1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ed938b00SJed Brown #if defined(__cplusplus) 44ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 45ed938b00SJed Brown #else 46ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 47ed938b00SJed Brown #endif 48ed938b00SJed Brown 49ed938b00SJed Brown #if defined(__cplusplus) 50ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 51ed938b00SJed Brown #else 52ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 53ed938b00SJed Brown #endif 54ed938b00SJed Brown 55ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 56014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 57014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 5821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 59014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 60014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 61014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 6221f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 63d382aafbSBarry Smith #else 64014dd563SJed Brown # define PETSC_DLLEXPORT 65014dd563SJed Brown # define PETSC_DLLIMPORT 6621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #endif 68014dd563SJed Brown 69014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 70014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 71014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 72014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 73014dd563SJed Brown #endif 74014dd563SJed Brown 752c280183SJed Brown #if defined(__cplusplus) 76014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 77638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 7821f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #else 80014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 81638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 826258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 83d382aafbSBarry Smith #endif 8427710113SBarry Smith 852c8e378dSBarry Smith #include <petscversion.h> 86301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 87d382aafbSBarry Smith 88d382aafbSBarry Smith /* ========================================================================== */ 89d382aafbSBarry Smith 90d382aafbSBarry Smith /* 91d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 92d382aafbSBarry Smith 93d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 94d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 95d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 96d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 97d382aafbSBarry Smith mpicxx.h directly in their code 98d382aafbSBarry Smith */ 99fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 100d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 101fa9e63e2SJed Brown #endif 102fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 103d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 104fa9e63e2SJed Brown #endif 1052c8e378dSBarry Smith #include <mpi.h> 10665013866SBarry Smith 107d382aafbSBarry Smith /* 108a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 109a7886beaSBarry Smith This usually happens because 110a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 111a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 112a7886beaSBarry Smith */ 113a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 114a7886beaSBarry Smith # if !defined(__MPIUNI_H) 115a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 116a7886beaSBarry Smith # endif 117a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 118a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 119a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 120a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 121a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 122a7886beaSBarry Smith # endif 123a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 124a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 125a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 126c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 127c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 128a7886beaSBarry Smith # endif 129a7886beaSBarry Smith #endif 130a7886beaSBarry Smith 131a7886beaSBarry Smith /* 1322981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 133d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 134d382aafbSBarry Smith */ 135d382aafbSBarry Smith #include <stdio.h> 136d382aafbSBarry Smith 137d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 138d382aafbSBarry Smith #if !defined(MPIAPI) 139d382aafbSBarry Smith #define MPIAPI 140d382aafbSBarry Smith #endif 141d382aafbSBarry Smith 142894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 143894dd566SJed Brown #if defined(__has_attribute) 144894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 145894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1468ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1478ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 148894dd566SJed Brown # endif 149894dd566SJed Brown #endif 150894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 151894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1528ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1538ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 154894dd566SJed Brown #endif 155b3506946SBarry Smith 156d382aafbSBarry Smith /*MC 1571957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 158d382aafbSBarry Smith 159d382aafbSBarry Smith Level: beginner 160d382aafbSBarry Smith 161d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 162d382aafbSBarry Smith M*/ 163d382aafbSBarry Smith typedef int PetscErrorCode; 164d382aafbSBarry Smith 165d382aafbSBarry Smith /*MC 166d382aafbSBarry Smith 167503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 168d382aafbSBarry Smith 1691957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1701957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 1711957e957SBarry Smith 1721957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 1731957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 1741957e957SBarry Smith 1751957e957SBarry Smith Level: developer 176d382aafbSBarry Smith 1770700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 178d382aafbSBarry Smith M*/ 1790700a824SBarry Smith typedef int PetscClassId; 180d382aafbSBarry Smith 181d382aafbSBarry Smith 182d382aafbSBarry Smith /*MC 183d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 184d382aafbSBarry Smith 185d382aafbSBarry Smith Level: intermediate 186d382aafbSBarry Smith 187d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1883b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 189d382aafbSBarry Smith 1904dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1912981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 192d382aafbSBarry Smith 193d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 194d382aafbSBarry Smith 195d382aafbSBarry Smith M*/ 196d382aafbSBarry Smith typedef int PetscMPIInt; 197d382aafbSBarry Smith 198d382aafbSBarry Smith /*MC 199d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 200d382aafbSBarry Smith 201d382aafbSBarry Smith Level: intermediate 202d382aafbSBarry Smith 203d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 204d382aafbSBarry Smith M*/ 205d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2065a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 207d382aafbSBarry Smith 208fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 209fab38c73SJed Brown #include <stdint.h> 210fab38c73SJed Brown #endif 211fab38c73SJed Brown 212d382aafbSBarry Smith /*MC 213d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2143b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 215d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 216d382aafbSBarry Smith 217d382aafbSBarry Smith Level: intermediate 218d382aafbSBarry Smith 219d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 220d382aafbSBarry Smith M*/ 221fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 222fab38c73SJed Brown typedef int64_t Petsc64bitInt; 223fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 224f505b413SSatish Balay typedef long long Petsc64bitInt; 225f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 226236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 227236ed0a3SSatish Balay #else 228f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 229236ed0a3SSatish Balay #endif 230d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 231236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 23241860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 233fab38c73SJed Brown # define MPIU_INT MPI_INT64_T 234fab38c73SJed Brown # else 235d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 236fab38c73SJed Brown # endif 237d382aafbSBarry Smith #else 238d382aafbSBarry Smith typedef int PetscInt; 239d382aafbSBarry Smith #define MPIU_INT MPI_INT 240d382aafbSBarry Smith #endif 241e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 242e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 243e56f5c9eSBarry Smith #else 244e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 245e56f5c9eSBarry Smith #endif 246236ed0a3SSatish Balay 247d382aafbSBarry Smith 248702bc34aSSatish Balay /*MC 249702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 250702bc34aSSatish Balay 251702bc34aSSatish Balay Level: intermediate 252702bc34aSSatish Balay 253702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 254702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 255702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 256702bc34aSSatish Balay 257c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2582981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 259702bc34aSSatish Balay 2602981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 261702bc34aSSatish Balay if you run ./configure with the option 262702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2632981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2642981ebdbSBarry Smith 2652981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2662981ebdbSBarry Smith 2672981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 268702bc34aSSatish Balay 269702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 270702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 271702bc34aSSatish Balay 272702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 273702bc34aSSatish Balay 274702bc34aSSatish Balay M*/ 275702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 276702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 277702bc34aSSatish Balay #else 278702bc34aSSatish Balay typedef int PetscBLASInt; 279702bc34aSSatish Balay #endif 280702bc34aSSatish Balay 28158b60935SBarry Smith /*EC 28258b60935SBarry Smith 2832981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 28458b60935SBarry Smith 28558b60935SBarry Smith Level: advanced 28658b60935SBarry Smith 28758b60935SBarry Smith .seealso: PetscObjectSetPrecision() 28858b60935SBarry Smith E*/ 