1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 526bd1501SBarry Smith #if !defined(PETSCSYS_H) 626bd1501SBarry Smith #define PETSCSYS_H 73ca90d2dSJacob Faibussowitsch 8d382aafbSBarry Smith /* ========================================================================== */ 9d382aafbSBarry Smith /* 10d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 111c77a0c5SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include that 121c77a0c5SBarry Smith PETSc's makefiles add to the compiler rules. 131c77a0c5SBarry Smith For --prefix installs the directory ${PETSC_ARCH} does not exist and petscconf.h is in the same 141cc8b206SBarry Smith directory as the other PETSc include files. 15d382aafbSBarry Smith */ 162c8e378dSBarry Smith #include <petscconf.h> 171c77a0c5SBarry Smith #include <petscconf_poison.h> 182c8e378dSBarry Smith #include <petscfix.h> 19bde483f2SJacob Faibussowitsch #include <petscmacros.h> 2033bb201bSJacob Faibussowitsch 21ac09b921SBarry Smith /* SUBMANSEC = Sys */ 22ac09b921SBarry Smith 2373fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 2473fca5a0SBarry Smith /* 2573fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2673fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2773fca5a0SBarry Smith */ 28216f1ae6SBarry Smith # if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2973fca5a0SBarry Smith # define _POSIX_C_SOURCE 200112L 3073fca5a0SBarry Smith # endif 31216f1ae6SBarry Smith # if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 3273fca5a0SBarry Smith # define _BSD_SOURCE 3373fca5a0SBarry Smith # endif 3407f00807SSatish Balay # if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 3507f00807SSatish Balay # define _DEFAULT_SOURCE 3607f00807SSatish Balay # endif 37ea0fecefSShri Abhyankar # if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 38ea0fecefSShri Abhyankar # define _GNU_SOURCE 39ea0fecefSShri Abhyankar # endif 4073fca5a0SBarry Smith #endif 4173fca5a0SBarry Smith 42df4397b0SStefano Zampini #include <petscsystypes.h> 43df4397b0SStefano Zampini 44d382aafbSBarry Smith /* ========================================================================== */ 45d382aafbSBarry Smith 46d382aafbSBarry Smith /* 47d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 48d382aafbSBarry Smith 49d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 50d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 51d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 52d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 53d382aafbSBarry Smith mpicxx.h directly in their code 54d382aafbSBarry Smith */ 55fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 56d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 57fa9e63e2SJed Brown #endif 58fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 59d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 60fa9e63e2SJed Brown #endif 61e771154cSJed Brown #if defined(PETSC_HAVE_MPIUNI) 62e771154cSJed Brown # include <petsc/mpiuni/mpi.h> 63e771154cSJed Brown #else 642c8e378dSBarry Smith # include <mpi.h> 65e771154cSJed Brown #endif 6665013866SBarry Smith 67d382aafbSBarry Smith /* 68a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 69a7886beaSBarry Smith This usually happens because 70a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 71a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 72a7886beaSBarry Smith */ 73a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 74c9b973beSBarry Smith # if !defined(MPIUNI_H) 75a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 76a7886beaSBarry Smith # endif 7741f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 7841f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 7941f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 8041f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 8141f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 8241f4af4cSSatish Balay # endif 8341f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 8441f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 8541f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 8641f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 8741f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 8841f4af4cSSatish Balay # endif 89a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 9041f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 91a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 921c284764SMin RK # elif (MPICH_NUMVERSION/100000000 != PETSC_HAVE_MPICH_NUMVERSION/100000000) || (MPICH_NUMVERSION/100000 < PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION/100000 == PETSC_HAVE_MPICH_NUMVERSION/100000 && MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 93a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 94a7886beaSBarry Smith # endif 95a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 96a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 97a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 981c284764SMin RK # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION < PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_MINOR_VERSION == PETSC_HAVE_OMPI_MINOR_VERSION && OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 99c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 100a7886beaSBarry Smith # endif 101c93fae50SJacob Faibussowitsch # define PETSC_MPI_COMM_FMT "p" 102c93fae50SJacob Faibussowitsch # define PETSC_MPI_WIN_FMT "p" 103d97fd468SStefano Zampini #elif defined(PETSC_HAVE_MSMPI_VERSION) 104d97fd468SStefano Zampini # if !defined(MSMPI_VER) 105d97fd468SStefano Zampini # error "PETSc was configured with MSMPI but now appears to be compiling using a non-MSMPI mpi.h" 106d97fd468SStefano Zampini # elif (MSMPI_VER != PETSC_HAVE_MSMPI_VERSION) 107d97fd468SStefano Zampini # error "PETSc was configured with one MSMPI mpi.h version but now appears to be compiling using a different MSMPI mpi.h version" 108d97fd468SStefano Zampini # endif 109d97fd468SStefano Zampini #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) || defined(MSMPI_VER) 110d97fd468SStefano Zampini # error "PETSc was configured with undetermined MPI - but now appears to be compiling using any of OpenMPI, MS-MPI or a MPICH variant" 111a7886beaSBarry Smith #endif 112a7886beaSBarry Smith 113c93fae50SJacob Faibussowitsch /* Format specifier for printing MPI_Comm (most implementations use 'int' as type) */ 114c93fae50SJacob Faibussowitsch #if !defined(PETSC_MPI_COMM_FMT) 115c93fae50SJacob Faibussowitsch # define PETSC_MPI_COMM_FMT "d" 116c93fae50SJacob Faibussowitsch #endif 117c93fae50SJacob Faibussowitsch 118c93fae50SJacob Faibussowitsch #if !defined(PETSC_MPI_WIN_FMT) 119c93fae50SJacob Faibussowitsch # define PETSC_MPI_WIN_FMT "d" 120c93fae50SJacob Faibussowitsch #endif 121c93fae50SJacob Faibussowitsch 122a7886beaSBarry Smith /* 1232981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 124d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 125d382aafbSBarry Smith */ 126d382aafbSBarry Smith #include <stdio.h> 127d382aafbSBarry Smith 128d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 129d382aafbSBarry Smith #if !defined(MPIAPI) 130d382aafbSBarry Smith #define MPIAPI 131d382aafbSBarry Smith #endif 132d382aafbSBarry Smith 1331cc8b206SBarry Smith /* 1341cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1351cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1361cc8b206SBarry Smith does not match the actual type of the argument being passed in 1371cc8b206SBarry Smith */ 138c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 139894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 140894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1418ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1428ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 143894dd566SJed Brown # endif 144894dd566SJed Brown #endif 145894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 146894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1478ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1488ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 149894dd566SJed Brown #endif 150b3506946SBarry Smith 1515a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 152df4397b0SStefano Zampini PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 153e28ce29aSPatrick Sanan 154e28ce29aSPatrick Sanan /*MC 155*87497f52SBarry Smith MPIU_INT - Portable MPI datatype corresponding to `PetscInt` independent of the precision of `PetscInt` 156e28ce29aSPatrick Sanan 157e28ce29aSPatrick Sanan Notes: 158*87497f52SBarry Smith In MPI calls that require an MPI datatype that matches a `PetscInt` or array of `PetscInt` values, pass this value. 159e28ce29aSPatrick Sanan 160e28ce29aSPatrick Sanan Level: beginner 161e28ce29aSPatrick Sanan 162db781477SPatrick Sanan .seealso: `PetscReal`, `PetscScalar`, `PetscComplex`, `PetscInt`, `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_COMPLEX` 163e28ce29aSPatrick Sanan M*/ 164e28ce29aSPatrick Sanan 1657cdaf61dSJed Brown PETSC_EXTERN MPI_Datatype MPIU_FORTRANADDR; 166b7b8f77aSBarry Smith 167d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 168bd84f1cfSSatish Balay # define MPIU_INT MPIU_INT64 169a05e1a72SSatish Balay # define PetscInt_FMT PetscInt64_FMT 170d382aafbSBarry Smith #else 171d382aafbSBarry Smith # define MPIU_INT MPI_INT 172a05e1a72SSatish Balay # define PetscInt_FMT "d" 173d382aafbSBarry Smith #endif 174d382aafbSBarry Smith 175503cfb0cSBarry Smith /* 176503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 177503cfb0cSBarry Smith */ 178e316c87fSJed Brown PETSC_EXTERN MPI_Datatype MPIU_SIZE_T; 179d382aafbSBarry Smith 180d382aafbSBarry Smith /* 181d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 182d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 183d382aafbSBarry Smith */ 184014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 185d382aafbSBarry Smith 186d382aafbSBarry Smith /* 187d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 188d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 189d382aafbSBarry Smith */ 190014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 191d382aafbSBarry Smith 192c8b9133aSSatish Balay /* PetscPragmaSIMD - from CeedPragmaSIMD */ 193c8b9133aSSatish Balay 1945c993f7fSStefano Zampini #if defined(__NEC__) 1955c993f7fSStefano Zampini # define PetscPragmaSIMD _Pragma("_NEC ivdep") 1965c993f7fSStefano Zampini #elif defined(__INTEL_COMPILER) && !defined(_WIN32) 197c8b9133aSSatish Balay # define PetscPragmaSIMD _Pragma("vector") 1981dba8834SJose E. Roman #elif defined(__GNUC__) && __GNUC__ >= 5 && !defined(__PGI) 199c8b9133aSSatish Balay # define PetscPragmaSIMD _Pragma("GCC ivdep") 200e5518150SSatish Balay #elif defined(_OPENMP) && _OPENMP >= 201307 201e5518150SSatish Balay # if defined(_MSC_VER) 202160a5775SAli Reza Khaz'ali # define PetscPragmaSIMD __pragma(omp simd) 203e5518150SSatish Balay # else 204e5518150SSatish Balay # define PetscPragmaSIMD _Pragma("omp simd") 205e5518150SSatish Balay # endif 206c8b9133aSSatish Balay #elif defined(PETSC_HAVE_CRAY_VECTOR) 207c8b9133aSSatish Balay # define PetscPragmaSIMD _Pragma("_CRI ivdep") 208c8b9133aSSatish Balay #else 209c8b9133aSSatish Balay # define PetscPragmaSIMD 210c8b9133aSSatish Balay #endif 211c8b9133aSSatish Balay 212d382aafbSBarry Smith /* 213d382aafbSBarry Smith Declare extern C stuff after including external header files 214d382aafbSBarry Smith */ 215d382aafbSBarry Smith 2166a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 21770b3c8c7SBarry Smith 2186edef35eSSatish Balay PETSC_EXTERN PetscBool PETSC_RUNNING_ON_VALGRIND; 2198b49ba18SBarry Smith /* 220390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 2218b49ba18SBarry Smith */ 2228b49ba18SBarry Smith #include <petscmath.h> 2238b49ba18SBarry Smith 2246a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 225d382aafbSBarry Smith 226d382aafbSBarry Smith /*MC 2270298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 228d382aafbSBarry Smith 229d382aafbSBarry Smith Level: beginner 230d382aafbSBarry Smith 231e28ce29aSPatrick Sanan Note: 232*87497f52SBarry Smith Accepted by many PETSc functions to not set a parameter and instead use some default 233d382aafbSBarry Smith 234*87497f52SBarry Smith Fortran Note: 235*87497f52SBarry Smith This macro does not exist in Fortran; you must use `PETSC_NULL_INTEGER`, `PETSC_NULL_DOUBLE_PRECISION` etc 236d382aafbSBarry Smith 237db781477SPatrick Sanan .seealso: `PETSC_DECIDE`, `PETSC_DEFAULT`, `PETSC_DETERMINE` 238d382aafbSBarry Smith 239d382aafbSBarry Smith M*/ 2400298fd71SBarry Smith #define PETSC_IGNORE NULL 241d382aafbSBarry Smith 242c528d872SBarry Smith /* This is deprecated */ 243c528d872SBarry Smith #define PETSC_NULL NULL 244c528d872SBarry Smith 245d382aafbSBarry Smith /*MC 246557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 247557d4da8SBarry Smith where you wish PETSc to use the default. 248557d4da8SBarry Smith 249557d4da8SBarry Smith Level: beginner 250557d4da8SBarry Smith 251db781477SPatrick Sanan .seealso: `PETSC_DEFAULT`, `PETSC_IGNORE`, `PETSC_DETERMINE` 252557d4da8SBarry Smith 253557d4da8SBarry Smith M*/ 254557d4da8SBarry Smith #define PETSC_DECIDE -1 255557d4da8SBarry Smith 256557d4da8SBarry Smith /*MC 257d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 258d382aafbSBarry Smith where you wish PETSc to compute the required value. 259d382aafbSBarry Smith 260d382aafbSBarry Smith Level: beginner 261d382aafbSBarry Smith 262e28ce29aSPatrick Sanan Developer Note: 263*87497f52SBarry Smith I would like to use const `PetscInt` `PETSC_DETERMINE` = `PETSC_DECIDE`; but for 264*87497f52SBarry Smith some reason this is not allowed by the standard even though `PETSC_DECIDE` is a constant value. 265557d4da8SBarry Smith 266db781477SPatrick Sanan .seealso: `PETSC_DECIDE`, `PETSC_DEFAULT`, `PETSC_IGNORE`, `VecSetSizes()` 267d382aafbSBarry Smith 268d382aafbSBarry Smith M*/ 269d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 270d382aafbSBarry Smith 271d382aafbSBarry Smith /*MC 272557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 273557d4da8SBarry Smith where you wish PETSc to use the default. 274557d4da8SBarry Smith 275557d4da8SBarry Smith Level: beginner 276557d4da8SBarry Smith 277*87497f52SBarry Smith Fortran Note: 278*87497f52SBarry Smith You need to use `PETSC_DEFAULT_INTEGER` or `PETSC_DEFAULT_REAL`. 279557d4da8SBarry Smith 280db781477SPatrick Sanan .seealso: `PETSC_DECIDE`, `PETSC_IGNORE`, `PETSC_DETERMINE` 281557d4da8SBarry Smith 282557d4da8SBarry Smith M*/ 283557d4da8SBarry Smith #define PETSC_DEFAULT -2 284557d4da8SBarry Smith 285557d4da8SBarry Smith /*MC 286*87497f52SBarry Smith PETSC_COMM_WORLD - the equivalent of the `MPI_COMM_WORLD` communicator which represents 287ea8fe74dSBarry Smith all the processes that PETSc knows about. 288d382aafbSBarry Smith 289d382aafbSBarry Smith Level: beginner 290d382aafbSBarry Smith 291e28ce29aSPatrick Sanan Notes: 292*87497f52SBarry Smith By default `PETSC_COMM_WORLD` and `MPI_COMM_WORLD` are identical unless you wish to 293*87497f52SBarry Smith run PETSc on ONLY a subset of `MPI_COMM_WORLD`. In that case create your new (smaller) 294*87497f52SBarry Smith communicator, call it, say comm, and set `PETSC_COMM_WORLD` = comm BEFORE calling 295*87497f52SBarry Smith PetscInitialize(), but after `MPI_Init()` has been called. 296a990b902SBarry Smith 297*87497f52SBarry Smith The value of `PETSC_COMM_WORLD` should never be USED/accessed before `PetscInitialize()` 298a990b902SBarry Smith is called because it may not have a valid value yet. 299d382aafbSBarry Smith 300db781477SPatrick Sanan .seealso: `PETSC_COMM_SELF` 301d382aafbSBarry Smith 302d382aafbSBarry Smith M*/ 303014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 304d382aafbSBarry Smith 305d382aafbSBarry Smith /*MC 306*87497f52SBarry Smith PETSC_COMM_SELF - This is always `MPI_COMM_SELF` 307d382aafbSBarry Smith 308d382aafbSBarry Smith Level: beginner 309d382aafbSBarry Smith 310e28ce29aSPatrick Sanan Notes: 311e28ce29aSPatrick Sanan Do not USE/access or set this variable before PetscInitialize() has been called. 312a990b902SBarry Smith 313db781477SPatrick Sanan .seealso: `PETSC_COMM_WORLD` 314d382aafbSBarry Smith 315d382aafbSBarry Smith M*/ 316d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 317d382aafbSBarry Smith 3186de5d289SStefano Zampini /*MC 3196de5d289SStefano Zampini PETSC_MPI_THREAD_REQUIRED - the required threading support used if PETSc initializes 320*87497f52SBarry Smith MPI with `MPI_Init_thread()`. 3216de5d289SStefano Zampini 3226de5d289SStefano Zampini Level: beginner 3236de5d289SStefano Zampini 3246de5d289SStefano Zampini Notes: 325*87497f52SBarry Smith By default `PETSC_MPI_THREAD_REQUIRED` equals `MPI_THREAD_FUNNELED`. 