry Smith 2123390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2124390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscScalar 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith Level: beginner 2127d382aafbSBarry Smith 2128390e1bf2SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL, PetscComplex, MPIU_INT 2129d382aafbSBarry Smith M*/ 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith /*MC 21328619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21338619c96cSJed Brown 21348619c96cSJed Brown Synopsis: 21358619c96cSJed Brown #include <petscsys.h> 21368619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21378619c96cSJed Brown 21388619c96cSJed Brown Level: beginner 21398619c96cSJed Brown 2140390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2141390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscComplex 2142390e1bf2SBarry Smith 2143390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2144390e1bf2SBarry Smith 21458cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21468619c96cSJed Brown 21478619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21488619c96cSJed Brown M*/ 21498619c96cSJed Brown 21508619c96cSJed Brown /*MC 2151d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith Level: beginner 2154d382aafbSBarry Smith 2155390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2156390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscReal 2157390e1bf2SBarry Smith 2158390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2159390e1bf2SBarry Smith 2160390e1bf2SBarry Smith .seealso: PetscScalar, PetscComplex, MPIU_REAL, MPIU_SCALAR 2161d382aafbSBarry Smith M*/ 2162d382aafbSBarry Smith 2163d382aafbSBarry Smith /*MC 2164d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2165d382aafbSBarry Smith 2166d382aafbSBarry Smith Level: beginner 2167d382aafbSBarry Smith 2168d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2169d382aafbSBarry Smith pass this value 2170d382aafbSBarry Smith 2171390e1bf2SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT, MPIU_REAL, MPIU_COMPLEX 2172d382aafbSBarry Smith M*/ 2173d382aafbSBarry Smith 2174d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2175d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2176014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2177014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2178d382aafbSBarry Smith #else 2179d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2180d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2181d382aafbSBarry Smith #endif 2182d382aafbSBarry Smith #endif 2183d382aafbSBarry Smith 2184d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2185d382aafbSBarry Smith 2186d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2187d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2188d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2189d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2190d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2191d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2192d382aafbSBarry Smith 219361b0d812SBarry Smith /*@C 219461b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 219561b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 219661b0d812SBarry Smith 219761b0d812SBarry Smith Not Collective 219861b0d812SBarry Smith 219961b0d812SBarry Smith Input Parameter: 220061b0d812SBarry Smith . a - the PetscInt value 220161b0d812SBarry Smith 220261b0d812SBarry Smith Output Parameter: 220361b0d812SBarry Smith . b - the resulting PetscBLASInt value 220461b0d812SBarry Smith 220561b0d812SBarry Smith Level: advanced 220661b0d812SBarry Smith 220761b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 220861b0d812SBarry Smith @*/ 2209c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2210c5df96a5SBarry Smith { 2211c5df96a5SBarry Smith PetscFunctionBegin; 2212ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2213c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2214c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2215c5df96a5SBarry Smith #endif 2216c5df96a5SBarry Smith PetscFunctionReturn(0); 2217c5df96a5SBarry Smith } 2218c5df96a5SBarry Smith 221961b0d812SBarry Smith /*@C 222061b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 222161b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 222261b0d812SBarry Smith 222361b0d812SBarry Smith Not Collective 222461b0d812SBarry Smith 222561b0d812SBarry Smith Input Parameter: 222661b0d812SBarry Smith . a - the PetscInt value 222761b0d812SBarry Smith 222861b0d812SBarry Smith Output Parameter: 222961b0d812SBarry Smith . b - the resulting PetscMPIInt value 223061b0d812SBarry Smith 223161b0d812SBarry Smith Level: advanced 223261b0d812SBarry Smith 223361b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 223461b0d812SBarry Smith @*/ 22354dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22364dc2109aSBarry Smith { 22374dc2109aSBarry Smith PetscFunctionBegin; 2238ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22394dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22404dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22414dc2109aSBarry Smith #endif 22424dc2109aSBarry Smith PetscFunctionReturn(0); 22434dc2109aSBarry Smith } 22444dc2109aSBarry Smith 2245bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 22462f18eb33SBarry Smith 22472f18eb33SBarry Smith /*@C 22482f18eb33SBarry Smith 22492f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22502f18eb33SBarry Smith 22512f18eb33SBarry Smith Not Collective 22522f18eb33SBarry Smith 22532f18eb33SBarry Smith Input Parameter: 22542f18eb33SBarry Smith + a - the PetscReal value 22552f18eb33SBarry Smith - b - the second