28958b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 290014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 29158b60935SBarry Smith 292503cfb0cSBarry Smith /* 293503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 294503cfb0cSBarry Smith */ 295d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 296adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 297d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 298adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 299d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 300adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 301d382aafbSBarry Smith #else 302d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 303d382aafbSBarry Smith #endif 304d382aafbSBarry Smith 305d382aafbSBarry Smith 306d382aafbSBarry Smith /* 307d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 308d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 309d382aafbSBarry Smith */ 310014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 311d382aafbSBarry Smith 312d382aafbSBarry Smith /* 313d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 314d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 315d382aafbSBarry Smith */ 316014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 317d382aafbSBarry Smith 318d382aafbSBarry Smith /*MC 319d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 320d382aafbSBarry Smith 321d382aafbSBarry Smith Synopsis: 322aaa7dc30SBarry Smith #include <petscsys.h> 323ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 324d382aafbSBarry Smith 325eca87e8dSBarry Smith Not Collective 326eca87e8dSBarry Smith 327d382aafbSBarry Smith Input Parameters: 328d382aafbSBarry Smith . cond - condition or expression 329d382aafbSBarry Smith 330d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 331d382aafbSBarry Smith branch is unlikely. 332d382aafbSBarry Smith 333d382aafbSBarry Smith Level: advanced 334d382aafbSBarry Smith 335d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 336d382aafbSBarry Smith M*/ 337d382aafbSBarry Smith 338d382aafbSBarry Smith /*MC 339d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 340d382aafbSBarry Smith 341d382aafbSBarry Smith Synopsis: 342aaa7dc30SBarry Smith #include <petscsys.h> 343ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 344d382aafbSBarry Smith 345eca87e8dSBarry Smith Not Collective 346eca87e8dSBarry Smith 347d382aafbSBarry Smith Input Parameters: 348d382aafbSBarry Smith . cond - condition or expression 349d382aafbSBarry Smith 350d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 351d382aafbSBarry Smith branch is likely. 352d382aafbSBarry Smith 353d382aafbSBarry Smith Level: advanced 354d382aafbSBarry Smith 355d382aafbSBarry Smith .seealso: PetscUnlikely() 356d382aafbSBarry Smith M*/ 357d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 358d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 359d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 360d382aafbSBarry Smith #else 361cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 362cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 363d382aafbSBarry Smith #endif 364d382aafbSBarry Smith 365d382aafbSBarry Smith /* 366d382aafbSBarry Smith Declare extern C stuff after including external header files 367d382aafbSBarry Smith */ 368d382aafbSBarry Smith 369d382aafbSBarry Smith 370d382aafbSBarry Smith /* 371d382aafbSBarry Smith Basic PETSc constants 372d382aafbSBarry Smith */ 373d382aafbSBarry Smith 374d382aafbSBarry Smith /*E 375ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 376d382aafbSBarry Smith 377d382aafbSBarry Smith Level: beginner 378d382aafbSBarry Smith 379ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 38034e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 38134e82e7dSBarry Smith 382d382aafbSBarry Smith E*/ 383ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3846a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3855a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 38670b3c8c7SBarry Smith 3878b49ba18SBarry Smith /* 3888b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 3898b49ba18SBarry Smith */ 3908b49ba18SBarry Smith #include <petscmath.h> 3918b49ba18SBarry Smith 39270b3c8c7SBarry Smith /*E 39370b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 39470b3c8c7SBarry Smith 39570b3c8c7SBarry Smith Level: beginner 39670b3c8c7SBarry Smith 39770b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 39870b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 39970b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 40070b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 40170b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 40270b3c8c7SBarry Smith 40370b3c8c7SBarry Smith E*/ 40470b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4056a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 406d382aafbSBarry Smith 407d382aafbSBarry Smith /*MC 408ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 409d382aafbSBarry Smith 410d382aafbSBarry Smith Level: beginner 411d382aafbSBarry Smith 412d382aafbSBarry Smith Note: Zero integer 413d382aafbSBarry Smith 414ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 415d382aafbSBarry Smith M*/ 416d382aafbSBarry Smith 417d382aafbSBarry Smith /*MC 418ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 419d382aafbSBarry Smith 420d382aafbSBarry Smith Level: beginner 421d382aafbSBarry Smith 422d382aafbSBarry Smith Note: Nonzero integer 423d382aafbSBarry Smith 424ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 425d382aafbSBarry Smith M*/ 426d382aafbSBarry Smith 427d382aafbSBarry Smith /*MC 4280298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 429d382aafbSBarry Smith 430d382aafbSBarry Smith Level: beginner 431d382aafbSBarry Smith 432d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 433d382aafbSBarry Smith some default 434d382aafbSBarry Smith 435d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 436503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 437d382aafbSBarry Smith 438d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 439d382aafbSBarry Smith 440d382aafbSBarry Smith M*/ 4413bcbec90SJed Brown #define PETSC_NULL NULL 442d382aafbSBarry Smith 443d382aafbSBarry Smith /*MC 4440298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 445d382aafbSBarry Smith 446d382aafbSBarry Smith Level: beginner 447d382aafbSBarry Smith 448d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 449d382aafbSBarry Smith some default 450d382aafbSBarry Smith 451d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 452d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 453d382aafbSBarry Smith 454d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 455d382aafbSBarry Smith 456d382aafbSBarry Smith M*/ 4570298fd71SBarry Smith #define PETSC_IGNORE NULL 458d382aafbSBarry Smith 459d382aafbSBarry Smith /*MC 460557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 461557d4da8SBarry Smith where you wish PETSc to use the default. 462557d4da8SBarry Smith 463557d4da8SBarry Smith Level: beginner 464557d4da8SBarry Smith 465557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 466557d4da8SBarry Smith 467557d4da8SBarry Smith M*/ 468557d4da8SBarry Smith #define PETSC_DECIDE -1 469557d4da8SBarry Smith 470557d4da8SBarry Smith /*MC 471d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 472d382aafbSBarry Smith where you wish PETSc to compute the required value. 473d382aafbSBarry Smith 474d382aafbSBarry Smith Level: beginner 475d382aafbSBarry Smith 476557d4da8SBarry Smith 477557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 478557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 479557d4da8SBarry Smith 4800298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 481d382aafbSBarry Smith 482d382aafbSBarry Smith M*/ 483d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 484d382aafbSBarry Smith 485d382aafbSBarry Smith /*MC 486557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 487557d4da8SBarry Smith where you wish PETSc to use the default. 488557d4da8SBarry Smith 489557d4da8SBarry Smith Level: beginner 490557d4da8SBarry Smith 4912d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 492557d4da8SBarry Smith 4930298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 494557d4da8SBarry Smith 495557d4da8SBarry Smith M*/ 496557d4da8SBarry Smith #define PETSC_DEFAULT -2 497557d4da8SBarry Smith 498557d4da8SBarry Smith /*MC 499d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 500d382aafbSBarry Smith all the processs that PETSc knows about. 501d382aafbSBarry Smith 502d382aafbSBarry Smith Level: beginner 503d382aafbSBarry Smith 504d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 505d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 506d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 507d382aafbSBarry Smith PetscInitialize() 508d382aafbSBarry Smith 509d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 510d382aafbSBarry Smith 511d382aafbSBarry Smith M*/ 512014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 513d382aafbSBarry Smith 514d382aafbSBarry Smith /*MC 515503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 516d382aafbSBarry Smith 517d382aafbSBarry Smith Level: beginner 518d382aafbSBarry Smith 519d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 520d382aafbSBarry Smith 521d382aafbSBarry Smith M*/ 522d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 523d382aafbSBarry Smith 524d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 525014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 526014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 527014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5284cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 529d382aafbSBarry Smith 530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 533d382aafbSBarry Smith 534d382aafbSBarry Smith /*MC 535d382aafbSBarry Smith PetscMalloc - Allocates memory 536d382aafbSBarry Smith 537eca87e8dSBarry Smith Synopsis: 538aaa7dc30SBarry Smith #include <petscsys.h> 539eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 540eca87e8dSBarry Smith 541eca87e8dSBarry Smith Not Collective 542eca87e8dSBarry Smith 543d382aafbSBarry Smith Input Parameter: 544d382aafbSBarry Smith . m - number of bytes to allocate 545d382aafbSBarry Smith 546d382aafbSBarry Smith Output Parameter: 547d382aafbSBarry Smith . result - memory allocated 548d382aafbSBarry Smith 549d382aafbSBarry Smith Level: beginner 550d382aafbSBarry Smith 55149d7da52SJed Brown Notes: 55249d7da52SJed Brown Memory is always allocated at least double aligned 553d382aafbSBarry Smith 55449d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 555d382aafbSBarry Smith 556d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 557d382aafbSBarry Smith 558d382aafbSBarry Smith Concepts: memory allocation 559d382aafbSBarry Smith 560d382aafbSBarry Smith M*/ 56149d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 562d382aafbSBarry Smith 563d382aafbSBarry Smith /*MC 564503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 