3266de5d289SStefano Zampini 327db781477SPatrick Sanan .seealso: `PetscInitialize()` 3286de5d289SStefano Zampini 3296de5d289SStefano Zampini M*/ 3306de5d289SStefano Zampini PETSC_EXTERN PetscMPIInt PETSC_MPI_THREAD_REQUIRED; 3316de5d289SStefano Zampini 332d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 3338ad20175SVaclav Hapla PETSC_EXTERN PetscBool PetscErrorHandlingInitialized; 334014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 335014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 3364cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 337d382aafbSBarry Smith 338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 339014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 34157f21012SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommGetComm(MPI_Comm,MPI_Comm*); 34257f21012SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommRestoreComm(MPI_Comm,MPI_Comm*); 343d382aafbSBarry Smith 34459e55d94SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 34559e55d94SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscKokkosInitializeCheck(void); /* Initialize Kokkos if not yet. */ 34659e55d94SJunchao Zhang #endif 34759e55d94SJunchao Zhang 34871438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 34971438e86SJunchao Zhang PETSC_EXTERN PetscBool PetscBeganNvshmem; 35071438e86SJunchao Zhang PETSC_EXTERN PetscBool PetscNvshmemInitialized; 35171438e86SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscNvshmemFinalize(void); 35271438e86SJunchao Zhang #endif 35371438e86SJunchao Zhang 354540e20f2SPierre Jolivet #if defined(PETSC_HAVE_ELEMENTAL) 355540e20f2SPierre Jolivet PETSC_EXTERN PetscErrorCode PetscElementalInitializePackage(void); 356540e20f2SPierre Jolivet PETSC_EXTERN PetscErrorCode PetscElementalInitialized(PetscBool*); 357540e20f2SPierre Jolivet PETSC_EXTERN PetscErrorCode PetscElementalFinalizePackage(void); 358540e20f2SPierre Jolivet #endif 359540e20f2SPierre Jolivet 360d382aafbSBarry Smith /*MC 361*87497f52SBarry Smith PetscMalloc - Allocates memory, One should use `PetscNew()`, `PetscMalloc1()` or `PetscCalloc1()` usually instead of this 362d382aafbSBarry Smith 363eca87e8dSBarry Smith Synopsis: 364aaa7dc30SBarry Smith #include <petscsys.h> 365eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 366eca87e8dSBarry Smith 367eca87e8dSBarry Smith Not Collective 368eca87e8dSBarry Smith 369d382aafbSBarry Smith Input Parameter: 370d382aafbSBarry Smith . m - number of bytes to allocate 371d382aafbSBarry Smith 372d382aafbSBarry Smith Output Parameter: 373d382aafbSBarry Smith . result - memory allocated 374d382aafbSBarry Smith 375d382aafbSBarry Smith Level: beginner 376d382aafbSBarry Smith 37749d7da52SJed Brown Notes: 37849d7da52SJed Brown Memory is always allocated at least double aligned 379d382aafbSBarry Smith 380*87497f52SBarry Smith It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to `PetscFree()`. 381d382aafbSBarry Smith 382db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()` 383d382aafbSBarry Smith 384d382aafbSBarry Smith M*/ 385071fcb05SBarry Smith #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 386d382aafbSBarry Smith 387d382aafbSBarry Smith /*MC 3883221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 3893221ece2SMatthew G. Knepley 3903221ece2SMatthew G. Knepley Synopsis: 3913221ece2SMatthew G. Knepley #include <petscsys.h> 3923221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 3933221ece2SMatthew G. Knepley 3943221ece2SMatthew G. Knepley Not Collective 3953221ece2SMatthew G. Knepley 3963221ece2SMatthew G. Knepley Input Parameters: 3973221ece2SMatthew G. Knepley + m - number of bytes to allocate 39892f119d6SBarry Smith - result - previous memory 3993221ece2SMatthew G. Knepley 4003221ece2SMatthew G. Knepley Output Parameter: 4013221ece2SMatthew G. Knepley . result - new memory allocated 4023221ece2SMatthew G. Knepley 4033221ece2SMatthew G. Knepley Level: developer 4043221ece2SMatthew G. Knepley 4053221ece2SMatthew G. Knepley Notes: 4063221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 4073221ece2SMatthew G. Knepley 408db781477SPatrick Sanan .seealso: `PetscMalloc()`, `PetscFree()`, `PetscNew()` 4093221ece2SMatthew G. Knepley 4103221ece2SMatthew G. Knepley M*/ 4113221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 4123221ece2SMatthew G. Knepley 4133221ece2SMatthew G. Knepley /*MC 414*87497f52SBarry Smith PetscAddrAlign - Rounds up an address to `PETSC_MEMALIGN` alignment 415d382aafbSBarry Smith 416d382aafbSBarry Smith Synopsis: 417aaa7dc30SBarry Smith #include <petscsys.h> 418d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 419d382aafbSBarry Smith 420eca87e8dSBarry Smith Not Collective 421eca87e8dSBarry Smith 422eca87e8dSBarry Smith Input Parameters: 423eca87e8dSBarry Smith . addr - address to align (any pointer type) 424eca87e8dSBarry Smith 425d382aafbSBarry Smith Level: developer 426d382aafbSBarry Smith 427db781477SPatrick Sanan .seealso: `PetscMallocAlign()` 428d382aafbSBarry Smith 429d382aafbSBarry Smith M*/ 430d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 431d382aafbSBarry Smith 432d382aafbSBarry Smith /*MC 433*87497f52SBarry Smith PetscCalloc - Allocates a cleared (zeroed) memory region aligned to `PETSC_MEMALIGN` 4348f51dc47SJunchao Zhang 4358f51dc47SJunchao Zhang Synopsis: 4368f51dc47SJunchao Zhang #include <petscsys.h> 4378f51dc47SJunchao Zhang PetscErrorCode PetscCalloc(size_t m,void **result) 4388f51dc47SJunchao Zhang 4398f51dc47SJunchao Zhang Not Collective 4408f51dc47SJunchao Zhang 4418f51dc47SJunchao Zhang Input Parameter: 4428f51dc47SJunchao Zhang . m - number of bytes to allocate 4438f51dc47SJunchao Zhang 4448f51dc47SJunchao Zhang Output Parameter: 4458f51dc47SJunchao Zhang . result - memory allocated 4468f51dc47SJunchao Zhang 4478f51dc47SJunchao Zhang Level: beginner 4488f51dc47SJunchao Zhang 4498f51dc47SJunchao Zhang Notes: 4508f51dc47SJunchao Zhang Memory is always allocated at least double aligned. This macro is useful in allocating memory pointed by void pointers 4518f51dc47SJunchao Zhang 4528f51dc47SJunchao Zhang It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 4538f51dc47SJunchao Zhang 454db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()` 4558f51dc47SJunchao Zhang 4568f51dc47SJunchao Zhang M*/ 45766122d6dSBarry Smith #define PetscCalloc(m,result) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m),(result)) 4588f51dc47SJunchao Zhang 4598f51dc47SJunchao Zhang /*MC 460*87497f52SBarry Smith PetscMalloc1 - Allocates an array of memory aligned to `PETSC_MEMALIGN` 461d382aafbSBarry Smith 462eca87e8dSBarry Smith Synopsis: 463aaa7dc30SBarry Smith #include <petscsys.h> 464785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 465785e854fSJed Brown 466785e854fSJed Brown Not Collective 467785e854fSJed Brown 468785e854fSJed Brown Input Parameter: 469390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 470785e854fSJed Brown 471785e854fSJed Brown Output Parameter: 4721fe1b817SJunchao Zhang . r1 - memory allocated 473785e854fSJed Brown 474e28ce29aSPatrick Sanan Note: 475e28ce29aSPatrick Sanan This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 476*87497f52SBarry Smith multiply the number of elements requested by the `sizeof()` the type. For example use 477390e1bf2SBarry Smith $ PetscInt *id; 478390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 479390e1bf2SBarry Smith not 480390e1bf2SBarry Smith $ PetscInt *id; 481390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 482390e1bf2SBarry Smith 483*87497f52SBarry Smith Does not zero the memory allocated, use `PetscCalloc1()` to obtain memory that has been zeroed. 484390e1bf2SBarry Smith 485390e1bf2SBarry Smith Level: beginner 486785e854fSJed Brown 487db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscCalloc1()`, `PetscMalloc2()` 488785e854fSJed Brown 489785e854fSJed Brown M*/ 49066122d6dSBarry Smith #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1)) 491785e854fSJed Brown 492785e854fSJed Brown /*MC 493*87497f52SBarry Smith PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to `PETSC_MEMALIGN` 4941795a4d1SJed Brown 4951795a4d1SJed Brown Synopsis: 496aaa7dc30SBarry Smith #include <petscsys.h> 4971795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 4981795a4d1SJed Brown 4991795a4d1SJed Brown Not Collective 5001795a4d1SJed Brown 5011795a4d1SJed Brown Input Parameter: 5021795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 5031795a4d1SJed Brown 5041795a4d1SJed Brown Output Parameter: 5051fe1b817SJunchao Zhang . r1 - memory allocated 5061795a4d1SJed Brown 507e28ce29aSPatrick Sanan Notes: 508*87497f52SBarry Smith See `PetsMalloc1()` for more details on usage. 509390e1bf2SBarry Smith 510390e1bf2SBarry Smith Level: beginner 5111795a4d1SJed Brown 512db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc1()`, `PetscCalloc2()` 5131795a4d1SJed Brown 5141795a4d1SJed Brown M*/ 51566122d6dSBarry Smith #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1)) 5161795a4d1SJed Brown 5171795a4d1SJed Brown /*MC 518*87497f52SBarry Smith PetscMalloc2 - Allocates 2 arrays of memory both aligned to `PETSC_MEMALIGN` 519d382aafbSBarry Smith 520eca87e8dSBarry Smith Synopsis: 521aaa7dc30SBarry Smith #include <petscsys.h> 522dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 523eca87e8dSBarry Smith 524eca87e8dSBarry Smith Not Collective 525eca87e8dSBarry Smith 526d8d19677SJose E. Roman Input Parameters: 527d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 528dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 529d382aafbSBarry Smith 530d8d19677SJose E. Roman Output Parameters: 531d382aafbSBarry Smith + r1 - memory allocated in first chunk 532d382aafbSBarry Smith - r2 - memory allocated in second chunk 533d382aafbSBarry Smith 534d382aafbSBarry Smith Level: developer 535d382aafbSBarry Smith 536db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc1()`, `PetscCalloc2()` 537d382aafbSBarry Smith 538d382aafbSBarry Smith M*/ 53966122d6dSBarry Smith #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2)) 540d382aafbSBarry Smith 541d382aafbSBarry Smith /*MC 542*87497f52SBarry Smith PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to `PETSC_MEMALIGN` 543d382aafbSBarry Smith 544eca87e8dSBarry Smith Synopsis: 545aaa7dc30SBarry Smith #include <petscsys.h> 5461795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 547eca87e8dSBarry Smith 548eca87e8dSBarry Smith Not Collective 549eca87e8dSBarry Smith 550d8d19677SJose E. Roman Input Parameters: 551d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 5521795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 5531795a4d1SJed Brown 554d8d19677SJose E. Roman Output Parameters: 5551795a4d1SJed Brown + r1 - memory allocated in first chunk 5561795a4d1SJed Brown - r2 - memory allocated in second chunk 5571795a4d1SJed Brown 5581795a4d1SJed Brown Level: developer 5591795a4d1SJed Brown 560db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscCalloc1()`, `PetscMalloc2()` 5611795a4d1SJed Brown 5621795a4d1SJed Brown M*/ 56366122d6dSBarry Smith #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2)) 5641795a4d1SJed Brown 5651795a4d1SJed Brown /*MC 566*87497f52SBarry Smith PetscMalloc3 - Allocates 3 arrays of memory, all aligned to `PETSC_MEMALIGN` 567d382aafbSBarry Smith 568d382aafbSBarry Smith Synopsis: 569aaa7dc30SBarry Smith #include <petscsys.h> 570dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 571d382aafbSBarry Smith 572d382aafbSBarry Smith Not Collective 573d382aafbSBarry Smith 574d8d19677SJose E. Roman Input Parameters: 575d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 576d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 577dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 578d382aafbSBarry Smith 579d8d19677SJose E. Roman Output Parameters: 580d382aafbSBarry Smith + r1 - memory allocated in first chunk 581d382aafbSBarry Smith . r2 - memory allocated in second chunk 582d382aafbSBarry Smith - r3 - memory allocated in third chunk 583d382aafbSBarry Smith 584d382aafbSBarry Smith Level: developer 585d382aafbSBarry Smith 586db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscCalloc3()`, `PetscFree3()` 587d382aafbSBarry Smith 588d382aafbSBarry Smith M*/ 58966122d6dSBarry Smith #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3)) 590d382aafbSBarry Smith 591d382aafbSBarry Smith /*MC 592*87497f52SBarry Smith PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to `PETSC_MEMALIGN` 593d382aafbSBarry Smith 594eca87e8dSBarry Smith Synopsis: 595aaa7dc30SBarry Smith #include <petscsys.h> 5961795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 597eca87e8dSBarry Smith 598eca87e8dSBarry Smith Not Collective 599eca87e8dSBarry Smith 600d8d19677SJose E. Roman Input Parameters: 601d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 602d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 6031795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 6041795a4d1SJed Brown 605d8d19677SJose E. Roman Output Parameters: 6061795a4d1SJed Brown + r1 - memory allocated in first chunk 6071795a4d1SJed Brown . r2 - memory allocated in second chunk 6081795a4d1SJed Brown - r3 - memory allocated in third chunk 6091795a4d1SJed Brown 6101795a4d1SJed Brown Level: developer 6111795a4d1SJed Brown 612db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscCalloc2()`, `PetscMalloc3()`, `PetscFree3()` 6131795a4d1SJed Brown 6141795a4d1SJed Brown M*/ 61566122d6dSBarry Smith #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3)) 6161795a4d1SJed Brown 6171795a4d1SJed Brown /*MC 618*87497f52SBarry Smith PetscMalloc4 - Allocates 4 arrays of memory, all aligned to `PETSC_MEMALIGN` 619d382aafbSBarry Smith 620d382aafbSBarry Smith Synopsis: 621aaa7dc30SBarry Smith #include <petscsys.h> 622dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 623d382aafbSBarry Smith 624d382aafbSBarry Smith Not Collective 625d382aafbSBarry Smith 626d8d19677SJose E. Roman Input Parameters: 627d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 628d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 629d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 630dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 631d382aafbSBarry Smith 632d8d19677SJose E. Roman Output Parameters: 633d382aafbSBarry Smith + r1 - memory allocated in first chunk 634d382aafbSBarry Smith . r2 - memory allocated in second chunk 635d382aafbSBarry Smith . r3 - memory allocated in third chunk 636d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 637d382aafbSBarry Smith 638d382aafbSBarry Smith Level: developer 639d382aafbSBarry Smith 640db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscCalloc4()`, `PetscFree4()` 641d382aafbSBarry Smith 642d382aafbSBarry Smith M*/ 64366122d6dSBarry Smith #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4)) 644d382aafbSBarry Smith 645d382aafbSBarry Smith /*MC 646*87497f52SBarry Smith PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to `PETSC_MEMALIGN` 647d382aafbSBarry Smith 648eca87e8dSBarry Smith Synopsis: 649aaa7dc30SBarry Smith #include <petscsys.h> 6501795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 651eca87e8dSBarry Smith 652eca87e8dSBarry Smith Not Collective 653eca87e8dSBarry Smith 654e28ce29aSPatrick Sanan Input Parameters: 655d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 656d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 657d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 6581795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 6591795a4d1SJed Brown 660e28ce29aSPatrick Sanan Output Parameters: 6611795a4d1SJed Brown + r1 - memory allocated in first chunk 6621795a4d1SJed Brown . r2 - memory allocated in second chunk 6631795a4d1SJed Brown . r3 - memory allocated in third chunk 6641795a4d1SJed Brown - r4 - memory allocated in fourth chunk 6651795a4d1SJed Brown 6661795a4d1SJed Brown Level: developer 6671795a4d1SJed Brown 668db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscCalloc4()`, `PetscFree4()` 6691795a4d1SJed Brown 6701795a4d1SJed Brown M*/ 67166122d6dSBarry Smith #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4)) 6721795a4d1SJed Brown 6731795a4d1SJed Brown /*MC 674*87497f52SBarry Smith PetscMalloc5 - Allocates 5 arrays of memory, all aligned to `PETSC_MEMALIGN` 675d382aafbSBarry Smith 676d382aafbSBarry Smith Synopsis: 677aaa7dc30SBarry Smith #include <petscsys.h> 678dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 679d382aafbSBarry Smith 680d382aafbSBarry Smith Not Collective 681d382aafbSBarry Smith 682e28ce29aSPatrick Sanan Input Parameters: 683d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 684d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 685d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 686d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 687dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 688d382aafbSBarry Smith 689e28ce29aSPatrick Sanan Output Parameters: 690d382aafbSBarry Smith + r1 - memory allocated in first chunk 691d382aafbSBarry Smith . r2 - memory allocated in second chunk 692d382aafbSBarry Smith . r3 - memory allocated in third chunk 693d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 694d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 695d382aafbSBarry Smith 696d382aafbSBarry Smith Level: developer 697d382aafbSBarry Smith 698db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscCalloc5()`, `PetscFree5()` 699d382aafbSBarry Smith 700d382aafbSBarry Smith M*/ 70166122d6dSBarry Smith #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4),(size_t)((size_t)m5)*sizeof(**(r5)),(r5)) 702d382aafbSBarry Smith 703d382aafbSBarry Smith /*MC 704*87497f52SBarry Smith PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to `PETSC_MEMALIGN` 705d382aafbSBarry Smith 706eca87e8dSBarry Smith Synopsis: 707aaa7dc30SBarry Smith #include <petscsys.h> 7081795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 709eca87e8dSBarry Smith 710eca87e8dSBarry Smith Not Collective 711eca87e8dSBarry Smith 712e28ce29aSPatrick Sanan Input Parameters: 713d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 714d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 715d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 716d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 7171795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 7181795a4d1SJed Brown 719e28ce29aSPatrick Sanan Output Parameters: 7201795a4d1SJed Brown + r1 - memory allocated in first chunk 7211795a4d1SJed Brown . r2 - memory allocated in second chunk 7221795a4d1SJed