value 22562f18eb33SBarry Smith 2257390e1bf2SBarry Smith Returns: 2258390e1bf2SBarry Smith the result as a PetscInt value 22592f18eb33SBarry Smith 2260bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 22612f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 22622f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22632f18eb33SBarry Smith 22642f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 22652f18eb33SBarry Smith 22662f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 22672f18eb33SBarry Smith 22682f18eb33SBarry Smith Level: advanced 22692f18eb33SBarry Smith 2270390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 22712f18eb33SBarry Smith @*/ 22722f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 22732f18eb33SBarry Smith { 2274bafee8b4SSatish Balay PetscInt64 r; 22752f18eb33SBarry Smith 2276bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 22772f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 22782f18eb33SBarry Smith return (PetscInt) r; 22792f18eb33SBarry Smith } 22802f18eb33SBarry Smith 22812f18eb33SBarry Smith /*@C 22822f18eb33SBarry Smith 22832f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 22842f18eb33SBarry Smith 22852f18eb33SBarry Smith Not Collective 22862f18eb33SBarry Smith 22872f18eb33SBarry Smith Input Parameter: 22882f18eb33SBarry Smith + a - the PetscInt value 22892f18eb33SBarry Smith - b - the second value 22902f18eb33SBarry Smith 2291390e1bf2SBarry Smith Returns: 2292390e1bf2SBarry Smith the result as a PetscInt value 22932f18eb33SBarry Smith 2294bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 22952f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 22962f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22972f18eb33SBarry Smith 22982f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 22992f18eb33SBarry Smith 23002f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23012f18eb33SBarry Smith 23022f18eb33SBarry Smith Level: advanced 23032f18eb33SBarry Smith 2304390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23052f18eb33SBarry Smith @*/ 23062f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23072f18eb33SBarry Smith { 2308bafee8b4SSatish Balay PetscInt64 r; 23092f18eb33SBarry Smith 2310bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23112f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23122f18eb33SBarry Smith return (PetscInt) r; 23132f18eb33SBarry Smith } 23142f18eb33SBarry Smith 2315f91af8c7SBarry Smith /*@C 2316f91af8c7SBarry Smith 2317f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2318f91af8c7SBarry Smith 2319f91af8c7SBarry Smith Not Collective 2320f91af8c7SBarry Smith 2321f91af8c7SBarry Smith Input Parameter: 2322f91af8c7SBarry Smith + a - the PetscInt value 2323f91af8c7SBarry Smith - b - the second value 2324f91af8c7SBarry Smith 2325390e1bf2SBarry Smith Returns: 2326390e1bf2SBarry Smith the result as a PetscInt value 2327f91af8c7SBarry Smith 2328bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2329f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2330f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2331f91af8c7SBarry Smith 2332f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2333f91af8c7SBarry Smith 2334f91af8c7SBarry Smith Level: advanced 2335f91af8c7SBarry Smith 2336390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2337f91af8c7SBarry Smith @*/ 2338f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2339f91af8c7SBarry Smith { 2340bafee8b4SSatish Balay PetscInt64 r; 2341f91af8c7SBarry Smith 2342bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2343f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2344f91af8c7SBarry Smith return (PetscInt) r; 2345f91af8c7SBarry Smith } 2346f91af8c7SBarry Smith 23472f18eb33SBarry Smith /*@C 23482f18eb33SBarry Smith 23492f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23502f18eb33SBarry Smith 23512f18eb33SBarry Smith Not Collective 23522f18eb33SBarry Smith 23532f18eb33SBarry Smith Input Parameter: 23542f18eb33SBarry Smith + a - the PetscInt value 23552f18eb33SBarry Smith - b - the second value 23562f18eb33SBarry Smith 23572f18eb33SBarry Smith Output Parameter:ma 2358390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 23592f18eb33SBarry Smith 2360bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 23612f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 23622f18eb33SBarry Smith 2363220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 23642f18eb33SBarry Smith 23652f18eb33SBarry Smith Level: advanced 23662f18eb33SBarry Smith 2367220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 23682f18eb33SBarry Smith @*/ 23692f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 23702f18eb33SBarry Smith { 2371bafee8b4SSatish Balay PetscInt64 r; 23722f18eb33SBarry Smith 23732f18eb33SBarry Smith PetscFunctionBegin; 2374bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23752f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 23762f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 23772f18eb33SBarry Smith #endif 2378f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2379f91af8c7SBarry Smith PetscFunctionReturn(0); 2380f91af8c7SBarry Smith } 2381f91af8c7SBarry Smith 2382f91af8c7SBarry Smith /*@C 2383f91af8c7SBarry Smith 2384fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2385f91af8c7SBarry Smith 2386f91af8c7SBarry Smith Not Collective 2387f91af8c7SBarry Smith 2388f91af8c7SBarry Smith Input Parameter: 2389f91af8c7SBarry Smith + a - the PetscInt value 2390f91af8c7SBarry Smith - b - the second value 2391f91af8c7SBarry Smith 2392f91af8c7SBarry Smith Output Parameter:ma 2393390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2394f91af8c7SBarry