565d382aafbSBarry Smith 566d382aafbSBarry Smith Synopsis: 567aaa7dc30SBarry Smith #include <petscsys.h> 568d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 569d382aafbSBarry Smith 570eca87e8dSBarry Smith Not Collective 571eca87e8dSBarry Smith 572eca87e8dSBarry Smith Input Parameters: 573eca87e8dSBarry Smith . addr - address to align (any pointer type) 574eca87e8dSBarry Smith 575d382aafbSBarry Smith Level: developer 576d382aafbSBarry Smith 577d382aafbSBarry Smith .seealso: PetscMallocAlign() 578d382aafbSBarry Smith 579d382aafbSBarry Smith Concepts: memory allocation 580d382aafbSBarry Smith M*/ 581d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 582d382aafbSBarry Smith 583d382aafbSBarry Smith /*MC 584785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 585d382aafbSBarry Smith 586eca87e8dSBarry Smith Synopsis: 587aaa7dc30SBarry Smith #include <petscsys.h> 588785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 589785e854fSJed Brown 590785e854fSJed Brown Not Collective 591785e854fSJed Brown 592785e854fSJed Brown Input Parameter: 593785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 594785e854fSJed Brown 595785e854fSJed Brown Output Parameter: 596785e854fSJed Brown . r1 - memory allocated in first chunk 597785e854fSJed Brown 598785e854fSJed Brown Level: developer 599785e854fSJed Brown 6001795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 601785e854fSJed Brown 602785e854fSJed Brown Concepts: memory allocation 603785e854fSJed Brown 604785e854fSJed Brown M*/ 605e1287589SMatthew G. Knepley #define PetscMalloc1(m1,r1) ((m1) ? PetscMalloc((m1)*sizeof(**(r1)),r1) : (*(r1) = 0,0)) 606785e854fSJed Brown 607785e854fSJed Brown /*MC 6081795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6091795a4d1SJed Brown 6101795a4d1SJed Brown Synopsis: 611aaa7dc30SBarry Smith #include <petscsys.h> 6121795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6131795a4d1SJed Brown 6141795a4d1SJed Brown Not Collective 6151795a4d1SJed Brown 6161795a4d1SJed Brown Input Parameter: 6171795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6181795a4d1SJed Brown 6191795a4d1SJed Brown Output Parameter: 6201795a4d1SJed Brown . r1 - memory allocated in first chunk 6211795a4d1SJed Brown 6221795a4d1SJed Brown Level: developer 6231795a4d1SJed Brown 6241795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6251795a4d1SJed Brown 6261795a4d1SJed Brown Concepts: memory allocation 6271795a4d1SJed Brown 6281795a4d1SJed Brown M*/ 6291795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6301795a4d1SJed Brown 6311795a4d1SJed Brown /*MC 632dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 633d382aafbSBarry Smith 634eca87e8dSBarry Smith Synopsis: 635aaa7dc30SBarry Smith #include <petscsys.h> 636dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 637eca87e8dSBarry Smith 638eca87e8dSBarry Smith Not Collective 639eca87e8dSBarry Smith 640d382aafbSBarry Smith Input Parameter: 641d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 642dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 643d382aafbSBarry Smith 644d382aafbSBarry Smith Output Parameter: 645d382aafbSBarry Smith + r1 - memory allocated in first chunk 646d382aafbSBarry Smith - r2 - memory allocated in second chunk 647d382aafbSBarry Smith 648d382aafbSBarry Smith Level: developer 649d382aafbSBarry Smith 6501795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 651d382aafbSBarry Smith 652d382aafbSBarry Smith Concepts: memory allocation 653d382aafbSBarry Smith 654d382aafbSBarry Smith M*/ 65520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6561d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 657d382aafbSBarry Smith #else 658ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 659ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6603589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 661d382aafbSBarry Smith #endif 662d382aafbSBarry Smith 663d382aafbSBarry Smith /*MC 6641795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 665d382aafbSBarry Smith 666eca87e8dSBarry Smith Synopsis: 667aaa7dc30SBarry Smith #include <petscsys.h> 6681795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 669eca87e8dSBarry Smith 670eca87e8dSBarry Smith Not Collective 671eca87e8dSBarry Smith 672d382aafbSBarry Smith Input Parameter: 673d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6741795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6751795a4d1SJed Brown 6761795a4d1SJed Brown Output Parameter: 6771795a4d1SJed Brown + r1 - memory allocated in first chunk 6781795a4d1SJed Brown - r2 - memory allocated in second chunk 6791795a4d1SJed Brown 6801795a4d1SJed Brown Level: developer 6811795a4d1SJed Brown 6821795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 6831795a4d1SJed Brown 6841795a4d1SJed Brown Concepts: memory allocation 6851795a4d1SJed Brown M*/ 6861795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 6871795a4d1SJed Brown 6881795a4d1SJed Brown /*MC 689dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 690d382aafbSBarry Smith 691d382aafbSBarry Smith Synopsis: 692aaa7dc30SBarry Smith #include <petscsys.h> 693dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 694d382aafbSBarry Smith 695d382aafbSBarry Smith Not Collective 696d382aafbSBarry Smith 697d382aafbSBarry Smith Input Parameter: 698d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 699d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 700dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 701d382aafbSBarry Smith 702d382aafbSBarry Smith Output Parameter: 703d382aafbSBarry Smith + r1 - memory allocated in first chunk 704d382aafbSBarry Smith . r2 - memory allocated in second chunk 705d382aafbSBarry Smith - r3 - memory allocated in third chunk 706d382aafbSBarry Smith 707d382aafbSBarry Smith Level: developer 708d382aafbSBarry Smith 7091795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 710d382aafbSBarry Smith 711d382aafbSBarry Smith Concepts: memory allocation 712d382aafbSBarry Smith 713d382aafbSBarry Smith M*/ 71420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7151d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 716d382aafbSBarry Smith #else 717ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 718278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7193589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 720d382aafbSBarry Smith #endif 721d382aafbSBarry Smith 722d382aafbSBarry Smith /*MC 7231795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 724d382aafbSBarry Smith 725eca87e8dSBarry Smith Synopsis: 726aaa7dc30SBarry Smith #include <petscsys.h> 7271795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 728eca87e8dSBarry Smith 729eca87e8dSBarry Smith Not Collective 730eca87e8dSBarry Smith 731d382aafbSBarry Smith Input Parameter: 732d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 733d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7341795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7351795a4d1SJed Brown 7361795a4d1SJed Brown Output Parameter: 7371795a4d1SJed Brown + r1 - memory allocated in first chunk 7381795a4d1SJed Brown . r2 - memory allocated in second chunk 7391795a4d1SJed Brown - r3 - memory allocated in third chunk 7401795a4d1SJed Brown 7411795a4d1SJed Brown Level: developer 7421795a4d1SJed Brown 7431795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7441795a4d1SJed Brown 7451795a4d1SJed Brown Concepts: memory allocation 7461795a4d1SJed Brown M*/ 7471795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7481795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7491795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7501795a4d1SJed Brown 7511795a4d1SJed Brown /*MC 752dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 753d382aafbSBarry Smith 754d382aafbSBarry Smith Synopsis: 755aaa7dc30SBarry Smith #include <petscsys.h> 756dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 757d382aafbSBarry Smith 758d382aafbSBarry Smith Not Collective 759d382aafbSBarry Smith 760d382aafbSBarry Smith Input Parameter: 761d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 762d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 763d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 764dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 765d382aafbSBarry Smith 766d382aafbSBarry Smith Output Parameter: 767d382aafbSBarry Smith + r1 - memory allocated in first chunk 768d382aafbSBarry Smith . r2 - memory allocated in second chunk 769d382aafbSBarry Smith . r3 - memory allocated in third chunk 770d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 771d382aafbSBarry Smith 772d382aafbSBarry Smith Level: developer 773d382aafbSBarry Smith 7741795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 775d382aafbSBarry Smith 776d382aafbSBarry Smith Concepts: memory allocation 777d382aafbSBarry Smith 778d382aafbSBarry Smith M*/ 77920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7801d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 781d382aafbSBarry Smith #else 782dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 783ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 784278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 7853589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 786d382aafbSBarry Smith #endif 787d382aafbSBarry Smith 788d382aafbSBarry Smith /*MC 7891795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 790d382aafbSBarry Smith 791eca87e8dSBarry Smith Synopsis: 792aaa7dc30SBarry Smith #include <petscsys.h> 7931795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 794eca87e8dSBarry Smith 795eca87e8dSBarry Smith Not Collective 796eca87e8dSBarry Smith 797d382aafbSBarry Smith Input Parameter: 798d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 799d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 800d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8011795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8021795a4d1SJed Brown 8031795a4d1SJed Brown Output Parameter: 8041795a4d1SJed Brown + r1 - memory allocated in first chunk 8051795a4d1SJed Brown . r2 - memory allocated in second chunk 8061795a4d1SJed Brown . r3 - memory allocated in third chunk 8071795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8081795a4d1SJed Brown 8091795a4d1SJed Brown Level: developer 8101795a4d1SJed Brown 8111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8121795a4d1SJed Brown 8131795a4d1SJed Brown Concepts: memory allocation 8141795a4d1SJed Brown 8151795a4d1SJed Brown M*/ 8161795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8171795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8181795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8191795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8201795a4d1SJed Brown 8211795a4d1SJed Brown /*MC 822dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 823d382aafbSBarry Smith 824d382aafbSBarry Smith Synopsis: 825aaa7dc30SBarry Smith #include <petscsys.h> 826dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 