Brown . r3 - memory allocated in third chunk 7231795a4d1SJed Brown . r4 - memory allocated in fourth chunk 7241795a4d1SJed Brown - r5 - memory allocated in fifth chunk 7251795a4d1SJed Brown 7261795a4d1SJed Brown Level: developer 7271795a4d1SJed Brown 728db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc5()`, `PetscFree5()` 7291795a4d1SJed Brown 7301795a4d1SJed Brown M*/ 73166122d6dSBarry Smith #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4),(size_t)((size_t)m5)*sizeof(**(r5)),(r5)) 732d382aafbSBarry Smith 733d382aafbSBarry Smith /*MC 734*87497f52SBarry Smith PetscMalloc6 - Allocates 6 arrays of memory, all aligned to `PETSC_MEMALIGN` 735d382aafbSBarry Smith 736d382aafbSBarry Smith Synopsis: 737aaa7dc30SBarry Smith #include <petscsys.h> 738dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 739d382aafbSBarry Smith 740d382aafbSBarry Smith Not Collective 741d382aafbSBarry Smith 742e28ce29aSPatrick Sanan Input Parameters: 743d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 744d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 745d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 746d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 747d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 748dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 749d382aafbSBarry Smith 750e28ce29aSPatrick Sanan Output Parameteasr: 751d382aafbSBarry Smith + r1 - memory allocated in first chunk 752d382aafbSBarry Smith . r2 - memory allocated in second chunk 753d382aafbSBarry Smith . r3 - memory allocated in third chunk 754d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 755d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 756d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 757d382aafbSBarry Smith 758d382aafbSBarry Smith Level: developer 759d382aafbSBarry Smith 760db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscCalloc6()`, `PetscFree3()`, `PetscFree4()`, `PetscFree5()`, `PetscFree6()` 761d382aafbSBarry Smith 762d382aafbSBarry Smith M*/ 76366122d6dSBarry Smith #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4),(size_t)((size_t)m5)*sizeof(**(r5)),(r5),(size_t)((size_t)m6)*sizeof(**(r6)),(r6)) 764d382aafbSBarry Smith 765d382aafbSBarry Smith /*MC 766*87497f52SBarry Smith PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to `PETSC_MEMALIGN` 767d382aafbSBarry Smith 768eca87e8dSBarry Smith Synopsis: 769aaa7dc30SBarry Smith #include <petscsys.h> 7701795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 771eca87e8dSBarry Smith 772eca87e8dSBarry Smith Not Collective 773eca87e8dSBarry Smith 774e28ce29aSPatrick Sanan Input Parameters: 775d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 776d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 777d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 778d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 779d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 7801795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 7811795a4d1SJed Brown 782e28ce29aSPatrick Sanan Output Parameters: 7831795a4d1SJed Brown + r1 - memory allocated in first chunk 7841795a4d1SJed Brown . r2 - memory allocated in second chunk 7851795a4d1SJed Brown . r3 - memory allocated in third chunk 7861795a4d1SJed Brown . r4 - memory allocated in fourth chunk 7871795a4d1SJed Brown . r5 - memory allocated in fifth chunk 7881795a4d1SJed Brown - r6 - memory allocated in sixth chunk 7891795a4d1SJed Brown 7901795a4d1SJed Brown Level: developer 7911795a4d1SJed Brown 792db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscMalloc6()`, `PetscFree6()` 7931795a4d1SJed Brown 7941795a4d1SJed Brown M*/ 79566122d6dSBarry Smith #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4),(size_t)((size_t)m5)*sizeof(**(r5)),(r5),(size_t)((size_t)m6)*sizeof(**(r6)),(r6)) 7961795a4d1SJed Brown 7971795a4d1SJed Brown /*MC 798*87497f52SBarry Smith PetscMalloc7 - Allocates 7 arrays of memory, all aligned to `PETSC_MEMALIGN` 799d382aafbSBarry Smith 800d382aafbSBarry Smith Synopsis: 801aaa7dc30SBarry Smith #include <petscsys.h> 802dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 803d382aafbSBarry Smith 804d382aafbSBarry Smith Not Collective 805d382aafbSBarry Smith 806e28ce29aSPatrick Sanan Input Parameters: 807d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 808d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 809d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 810d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 811d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 812d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 813dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 814d382aafbSBarry Smith 815e28ce29aSPatrick Sanan Output Parameters: 816d382aafbSBarry Smith + r1 - memory allocated in first chunk 817d382aafbSBarry Smith . r2 - memory allocated in second chunk 818d382aafbSBarry Smith . r3 - memory allocated in third chunk 819d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 820d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 821d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 822eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 823d382aafbSBarry Smith 824d382aafbSBarry Smith Level: developer 825d382aafbSBarry Smith 826db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscCalloc7()`, `PetscFree7()` 827d382aafbSBarry Smith 828d382aafbSBarry Smith M*/ 82966122d6dSBarry Smith #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4),(size_t)((size_t)m5)*sizeof(**(r5)),(r5),(size_t)((size_t)m6)*sizeof(**(r6)),(r6),(size_t)((size_t)m7)*sizeof(**(r7)),(r7)) 830d382aafbSBarry Smith 831d382aafbSBarry Smith /*MC 832*87497f52SBarry Smith PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to `PETSC_MEMALIGN` 8331795a4d1SJed Brown 8341795a4d1SJed Brown Synopsis: 835aaa7dc30SBarry Smith #include <petscsys.h> 8361795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 8371795a4d1SJed Brown 8381795a4d1SJed Brown Not Collective 8391795a4d1SJed Brown 840e28ce29aSPatrick Sanan Input Parameters: 8411795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 8421795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 8431795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 8441795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 8451795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 8461795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 8471795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 8481795a4d1SJed Brown 849e28ce29aSPatrick Sanan Output Parameters: 8501795a4d1SJed Brown + r1 - memory allocated in first chunk 8511795a4d1SJed Brown . r2 - memory allocated in second chunk 8521795a4d1SJed Brown . r3 - memory allocated in third chunk 8531795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8541795a4d1SJed Brown . r5 - memory allocated in fifth chunk 8551795a4d1SJed Brown . r6 - memory allocated in sixth chunk 8561795a4d1SJed Brown - r7 - memory allocated in seventh chunk 8571795a4d1SJed Brown 8581795a4d1SJed Brown Level: developer 8591795a4d1SJed Brown 860db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscMalloc7()`, `PetscFree7()` 8611795a4d1SJed Brown 8621795a4d1SJed Brown M*/ 86366122d6dSBarry Smith #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)((size_t)m1)*sizeof(**(r1)),(r1),(size_t)((size_t)m2)*sizeof(**(r2)),(r2),(size_t)((size_t)m3)*sizeof(**(r3)),(r3),(size_t)((size_t)m4)*sizeof(**(r4)),(r4),(size_t)((size_t)m5)*sizeof(**(r5)),(r5),(size_t)((size_t)m6)*sizeof(**(r6)),(r6),(size_t)((size_t)m7)*sizeof(**(r7)),(r7)) 8641795a4d1SJed Brown 8651795a4d1SJed Brown /*MC 866*87497f52SBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to `PETSC_MEMALIGN` 867d382aafbSBarry Smith 868eca87e8dSBarry Smith Synopsis: 869aaa7dc30SBarry Smith #include <petscsys.h> 870b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 871eca87e8dSBarry Smith 872eca87e8dSBarry Smith Not Collective 873eca87e8dSBarry Smith 874d382aafbSBarry Smith Output Parameter: 875b00a9115SJed Brown . result - memory allocated, sized to match pointer type 876d382aafbSBarry Smith 877d382aafbSBarry Smith Level: beginner 878d382aafbSBarry Smith 879db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscMalloc()`, `PetscNewLog()`, `PetscCalloc1()`, `PetscMalloc1()` 880d382aafbSBarry Smith 881d382aafbSBarry Smith M*/ 882b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 883ad0619ddSBarry Smith 884ad0619ddSBarry Smith /*MC 885*87497f52SBarry Smith PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to `PETSC_MEMALIGN`. Associates the memory allocated 886*87497f52SBarry Smith with the given object using `PetscLogObjectMemory()`. 887ad0619ddSBarry Smith 888ad0619ddSBarry Smith Synopsis: 889aaa7dc30SBarry Smith #include <petscsys.h> 890b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 891ad0619ddSBarry Smith 892ad0619ddSBarry Smith Not Collective 893ad0619ddSBarry Smith 894ad0619ddSBarry Smith Input Parameter: 895b00a9115SJed Brown . obj - object memory is logged to 896ad0619ddSBarry Smith 897ad0619ddSBarry Smith Output Parameter: 898b00a9115SJed Brown . result - memory allocated, sized to match pointer type 899ad0619ddSBarry Smith 900ad0619ddSBarry Smith Level: developer 901ad0619ddSBarry Smith 902db781477SPatrick Sanan .seealso: `PetscFree()`, `PetscMalloc()`, `PetscNew()`, `PetscLogObjectMemory()`, `PetscCalloc1()`, `PetscMalloc1()` 903ad0619ddSBarry Smith 904ad0619ddSBarry Smith M*/ 905d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 906d382aafbSBarry Smith 907d382aafbSBarry Smith /*MC 908d382aafbSBarry Smith PetscFree - Frees memory 909d382aafbSBarry Smith 910eca87e8dSBarry Smith Synopsis: 911aaa7dc30SBarry Smith #include <petscsys.h> 912eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 913eca87e8dSBarry Smith 914eca87e8dSBarry Smith Not Collective 915eca87e8dSBarry Smith 916d382aafbSBarry Smith Input Parameter: 9177f4976b7SJacob Faibussowitsch . memory - memory to free (the pointer is ALWAYS set to NULL upon success) 918d382aafbSBarry Smith 919d382aafbSBarry Smith Level: beginner 920d382aafbSBarry Smith 92149d7da52SJed Brown Notes: 922*87497f52SBarry Smith Do not free memory obtained with `PetscMalloc2()`, `PetscCalloc2()` etc, they must be freed with `PetscFree2()` etc. 923390e1bf2SBarry Smith 924*87497f52SBarry Smith It is safe to call `PetscFree()` on a NULL pointer. 925d382aafbSBarry Smith 926db781477SPatrick Sanan .seealso: `PetscNew()`, `PetscMalloc()`, `PetscNewLog()`, `PetscMalloc1()`, `PetscCalloc1()` 927d382aafbSBarry Smith 928d382aafbSBarry Smith M*/ 929ffc31a0eSLisandro Dalcin #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = NULL,0)) 930d382aafbSBarry Smith 931d382aafbSBarry Smith /*MC 932*87497f52SBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with `PetscMalloc2()` 933d382aafbSBarry Smith 934eca87e8dSBarry Smith Synopsis: 935aaa7dc30SBarry Smith #include <petscsys.h> 936eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 937eca87e8dSBarry Smith 938eca87e8dSBarry Smith Not Collective 939eca87e8dSBarry Smith 940e28ce29aSPatrick Sanan Input Parameters: 941d382aafbSBarry Smith + memory1 - memory to free 942d382aafbSBarry Smith - memory2 - 2nd memory to free 943d382aafbSBarry Smith 944d382aafbSBarry Smith Level: developer 945d382aafbSBarry Smith 94695452b02SPatrick Sanan Notes: 947*87497f52SBarry Smith Memory must have been obtained with `PetscMalloc2()` 948d382aafbSBarry Smith 949db781477SPatrick Sanan .seealso: `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscFree()` 950d382aafbSBarry Smith 951d382aafbSBarry Smith M*/ 952ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 953d382aafbSBarry Smith 954d382aafbSBarry Smith /*MC 955*87497f52SBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with `PetscMalloc3()` 956d382aafbSBarry Smith 957eca87e8dSBarry Smith Synopsis: 958aaa7dc30SBarry Smith #include <petscsys.h> 959eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 960eca87e8dSBarry Smith 961eca87e8dSBarry Smith Not Collective 962eca87e8dSBarry Smith 963e28ce29aSPatrick Sanan Input Parameters: 964d382aafbSBarry Smith + memory1 - memory to free 965d382aafbSBarry Smith . memory2 - 2nd memory to free 966d382aafbSBarry Smith - memory3 - 3rd memory to free 967d382aafbSBarry Smith 968d382aafbSBarry Smith Level: developer 969d382aafbSBarry Smith 97095452b02SPatrick Sanan Notes: 971*87497f52SBarry Smith Memory must have been obtained with `PetscMalloc3()` 972d382aafbSBarry Smith 973db781477SPatrick Sanan .seealso: `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscFree()`, `PetscMalloc3()` 974d382aafbSBarry Smith 975d382aafbSBarry Smith M*/ 976ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 977d382aafbSBarry Smith 978d382aafbSBarry Smith /*MC 979*87497f52SBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with `PetscMalloc4()` 980d382aafbSBarry Smith 981eca87e8dSBarry Smith Synopsis: 982aaa7dc30SBarry Smith #include <petscsys.h> 983eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 984eca87e8dSBarry Smith 985eca87e8dSBarry Smith Not Collective 986eca87e8dSBarry Smith 987e28ce29aSPatrick Sanan Input Parameters: 988d382aafbSBarry Smith + m1 - memory to free 989d382aafbSBarry Smith . m2 - 2nd memory to free 990d382aafbSBarry Smith . m3 - 3rd memory to free 991d382aafbSBarry Smith - m4 - 4th memory to free 992d382aafbSBarry Smith 993d382aafbSBarry Smith Level: developer 994d382aafbSBarry Smith 99595452b02SPatrick Sanan Notes: 996*87497f52SBarry Smith Memory must have been obtained with `PetscMalloc4()` 997d382aafbSBarry Smith 998db781477SPatrick Sanan .seealso: `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscFree()`, `PetscMalloc3()`, `PetscMalloc4()` 999d382aafbSBarry Smith 1000d382aafbSBarry Smith M*/ 1001ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith /*MC 1004*87497f52SBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with `PetscMalloc5()` 1005d382aafbSBarry Smith 1006eca87e8dSBarry Smith Synopsis: 1007aaa7dc30SBarry Smith #include <petscsys.h> 1008eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1009eca87e8dSBarry Smith 1010eca87e8dSBarry Smith Not Collective 1011eca87e8dSBarry Smith 1012e28ce29aSPatrick Sanan Input Parameters: 1013d382aafbSBarry Smith + m1 - memory to free 1014d382aafbSBarry Smith . m2 - 2nd memory to free 1015d382aafbSBarry Smith . m3 - 3rd memory to free 1016d382aafbSBarry Smith . m4 - 4th memory to free 1017d382aafbSBarry Smith - m5 - 5th memory to free 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith Level: developer 1020d382aafbSBarry Smith 102195452b02SPatrick Sanan Notes: 1022*87497f52SBarry Smith Memory must have been obtained with `PetscMalloc5()` 1023d382aafbSBarry Smith 1024db781477SPatrick Sanan .seealso: `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscFree()`, `PetscMalloc3()`, `PetscMalloc4()`, `PetscMalloc5()` 1025d382aafbSBarry Smith 1026d382aafbSBarry Smith M*/ 1027ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1028d382aafbSBarry Smith 1029d382aafbSBarry Smith /*MC 1030*87497f52SBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with `PetscMalloc6()` 1031d382aafbSBarry Smith 1032eca87e8dSBarry Smith Synopsis: 1033aaa7dc30SBarry Smith #include <petscsys.h> 1034eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1035eca87e8dSBarry Smith 1036eca87e8dSBarry Smith Not Collective 1037eca87e8dSBarry Smith 1038e28ce29aSPatrick Sanan Input Parameters: 1039d382aafbSBarry Smith + m1 - memory to free 1040d382aafbSBarry Smith . m2 - 2nd memory to free 1041d382aafbSBarry Smith . m3 - 3rd memory to free 1042d382aafbSBarry Smith . m4 - 4th memory to free 1043d382aafbSBarry Smith . m5 - 5th memory to free 1044d382aafbSBarry Smith - m6 - 6th memory to free 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith Level: developer 1047d382aafbSBarry Smith 104895452b02SPatrick Sanan Notes: 1049*87497f52SBarry Smith Memory must have been obtained with `PetscMalloc6()` 1050d382aafbSBarry Smith 1051db781477SPatrick Sanan .seealso: `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscFree()`, `PetscMalloc3()`, `PetscMalloc4()`, `PetscMalloc5()`, `PetscMalloc6()` 1052d382aafbSBarry Smith 1053d382aafbSBarry Smith M*/ 1054ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1055d382aafbSBarry Smith 1056d382aafbSBarry Smith /*MC 1057*87497f52SBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with `PetscMalloc7()` 1058d382aafbSBarry Smith 1059eca87e8dSBarry Smith Synopsis: 1060aaa7dc30SBarry Smith #include <petscsys.h> 1061eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1062eca87e8dSBarry Smith 1063eca87e8dSBarry Smith Not Collective 1064eca87e8dSBarry Smith 1065e28ce29aSPatrick Sanan Input Parameters: 1066d382aafbSBarry Smith + m1 - memory to free 1067d382aafbSBarry Smith . m2 - 2nd memory to free 1068d382aafbSBarry Smith . m3 - 3rd memory to free 1069d382aafbSBarry Smith . m4 - 4th memory to free 1070d382aafbSBarry Smith . m5 - 5th memory to free 1071d382aafbSBarry Smith . m6 - 6th memory to free 1072d382aafbSBarry Smith - m7 - 7th memory to free 1073d382aafbSBarry Smith 1074d382aafbSBarry Smith Level: developer 1075d382aafbSBarry Smith 107695452b02SPatrick Sanan Notes: 1077*87497f52SBarry Smith Memory must have been obtained with `PetscMalloc7()` 1078d382aafbSBarry Smith 1079db781477SPatrick Sanan .seealso: `PetscNew()`, `PetscMalloc()`, `PetscMalloc2()`, `PetscFree()`, `PetscMalloc3()`, `PetscMalloc4()`, `PetscMalloc5()`, `PetscMalloc6()`, 1080db781477SPatrick Sanan `PetscMalloc7()` 1081d382aafbSBarry Smith 1082d382aafbSBarry Smith M*/ 1083ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1084d382aafbSBarry Smith 