Smith 2395bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2396f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2397f91af8c7SBarry Smith 2398f91af8c7SBarry Smith Level: advanced 2399f91af8c7SBarry Smith 2400390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2401f91af8c7SBarry Smith @*/ 2402f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2403f91af8c7SBarry Smith { 2404bafee8b4SSatish Balay PetscInt64 r; 2405f91af8c7SBarry Smith 2406f91af8c7SBarry Smith PetscFunctionBegin; 2407bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2408f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2409f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2410f91af8c7SBarry Smith #endif 2411f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24122f18eb33SBarry Smith PetscFunctionReturn(0); 24132f18eb33SBarry Smith } 2414c5df96a5SBarry Smith 2415d382aafbSBarry Smith /* 24162981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2417d382aafbSBarry Smith */ 2418d382aafbSBarry Smith #if defined(hz) 2419d382aafbSBarry Smith #undef hz 2420d382aafbSBarry Smith #endif 2421d382aafbSBarry Smith 2422d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2423d382aafbSBarry Smith 2424d382aafbSBarry Smith 2425d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2426d382aafbSBarry Smith #include <limits.h> 2427d382aafbSBarry Smith #endif 2428d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2429d382aafbSBarry Smith #include <sys/param.h> 2430d382aafbSBarry Smith #endif 2431d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2432d382aafbSBarry Smith #include <sys/types.h> 2433d382aafbSBarry Smith #endif 2434d382aafbSBarry Smith #if defined(MAXPATHLEN) 2435d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2436d382aafbSBarry Smith #elif defined(MAX_PATH) 2437d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2438d382aafbSBarry Smith #elif defined(_MAX_PATH) 2439d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2440d382aafbSBarry Smith #else 2441d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2442d382aafbSBarry Smith #endif 2443d382aafbSBarry Smith 2444d382aafbSBarry Smith /*MC 2445d382aafbSBarry Smith 244666d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 244766d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 244866d79e26SBarry Smith 244966d79e26SBarry Smith 245066d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 245166d79e26SBarry Smith 245266d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 245366d79e26SBarry Smith 245466d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 245566d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 245666d79e26SBarry Smith 245766d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 245866d79e26SBarry Smith 245966d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 246066d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 246166d79e26SBarry Smith version number (x.y.z). 246266d79e26SBarry Smith 246366d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 246466d79e26SBarry Smith 246566d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 246666d79e26SBarry Smith 246766d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 246866d79e26SBarry Smith 246966d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 247066d79e26SBarry Smith 247166d79e26SBarry Smith Level: intermediate 247266d79e26SBarry Smith 247366d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 247466d79e26SBarry Smith 247566d79e26SBarry Smith M*/ 247666d79e26SBarry Smith 247766d79e26SBarry Smith /*MC 247866d79e26SBarry Smith 24791b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 24801b266c99SBarry Smith of every function and module definition you need something like 2481d382aafbSBarry Smith 2482d382aafbSBarry Smith $ 2483af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 24840f665fc7SPatrick Sanan $ use petscXXX 24851b266c99SBarry Smith 2486692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 24871b266c99SBarry Smith 2488d382aafbSBarry Smith $ XXX variablename 24891b266c99SBarry Smith $ type(tXXX) variablename 24901b266c99SBarry Smith 2491692afcd8SPatrick Sanan For example, 24921b266c99SBarry Smith 2493bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 24941b266c99SBarry Smith $ use petscvec 2495d382aafbSBarry Smith $ 2496692afcd8SPatrick Sanan $ Vec b 2497692afcd8SPatrick Sanan $ type(tVec) x 2498d382aafbSBarry Smith 2499d382aafbSBarry Smith Level: beginner 2500d382aafbSBarry Smith 2501d382aafbSBarry Smith M*/ 2502d382aafbSBarry Smith 2503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2506014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2507014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2508014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 250927710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25105f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2511d382aafbSBarry Smith 2512014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 251322ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2514014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 251560e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2516d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2519014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25206c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 252117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 252217d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2524014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 252517df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2526014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 