827d382aafbSBarry Smith 828d382aafbSBarry Smith Not Collective 829d382aafbSBarry Smith 830d382aafbSBarry Smith Input Parameter: 831d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 832d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 833d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 834d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 835dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 836d382aafbSBarry Smith 837d382aafbSBarry Smith Output Parameter: 838d382aafbSBarry Smith + r1 - memory allocated in first chunk 839d382aafbSBarry Smith . r2 - memory allocated in second chunk 840d382aafbSBarry Smith . r3 - memory allocated in third chunk 841d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 842d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 843d382aafbSBarry Smith 844d382aafbSBarry Smith Level: developer 845d382aafbSBarry Smith 8461795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 847d382aafbSBarry Smith 848d382aafbSBarry Smith Concepts: memory allocation 849d382aafbSBarry Smith 850d382aafbSBarry Smith M*/ 85120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8521d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 853d382aafbSBarry Smith #else 854dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 855ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 856278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8573589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 858d382aafbSBarry Smith #endif 859d382aafbSBarry Smith 860d382aafbSBarry Smith /*MC 8611795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 862d382aafbSBarry Smith 863eca87e8dSBarry Smith Synopsis: 864aaa7dc30SBarry Smith #include <petscsys.h> 8651795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 866eca87e8dSBarry Smith 867eca87e8dSBarry Smith Not Collective 868eca87e8dSBarry Smith 869d382aafbSBarry Smith Input Parameter: 870d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 871d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 872d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 873d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 8741795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8751795a4d1SJed Brown 8761795a4d1SJed Brown Output Parameter: 8771795a4d1SJed Brown + r1 - memory allocated in first chunk 8781795a4d1SJed Brown . r2 - memory allocated in second chunk 8791795a4d1SJed Brown . r3 - memory allocated in third chunk 8801795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8811795a4d1SJed Brown - r5 - memory allocated in fifth chunk 8821795a4d1SJed Brown 8831795a4d1SJed Brown Level: developer 8841795a4d1SJed Brown 8851795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 8861795a4d1SJed Brown 8871795a4d1SJed Brown Concepts: memory allocation 8881795a4d1SJed Brown 8891795a4d1SJed Brown M*/ 8901795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8911795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8921795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8931795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 894d382aafbSBarry Smith 895d382aafbSBarry Smith /*MC 896dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 897d382aafbSBarry Smith 898d382aafbSBarry Smith Synopsis: 899aaa7dc30SBarry Smith #include <petscsys.h> 900dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 901d382aafbSBarry Smith 902d382aafbSBarry Smith Not Collective 903d382aafbSBarry Smith 904d382aafbSBarry Smith Input Parameter: 905d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 906d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 907d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 908d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 909d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 910dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 911d382aafbSBarry Smith 912d382aafbSBarry Smith Output Parameter: 913d382aafbSBarry Smith + r1 - memory allocated in first chunk 914d382aafbSBarry Smith . r2 - memory allocated in second chunk 915d382aafbSBarry Smith . r3 - memory allocated in third chunk 916d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 917d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 918d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 919d382aafbSBarry Smith 920d382aafbSBarry Smith Level: developer 921d382aafbSBarry Smith 9221795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 923d382aafbSBarry Smith 924d382aafbSBarry Smith Concepts: memory allocation 925d382aafbSBarry Smith 926d382aafbSBarry Smith M*/ 92720a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9281d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 929d382aafbSBarry Smith #else 930dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 931ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 932278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9333589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 934d382aafbSBarry Smith #endif 935d382aafbSBarry Smith 936d382aafbSBarry Smith /*MC 9371795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 938d382aafbSBarry Smith 939eca87e8dSBarry Smith Synopsis: 940aaa7dc30SBarry Smith #include <petscsys.h> 9411795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 942eca87e8dSBarry Smith 943eca87e8dSBarry Smith Not Collective 944eca87e8dSBarry Smith 945d382aafbSBarry Smith Input Parameter: 946d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 947d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 948d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 949d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 950d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9511795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9521795a4d1SJed Brown 9531795a4d1SJed Brown Output Parameter: 9541795a4d1SJed Brown + r1 - memory allocated in first chunk 9551795a4d1SJed Brown . r2 - memory allocated in second chunk 9561795a4d1SJed Brown . r3 - memory allocated in third chunk 9571795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9581795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9591795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9601795a4d1SJed Brown 9611795a4d1SJed Brown Level: developer 9621795a4d1SJed Brown 9631795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9641795a4d1SJed Brown 9651795a4d1SJed Brown Concepts: memory allocation 9661795a4d1SJed Brown M*/ 9671795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9681795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9691795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9701795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9711795a4d1SJed Brown 9721795a4d1SJed Brown /*MC 973dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 974d382aafbSBarry Smith 975d382aafbSBarry Smith Synopsis: 976aaa7dc30SBarry Smith #include <petscsys.h> 977dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 978d382aafbSBarry Smith 979d382aafbSBarry Smith Not Collective 980d382aafbSBarry Smith 981d382aafbSBarry Smith Input Parameter: 982d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 983d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 984d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 985d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 986d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 987d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 988dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 989d382aafbSBarry Smith 990d382aafbSBarry Smith Output Parameter: 991d382aafbSBarry Smith + r1 - memory allocated in first chunk 992d382aafbSBarry Smith . r2 - memory allocated in second chunk 993d382aafbSBarry Smith . r3 - memory allocated in third chunk 994d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 995d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 996d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 997eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 998d382aafbSBarry Smith 999d382aafbSBarry Smith Level: developer 1000d382aafbSBarry Smith 10011795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith Concepts: memory allocation 1004d382aafbSBarry Smith 1005d382aafbSBarry Smith M*/ 100620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10071d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1008d382aafbSBarry Smith #else 1009dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1010ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1011278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10123589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1013d382aafbSBarry Smith #endif 1014d382aafbSBarry Smith 1015d382aafbSBarry Smith /*MC 10161795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10171795a4d1SJed Brown 10181795a4d1SJed Brown Synopsis: 1019aaa7dc30SBarry Smith #include <petscsys.h> 10201795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10211795a4d1SJed Brown 10221795a4d1SJed Brown Not Collective 10231795a4d1SJed Brown 10241795a4d1SJed Brown Input Parameter: 10251795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10261795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10271795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10281795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10291795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10301795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10311795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10321795a4d1SJed Brown 10331795a4d1SJed Brown Output Parameter: 10341795a4d1SJed Brown + r1 - memory allocated in first chunk 10351795a4d1SJed Brown . r2 - memory allocated in second chunk 10361795a4d1SJed Brown . r3 - memory allocated in third chunk 10371795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10381795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10391795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10401795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10411795a4d1SJed Brown 10421795a4d1SJed Brown Level: developer 10431795a4d1SJed Brown 10441795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10451795a4d1SJed Brown 10461795a4d1SJed Brown Concepts: memory allocation 10471795a4d1SJed Brown M*/ 10481795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10497ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10501795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10511795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10527ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10531795a4d1SJed Brown 10541795a4d1SJed Brown /*MC 1055503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1056d382aafbSBarry Smith 1057eca87e8dSBarry Smith Synopsis: 1058aaa7dc30SBarry Smith #include <petscsys.h> 1059b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1060eca87e8dSBarry Smith 1061eca87e8dSBarry Smith Not Collective 1062eca87e8dSBarry Smith 1063d382aafbSBarry Smith Output Parameter: 1064b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1065d382aafbSBarry Smith 1066d382aafbSBarry Smith