1085ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1086ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1087071fcb05SBarry Smith PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,PetscBool,int,const char[],const char[],void**); 1088efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 10893221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1090ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 109192f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,PetscBool,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[]),PetscErrorCode (*)(size_t,int,const char[],const char[], void **)); 1092014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1093d382aafbSBarry Smith 1094d382aafbSBarry Smith /* 1095c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1096c1706be6SHong Zhang */ 1097c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1098c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 109931f06eaaSHong Zhang #if defined(PETSC_HAVE_CUDA) 110031f06eaaSHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetCUDAHost(void); 110131f06eaaSHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetCUDAHost(void); 110231f06eaaSHong Zhang #endif 110359af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP) 110459af0bd3SScott Kruger PETSC_EXTERN PetscErrorCode PetscMallocSetHIPHost(void); 110559af0bd3SScott Kruger PETSC_EXTERN PetscErrorCode PetscMallocResetHIPHost(void); 110659af0bd3SScott Kruger #endif 110759af0bd3SScott Kruger 1108a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 110936763ca0SBas van 't Hof #define MPIU_2PETSCLOGDOUBLE MPI_2DOUBLE_PRECISION 1110a5057860SBarry Smith 1111a5057860SBarry Smith /* 111266d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1113d382aafbSBarry Smith */ 1114014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 111592f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocView(FILE *); 1116014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1118e3ed9ee7SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocPushMaximumUsage(int); 1119e3ed9ee7SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocPopMaximumUsage(int,PetscLogDouble*); 112092f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocSetDebug(PetscBool,PetscBool); 112192f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*,PetscBool*,PetscBool*); 1122efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 112392f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocViewSet(PetscLogDouble); 112492f119d6SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocViewGet(PetscBool*); 1125608c71bfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscMallocLogRequestedSizeSet(PetscBool); 1126608c71bfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscMallocLogRequestedSizeGet(PetscBool*); 1127d382aafbSBarry Smith 11286a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1129014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1130014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1131014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 11328e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith /* 1135d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1136d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1137d382aafbSBarry Smith functionality and/or error checking. 1138d382aafbSBarry Smith */ 1139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1140014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1141d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1142014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1143014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1144014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1145014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1146014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1147014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1148014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1149a126751eSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrlcat(char[],const char[],size_t); 1150014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1151014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1152014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 11532f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1154014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1155014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1156014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1157014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11582c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1159014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1160014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 116147340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 11626fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 11636991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 11646991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1166d382aafbSBarry Smith 1167573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1168573b0fb4SBarry Smith 1169014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1170014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1171014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1172d382aafbSBarry Smith 1173e94e781bSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscStrInList(const char[],const char[],char,PetscBool*); 117480b92c66SBarry Smith PETSC_EXTERN const char *PetscBasename(const char []); 1175a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1176a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1177a53986e1SJed Brown 1178d382aafbSBarry Smith /* 1179d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1180d382aafbSBarry Smith */ 1181367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1182570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1183de272c7aSSatish Balay PETSC_EXTERN MPI_Op MPIU_SUM; 1184014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1185014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1186d9822059SBarry Smith #else 1187de272c7aSSatish Balay #define MPIU_SUM MPI_SUM 1188d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1189d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1190d9822059SBarry Smith #endif 1191014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1192d382aafbSBarry Smith 1193014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1194014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1195eb3f98d2SBarry Smith 119695c0884eSLisandro Dalcin PETSC_EXTERN const char *const PetscFileModes[]; 1197d6a4318aSJed Brown 1198639ff905SBarry Smith /* 1199639ff905SBarry Smith Defines PETSc error handling. 1200639ff905SBarry Smith */ 1201639ff905SBarry Smith #include <petscerror.h> 1202d382aafbSBarry Smith 1203660278c0SBarry Smith PETSC_EXTERN PetscBool PetscCIEnabled; /* code is running in the PETSc test harness CI */ 1204660278c0SBarry Smith PETSC_EXTERN PetscBool PetscCIEnabledPortableErrorOutput; /* error output is stripped to ensure portability of error messages across systems */ 1205660278c0SBarry Smith PETSC_EXTERN const char *PetscCIFilename(const char *); 1206660278c0SBarry Smith PETSC_EXTERN int PetscCILinenumber(int); 1207660278c0SBarry Smith 12080700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1209014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1210014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1211014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 121281256985SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscObjectGetId(PetscObject,PetscObjectId*); 121381256985SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscObjectCompareId(PetscObject,PetscObjectId,PetscBool*); 121481256985SMatthew G. Knepley 1215d382aafbSBarry Smith /* 1216d382aafbSBarry Smith Routines that get memory usage information from the OS 1217d382aafbSBarry Smith */ 1218014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1219014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1220014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1221b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1222d382aafbSBarry Smith 1223014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith /* 1226d382aafbSBarry Smith Initialization of PETSc 1227d382aafbSBarry Smith */ 1228014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1229014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1230014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1231014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1232014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1233014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1234014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1235014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1236014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1237014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1238d382aafbSBarry Smith 1239014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1240607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1241d382aafbSBarry Smith 1242014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1245014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1246d382aafbSBarry Smith 1247a50e088cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscMonitorCompare(PetscErrorCode (*)(void),void *,PetscErrorCode (*)(void**),PetscErrorCode (*)(void),void *,PetscErrorCode (*)(void**),PetscBool *); 1248a50e088cSMatthew G. Knepley 1249d382aafbSBarry Smith /* 1250d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 12512981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1252d382aafbSBarry Smith */ 1253638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1254638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1255638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith /* 1258d382aafbSBarry Smith Functions that can act on any PETSc object. 1259d382aafbSBarry Smith */ 1260014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1261014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1262014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1263014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1264014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1265014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1266014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1267014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1268014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1269014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1270014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1271014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1272014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt*); 1274014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1275014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1276014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject*); 1277bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1278bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1280014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 12810eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 12820eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1283014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt*); 1284d382aafbSBarry Smith 1285665c2dedSJed Brown #include <petscviewertypes.h> 1286639ff905SBarry Smith #include <petscoptions.h> 1287639ff905SBarry Smith 1288608c71bfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscMallocTraceSet(PetscViewer,PetscBool,PetscLogDouble); 1289608c71bfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscMallocTraceGet(PetscBool*); 1290608c71bfSMatthew G. Knepley 12910633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 12920633abcbSJed Brown 1293c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1294dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1295639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 12960005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 12970005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1299014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1300014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1301014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1303014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1305685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 13084099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1310b9e7e5c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1313d382aafbSBarry Smith 1314e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 13157aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1316e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1317e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1318e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1319e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1320e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1321e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1322e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1323e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1324e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 132515681b3cSBarry Smith 1326ec7429eaSBarry Smith #else 13277aab2a10SBarry Smith #define PetscSAWsBlock() 0 1328e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1329e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1330e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1331e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1332e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1333e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1334e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1335e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1336e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 133715681b3cSBarry Smith 1338ec7429eaSBarry Smith #endif 1339b90c6cbeSBarry Smith 134082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 134182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 134282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 1343258ec3d2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDLAddr(void (*)(void), char **); 1344258ec3d2SMatthew G. Knepley #ifdef PETSC_HAVE_CXX 1345258ec3d2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDemangleSymbol(const char *, char **); 1346258ec3d2SMatthew G. Knepley #endif 13477d5d4d99SBarry Smith 13485fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1349a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 13505fe58b6fSBarry Smith #endif 13517eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1352a64a8e02SBarry Smith 1353140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1354140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1355140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1356140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1357140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1358140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1359d382aafbSBarry Smith 1360d382aafbSBarry Smith /* 1361503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1362d382aafbSBarry Smith link libraries that will be loaded as needed. 1363d382aafbSBarry Smith */ 1364a240a19fSJed Brown 1365a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1366a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1367140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 13681c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 13691c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 137044ef3d73SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[],const char[]); 1371140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1372140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1373140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 13742e956fe4SStefano Zampini PETSC_EXTERN PetscErrorCode PetscFunctionListPrintNonEmpty(PetscFunctionList); 13752e956fe4SStefano Zampini PETSC_EXTERN PetscErrorCode PetscFunctionListPrintAll(void); 1376d382aafbSBarry Smith 1377014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1385d382aafbSBarry Smith 1386d382aafbSBarry Smith /* 1387d382aafbSBarry Smith Useful utility routines 1388d382aafbSBarry Smith */ 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1391d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode PetscSplitOwnershipEqual(MPI_Comm,PetscInt*,PetscInt*); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 139658b5cd2aSSatish Balay PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxInt(MPI_Comm,const PetscInt[2],PetscInt[2]); 139758b5cd2aSSatish Balay PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxReal(MPI_Comm,const PetscReal[2],PetscReal[2]); 1398d382aafbSBarry Smith 139964ac3b0dSPatrick Sanan /*MC 1400*87497f52SBarry Smith PetscNot - negates a logical type value and returns result as a `PetscBool` 1401503cfb0cSBarry Smith 1402e28ce29aSPatrick Sanan Notes: 1403e28ce29aSPatrick Sanan This is useful in cases like 1404503cfb0cSBarry Smith $ int *a; 1405ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 14061cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 140764ac3b0dSPatrick Sanan 140864ac3b0dSPatrick Sanan Level: beginner 140964ac3b0dSPatrick Sanan 1410db781477SPatrick Sanan .seealso `:` `PetscBool`, `PETSC_TRUE`, `PETSC_FALSE` 141164ac3b0dSPatrick Sanan M*/ 1412d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1413503cfb0cSBarry Smith 1414d382aafbSBarry Smith /*MC 1415d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1416d382aafbSBarry Smith 1417d382aafbSBarry Smith Synopsis: 1418aaa7dc30SBarry Smith #include <petscsys.h> 1419659f7ba0SBarry Smith PetscErrorCode (*PetscHelpPrintf)(MPI_Comm comm, const char format[],args); 1420d382aafbSBarry Smith 1421659f7ba0SBarry Smith Collective on comm 1422eca87e8dSBarry Smith 1423d382aafbSBarry Smith Input Parameters: 1424659f7ba0SBarry Smith + comm - the MPI communicator over which the help message is printed 1425d382aafbSBarry Smith . format - the usual printf() format string 1426659f7ba0SBarry Smith - args - arguments to be printed 1427d382aafbSBarry Smith 1428d382aafbSBarry Smith Level: developer 1429d382aafbSBarry Smith 1430d382aafbSBarry Smith Fortran Note: 1431d382aafbSBarry Smith This routine is not supported in Fortran. 