252739f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2529745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 253039f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 25346c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 25356c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2536e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2537d382aafbSBarry Smith 2538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2540d382aafbSBarry Smith 254176bdecfbSBarry Smith /*J 2542d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2543d382aafbSBarry Smith 2544d382aafbSBarry Smith Level: beginner 2545d382aafbSBarry Smith 254625ccb61fSToby Isaac Notes: to use SPRNG or RANDOM123 you must have ./configure PETSc 254725ccb61fSToby Isaac with the option --download-sprng or --download-random123 2548d382aafbSBarry Smith 25498f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 255076bdecfbSBarry Smith J*/ 255119fd82e9SBarry Smith typedef const char* PetscRandomType; 2552d382aafbSBarry Smith #define PETSCRAND "rand" 2553d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2554d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2555c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 255625ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2557d382aafbSBarry Smith 2558d382aafbSBarry Smith /* Logging support */ 2559014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2560d382aafbSBarry Smith 2561607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2562d382aafbSBarry Smith 2563d382aafbSBarry Smith /*S 2564d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2565d382aafbSBarry Smith 2566d382aafbSBarry Smith Level: intermediate 2567d382aafbSBarry Smith 2568d382aafbSBarry Smith Concepts: random numbers 2569d382aafbSBarry Smith 2570d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2571d382aafbSBarry Smith S*/ 2572d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2573d382aafbSBarry Smith 2574d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2575140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2576d382aafbSBarry Smith 2577bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 257819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 258019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2581685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2583d382aafbSBarry Smith 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2593d382aafbSBarry Smith 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 260197540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 260297540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2603d382aafbSBarry Smith 2604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2615c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2616e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2617c891a504SStefano Zampini #endif 2618d382aafbSBarry Smith 2619d382aafbSBarry Smith /* 2620d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2621d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2622d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2623d382aafbSBarry Smith PetscBinarySeek(). 2624d382aafbSBarry Smith */ 2625d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2626d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2627d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2628d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2629d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2630d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2631d382aafbSBarry Smith 2632d382aafbSBarry Smith /*E 2633d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2634d382aafbSBarry Smith 2635d382aafbSBarry Smith Level: advanced 2636d382aafbSBarry Smith 2637d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2638d382aafbSBarry Smith E*/ 2639d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2643d382aafbSBarry Smith 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2650d382aafbSBarry Smith 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2656cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2657cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2658d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2659d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2660d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2661d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 26626afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 26636afbe7ddSJed Brown MPI_Request**,MPI_Request**, 26646afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 26656afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 26666afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2667d382aafbSBarry Smith 26686145cd65SJed Brown /*E 26696145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 26706145cd65SJed Brown 26716145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 26726145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 26736145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 26746145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 26756145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 26761654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 26771654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 26786145cd65SJed Brown 26796145cd65SJed Brown Level: developer 26806145cd65SJed Brown 26816145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 26826145cd65SJed Brown E*/ 26836145cd65SJed Brown typedef enum { 26846145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 26856145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 26861654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 268712af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 