Level: beginner 1067d382aafbSBarry Smith 1068ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1069d382aafbSBarry Smith 1070d382aafbSBarry Smith Concepts: memory allocation 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith M*/ 1073b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1074ad0619ddSBarry Smith 1075ad0619ddSBarry Smith /*MC 1076b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1077ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1078ad0619ddSBarry Smith 1079ad0619ddSBarry Smith Synopsis: 1080aaa7dc30SBarry Smith #include <petscsys.h> 1081b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1082ad0619ddSBarry Smith 1083ad0619ddSBarry Smith Not Collective 1084ad0619ddSBarry Smith 1085ad0619ddSBarry Smith Input Parameter: 1086b00a9115SJed Brown . obj - object memory is logged to 1087ad0619ddSBarry Smith 1088ad0619ddSBarry Smith Output Parameter: 1089b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1090ad0619ddSBarry Smith 1091ad0619ddSBarry Smith Level: developer 1092ad0619ddSBarry Smith 1093ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1094ad0619ddSBarry Smith 1095ad0619ddSBarry Smith Concepts: memory allocation 1096ad0619ddSBarry Smith 1097ad0619ddSBarry Smith M*/ 1098b00a9115SJed Brown #define PetscNewLog(o,b) (PetscNew((b)) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(**(b))) : 0)) 1099d382aafbSBarry Smith 1100d382aafbSBarry Smith /*MC 1101d382aafbSBarry Smith PetscFree - Frees memory 1102d382aafbSBarry Smith 1103eca87e8dSBarry Smith Synopsis: 1104aaa7dc30SBarry Smith #include <petscsys.h> 1105eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1106eca87e8dSBarry Smith 1107eca87e8dSBarry Smith Not Collective 1108eca87e8dSBarry Smith 1109d382aafbSBarry Smith Input Parameter: 1110d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1111d382aafbSBarry Smith 1112d382aafbSBarry Smith Level: beginner 1113d382aafbSBarry Smith 111449d7da52SJed Brown Notes: 111549d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 111649d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1117d382aafbSBarry Smith 1118d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1119d382aafbSBarry Smith 1120d382aafbSBarry Smith Concepts: memory allocation 1121d382aafbSBarry Smith 1122d382aafbSBarry Smith M*/ 112349d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith /*MC 1126d382aafbSBarry Smith PetscFreeVoid - Frees memory 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith Synopsis: 1129aaa7dc30SBarry Smith #include <petscsys.h> 1130d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1131d382aafbSBarry Smith 1132eca87e8dSBarry Smith Not Collective 1133eca87e8dSBarry Smith 1134eca87e8dSBarry Smith Input Parameter: 1135eca87e8dSBarry Smith . memory - memory to free 1136eca87e8dSBarry Smith 1137d382aafbSBarry Smith Level: beginner 1138d382aafbSBarry Smith 1139d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1142d382aafbSBarry Smith 1143d382aafbSBarry Smith Concepts: memory allocation 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith M*/ 1146efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1147d382aafbSBarry Smith 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith /*MC 1150d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1151d382aafbSBarry Smith 1152eca87e8dSBarry Smith Synopsis: 1153aaa7dc30SBarry Smith #include <petscsys.h> 1154eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1155eca87e8dSBarry Smith 1156eca87e8dSBarry Smith Not Collective 1157eca87e8dSBarry Smith 1158d382aafbSBarry Smith Input Parameter: 1159d382aafbSBarry Smith + memory1 - memory to free 1160d382aafbSBarry Smith - memory2 - 2nd memory to free 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith Level: developer 1163d382aafbSBarry Smith 1164d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1165d382aafbSBarry Smith 1166d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1167d382aafbSBarry Smith 1168d382aafbSBarry Smith Concepts: memory allocation 1169d382aafbSBarry Smith 1170d382aafbSBarry Smith M*/ 1171b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1172d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1173d382aafbSBarry Smith #else 1174e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1175d382aafbSBarry Smith #endif 1176d382aafbSBarry Smith 1177d382aafbSBarry Smith /*MC 1178d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1179d382aafbSBarry Smith 1180eca87e8dSBarry Smith Synopsis: 1181aaa7dc30SBarry Smith #include <petscsys.h> 1182eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1183eca87e8dSBarry Smith 1184eca87e8dSBarry Smith Not Collective 1185eca87e8dSBarry Smith 1186d382aafbSBarry Smith Input Parameter: 1187d382aafbSBarry Smith + memory1 - memory to free 1188d382aafbSBarry Smith . memory2 - 2nd memory to free 1189d382aafbSBarry Smith - memory3 - 3rd memory to free 1190d382aafbSBarry Smith 1191d382aafbSBarry Smith Level: developer 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1194d382aafbSBarry Smith 1195d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith Concepts: memory allocation 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith M*/ 1200b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1201d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1202d382aafbSBarry Smith #else 1203e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1204d382aafbSBarry Smith #endif 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith /*MC 1207d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1208d382aafbSBarry Smith 1209eca87e8dSBarry Smith Synopsis: 1210aaa7dc30SBarry Smith #include <petscsys.h> 1211eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1212eca87e8dSBarry Smith 1213eca87e8dSBarry Smith Not Collective 1214eca87e8dSBarry Smith 1215d382aafbSBarry Smith Input Parameter: 1216d382aafbSBarry Smith + m1 - memory to free 1217d382aafbSBarry Smith . m2 - 2nd memory to free 1218d382aafbSBarry Smith . m3 - 3rd memory to free 1219d382aafbSBarry Smith - m4 - 4th memory to free 1220d382aafbSBarry Smith 1221d382aafbSBarry Smith Level: developer 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith Concepts: memory allocation 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith M*/ 1230b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1231d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1232d382aafbSBarry Smith #else 1233e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1234d382aafbSBarry Smith #endif 1235d382aafbSBarry Smith 1236d382aafbSBarry Smith /*MC 1237d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1238d382aafbSBarry Smith 1239eca87e8dSBarry Smith Synopsis: 1240aaa7dc30SBarry Smith #include <petscsys.h> 1241eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1242eca87e8dSBarry Smith 1243eca87e8dSBarry Smith Not Collective 1244eca87e8dSBarry Smith 1245d382aafbSBarry Smith Input Parameter: 1246d382aafbSBarry Smith + m1 - memory to free 1247d382aafbSBarry Smith . m2 - 2nd memory to free 1248d382aafbSBarry Smith . m3 - 3rd memory to free 1249d382aafbSBarry Smith . m4 - 4th memory to free 1250d382aafbSBarry Smith - m5 - 5th memory to free 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith Level: developer 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith Concepts: memory allocation 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith M*/ 1261b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1262d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1263d382aafbSBarry Smith #else 1264e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1265e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1266d382aafbSBarry Smith #endif 1267d382aafbSBarry Smith 1268d382aafbSBarry Smith 1269d382aafbSBarry Smith /*MC 1270d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1271d382aafbSBarry Smith 1272eca87e8dSBarry Smith Synopsis: 1273aaa7dc30SBarry Smith #include <petscsys.h> 1274eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1275eca87e8dSBarry Smith 1276eca87e8dSBarry Smith Not Collective 1277eca87e8dSBarry Smith 1278d382aafbSBarry Smith Input Parameter: 1279d382aafbSBarry Smith + m1 - memory to free 1280d382aafbSBarry Smith . m2 - 2nd memory to free 1281d382aafbSBarry Smith . m3 - 3rd memory to free 1282d382aafbSBarry Smith . m4 - 4th memory to free 1283d382aafbSBarry Smith . m5 - 5th memory to free 1284d382aafbSBarry Smith - m6 - 6th memory to free 1285d382aafbSBarry Smith 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith Level: developer 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1290d382aafbSBarry Smith 1291d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith Concepts: memory allocation 1294d382aafbSBarry Smith 1295d382aafbSBarry Smith M*/ 1296b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1297d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1298d382aafbSBarry Smith #else 1299e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1300e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1301e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1302d382aafbSBarry Smith #endif 1303d382aafbSBarry Smith 1304d382aafbSBarry Smith /*MC 1305d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1306d382aafbSBarry Smith 1307eca87e8dSBarry Smith Synopsis: 1308aaa7dc30SBarry Smith #include <petscsys.h> 1309eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1310eca87e8dSBarry Smith 1311eca87e8dSBarry Smith Not Collective 1312eca87e8dSBarry Smith 1313d382aafbSBarry Smith Input Parameter: 1314d382aafbSBarry Smith + m1 - memory to free 1315d382aafbSBarry Smith . m2 - 2nd memory to free 1316d382aafbSBarry Smith . m3 - 3rd memory to free 1317d382aafbSBarry Smith . m4 - 4th memory to free 1318d382aafbSBarry Smith . m5 - 5th memory to free 1319d382aafbSBarry Smith . m6 - 6th memory to free 1320d382aafbSBarry Smith - m7 - 7th memory to free 1321d382aafbSBarry Smith 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith Level: developer 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1326d382aafbSBarry Smith 1327d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1328d382aafbSBarry Smith PetscMalloc7() 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith Concepts: memory allocation 1331d382aafbSBarry Smith 1332d382aafbSBarry Smith M*/ 1333b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1334d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1335d382aafbSBarry Smith #else 1336e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1337e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 133806c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1339e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1340d382aafbSBarry Smith #endif 1341d382aafbSBarry Smith 1342efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1343efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1344efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith /* 1348a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1349a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1350a5057860SBarry