1432d382aafbSBarry Smith 1433659f7ba0SBarry Smith Note: 1434659f7ba0SBarry Smith You can change how help messages are printed by replacing the function pointer with a function that does not simply write to stdout. 1435659f7ba0SBarry Smith 1436659f7ba0SBarry Smith To use, write your own function, for example, 1437659f7ba0SBarry Smith $PetscErrorCode mypetschelpprintf(MPI_Comm comm,const char format[],....) 1438659f7ba0SBarry Smith ${ 1439659f7ba0SBarry Smith $ PetscFunctionReturn(0); 1440659f7ba0SBarry Smith $} 1441659f7ba0SBarry Smith then do the assigment 1442659f7ba0SBarry Smith $ PetscHelpPrintf = mypetschelpprintf; 1443*87497f52SBarry Smith You can do the assignment before `PetscInitialize()`. 1444659f7ba0SBarry Smith 1445*87497f52SBarry Smith The default routine used is called `PetscHelpPrintfDefault()`. 1446d382aafbSBarry Smith 1447db781477SPatrick Sanan .seealso: `PetscFPrintf()`, `PetscSynchronizedPrintf()`, `PetscErrorPrintf()` 1448d382aafbSBarry Smith M*/ 14493ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...) PETSC_ATTRIBUTE_FORMAT(2,3); 1450d382aafbSBarry Smith 1451fcfd50ebSBarry Smith /* 1452fcfd50ebSBarry Smith Defines PETSc profiling. 1453fcfd50ebSBarry Smith */ 14542c8e378dSBarry Smith #include <petsclog.h> 1455fcfd50ebSBarry Smith 1456fcfd50ebSBarry Smith /* 1457fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1458fcfd50ebSBarry Smith */ 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 14623ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...) PETSC_ATTRIBUTE_FORMAT(3,4); 14633ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...) PETSC_ATTRIBUTE_FORMAT(2,3); 14643ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...) PETSC_ATTRIBUTE_FORMAT(3,4); 14653ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...) PETSC_ATTRIBUTE_FORMAT(3,5); 14661b5687a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFormatRealArray(char[],size_t,const char*,PetscInt,const PetscReal[]); 1467fcfd50ebSBarry Smith 14683ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...) PETSC_ATTRIBUTE_FORMAT(1,2); 14693ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...) PETSC_ATTRIBUTE_FORMAT(1,2); 14703ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...) PETSC_ATTRIBUTE_FORMAT(2,3); 1471d382aafbSBarry Smith 1472d781fa04SBarry Smith PETSC_EXTERN PetscErrorCode PetscFormatConvertGetSize(const char*,size_t*); 1473d781fa04SBarry Smith PETSC_EXTERN PetscErrorCode PetscFormatConvert(const char*,char *); 1474d781fa04SBarry Smith 1475d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1477016831caSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*); 147874ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1479d382aafbSBarry Smith #endif 1480d382aafbSBarry Smith 14813ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...) PETSC_ATTRIBUTE_FORMAT(2,3); 14823ca90d2dSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...) PETSC_ATTRIBUTE_FORMAT(3,4); 14830ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1484014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1485014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1487014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1488d382aafbSBarry Smith 1489014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void**); 1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void*); 1492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer*); 1494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer,PetscErrorCode (*)(void*)); 1495b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1496d382aafbSBarry Smith 1497d382aafbSBarry Smith /* 1498d382aafbSBarry Smith For use in debuggers 1499d382aafbSBarry Smith */ 1500014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1501014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1502014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1505d382aafbSBarry Smith 1506a663daf8SBarry Smith #include <stddef.h> 1507a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1508d382aafbSBarry Smith #include <stdlib.h> 15096c7e564aSBarry Smith 15104a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1511d382aafbSBarry Smith #include <xmmintrin.h> 1512d382aafbSBarry Smith #endif 1513d382aafbSBarry Smith 1514d382aafbSBarry Smith /*@C 1515580bdb30SBarry Smith PetscMemmove - Copies n bytes, beginning at location b, to the space 1516580bdb30SBarry Smith beginning at location a. Copying between regions that overlap will 1517*87497f52SBarry Smith take place correctly. Use `PetscMemcpy()` if the locations do not overlap 1518580bdb30SBarry Smith 1519580bdb30SBarry Smith Not Collective 1520580bdb30SBarry Smith 1521580bdb30SBarry Smith Input Parameters: 1522580bdb30SBarry Smith + b - pointer to initial memory space 1523580bdb30SBarry Smith . a - pointer to copy space 1524580bdb30SBarry Smith - n - length (in bytes) of space to copy 1525580bdb30SBarry Smith 1526580bdb30SBarry Smith Level: intermediate 1527580bdb30SBarry Smith 1528*87497f52SBarry Smith Notes: 1529*87497f52SBarry Smith `PetscArraymove()` is preferred 1530580bdb30SBarry Smith 1531*87497f52SBarry Smith This routine is analogous to `memmove()`. 1532*87497f52SBarry Smith 1533*87497f52SBarry Smith Developers Note: 1534*87497f52SBarry Smith This is inlined for performance 1535580bdb30SBarry Smith 1536db781477SPatrick Sanan .seealso: `PetscMemcpy()`, `PetscMemcmp()`, `PetscArrayzero()`, `PetscMemzero()`, `PetscArraycmp()`, `PetscArraycpy()`, `PetscStrallocpy()`, 1537db781477SPatrick Sanan `PetscArraymove()` 1538580bdb30SBarry Smith @*/ 15399fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscMemmove(void *a,const void *b,size_t n) 1540580bdb30SBarry Smith { 1541580bdb30SBarry Smith PetscFunctionBegin; 15429a202e32SJacob Faibussowitsch if (n > 0) { 15432c71b3e2SJacob Faibussowitsch PetscCheck(a,PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to null pointer"); 15442c71b3e2SJacob Faibussowitsch PetscCheck(b,PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 15459a202e32SJacob Faibussowitsch } 1546580bdb30SBarry Smith #if !defined(PETSC_HAVE_MEMMOVE) 1547580bdb30SBarry Smith if (a < b) { 1548580bdb30SBarry Smith if (a <= b - n) memcpy(a,b,n); 1549580bdb30SBarry Smith else { 1550580bdb30SBarry Smith memcpy(a,b,(int)(b - a)); 1551580bdb30SBarry Smith PetscMemmove(b,b + (int)(b - a),n - (int)(b - a)); 1552580bdb30SBarry Smith } 1553580bdb30SBarry Smith } else { 1554580bdb30SBarry Smith if (b <= a - n) memcpy(a,b,n); 1555580bdb30SBarry Smith else { 1556580bdb30SBarry Smith memcpy(b + n,b + (n - (int)(a - b)),(int)(a - b)); 1557580bdb30SBarry Smith PetscMemmove(a,b,n - (int)(a - b)); 1558580bdb30SBarry Smith } 1559580bdb30SBarry Smith } 1560580bdb30SBarry Smith #else 1561580bdb30SBarry Smith memmove((char*)(a),(char*)(b),n); 1562580bdb30SBarry Smith #endif 1563580bdb30SBarry Smith PetscFunctionReturn(0); 1564580bdb30SBarry Smith } 1565580bdb30SBarry Smith 1566d382aafbSBarry Smith /*@C 1567d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1568d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1569*87497f52SBarry Smith `PetscMemmove()` in that case. 1570d382aafbSBarry Smith 1571d382aafbSBarry Smith Not Collective 1572d382aafbSBarry Smith 1573d382aafbSBarry Smith Input Parameters: 1574d382aafbSBarry Smith + b - pointer to initial memory space 1575d382aafbSBarry Smith - n - length (in bytes) of space to copy 1576d382aafbSBarry Smith 1577d382aafbSBarry Smith Output Parameter: 1578d382aafbSBarry Smith . a - pointer to copy space 1579d382aafbSBarry Smith 1580d382aafbSBarry Smith Level: intermediate 1581d382aafbSBarry Smith 1582d382aafbSBarry Smith Compile Option: 1583*87497f52SBarry Smith `PETSC_PREFER_DCOPY_FOR_MEMCPY` will cause the BLAS dcopy() routine to be used 1584d382aafbSBarry Smith for memory copies on double precision values. 1585*87497f52SBarry Smith `PETSC_PREFER_COPY_FOR_MEMCPY` will cause C code to be used 1586d382aafbSBarry Smith for memory copies on double precision values. 1587*87497f52SBarry Smith `PETSC_PREFER_FORTRAN_FORMEMCPY` will cause Fortran code to be used 1588d382aafbSBarry Smith for memory copies on double precision values. 1589d382aafbSBarry Smith 1590*87497f52SBarry Smith Notes: 1591*87497f52SBarry Smith Prefer `PetscArraycpy()` 1592*87497f52SBarry Smith 1593*87497f52SBarry Smith This routine is analogous to `memcpy()`. 1594*87497f52SBarry Smith 15951fd49c25SBarry Smith Not available from Fortran 15961fd49c25SBarry Smith 1597*87497f52SBarry Smith Developer Note: 1598*87497f52SBarry Smith This is inlined for fastest performance 1599f5f57ec0SBarry Smith 1600db781477SPatrick Sanan .seealso: `PetscMemzero()`, `PetscMemcmp()`, `PetscArrayzero()`, `PetscArraycmp()`, `PetscArraycpy()`, `PetscMemmove()`, `PetscStrallocpy()` 1601d382aafbSBarry Smith 1602d382aafbSBarry Smith @*/ 16039fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1604d382aafbSBarry Smith { 1605d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1606c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1607c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1608a7e36092SMatthew G Knepley PetscFunctionBegin; 16099a202e32SJacob Faibussowitsch if (n > 0) { 16102c71b3e2SJacob Faibussowitsch PetscCheck(b,PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 16112c71b3e2SJacob Faibussowitsch PetscCheck(a,PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 16129a202e32SJacob Faibussowitsch } 1613a7e36092SMatthew G Knepley #else 1614d382aafbSBarry Smith PetscFunctionBegin; 1615a7e36092SMatthew G Knepley #endif 1616a47a537aSLisandro Dalcin if (a != b && n > 0) { 1617d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 16182c71b3e2SJacob Faibussowitsch PetscCheck(!((al > bl && (al - bl) < nl) || (bl - al) < nl),PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1619d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 16206244d25cSSatish Balay Length (bytes) %zu first address %zu second address %zu",nl,al,bl); 1621d382aafbSBarry Smith #endif 1622d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1623c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1624d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1625d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1626c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 16279566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(len,&blen)); 1628792fecdfSBarry Smith PetscCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1629d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1630d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1631d382aafbSBarry Smith #else 1632d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 16335f80ce2aSJacob Faibussowitsch for (size_t i=0; i<len; i++) y[i] = x[i]; 1634d382aafbSBarry Smith #endif 1635d382aafbSBarry Smith } else { 1636d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1637d382aafbSBarry Smith } 1638d382aafbSBarry Smith #else 1639d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1640d382aafbSBarry Smith #endif 1641d382aafbSBarry Smith } 1642d382aafbSBarry Smith PetscFunctionReturn(0); 1643d382aafbSBarry Smith } 1644d382aafbSBarry Smith 1645d382aafbSBarry Smith /*@C 1646d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1647d382aafbSBarry Smith 1648d382aafbSBarry Smith Not Collective 1649d382aafbSBarry Smith 1650d382aafbSBarry Smith Input Parameters: 1651d382aafbSBarry Smith + a - pointer to beginning memory location 1652d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1653d382aafbSBarry Smith 1654d382aafbSBarry Smith Level: intermediate 1655d382aafbSBarry Smith 1656d382aafbSBarry Smith Compile Option: 1657*87497f52SBarry Smith `PETSC_PREFER_BZERO` - on certain machines (the IBM RS6000) the bzero() routine happens 1658d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1659d382aafbSBarry Smith 1660*87497f52SBarry Smith Notes: 16611fd49c25SBarry Smith Not available from Fortran 16621fd49c25SBarry Smith 1663*87497f52SBarry Smith Prefer `PetscArrayzero()` 1664*87497f52SBarry Smith 1665*87497f52SBarry Smith Developer Note: 1666*87497f52SBarry Smith This is inlined for fastest performance 1667503cfb0cSBarry Smith 1668db781477SPatrick Sanan .seealso: `PetscMemcpy()`, `PetscMemcmp()`, `PetscArrayzero()`, `PetscArraycmp()`, `PetscArraycpy()`, `PetscMemmove()`, `PetscStrallocpy()` 1669d382aafbSBarry Smith @*/ 16709fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscMemzero(void *a,size_t n) 1671d382aafbSBarry Smith { 1672d382aafbSBarry Smith if (n > 0) { 1673d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 16742c71b3e2SJacob Faibussowitsch PetscCheck(a,PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer with %zu bytes",n); 1675d382aafbSBarry Smith #endif 1676d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1677d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1678d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1679d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1680d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1681d382aafbSBarry Smith } else { 1682d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1683d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1684d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1685d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1686d382aafbSBarry Smith } else { 1687d382aafbSBarry Smith #endif 1688d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1689d382aafbSBarry Smith bzero((char *)a,n); 1690d382aafbSBarry Smith #else 1691d382aafbSBarry Smith memset((char*)a,0,n); 1692d382aafbSBarry Smith #endif 1693d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1694d382aafbSBarry Smith } 1695d382aafbSBarry Smith #endif 1696d382aafbSBarry Smith } 1697d382aafbSBarry Smith return 0; 1698d382aafbSBarry Smith } 1699d382aafbSBarry Smith 1700d382aafbSBarry Smith /*MC 1701580bdb30SBarry Smith PetscArraycmp - Compares two arrays in memory. 1702580bdb30SBarry Smith 1703580bdb30SBarry Smith Synopsis: 1704580bdb30SBarry Smith #include <petscsys.h> 1705580bdb30SBarry Smith PetscErrorCode PetscArraycmp(const anytype *str1,const anytype *str2,size_t cnt,PetscBool *e) 1706580bdb30SBarry Smith 1707580bdb30SBarry Smith Not Collective 1708580bdb30SBarry Smith 1709580bdb30SBarry Smith Input Parameters: 1710580bdb30SBarry Smith + str1 - First array 1711580bdb30SBarry Smith . str2 - Second array 1712580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the arrays 1713580bdb30SBarry Smith 1714580bdb30SBarry Smith Output Parameters: 1715*87497f52SBarry Smith . e - `PETSC_TRUE` if equal else `PETSC_FALSE`. 1716580bdb30SBarry Smith 1717580bdb30SBarry Smith Level: intermediate 1718580bdb30SBarry Smith 1719*87497f52SBarry Smith Notes: 1720*87497f52SBarry Smith This routine is a preferred replacement to `PetscMemcmp()` 1721*87497f52SBarry Smith 1722580bdb30SBarry Smith The arrays must be of the same type 1723580bdb30SBarry Smith 1724db781477SPatrick Sanan .seealso: `PetscMemcpy()`, `PetscMemcmp()`, `PetscArrayzero()`, `PetscMemzero()`, `PetscArraycpy()`, `PetscMemmove()`, `PetscStrallocpy()`, 1725db781477SPatrick Sanan `PetscArraymove()` 1726580bdb30SBarry Smith M*/ 17279e2232c7SLisandro Dalcin #define PetscArraycmp(str1,str2,cnt,e) ((sizeof(*(str1)) != sizeof(*(str2))) || PetscMemcmp(str1,str2,(size_t)(cnt)*sizeof(*(str1)),e)) 1728580bdb30SBarry Smith 17298f8f2f0dSBarry Smith /*MC 1730*87497f52SBarry Smith PetscArraymove - Copies from one array in memory to another, the arrays may overlap. Use `PetscArraycpy()` when the arrays 1731580bdb30SBarry Smith do not overlap 1732580bdb30SBarry Smith 1733580bdb30SBarry Smith Synopsis: 1734580bdb30SBarry Smith #include <petscsys.h> 1735580bdb30SBarry Smith PetscErrorCode PetscArraymove(anytype *str1,const anytype *str2,size_t cnt) 1736580bdb30SBarry Smith 1737580bdb30SBarry Smith Not Collective 1738580bdb30SBarry Smith 1739580bdb30SBarry Smith Input Parameters: 1740580bdb30SBarry Smith + str1 - First array 1741580bdb30SBarry Smith . str2 - Second array 1742580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the arrays 1743580bdb30SBarry Smith 1744580bdb30SBarry Smith Level: intermediate 1745580bdb30SBarry Smith 1746*87497f52SBarry Smith Notes: 1747*87497f52SBarry Smith This routine is a preferred replacement to `PetscMemmove()` 1748*87497f52SBarry Smith 1749580bdb30SBarry Smith The arrays must be of the same type 1750580bdb30SBarry Smith 1751db781477SPatrick Sanan .seealso: `PetscMemcpy()`, `PetscMemcmp()`, `PetscArrayzero()`, `PetscMemzero()`, `PetscArraycpy()`, `PetscMemmove()`, `PetscArraycmp()`, `PetscStrallocpy()` 1752580bdb30SBarry Smith M*/ 17539e2232c7SLisandro Dalcin #define PetscArraymove(str1,str2,cnt) ((sizeof(*(str1)) != sizeof(*(str2))) || PetscMemmove(str1,str2,(size_t)(cnt)*sizeof(*(str1)))) 1754580bdb30SBarry Smith 17558f8f2f0dSBarry Smith /*MC 1756580bdb30SBarry Smith PetscArraycpy - Copies from one array in memory to another 1757580bdb30SBarry Smith 1758580bdb30SBarry Smith Synopsis: 1759580bdb30SBarry Smith #include <petscsys.h> 1760580bdb30SBarry Smith PetscErrorCode PetscArraycpy(anytype *str1,const anytype *str2,size_t cnt) 1761580bdb30SBarry Smith 1762580bdb30SBarry Smith Not Collective 1763580bdb30SBarry Smith 1764580bdb30SBarry Smith Input Parameters: 1765de25709eSStefano Zampini + str1 - First array (destination) 1766de25709eSStefano Zampini . str2 - Second array (source) 1767580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the arrays 1768580bdb30SBarry Smith 1769580bdb30SBarry Smith Level: intermediate 1770580bdb30SBarry Smith 1771*87497f52SBarry Smith Notes: 1772*87497f52SBarry Smith This routine is a preferred replacement to `PetscMemcpy()` 1773*87497f52SBarry Smith 1774580bdb30SBarry Smith The arrays must be of the same type 1775580bdb30SBarry Smith 1776db781477SPatrick Sanan .seealso: `PetscMemcpy()`, `PetscMemcmp()`, `PetscArrayzero()`, `PetscMemzero()`, `PetscArraymove()`, `PetscMemmove()`, `PetscArraycmp()`, `PetscStrallocpy()` 1777580bdb30SBarry Smith M*/ 17789e2232c7SLisandro Dalcin #define PetscArraycpy(str1,str2,cnt) ((sizeof(*(str1)) != sizeof(*(str2))) || PetscMemcpy(str1,str2,(size_t)(cnt)*sizeof(*(str1)))) 1779580bdb30SBarry Smith 17808f8f2f0dSBarry Smith /*MC 1781580bdb30SBarry Smith PetscArrayzero - Zeros an array in memory. 