26886145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 26896145cd65SJed Brown } PetscBuildTwoSidedType; 26906145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 26916145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 26926145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 26936145cd65SJed Brown 2694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2695d382aafbSBarry Smith 2696d382aafbSBarry Smith /*E 2697d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2698d382aafbSBarry Smith 2699d382aafbSBarry Smith Level: beginner 2700d382aafbSBarry Smith 2701d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2702d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2703d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2704d382aafbSBarry Smith E*/ 27056fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2706d382aafbSBarry Smith 2707d382aafbSBarry Smith /*MC 2708d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2709d382aafbSBarry Smith 2710d382aafbSBarry Smith Level: beginner 2711d382aafbSBarry Smith 2712d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2713eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2714eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2715d382aafbSBarry Smith 2716d382aafbSBarry Smith M*/ 2717d382aafbSBarry Smith 2718d382aafbSBarry Smith /*MC 2719d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2720d382aafbSBarry Smith value into that location 2721d382aafbSBarry Smith 2722d382aafbSBarry Smith Level: beginner 2723d382aafbSBarry Smith 2724d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2725eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2726eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2727d382aafbSBarry Smith 2728d382aafbSBarry Smith M*/ 2729d382aafbSBarry Smith 2730d382aafbSBarry Smith /*MC 2731d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2732d382aafbSBarry Smith 2733d382aafbSBarry Smith Level: beginner 2734d382aafbSBarry Smith 2735d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2736d382aafbSBarry Smith 2737d382aafbSBarry Smith M*/ 2738d382aafbSBarry Smith 2739ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2740ce94432eSBarry Smith 274145487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 274245487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 274345487dadSJed Brown 2744d382aafbSBarry Smith /*S 2745306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2746306c2d5bSBarry Smith 2747306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2748306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 27493bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2750306c2d5bSBarry Smith 2751306c2d5bSBarry Smith Sample Usage: 2752306c2d5bSBarry Smith PetscSubcommCreate() 2753306c2d5bSBarry Smith PetscSubcommSetNumber() 2754306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2755306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2756306c2d5bSBarry Smith PetscSubcommDestroy() 2757d382aafbSBarry Smith 2758d382aafbSBarry Smith Level: advanced 2759d382aafbSBarry Smith 2760d382aafbSBarry Smith Concepts: communicator, create 2761306c2d5bSBarry Smith 2762306c2d5bSBarry Smith Notes: 2763306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 27643bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2765306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2766306c2d5bSBarry Smith 2767306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2768306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2769306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2770306c2d5bSBarry Smith 2771306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2772306c2d5bSBarry Smith are performed. 2773306c2d5bSBarry Smith 2774306c2d5bSBarry Smith 2775306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2776306c2d5bSBarry Smith 2777d382aafbSBarry Smith S*/ 2778d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2779d382aafbSBarry Smith 2780d382aafbSBarry Smith struct _n_PetscSubcomm { 2781d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2782d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2783306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 278445487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 278545487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2786708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 278745487dadSJed Brown PetscSubcommType type; 2788e5acf8a4SHong Zhang char *subcommprefix; 2789d382aafbSBarry Smith }; 2790d382aafbSBarry Smith 2791c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2792306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 279336be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2794014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2795014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2796014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 279865d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2799053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2800f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2801e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2802d382aafbSBarry Smith 28030f453b92SJed Brown /*S 28049962606eSBarry Smith PetscHeap - A simple class for managing heaps 28059962606eSBarry Smith 28069962606eSBarry Smith Level: intermediate 28079962606eSBarry Smith 28089962606eSBarry Smith Concepts: random numbers 28099962606eSBarry Smith 28109962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 28119962606eSBarry Smith S*/ 28129962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 28139962606eSBarry Smith 28149962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 