Smith timing etc. 1351a5057860SBarry Smith */ 1352a5057860SBarry Smith typedef double PetscLogDouble; 1353a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1354a5057860SBarry Smith 1355a5057860SBarry Smith /* 135666d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1357d382aafbSBarry Smith */ 1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13630acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1364efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1366574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1368d382aafbSBarry Smith 1369d382aafbSBarry Smith /*E 1370d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1371d382aafbSBarry Smith 1372d382aafbSBarry Smith Level: beginner 1373d382aafbSBarry Smith 1374d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1375d382aafbSBarry Smith 1376d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1377d382aafbSBarry Smith PetscDataTypeGetSize() 1378d382aafbSBarry Smith 1379d382aafbSBarry Smith E*/ 1380d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13817e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 13826a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1383d382aafbSBarry Smith 1384d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1385d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1386d382aafbSBarry Smith #else 1387ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1388d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 138959a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 139059a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1391d382aafbSBarry Smith #else 1392d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1393d382aafbSBarry Smith #endif 1394d382aafbSBarry Smith #endif 1395ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1396d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 139759a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 139859a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1399d382aafbSBarry Smith #else 1400d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1401d382aafbSBarry Smith #endif 1402d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1403d382aafbSBarry Smith 1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14078e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1408d382aafbSBarry Smith 1409d382aafbSBarry Smith /* 1410d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1411d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1412d382aafbSBarry Smith functionality and/or error checking. 1413d382aafbSBarry Smith */ 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1418d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14302f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14352c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 143847340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14396fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1441d382aafbSBarry Smith 1442573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1443573b0fb4SBarry Smith 1444d382aafbSBarry Smith /*S 1445d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1446d382aafbSBarry Smith 1447d382aafbSBarry Smith Level: intermediate 1448d382aafbSBarry Smith 1449d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1450d382aafbSBarry Smith S*/ 1451d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1452d382aafbSBarry Smith 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1456d382aafbSBarry Smith 1457a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1458a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1459a53986e1SJed Brown 1460d382aafbSBarry Smith /* 1461d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1462d382aafbSBarry Smith */ 1463014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14647c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1465014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14662414b3c7SJed Brown #else 14672414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14682414b3c7SJed Brown #endif 14692414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1470014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1471014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1472d9822059SBarry Smith #else 1473d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1474d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1475d9822059SBarry Smith #endif 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1477d382aafbSBarry Smith 1478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1480eb3f98d2SBarry Smith 1481d382aafbSBarry Smith /*S 1482d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1483d382aafbSBarry Smith 1484d382aafbSBarry Smith Level: beginner 1485d382aafbSBarry Smith 14862981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1487d382aafbSBarry Smith 14881890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1489d382aafbSBarry Smith S*/ 1490d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1491d382aafbSBarry Smith 1492270bf2e7SJed Brown /*MC 1493127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1494127c8a3bSJed Brown 1495127c8a3bSJed Brown Level: developer 1496127c8a3bSJed Brown 1497127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1498127c8a3bSJed Brown 1499127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1500127c8a3bSJed Brown M*/ 1501127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1502127c8a3bSJed Brown 1503127c8a3bSJed Brown /*MC 1504270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1505270bf2e7SJed Brown 1506270bf2e7SJed Brown Level: developer 1507270bf2e7SJed Brown 1508270bf2e7SJed Brown Notes: 1509270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1510270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1511270bf2e7SJed Brown 15128dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1513270bf2e7SJed Brown M*/ 1514270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1515270bf2e7SJed Brown 1516d382aafbSBarry Smith /*S 1517140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1518d382aafbSBarry Smith by string name 1519d382aafbSBarry Smith 1520d382aafbSBarry Smith Level: advanced 1521d382aafbSBarry Smith 1522140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1523d382aafbSBarry Smith S*/ 1524140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1525d382aafbSBarry Smith 1526d382aafbSBarry Smith /*E 1527d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1528d382aafbSBarry Smith 1529d382aafbSBarry Smith Level: beginner 1530d382aafbSBarry Smith 1531d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1532d382aafbSBarry Smith 1533d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1534d382aafbSBarry Smith 1535d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1536d382aafbSBarry Smith 1537d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1538d382aafbSBarry Smith 1539d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1540d382aafbSBarry Smith 1541d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1542d382aafbSBarry Smith E*/ 1543d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1544d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1545d6a4318aSJed Brown 1546639ff905SBarry Smith /* 1547639ff905SBarry Smith Defines PETSc error handling. 1548639ff905SBarry Smith */ 1549639ff905SBarry Smith #include <petscerror.h> 1550d382aafbSBarry Smith 15510700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1552014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1553014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1555d382aafbSBarry Smith 1556d382aafbSBarry Smith /* 1557d382aafbSBarry Smith Routines that get memory usage information from the OS 1558d382aafbSBarry Smith */ 1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1562b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1563d382aafbSBarry Smith 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1566d382aafbSBarry Smith 1567d382aafbSBarry Smith /* 1568d382aafbSBarry Smith Initialization of PETSc 1569d382aafbSBarry Smith */ 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1580d382aafbSBarry Smith 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1582607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1583d382aafbSBarry Smith 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1588d382aafbSBarry Smith 1589d382aafbSBarry Smith /* 1590d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15912981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1592d382aafbSBarry Smith */ 1593638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1594638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1595638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1596d382aafbSBarry Smith 1597d382aafbSBarry Smith /* 1598d382aafbSBarry Smith Functions that can act on any PETSc object. 1599d382aafbSBarry Smith */ 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1619bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1620bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1628d382aafbSBarry Smith 1629665c2dedSJed Brown #include <petscviewertypes.h> 1630639ff905SBarry Smith #include <petscoptions.h> 1631639ff905SBarry Smith 1632639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1633dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1634639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16350005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16360005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1644ce1779c8SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,const char[],const char[]); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1650d382aafbSBarry Smith 1651e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16527aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1653e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1654e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1655e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1656e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1657e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1658e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1659e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1660e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1661e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 166215681b3cSBarry Smith 1663ec7429eaSBarry Smith #else 16647aab2a10SBarry Smith #define PetscSAWsBlock() 0 1665e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1666e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1667e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1668e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1669e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1670e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1671e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1672e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1673e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 167415681b3cSBarry Smith 1675ec7429eaSBarry Smith #endif 1676b90c6cbeSBarry Smith 16777d5d4d99SBarry Smith typedef void* PetscDLHandle; 1678e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 167982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 168082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 168182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16827d5d4d99SBarry Smith 1683d382aafbSBarry Smith 16845fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1685a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16865fe58b6fSBarry Smith #endif 16877eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1688a64a8e02SBarry Smith 1689d382aafbSBarry Smith /*S 1690140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1691d382aafbSBarry Smith 16921d0fab5eSBarry Smith Level: developer 1693d382aafbSBarry Smith 16941d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16951d0fab5eSBarry Smith 1696140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1697d382aafbSBarry Smith S*/ 1698140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1699d382aafbSBarry Smith 1700140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1701140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1702140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1703140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1704140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1705140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1706d382aafbSBarry Smith 1707d382aafbSBarry Smith /* 1708503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1709d382aafbSBarry Smith link libraries that will be loaded as needed. 