1782580bdb30SBarry Smith 1783580bdb30SBarry Smith Synopsis: 1784580bdb30SBarry Smith #include <petscsys.h> 1785580bdb30SBarry Smith PetscErrorCode PetscArrayzero(anytype *str1,size_t cnt) 1786580bdb30SBarry Smith 1787580bdb30SBarry Smith Not Collective 1788580bdb30SBarry Smith 1789580bdb30SBarry Smith Input Parameters: 1790580bdb30SBarry Smith + str1 - array 1791580bdb30SBarry Smith - cnt - Count of the array, not in bytes, but number of entries in the array 1792580bdb30SBarry Smith 1793580bdb30SBarry Smith Level: intermediate 1794580bdb30SBarry Smith 1795580bdb30SBarry Smith Note: 1796*87497f52SBarry Smith This routine is a preferred replacement to `PetscMemzero()` 1797580bdb30SBarry Smith 1798db781477SPatrick Sanan .seealso: `PetscMemcpy()`, `PetscMemcmp()`, `PetscMemzero()`, `PetscArraycmp()`, `PetscArraycpy()`, `PetscMemmove()`, `PetscStrallocpy()`, `PetscArraymove()` 1799580bdb30SBarry Smith M*/ 18009e2232c7SLisandro Dalcin #define PetscArrayzero(str1,cnt) PetscMemzero(str1,(size_t)(cnt)*sizeof(*(str1))) 1801580bdb30SBarry Smith 1802d382aafbSBarry Smith /*MC 1803d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1804d382aafbSBarry Smith 1805eca87e8dSBarry Smith Synopsis: 1806aaa7dc30SBarry Smith #include <petscsys.h> 1807eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1808eca87e8dSBarry Smith 1809d382aafbSBarry Smith Not Collective 1810d382aafbSBarry Smith 1811d382aafbSBarry Smith Input Parameters: 1812d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1813d382aafbSBarry Smith . n - number of elements to fetch 1814d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 181550d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1816d382aafbSBarry Smith 1817d382aafbSBarry Smith Level: developer 1818d382aafbSBarry Smith 1819d382aafbSBarry Smith Notes: 1820d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1821d382aafbSBarry Smith 182250d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 182350d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 1824*87497f52SBarry Smith + `PETSC_PREFETCH_HINT_NTA` - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 1825*87497f52SBarry Smith . `PETSC_PREFETCH_HINT_T0` - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 1826*87497f52SBarry Smith . `PETSC_PREFETCH_HINT_T1` - Fetch to level 2 and higher (not L1). 1827*87497f52SBarry Smith - `PETSC_PREFETCH_HINT_T2` - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1828d382aafbSBarry Smith 1829d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1830d382aafbSBarry Smith address). 1831d382aafbSBarry Smith 1832d382aafbSBarry Smith M*/ 1833d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1834d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1835d382aafbSBarry Smith for (; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1836d382aafbSBarry Smith } while (0) 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith /* 1839d382aafbSBarry Smith Determine if some of the kernel computation routines use 1840d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1841d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1842d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1843e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1844d382aafbSBarry Smith */ 1845d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1846d382aafbSBarry Smith 1847d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1848d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1849d382aafbSBarry Smith #endif 1850d382aafbSBarry Smith 18515a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 18525a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1853d382aafbSBarry Smith #endif 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1856d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1857d382aafbSBarry Smith #endif 1858d382aafbSBarry Smith 1859d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1860d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1861d382aafbSBarry Smith #endif 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1864d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1865d382aafbSBarry Smith #endif 1866d382aafbSBarry Smith 1867d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1868d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1869d382aafbSBarry Smith #endif 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1872d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1873d382aafbSBarry Smith #endif 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1876d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1877d382aafbSBarry Smith #endif 1878d382aafbSBarry Smith 1879d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1880d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1881d382aafbSBarry Smith #endif 1882d382aafbSBarry Smith 1883d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1884d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1885d382aafbSBarry Smith #endif 1886d382aafbSBarry Smith 1887d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1888d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1889d382aafbSBarry Smith #endif 1890d382aafbSBarry Smith 1891d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1892d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1893d382aafbSBarry Smith #endif 1894d382aafbSBarry Smith 1895d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1896d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1897d382aafbSBarry Smith #endif 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1900d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1901d382aafbSBarry Smith #endif 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith #endif 1904d382aafbSBarry Smith 1905d382aafbSBarry Smith /* 1906d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1907d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1908d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1909d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1910d382aafbSBarry Smith ugly extern "C" {} wrappers. 1911d382aafbSBarry Smith */ 1912d382aafbSBarry Smith #if defined(__cplusplus) 1913d382aafbSBarry Smith # define EXTERN_C_BEGIN extern "C" { 1914d382aafbSBarry Smith # define EXTERN_C_END } 1915d382aafbSBarry Smith #else 1916d382aafbSBarry Smith # define EXTERN_C_BEGIN 1917d382aafbSBarry Smith # define EXTERN_C_END 1918d382aafbSBarry Smith #endif 1919d382aafbSBarry Smith 1920d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith /*MC 1923d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1924d382aafbSBarry Smith communication 1925d382aafbSBarry Smith 1926d382aafbSBarry Smith Level: beginner 1927d382aafbSBarry Smith 1928d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1929d382aafbSBarry Smith 1930db781477SPatrick Sanan .seealso: `PETSC_COMM_WORLD`, `PETSC_COMM_SELF` 1931d382aafbSBarry Smith M*/ 1932d382aafbSBarry Smith 1933d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1936c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_write_at(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1937c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_read_at(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1938c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_write_at_all(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1939c4e82887SLisandro Dalcin PETSC_EXTERN PetscErrorCode MPIU_File_read_at_all(MPI_File,MPI_Offset,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1940d382aafbSBarry Smith #endif 1941d382aafbSBarry Smith 1942d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 1943d382aafbSBarry Smith 1944d382aafbSBarry Smith /* Limit MPI to 32-bits */ 1945d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 1946d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 1947d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 1948d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 1949d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 1950eee0c0a6SToby Isaac #define PETSC_CUBLAS_INT_MAX 2147483647 1951d382aafbSBarry Smith 195261b0d812SBarry Smith /*@C 1953*87497f52SBarry Smith PetscIntCast - casts a `PetscInt64` (which is 64 bits in size) to a `PetscInt` (which may be 32 bits in size), generates an 1954*87497f52SBarry Smith error if the `PetscInt` is not large enough to hold the number. 1955c73702f5SBarry Smith 1956c73702f5SBarry Smith Not Collective 1957c73702f5SBarry Smith 1958c73702f5SBarry Smith Input Parameter: 1959*87497f52SBarry Smith . a - the `PetscInt64` value 1960c73702f5SBarry Smith 1961c73702f5SBarry Smith Output Parameter: 1962*87497f52SBarry Smith . b - the resulting `PetscInt` value 1963c73702f5SBarry Smith 1964c73702f5SBarry Smith Level: advanced 1965c73702f5SBarry Smith 1966*87497f52SBarry Smith Notes: 1967*87497f52SBarry Smith If integers needed for the applications are too large to fit in 32 bit ints you can ./configure using --with-64-bit-indices to make `PetscInt` use 64 bit ints 1968c73702f5SBarry Smith 1969c73702f5SBarry Smith Not available from Fortran 1970c73702f5SBarry Smith 1971db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscMPIIntCast()`, `PetscBLASIntCast()`, `PetscIntMultError()`, `PetscIntSumError()` 1972c73702f5SBarry Smith @*/ 19739fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscIntCast(PetscInt64 a,PetscInt *b) 1974c73702f5SBarry Smith { 1975c73702f5SBarry Smith PetscFunctionBegin; 1976c73702f5SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 19773ca90d2dSJacob Faibussowitsch if (a > PETSC_MAX_INT) { 19783ca90d2dSJacob Faibussowitsch *b = 0; 197998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"%" PetscInt64_FMT " is too big for PetscInt, you may need to ./configure using --with-64-bit-indices",a); 19803ca90d2dSJacob Faibussowitsch } 1981c73702f5SBarry Smith #endif 1982c73702f5SBarry Smith *b = (PetscInt)(a); 1983c73702f5SBarry Smith PetscFunctionReturn(0); 1984c73702f5SBarry Smith } 1985c73702f5SBarry Smith 1986c73702f5SBarry Smith /*@C 1987*87497f52SBarry Smith PetscCountCast - casts a `PetscCount` to a `PetscInt` (which may be 32 bits in size), generates an 1988*87497f52SBarry Smith error if the `PetscInt` is not large enough to hold the number. 1989981bb840SJunchao Zhang 1990981bb840SJunchao Zhang Not Collective 1991981bb840SJunchao Zhang 1992981bb840SJunchao Zhang Input Parameter: 1993*87497f52SBarry Smith . a - the `PetscCount` value 1994981bb840SJunchao Zhang 1995981bb840SJunchao Zhang Output Parameter: 1996*87497f52SBarry Smith . b - the resulting `PetscInt` value 1997981bb840SJunchao Zhang 1998981bb840SJunchao Zhang Level: advanced 1999981bb840SJunchao Zhang 2000981bb840SJunchao Zhang Notes: 2001981bb840SJunchao Zhang If integers needed for the applications are too large to fit in 32 bit ints you can ./configure using --with-64-bit-indices to make PetscInt use 64 bit ints 2002981bb840SJunchao Zhang 2003981bb840SJunchao Zhang Not available from Fortran 2004981bb840SJunchao Zhang 2005db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscMPIIntCast()`, `PetscBLASIntCast()`, `PetscIntMultError()`, `PetscIntSumError()`, `PetscIntCast()` 2006981bb840SJunchao Zhang @*/ 2007981bb840SJunchao Zhang static inline PetscErrorCode PetscCountCast(PetscCount a,PetscInt *b) 2008981bb840SJunchao Zhang { 2009981bb840SJunchao Zhang PetscFunctionBegin; 2010981bb840SJunchao Zhang if (sizeof(PetscCount) > sizeof(PetscInt) && a > PETSC_MAX_INT) { 2011981bb840SJunchao Zhang *b = 0; 2012981bb840SJunchao Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"%" PetscCount_FMT " is too big for PetscInt, you may need to ./configure using --with-64-bit-indices",a); 2013981bb840SJunchao Zhang } 2014981bb840SJunchao Zhang *b = (PetscInt)(a); 2015981bb840SJunchao Zhang PetscFunctionReturn(0); 2016981bb840SJunchao Zhang } 2017981bb840SJunchao Zhang 2018981bb840SJunchao Zhang /*@C 2019*87497f52SBarry Smith PetscBLASIntCast - casts a `PetscInt` (which may be 64 bits in size) to a `PetscBLASInt` (which may be 32 bits in size), generates an 2020*87497f52SBarry Smith error if the `PetscBLASInt` is not large enough to hold the number. 202161b0d812SBarry Smith 202261b0d812SBarry Smith Not Collective 202361b0d812SBarry Smith 202461b0d812SBarry Smith Input Parameter: 2025*87497f52SBarry Smith . a - the `PetscInt` value 202661b0d812SBarry Smith 202761b0d812SBarry Smith Output Parameter: 2028*87497f52SBarry Smith . b - the resulting `PetscBLASInt` value 202961b0d812SBarry Smith 203061b0d812SBarry Smith Level: advanced 203161b0d812SBarry Smith 20320bc7d38cSBarry Smith Notes: 20331fd49c25SBarry Smith Not available from Fortran 2034*87497f52SBarry Smith 2035f0b7f91aSBarry Smith Errors if the integer is negative since PETSc calls to BLAS/LAPACK never need to cast negative integer inputs 20361fd49c25SBarry Smith 2037db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscMPIIntCast()`, `PetscIntCast()`, `PetscCountCast()` 203861b0d812SBarry Smith @*/ 20399fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2040c5df96a5SBarry Smith { 2041c5df96a5SBarry Smith PetscFunctionBegin; 204254c59aa7SJacob Faibussowitsch *b = 0; 204354c59aa7SJacob Faibussowitsch if (PetscDefined(USE_64BIT_INDICES) && !PetscDefined(HAVE_64BIT_BLAS_INDICES)) { 204454c59aa7SJacob Faibussowitsch PetscCheck(a <= PETSC_BLAS_INT_MAX,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"%" PetscInt_FMT " is too big for BLAS/LAPACK, which is restricted to 32 bit integers. Either you have an invalidly large integer error in your code or you must ./configure PETSc with --with-64-bit-blas-indices for the case you are running",a); 204554c59aa7SJacob Faibussowitsch } 204654c59aa7SJacob Faibussowitsch PetscCheck(a >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Passing negative integer to BLAS/LAPACK routine"); 2047c73702f5SBarry Smith *b = (PetscBLASInt)(a); 2048c5df96a5SBarry Smith PetscFunctionReturn(0); 2049c5df96a5SBarry Smith } 2050c5df96a5SBarry Smith 205161b0d812SBarry Smith /*@C 2052*87497f52SBarry Smith PetscCuBLASIntCast - like `PetscBLASIntCast()`, but for `PetscCuBLASInt`. 2053eee0c0a6SToby Isaac 2054eee0c0a6SToby Isaac Not Collective 2055eee0c0a6SToby Isaac 2056eee0c0a6SToby Isaac Input Parameter: 2057*87497f52SBarry Smith . a - the `PetscInt` value 2058eee0c0a6SToby Isaac 2059eee0c0a6SToby Isaac Output Parameter: 2060*87497f52SBarry Smith . b - the resulting `PetscCuBLASInt` value 2061eee0c0a6SToby Isaac 2062eee0c0a6SToby Isaac Level: advanced 2063eee0c0a6SToby Isaac 2064eee0c0a6SToby Isaac Notes: 2065eee0c0a6SToby Isaac Errors if the integer is negative since PETSc calls to cuBLAS and friends never need to cast negative integer inputs 2066eee0c0a6SToby Isaac 2067db781477SPatrick Sanan .seealso: `PetscCuBLASInt`, `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscBLASIntCast()`, `PetscMPIIntCast()`, `PetscIntCast()` 2068eee0c0a6SToby Isaac @*/ 20699fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscCuBLASIntCast(PetscInt a,PetscCuBLASInt *b) 2070eee0c0a6SToby Isaac { 2071eee0c0a6SToby Isaac PetscFunctionBegin; 207254c59aa7SJacob Faibussowitsch *b = 0; 207354c59aa7SJacob Faibussowitsch if (PetscDefined(USE_64BIT_INDICES)) PetscCheck(a <= PETSC_CUBLAS_INT_MAX,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"%" PetscInt_FMT " is too big for cuBLAS, which is restricted to 32 bit integers.",a); 207454c59aa7SJacob Faibussowitsch PetscCheck(a >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Passing negative integer to cuBLAS routine"); 2075eee0c0a6SToby Isaac *b = (PetscCuBLASInt)(a); 2076eee0c0a6SToby Isaac PetscFunctionReturn(0); 2077eee0c0a6SToby Isaac } 2078eee0c0a6SToby Isaac 2079eee0c0a6SToby Isaac /*@C 2080*87497f52SBarry Smith PetscMPIIntCast - casts a `PetscInt` (which may be 64 bits in size) to a `PetscMPIInt` (which may be 32 bits in size), generates an 2081*87497f52SBarry Smith error if the `PetscMPIInt` is not large enough to hold the number. 