28159962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 28169962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 28179962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 28189962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 28199962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 28209962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 28219962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 28229962606eSBarry Smith 28239962606eSBarry Smith /*S 28240f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28250f453b92SJed Brown 28260f453b92SJed Brown Level: developer 28270f453b92SJed Brown 28280f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28290f453b92SJed Brown S*/ 28300f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 283113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28320f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 283313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2834137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2835137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2836137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 283713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 283813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28390f453b92SJed Brown 2840471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2841471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2842471ecdacSJed Brown * possible. */ 284335005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2844d382aafbSBarry Smith 28459de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 28469de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 28479de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 28489de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 28499de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 28509de0f6ecSBarry Smith 2851268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2852fbfcfee5SBarry Smith 28531f817a21SBarry Smith /*@C 28541f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28551f817a21SBarry Smith 28561f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28571f817a21SBarry Smith 28581f817a21SBarry Smith Input Parameters: 28591f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28601f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28611f817a21SBarry Smith 2862850545d0SSatish Balay Level: intermediate 2863850545d0SSatish Balay 28641f817a21SBarry Smith Options Database: 2865063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 28661f817a21SBarry Smith @*/ 2867dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2868dff31646SBarry Smith { 2869dff31646SBarry Smith size_t len; 2870dff31646SBarry Smith char *vstring; 2871dff31646SBarry Smith PetscErrorCode ierr; 2872dff31646SBarry Smith 28731f817a21SBarry Smith PetscFunctionBegin; 28748d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2875dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 287635005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2877dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2878dff31646SBarry Smith if (set) *set = PETSC_TRUE; 28791f817a21SBarry Smith PetscFunctionReturn(0); 2880dff31646SBarry Smith } 2881dff31646SBarry Smith 2882b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2883fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2884fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2885f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2886fe278a28SBarry Smith 2887f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2888f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2889b967cddfSBarry Smith 289004102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2891763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2892dff31646SBarry Smith 289368e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 28945dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2895d382aafbSBarry Smith 2896b2566f29SBarry Smith 2897b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2898b2566f29SBarry Smith /* 2899b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2900b2566f29SBarry Smith */ 29018f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 290277a5e07dSBarry Smith 290377a5e07dSBarry Smith /*MC 290477a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 290577a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 290677a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 290777a5e07dSBarry Smith 290877a5e07dSBarry Smith Collective on MPI_Comm 290977a5e07dSBarry Smith 291077a5e07dSBarry Smith Synopsis: 291177a5e07dSBarry Smith #include <petscsys.h> 291277a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 291377a5e07dSBarry Smith 291477a5e07dSBarry Smith Input Parameters: 291577a5e07dSBarry Smith + indata - pointer to the input data to be reduced 291677a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 291777a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 291877a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 291977a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 292077a5e07dSBarry Smith 292177a5e07dSBarry Smith Output Parameter: 292277a5e07dSBarry Smith . outdata - the reduced values 292377a5e07dSBarry Smith 292477a5e07dSBarry Smith Notes: In optimized mode this directly calls MPI_Allreduce() 292577a5e07dSBarry Smith 292677a5e07dSBarry Smith Level: developer 292777a5e07dSBarry Smith 292877a5e07dSBarry Smith .seealso: MPI_Allreduce() 292977a5e07dSBarry Smith M*/ 2930fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2931b2566f29SBarry Smith #else 2932b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2933b2566f29SBarry Smith #endif 2934b2566f29SBarry Smith 2935d382aafbSBarry Smith #endif 2936