1710d382aafbSBarry Smith */ 1711a240a19fSJed Brown 1712a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1713a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1714140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17151c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17161c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1717140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1718140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1719140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1720140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1721d382aafbSBarry Smith 1722d382aafbSBarry Smith /*S 1723d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1724d382aafbSBarry Smith 1725d382aafbSBarry Smith Level: advanced 1726d382aafbSBarry Smith 1727d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1728d382aafbSBarry Smith S*/ 1729d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1730014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1731014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1732014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1733014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1738d382aafbSBarry Smith 1739d382aafbSBarry Smith /* 1740d382aafbSBarry Smith Useful utility routines 1741d382aafbSBarry Smith */ 1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1748d382aafbSBarry Smith 1749503cfb0cSBarry Smith /* 1750ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1751503cfb0cSBarry Smith 1752503cfb0cSBarry Smith Notes: This is useful in cases like 1753503cfb0cSBarry Smith $ int *a; 1754ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1755ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1756503cfb0cSBarry Smith */ 1757d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1758503cfb0cSBarry Smith 1759cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1760cae2f346SBarry Smith # include <valgrind/valgrind.h> 1761cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1762cae2f346SBarry Smith #else 1763cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1764cae2f346SBarry Smith #endif 1765cae2f346SBarry Smith 1766238ccf28SShri Abhyankar 1767d382aafbSBarry Smith /*MC 1768d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1769d382aafbSBarry Smith 1770d382aafbSBarry Smith Synopsis: 1771aaa7dc30SBarry Smith #include <petscsys.h> 1772d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1773d382aafbSBarry Smith 1774eca87e8dSBarry Smith Not Collective 1775eca87e8dSBarry Smith 1776d382aafbSBarry Smith Input Parameters: 1777d382aafbSBarry Smith . format - the usual printf() format string 1778d382aafbSBarry Smith 1779d382aafbSBarry Smith Level: developer 1780d382aafbSBarry Smith 1781d382aafbSBarry Smith Fortran Note: 1782d382aafbSBarry Smith This routine is not supported in Fortran. 1783d382aafbSBarry Smith 1784d382aafbSBarry Smith Concepts: help messages^printing 1785d382aafbSBarry Smith Concepts: printing^help messages 1786d382aafbSBarry Smith 1787d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1788d382aafbSBarry Smith M*/ 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1790d382aafbSBarry Smith 1791fcfd50ebSBarry Smith /* 1792fcfd50ebSBarry Smith Defines PETSc profiling. 1793fcfd50ebSBarry Smith */ 17942c8e378dSBarry Smith #include <petsclog.h> 1795fcfd50ebSBarry Smith 1796b90c6cbeSBarry Smith 1797fcfd50ebSBarry Smith 1798fcfd50ebSBarry Smith /* 1799fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1800fcfd50ebSBarry Smith */ 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1805014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1808fcfd50ebSBarry Smith 1809fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1810fcfd50ebSBarry Smith #include <stdarg.h> 1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1814fcfd50ebSBarry Smith 1815fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1817fcfd50ebSBarry Smith #endif 1818fcfd50ebSBarry Smith 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1822d382aafbSBarry Smith 1823d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 182596a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 182674ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1827d382aafbSBarry Smith #endif 1828d382aafbSBarry Smith 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18310ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1836d382aafbSBarry Smith 1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1838d382aafbSBarry Smith 1839d382aafbSBarry Smith /*S 1840d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1841d382aafbSBarry Smith 1842d382aafbSBarry Smith Level: advanced 1843d382aafbSBarry Smith 1844d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1845d382aafbSBarry Smith S*/ 1846014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1847d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1853d382aafbSBarry Smith 1854d382aafbSBarry Smith /* 1855d382aafbSBarry Smith For use in debuggers 1856d382aafbSBarry Smith */ 1857014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1858014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1862d382aafbSBarry Smith 1863a663daf8SBarry Smith #include <stddef.h> 1864a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1865d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1866d382aafbSBarry Smith #include <stdlib.h> 1867d382aafbSBarry Smith #endif 18686c7e564aSBarry Smith 18694a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1870d382aafbSBarry Smith #include <xmmintrin.h> 1871d382aafbSBarry Smith #endif 1872d382aafbSBarry Smith 1873fcfd50ebSBarry Smith #undef __FUNCT__ 1874fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1875d382aafbSBarry Smith /*@C 1876d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1877d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1878d382aafbSBarry Smith PetscMemmove() in that case. 1879d382aafbSBarry Smith 1880d382aafbSBarry Smith Not Collective 1881d382aafbSBarry Smith 1882d382aafbSBarry Smith Input Parameters: 1883d382aafbSBarry Smith + b - pointer to initial memory space 1884d382aafbSBarry Smith - n - length (in bytes) of space to copy 1885d382aafbSBarry Smith 1886d382aafbSBarry Smith Output Parameter: 1887d382aafbSBarry Smith . a - pointer to copy space 1888d382aafbSBarry Smith 1889d382aafbSBarry Smith Level: intermediate 1890d382aafbSBarry Smith 1891d382aafbSBarry Smith Compile Option: 1892d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1893d382aafbSBarry Smith for memory copies on double precision values. 1894d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1895d382aafbSBarry Smith for memory copies on double precision values. 1896d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1897d382aafbSBarry Smith for memory copies on double precision values. 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith Note: 1900d382aafbSBarry Smith This routine is analogous to memcpy(). 1901d382aafbSBarry Smith 1902503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1903503cfb0cSBarry Smith 1904d382aafbSBarry Smith Concepts: memory^copying 1905d382aafbSBarry Smith Concepts: copying^memory 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith .seealso: PetscMemmove() 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith @*/ 19107087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1911d382aafbSBarry Smith { 1912d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1913d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1914d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1915a7e36092SMatthew G Knepley PetscFunctionBegin; 1916e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1917e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1918a7e36092SMatthew G Knepley #else 1919d382aafbSBarry Smith PetscFunctionBegin; 1920a7e36092SMatthew G Knepley #endif 1921d382aafbSBarry Smith if (a != b) { 1922d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1923e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1924d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1925d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1926d382aafbSBarry Smith #endif 1927d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1928d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1929d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1930d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1931c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1932c5df96a5SBarry Smith PetscErrorCode ierr; 1933c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19348b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1935d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1936d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1937d382aafbSBarry Smith #else 1938d382aafbSBarry Smith size_t i; 1939d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1940d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith } else { 1943d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1944d382aafbSBarry Smith } 1945d382aafbSBarry Smith #else 1946d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1947d382aafbSBarry Smith #endif 1948d382aafbSBarry Smith } 1949d382aafbSBarry Smith PetscFunctionReturn(0); 1950d382aafbSBarry Smith } 1951d382aafbSBarry Smith 1952d382aafbSBarry Smith /*@C 1953d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith Not Collective 1956d382aafbSBarry Smith 1957d382aafbSBarry Smith Input Parameters: 1958d382aafbSBarry Smith + a - pointer to beginning memory location 