208261b0d812SBarry Smith 208361b0d812SBarry Smith Not Collective 208461b0d812SBarry Smith 208561b0d812SBarry Smith Input Parameter: 2086*87497f52SBarry Smith . a - the `PetscInt` value 208761b0d812SBarry Smith 208861b0d812SBarry Smith Output Parameter: 2089*87497f52SBarry Smith . b - the resulting `PetscMPIInt` value 209061b0d812SBarry Smith 209161b0d812SBarry Smith Level: advanced 209261b0d812SBarry Smith 20931fd49c25SBarry Smith Not available from Fortran 20941fd49c25SBarry Smith 2095db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscBLASIntCast()`, `PetscIntCast()` 209661b0d812SBarry Smith @*/ 20979fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 20984dc2109aSBarry Smith { 20994dc2109aSBarry Smith PetscFunctionBegin; 210054c59aa7SJacob Faibussowitsch *b = 0; 210154c59aa7SJacob Faibussowitsch if (PetscDefined(USE_64BIT_INDICES)) PetscCheck(a <= PETSC_MPI_INT_MAX,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"%" PetscInt_FMT " is too big for MPI buffer length. We currently only support 32 bit integers",a); 2102c73702f5SBarry Smith *b = (PetscMPIInt)(a); 21034dc2109aSBarry Smith PetscFunctionReturn(0); 21044dc2109aSBarry Smith } 21054dc2109aSBarry Smith 2106bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 21072f18eb33SBarry Smith 21082f18eb33SBarry Smith /*@C 21092f18eb33SBarry Smith 2110*87497f52SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive `PetscReal` and a positive `PetscInt` and truncates the value to slightly less than the maximal possible value 21112f18eb33SBarry Smith 21122f18eb33SBarry Smith Not Collective 21132f18eb33SBarry Smith 2114d8d19677SJose E. Roman Input Parameters: 2115*87497f52SBarry Smith + a - the `PetscReal` value 21162f18eb33SBarry Smith - b - the second value 21172f18eb33SBarry Smith 2118390e1bf2SBarry Smith Returns: 2119*87497f52SBarry Smith the result as a `PetscInt` value 21202f18eb33SBarry Smith 2121*87497f52SBarry Smith Use `PetscInt64Mult()` to compute the product of two `PetscInt` as a `PetscInt64` 2122*87497f52SBarry Smith Use `PetscIntMultTruncate()` to compute the product of two positive `PetscInt` and truncate to fit a `PetscInt` 2123*87497f52SBarry Smith Use `PetscIntMultError()` to compute the product of two `PetscInt` if you wish to generate an error if the result will not fit in a `PetscInt` 21242f18eb33SBarry Smith 2125e28ce29aSPatrick Sanan Developers Note: 2126*87497f52SBarry Smith We currently assume that `PetscInt` addition can never overflow, this is obviously wrong but requires many more checks. 21272f18eb33SBarry Smith 21282f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 21292f18eb33SBarry Smith 21301fd49c25SBarry Smith Not available from Fortran 21311fd49c25SBarry Smith 21322f18eb33SBarry Smith Level: advanced 21332f18eb33SBarry Smith 2134db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscBLASIntCast()`, `PetscInt64Mult()`, `PetscIntMultError()`, `PetscIntSumError()` 21352f18eb33SBarry Smith @*/ 21369fbee547SJacob Faibussowitsch static inline PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 21372f18eb33SBarry Smith { 21385f80ce2aSJacob Faibussowitsch PetscInt64 r = (PetscInt64)(a*(PetscReal)b); 21392f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 21402f18eb33SBarry Smith return (PetscInt)r; 21412f18eb33SBarry Smith } 21422f18eb33SBarry Smith 21432f18eb33SBarry Smith /*@C 21442f18eb33SBarry Smith 2145*87497f52SBarry Smith PetscIntMultTruncate - Computes the product of two positive `PetscInt` and truncates the value to slightly less than the maximal possible value 21462f18eb33SBarry Smith 21472f18eb33SBarry Smith Not Collective 21482f18eb33SBarry Smith 2149d8d19677SJose E. Roman Input Parameters: 21502f18eb33SBarry Smith + a - the PetscInt value 21512f18eb33SBarry Smith - b - the second value 21522f18eb33SBarry Smith 2153390e1bf2SBarry Smith Returns: 2154*87497f52SBarry Smith the result as a `PetscInt` value 21552f18eb33SBarry Smith 2156*87497f52SBarry Smith Use `PetscInt64Mult()` to compute the product of two `PetscInt` as a `PetscInt64` 2157*87497f52SBarry Smith Use `PetscRealIntMultTruncate()` to compute the product of a `PetscReal` and a `PetscInt` and truncate to fit a `PetscInt` 2158*87497f52SBarry Smith Use `PetscIntMultError()` to compute the product of two `PetscInt` if you wish to generate an error if the result will not fit in a `PetscInt` 21592f18eb33SBarry Smith 21601fd49c25SBarry Smith Not available from Fortran 21611fd49c25SBarry Smith 2162*87497f52SBarry Smith Developers Note: 2163*87497f52SBarry Smith We currently assume that `PetscInt` addition can never overflow, this is obviously wrong but requires many more checks. 21642f18eb33SBarry Smith 21652f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 21662f18eb33SBarry Smith 21672f18eb33SBarry Smith Level: advanced 21682f18eb33SBarry Smith 2169db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscBLASIntCast()`, `PetscInt64Mult()`, `PetscIntMultError()`, `PetscIntSumError()` 21702f18eb33SBarry Smith @*/ 21719fbee547SJacob Faibussowitsch static inline PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 21722f18eb33SBarry Smith { 21735f80ce2aSJacob Faibussowitsch PetscInt64 r = PetscInt64Mult(a,b); 21742f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 21752f18eb33SBarry Smith return (PetscInt)r; 21762f18eb33SBarry Smith } 21772f18eb33SBarry Smith 2178f91af8c7SBarry Smith /*@C 2179f91af8c7SBarry Smith 2180*87497f52SBarry Smith PetscIntSumTruncate - Computes the sum of two positive `PetscInt` and truncates the value to slightly less than the maximal possible value 2181f91af8c7SBarry Smith 2182f91af8c7SBarry Smith Not Collective 2183f91af8c7SBarry Smith 2184d8d19677SJose E. Roman Input Parameters: 2185*87497f52SBarry Smith + a - the `PetscInt` value 2186f91af8c7SBarry Smith - b - the second value 2187f91af8c7SBarry Smith 2188390e1bf2SBarry Smith Returns: 2189*87497f52SBarry Smith the result as a `PetscInt` value 2190f91af8c7SBarry Smith 2191*87497f52SBarry Smith Use `PetscInt64Mult()` to compute the product of two `PetscInt` as a `PetscInt64` 2192*87497f52SBarry Smith Use `PetscRealIntMultTruncate()` to compute the product of a `PetscReal` and a `PetscInt` and truncate to fit a `PetscInt` 2193*87497f52SBarry Smith Use `PetscIntMultError()` to compute the product of two `PetscInt` if you wish to generate an error if the result will not fit in a `PetscInt` 2194f91af8c7SBarry Smith 2195f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2196f91af8c7SBarry Smith 2197f5f57ec0SBarry Smith Not available from Fortran 2198f5f57ec0SBarry Smith 2199f91af8c7SBarry Smith Level: advanced 2200f91af8c7SBarry Smith 2201db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscBLASIntCast()`, `PetscInt64Mult()`, `PetscIntMultError()` 2202f91af8c7SBarry Smith @*/ 22039fbee547SJacob Faibussowitsch static inline PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2204f91af8c7SBarry Smith { 22055f80ce2aSJacob Faibussowitsch PetscInt64 r = ((PetscInt64)a) + ((PetscInt64)b); 2206f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2207f91af8c7SBarry Smith return (PetscInt)r; 2208f91af8c7SBarry Smith } 2209f91af8c7SBarry Smith 22102f18eb33SBarry Smith /*@C 22112f18eb33SBarry Smith 2212*87497f52SBarry Smith PetscIntMultError - Computes the product of two positive `PetscInt` and generates an error with overflow. 22132f18eb33SBarry Smith 22142f18eb33SBarry Smith Not Collective 22152f18eb33SBarry Smith 2216d8d19677SJose E. Roman Input Parameters: 2217*87497f52SBarry Smith + a - the `PetscInt` value 22182f18eb33SBarry Smith - b - the second value 22192f18eb33SBarry Smith 2220d8d19677SJose E. Roman Output Parameter: 2221*87497f52SBarry Smith . result - the result as a `PetscInt` value, or NULL if you do not want the result, you just want to check if it overflows 22222f18eb33SBarry Smith 2223*87497f52SBarry Smith Use `PetscInt64Mult()` to compute the product of two `PetscInt` and store in a `PetscInt64` 2224*87497f52SBarry Smith Use `PetscIntMultTruncate()` to compute the product of two `PetscInt` and truncate it to fit in a `PetscInt` 22252f18eb33SBarry Smith 2226f5f57ec0SBarry Smith Not available from Fortran 2227f5f57ec0SBarry Smith 2228*87497f52SBarry Smith Developers Note: 2229*87497f52SBarry Smith We currently assume that `PetscInt` addition does not overflow, this is obviously wrong but requires many more checks. 22302f18eb33SBarry Smith 22312f18eb33SBarry Smith Level: advanced 22322f18eb33SBarry Smith 2233db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscBLASIntCast()`, `PetscIntMult64()`, `PetscIntSumError()` 22342f18eb33SBarry Smith @*/ 22359fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 22362f18eb33SBarry Smith { 2237bafee8b4SSatish Balay PetscInt64 r; 22382f18eb33SBarry Smith 22392f18eb33SBarry Smith PetscFunctionBegin; 2240bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 22412f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 22422c71b3e2SJacob Faibussowitsch PetscCheck(r <= PETSC_MAX_INT,PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integers %d %d overflow, either you have an invalidly large integer error in your code or you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 22432f18eb33SBarry Smith #endif 2244f91af8c7SBarry Smith if (result) *result = (PetscInt)r; 2245f91af8c7SBarry Smith PetscFunctionReturn(0); 2246f91af8c7SBarry Smith } 2247f91af8c7SBarry Smith 2248f91af8c7SBarry Smith /*@C 2249f91af8c7SBarry Smith 2250*87497f52SBarry Smith PetscIntSumError - Computes the sum of two positive `PetscInt` and generates an error with overflow. 2251f91af8c7SBarry Smith 2252f91af8c7SBarry Smith Not Collective 2253f91af8c7SBarry Smith 2254d8d19677SJose E. Roman Input Parameters: 2255*87497f52SBarry Smith + a - the `PetscInt` value 2256f91af8c7SBarry Smith - b - the second value 2257f91af8c7SBarry Smith 2258d8d19677SJose E. Roman Output Parameter: 2259*87497f52SBarry Smith . c - the result as a `PetscInt` value, or NULL if you do not want the result, you just want to check if it overflows 2260f91af8c7SBarry Smith 2261*87497f52SBarry Smith Use `PetscInt64Mult()` to compute the product of two 32 bit PetscInt and store in a `PetscInt64` 2262*87497f52SBarry Smith Use `PetscIntMultTruncate()` to compute the product of two `PetscInt` and truncate it to fit in a `PetscInt` 2263f91af8c7SBarry Smith 2264f5f57ec0SBarry Smith Not available from Fortran 2265f5f57ec0SBarry Smith 2266f91af8c7SBarry Smith Level: advanced 2267f91af8c7SBarry Smith 2268db781477SPatrick Sanan .seealso: `PetscBLASInt`, `PetscMPIInt`, `PetscInt`, `PetscBLASIntCast()`, `PetscInt64Mult()`, `PetscIntMultError()` 2269f91af8c7SBarry Smith @*/ 22709fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2271f91af8c7SBarry Smith { 2272bafee8b4SSatish Balay PetscInt64 r; 2273f91af8c7SBarry Smith 2274f91af8c7SBarry Smith PetscFunctionBegin; 2275bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2276f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 22772c71b3e2SJacob Faibussowitsch PetscCheck(r <= PETSC_MAX_INT,PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integers %d %d overflow, either you have an invalidly large integer error in your code or you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2278f91af8c7SBarry Smith #endif 2279f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 22802f18eb33SBarry Smith PetscFunctionReturn(0); 22812f18eb33SBarry Smith } 2282c5df96a5SBarry Smith 2283d382aafbSBarry Smith /* 22842981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2285d382aafbSBarry Smith */ 2286d382aafbSBarry Smith #if defined(hz) 2287d382aafbSBarry Smith # undef hz 2288d382aafbSBarry Smith #endif 2289d382aafbSBarry Smith 229015a5570dSLisandro Dalcin #include <limits.h> 229115a5570dSLisandro Dalcin 229215a5570dSLisandro Dalcin /* The number of bits in a byte */ 229315a5570dSLisandro Dalcin 229415a5570dSLisandro Dalcin #define PETSC_BITS_PER_BYTE CHAR_BIT 229515a5570dSLisandro Dalcin 2296d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2297d382aafbSBarry Smith # include <sys/types.h> 2298d382aafbSBarry Smith #endif 2299d382aafbSBarry Smith 2300d382aafbSBarry Smith /*MC 2301d382aafbSBarry Smith 230266d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 230366d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 230466d79e26SBarry Smith 230566d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 230666d79e26SBarry Smith 230766d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 230866d79e26SBarry Smith 230966d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 231066d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 231166d79e26SBarry Smith 231266d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 231366d79e26SBarry Smith 231466d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 231566d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 231666d79e26SBarry Smith version number (x.y.z). 231766d79e26SBarry Smith 2318*87497f52SBarry Smith `PETSC_RELEASE_DATE` is the date the x.y version was released (i.e. the version before any patch releases) 231966d79e26SBarry Smith 2320*87497f52SBarry Smith `PETSC_VERSION_DATE` is the date the x.y.z version was released 232166d79e26SBarry Smith 2322*87497f52SBarry Smith `PETSC_VERSION_GIT` is the last git commit to the repository given in the form vx.y.z-wwwww 232366d79e26SBarry Smith 2324*87497f52SBarry Smith `PETSC_VERSION_DATE_GIT` is the date of the last git commit to the repository 232566d79e26SBarry Smith 2326*87497f52SBarry Smith `PETSC_VERSION_()` is deprecated and will eventually be removed. 232766d79e26SBarry Smith 2328cbc12506SBarry Smith Level: intermediate 232966d79e26SBarry Smith 233066d79e26SBarry Smith M*/ 233166d79e26SBarry Smith 2332014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2333014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2335014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2336014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2337014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 233827710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 23395f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2340d382aafbSBarry Smith 23416a7c706bSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSortedInt(PetscInt,const PetscInt[],PetscBool*); 23426a7c706bSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSortedMPIInt(PetscInt,const PetscMPIInt[],PetscBool*); 23436a7c706bSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSortedReal(PetscInt,const PetscReal[],PetscBool*); 2344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2345ce605777SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortReverseInt(PetscInt,PetscInt[]); 234622ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2347b6a18d21SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSortedCheckDupsInt(PetscInt,const PetscInt[],PetscBool*); 2348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 2349f1cab4e1SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscCheckDupsInt(PetscInt,const PetscInt[],PetscBool*); 235060e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2351d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2355981bb840SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSortIntWithCountArray(PetscCount,PetscInt[],PetscCount[]); 23566c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 2357981bb840SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSortIntWithIntCountArrayPair(PetscCount,PetscInt[],PetscInt[],PetscCount[]); 235817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 235917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2360014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 23615569a785SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithIntArray(PetscMPIInt,PetscMPIInt[],PetscInt[]); 2362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 236317df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 236539f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2366014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2367745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 236839f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2369014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2370014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2371014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 23726c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 23736c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2374e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2375ce605777SToby Isaac PETSC_EXTERN PetscErrorCode PetscParallelSortedInt(MPI_Comm, PetscInt, const PetscInt[], PetscBool *); 2376ce605777SToby Isaac 23774d3610e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscTimSort(PetscInt,void*,size_t,int(*)(const void*,const void*,void*),void*); 2378676f2a66SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscIntSortSemiOrdered(PetscInt,PetscInt[]); 2379676f2a66SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscMPIIntSortSemiOrdered(PetscInt,PetscMPIInt[]); 2380676f2a66SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscRealSortSemiOrdered(PetscInt,PetscReal[]); 23814d3610e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscTimSortWithArray(PetscInt,void*,size_t,void*,size_t,int(*)(const void*,const void*,void*),void*); 2382676f2a66SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscIntSortSemiOrderedWithArray(PetscInt,PetscInt[],PetscInt[]); 2383676f2a66SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscMPIIntSortSemiOrderedWithArray(PetscInt,PetscMPIInt[],PetscMPIInt[]); 2384676f2a66SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PetscRealSortSemiOrderedWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2385676f2a66SJacob Faibussowitsch 2386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2388d382aafbSBarry Smith 238976bdecfbSBarry Smith /*J 2390d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2391d382aafbSBarry Smith 2392d382aafbSBarry Smith Level: beginner 2393d382aafbSBarry Smith 2394e28ce29aSPatrick Sanan Notes: 2395*87497f52SBarry Smith To use `PETSCSPRNG` or `PETSCRANDOM123` you must have ./configure PETSc 239625ccb61fSToby Isaac with the option --download-sprng or --download-random123 2397d382aafbSBarry Smith 2398db781477SPatrick Sanan .seealso: `PetscRandomSetType()`, `PetscRandom`, `PetscRandomCreate()` 239976bdecfbSBarry Smith J*/ 240019fd82e9SBarry Smith typedef const char* PetscRandomType; 2401d382aafbSBarry Smith #define PETSCRAND "rand" 2402d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2403d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2404c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 240525ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2406808ba619SStefano Zampini #define PETSCCURAND "curand" 2407d382aafbSBarry Smith 2408d382aafbSBarry Smith /* Logging support */ 2409014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2410d382aafbSBarry Smith 2411607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2412d382aafbSBarry Smith 2413d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2414140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2415d382aafbSBarry Smith 2416bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 241719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom,PetscRandomType); 2418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 241919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom,PetscRandomType*); 2420fe2efc57SMark PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,PetscObject,const char[]); 2421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2422d382aafbSBarry Smith 2423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2426808ba619SStefano Zampini PETSC_EXTERN PetscErrorCode PetscRandomGetValues(PetscRandom,PetscInt,PetscScalar*); 2427808ba619SStefano Zampini PETSC_EXTERN PetscErrorCode PetscRandomGetValuesReal(PetscRandom,PetscInt,PetscReal*); 2428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2434d382aafbSBarry Smith 2435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 244297540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 24438a10d460SHong Zhang PETSC_EXTERN PetscErrorCode PetscMkdtemp(char[]); 244497540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2445d382aafbSBarry Smith 24469fbee547SJacob Faibussowitsch static inline PetscBool PetscBinaryBigEndian(void) {long _petsc_v = 1; return ((char*)&_petsc_v)[0] ? PETSC_FALSE : PETSC_TRUE;} 244730815ce0SLisandro Dalcin 24489860990eSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscInt*,PetscDataType); 24499860990eSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscInt*,PetscDataType); 2450f253e43cSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,const void*,PetscInt,PetscDataType); 2451f253e43cSLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,const void*,PetscInt,PetscDataType); 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2459c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2460e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2461c891a504SStefano Zampini #endif 2462d382aafbSBarry Smith 2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2466d382aafbSBarry Smith 2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool); 2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 24732a2a2941SBarry Smith PETSC_EXTERN PetscErrorCode PetscWaitOnError(void); 2474d382aafbSBarry Smith 2475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2479014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2480cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2481cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2482d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2483d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2484d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2485d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 24866afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 24876afbe7ddSJed Brown MPI_Request**,MPI_Request**, 24886afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 24896afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 24906afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2491d382aafbSBarry Smith 24926145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 24936145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 24946145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 24956145cd65SJed Brown 2496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool*,PetscBool*); 2497d382aafbSBarry Smith 2498ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2499ce94432eSBarry Smith 250045487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 250145487dadSJed Brown 2502d382aafbSBarry Smith struct _n_PetscSubcomm { 2503d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2504d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2505306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 250645487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 250745487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2508708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 250945487dadSJed Brown PetscSubcommType type; 2510e5acf8a4SHong Zhang char *subcommprefix; 2511d382aafbSBarry Smith }; 2512d382aafbSBarry Smith 25139fbee547SJacob Faibussowitsch static inline MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 25149fbee547SJacob Faibussowitsch static inline MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 25159fbee547SJacob Faibussowitsch static inline MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2516014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2519014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 252065d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2521053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2522f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2523e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2524a530d236SBarry Smith PETSC_EXTERN PetscErrorCode PetscSubcommGetParent(PetscSubcomm,MPI_Comm*); 2525a530d236SBarry Smith PETSC_EXTERN PetscErrorCode PetscSubcommGetContiguousParent(PetscSubcomm,MPI_Comm*); 2526a530d236SBarry Smith PETSC_EXTERN PetscErrorCode PetscSubcommGetChild(PetscSubcomm,MPI_Comm*); 2527d382aafbSBarry Smith 25289962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 25299962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 25309962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 25319962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 25329962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 25339962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 25349962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 25359962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 25369962606eSBarry Smith 25375e71baefSBarry Smith PETSC_EXTERN PetscErrorCode PetscProcessPlacementView(PetscViewer); 25385f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommGet(MPI_Comm,PetscShmComm*); 25395f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommGlobalToLocal(PetscShmComm,PetscMPIInt,PetscMPIInt*); 25405f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommLocalToGlobal(PetscShmComm,PetscMPIInt,PetscMPIInt*); 25415f7487a0SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscShmCommGetMpiShmComm(PetscShmComm,MPI_Comm*); 25425e71baefSBarry Smith 2543a32e93adSJunchao Zhang /* routines to better support OpenMP multithreading needs of some PETSc third party libraries */ 2544a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlCreate(MPI_Comm,PetscInt,PetscOmpCtrl*); 2545a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlGetOmpComms(PetscOmpCtrl,MPI_Comm*,MPI_Comm*,PetscBool*); 2546a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlDestroy(PetscOmpCtrl*); 2547a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlBarrier(PetscOmpCtrl); 2548a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlOmpRegionOnMasterBegin(PetscOmpCtrl); 2549a32e93adSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscOmpCtrlOmpRegionOnMasterEnd(PetscOmpCtrl); 2550a32e93adSJunchao Zhang 255113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 25520f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 255313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2554137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2555137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2556137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 255713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 255813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 25590f453b92SJed Brown 2560471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2561471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2562471ecdacSJed Brown * possible. */ 25639fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,size_t count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2564d382aafbSBarry Smith 25659de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 25669de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 25679de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 25689de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 25699de0f6ecSBarry Smith 2570ace2fbaeSBarry Smith #include <stdarg.h> 2571ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 2572ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 2573ace2fbaeSBarry Smith 2574268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2575fbfcfee5SBarry Smith 25761f817a21SBarry Smith /*@C 25771f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 25781f817a21SBarry Smith 2579*87497f52SBarry Smith Not Collective - only what is registered on rank 0 of `PETSC_COMM_WORLD` will be printed 25801f817a21SBarry Smith 25811f817a21SBarry Smith Input Parameters: 25821f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 2583*87497f52SBarry Smith - set - a boolean variable initially set to `PETSC_FALSE`; this is used to insure only a single registration of the citation 25841f817a21SBarry Smith 2585850545d0SSatish Balay Level: intermediate 2586850545d0SSatish Balay 2587f5f57ec0SBarry Smith Not available from Fortran 2588f5f57ec0SBarry Smith 25891f817a21SBarry Smith Options Database: 2590063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 25911f817a21SBarry Smith @*/ 25929fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2593dff31646SBarry Smith { 2594dff31646SBarry Smith size_t len; 2595dff31646SBarry Smith char *vstring; 2596dff31646SBarry Smith 25971f817a21SBarry Smith PetscFunctionBegin; 25988d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 25999566063dSJacob Faibussowitsch PetscCall(PetscStrlen(cit,&len)); 26009566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGet(PetscCitationsList,len,&vstring)); 26019566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(vstring,cit,len)); 2602dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26031f817a21SBarry Smith PetscFunctionReturn(0); 2604dff31646SBarry Smith } 2605dff31646SBarry Smith 2606d8174014SToby Isaac PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Google has discontinued its URL shortener service") PetscErrorCode PetscURLShorten(const char [],char [], size_t c); 2607fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2608fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2609f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2610fe278a28SBarry Smith 2611f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2612f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2613b967cddfSBarry Smith 26149f4d3c52SBarry Smith PETSC_EXTERN PetscErrorCode PetscGlobusGetTransfers(MPI_Comm,const char[],char[],size_t); 26159f4d3c52SBarry Smith 261604102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2617763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2618dff31646SBarry Smith 261968e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 26205dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2621d382aafbSBarry Smith 2622b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 26239fbee547SJacob Faibussowitsch static inline unsigned int PetscStrHash(const char *str) 2624df05ca09SBarry Smith { 2625df05ca09SBarry Smith unsigned int c,hash = 5381; 2626df05ca09SBarry Smith 2627503e1a2cSLisandro Dalcin while ((c = (unsigned int)*str++)) hash = ((hash << 5) + hash) + c; /* hash * 33 + c */ 2628df05ca09SBarry Smith return hash; 2629df05ca09SBarry Smith } 263077a5e07dSBarry Smith 263177a5e07dSBarry Smith /*MC 2632*87497f52SBarry Smith MPIU_Allreduce - a PETSc replacement for `MPI_Allreduce()` that tries to determine if the call from all the MPI ranks occur from the 2633*87497f52SBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI ranks follow different code paths 2634*87497f52SBarry Smith resulting in inconsistent and incorrect calls to `MPI_Allreduce()`. 263577a5e07dSBarry Smith 2636d083f849SBarry Smith Collective 263777a5e07dSBarry Smith 263877a5e07dSBarry Smith Synopsis: 263977a5e07dSBarry Smith #include <petscsys.h> 264077a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 264177a5e07dSBarry Smith 264277a5e07dSBarry Smith Input Parameters: 2643df05ca09SBarry Smith + a - pointer to the input data to be reduced 2644df05ca09SBarry Smith . c - the number of MPI data items in a and b 2645*87497f52SBarry Smith . d - the MPI datatype, for example `MPI_INT` 2646*87497f52SBarry Smith . e - the MPI operation, for example `MPI_SUM` 2647df05ca09SBarry Smith - fcomm - the MPI communicator on which the operation occurs 264877a5e07dSBarry Smith 264977a5e07dSBarry Smith Output Parameter: 2650df05ca09SBarry Smith . b - the reduced values 265177a5e07dSBarry Smith 2652e28ce29aSPatrick Sanan Notes: 2653*87497f52SBarry Smith In optimized mode this directly calls `MPI_Allreduce()` 265477a5e07dSBarry Smith 2655df05ca09SBarry Smith This is defined as a macro that can return error codes internally so it cannot be used in a subroutine that returns void. 2656df05ca09SBarry Smith 2657*87497f52SBarry Smith The error code this returns should be checked with `PetscCall()` even though it looks like an MPI function because it always returns PETSc error codes 2658df05ca09SBarry Smith 265977a5e07dSBarry Smith Level: developer 266077a5e07dSBarry Smith 2661db781477SPatrick Sanan .seealso: `MPI_Allreduce()` 266277a5e07dSBarry Smith M*/ 26631c2dc1cbSBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) PetscMacroReturnStandard( \ 2664df05ca09SBarry Smith PetscMPIInt a_b1[6],a_b2[6]; \ 26653ca90d2dSJacob Faibussowitsch int _mpiu_allreduce_c_int = (int)c; \ 2666df05ca09SBarry Smith a_b1[0] = -(PetscMPIInt)__LINE__; a_b1[1] = -a_b1[0]; \ 2667df05ca09SBarry Smith a_b1[2] = -(PetscMPIInt)PetscStrHash(PETSC_FUNCTION_NAME); a_b1[3] = -a_b1[2]; \ 2668df05ca09SBarry Smith a_b1[4] = -(PetscMPIInt)(c); a_b1[5] = -a_b1[4]; \ 26699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(a_b1,a_b2,6,MPI_INT,MPI_MAX,fcomm)); \ 26702c71b3e2SJacob Faibussowitsch PetscCheck(-a_b2[0] == a_b2[1],PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPI_Allreduce() called in different locations (code lines) on different processors"); \ 26712c71b3e2SJacob Faibussowitsch PetscCheck(-a_b2[2] == a_b2[3],PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPI_Allreduce() called in different locations (functions) on different processors"); \ 26722c71b3e2SJacob Faibussowitsch PetscCheck(-a_b2[4] == a_b2[5],PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPI_Allreduce() called with different counts %d on different processors",_mpiu_allreduce_c_int); \ 26739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce((a),(b),(c),d,e,(fcomm))); \ 26745f80ce2aSJacob Faibussowitsch ) 2675b2566f29SBarry Smith #else 26761c2dc1cbSBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) PetscMacroReturnStandard(PetscCallMPI(MPI_Allreduce((a),(b),(c),d,e,(fcomm)))) 2677b2566f29SBarry Smith #endif 2678b2566f29SBarry Smith 2679b674149eSJunchao Zhang #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) 26808198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_allocate_shared(MPI_Aint,PetscMPIInt,MPI_Info,MPI_Comm,void*,MPI_Win*); 26818198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_shared_query(MPI_Win,PetscMPIInt,MPI_Aint*,PetscMPIInt*,void*); 26822f065d89SBarry Smith #endif 26838198064fSBarry Smith 2684cd88fca5SStefano Zampini /* this is a vile hack */ 2685cd88fca5SStefano Zampini #if defined(PETSC_HAVE_NECMPI) 2686961fb248SStefano Zampini #if !defined(PETSC_NECMPI_VERSION_MAJOR) || \ 2687961fb248SStefano Zampini !defined(PETSC_NECMPI_VERSION_MINOR) || \ 2688961fb248SStefano Zampini PETSC_NECMPI_VERSION_MAJOR < 2 || \ 2689961fb248SStefano Zampini (PETSC_NECMPI_VERSION_MAJOR == 2 && PETSC_NECMPI_VERSION_MINOR < 18) 2690cd88fca5SStefano Zampini #define MPI_Type_free(a) (*(a) = MPI_DATATYPE_NULL,0); 2691cd88fca5SStefano Zampini #endif 2692961fb248SStefano Zampini #endif 2693cd88fca5SStefano Zampini 269412801b39SBarry Smith /* 269560fbe2beSVaclav Hapla List of external packages and queries on it 269660fbe2beSVaclav Hapla */ 269760fbe2beSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscHasExternalPackage(const char[],PetscBool*); 269860fbe2beSVaclav Hapla 2699a52b435bSMark Adams /* 2700a52b435bSMark Adams OpenMP support 2701a52b435bSMark Adams */ 2702a52b435bSMark Adams #if defined(_OPENMP) 2703a52b435bSMark Adams #define PetscPragmaOMP(...) _Pragma(PetscStringize(omp __VA_ARGS__)) 2704a52b435bSMark Adams #else // no OpenMP so no threads 2705a52b435bSMark Adams #define PetscPragmaOMP(...) 2706a52b435bSMark Adams #endif 2707a52b435bSMark Adams 2708f1f2ae84SBarry Smith /* this cannot go here because it may be in a different shared library */ 2709f1f2ae84SBarry Smith PETSC_EXTERN PetscErrorCode PCMPIServerBegin(void); 2710f1f2ae84SBarry Smith PETSC_EXTERN PetscErrorCode PCMPIServerEnd(void); 2711f1f2ae84SBarry Smith PETSC_EXTERN PetscErrorCode PCMPICommsDestroy(void); 2712d382aafbSBarry Smith #endif 2713