1959d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1960d382aafbSBarry Smith 1961d382aafbSBarry Smith Level: intermediate 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith Compile Option: 1964d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1965d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1966d382aafbSBarry Smith 1967503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1968503cfb0cSBarry Smith 1969d382aafbSBarry Smith Concepts: memory^zeroing 1970d382aafbSBarry Smith Concepts: zeroing^memory 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith .seealso: PetscMemcpy() 1973d382aafbSBarry Smith @*/ 19747087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1975d382aafbSBarry Smith { 1976d382aafbSBarry Smith if (n > 0) { 1977d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1978e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1979d382aafbSBarry Smith #endif 1980d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1981d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1982d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1983d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1984d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1985d382aafbSBarry Smith } else { 1986d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1987d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1988d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1989d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1990d382aafbSBarry Smith } else { 1991d382aafbSBarry Smith #endif 1992d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1993d382aafbSBarry Smith bzero((char *)a,n); 1994d382aafbSBarry Smith #else 1995d382aafbSBarry Smith memset((char*)a,0,n); 1996d382aafbSBarry Smith #endif 1997d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1998d382aafbSBarry Smith } 1999d382aafbSBarry Smith #endif 2000d382aafbSBarry Smith } 2001d382aafbSBarry Smith return 0; 2002d382aafbSBarry Smith } 2003d382aafbSBarry Smith 2004d382aafbSBarry Smith /*MC 2005d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2006d382aafbSBarry Smith 2007eca87e8dSBarry Smith Synopsis: 2008aaa7dc30SBarry Smith #include <petscsys.h> 2009eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2010eca87e8dSBarry Smith 2011d382aafbSBarry Smith Not Collective 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith Input Parameters: 2014d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2015d382aafbSBarry Smith . n - number of elements to fetch 2016d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 201750d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2018d382aafbSBarry Smith 2019d382aafbSBarry Smith Level: developer 2020d382aafbSBarry Smith 2021d382aafbSBarry Smith Notes: 2022d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2023d382aafbSBarry Smith 202450d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 202550d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 202650d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 202763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 202863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 202963cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2030d382aafbSBarry Smith 2031d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2032d382aafbSBarry Smith address). 2033d382aafbSBarry Smith 2034d382aafbSBarry Smith Concepts: memory 2035d382aafbSBarry Smith M*/ 2036d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2037d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2038d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2039d382aafbSBarry Smith } while (0) 2040d382aafbSBarry Smith 2041d382aafbSBarry Smith /* 2042d382aafbSBarry Smith Determine if some of the kernel computation routines use 2043d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2044d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2045d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2046e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2047d382aafbSBarry Smith */ 2048d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2051d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2052d382aafbSBarry Smith #endif 2053d382aafbSBarry Smith 20545a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20555a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2056d382aafbSBarry Smith #endif 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2059d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2060d382aafbSBarry Smith #endif 2061d382aafbSBarry Smith 2062d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2063d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2064d382aafbSBarry Smith #endif 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2067d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2068d382aafbSBarry Smith #endif 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2071d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2072d382aafbSBarry Smith #endif 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2075d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2076d382aafbSBarry Smith #endif 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2079d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2080d382aafbSBarry Smith #endif 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2083d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2084d382aafbSBarry Smith #endif 2085d382aafbSBarry Smith 2086d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2087d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2088d382aafbSBarry Smith #endif 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2091d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2092d382aafbSBarry Smith #endif 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2095d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2096d382aafbSBarry Smith #endif 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2099d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2100d382aafbSBarry Smith #endif 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2103d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2104d382aafbSBarry Smith #endif 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #endif 2107d382aafbSBarry Smith 2108d382aafbSBarry Smith /* 2109d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2110d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2111d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2112d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2113d382aafbSBarry Smith ugly extern "C" {} wrappers. 2114d382aafbSBarry Smith */ 2115d382aafbSBarry Smith #if defined(__cplusplus) 2116d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2117d382aafbSBarry Smith #define EXTERN_C_END } 2118d382aafbSBarry Smith #else 2119d382aafbSBarry Smith #define EXTERN_C_BEGIN 2120d382aafbSBarry Smith #define EXTERN_C_END 2121d382aafbSBarry Smith #endif 2122d382aafbSBarry Smith 2123d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith /*MC 2126d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2127d382aafbSBarry Smith communication 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith Level: beginner 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2132d382aafbSBarry Smith 2133d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2134d382aafbSBarry Smith M*/ 2135d382aafbSBarry Smith 2136d382aafbSBarry Smith /*MC 2137d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2138d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2139d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2140d382aafbSBarry Smith 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith Level: beginner 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2145d382aafbSBarry Smith M*/ 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith /*MC 21488619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21498619c96cSJed Brown 21508619c96cSJed Brown Synopsis: 21518619c96cSJed Brown #include <petscsys.h> 21528619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21538619c96cSJed Brown 21548619c96cSJed Brown Level: beginner 21558619c96cSJed Brown 21568619c96cSJed Brown Note: 2157*8cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21588619c96cSJed Brown 21598619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21608619c96cSJed Brown M*/ 21618619c96cSJed Brown 21628619c96cSJed Brown /*MC 2163d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith Level: beginner 2166d382aafbSBarry Smith 2167d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2168d382aafbSBarry Smith M*/ 2169d382aafbSBarry Smith 2170d382aafbSBarry Smith /*MC 2171d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2172d382aafbSBarry Smith Level: beginner 2173d382aafbSBarry Smith 2174d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2175d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2176d382aafbSBarry Smith 2177d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2178d382aafbSBarry Smith M*/ 2179d382aafbSBarry Smith 2180d382aafbSBarry Smith /*MC 2181d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith Level: beginner 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2186d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2189d382aafbSBarry Smith M*/ 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith /*MC 2192d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2193d382aafbSBarry Smith 2194d382aafbSBarry Smith Level: beginner 2195d382aafbSBarry Smith 2196d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2197d382aafbSBarry Smith pass this value 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2200d382aafbSBarry Smith M*/ 2201d382aafbSBarry Smith 2202d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2203d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2204014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2205014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2206d382aafbSBarry Smith #else 2207d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2208d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2209d382aafbSBarry Smith #endif 2210d382aafbSBarry Smith #endif 2211d382aafbSBarry Smith 2212d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2213d382aafbSBarry Smith 2214d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2215d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2216d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2217d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2218d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2219d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2220d382aafbSBarry Smith 2221c5df96a5SBarry Smith #undef __FUNCT__ 2222c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 2223c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2224c5df96a5SBarry Smith { 2225c5df96a5SBarry Smith PetscFunctionBegin; 2226ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2227c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2228c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2229c5df96a5SBarry Smith #endif 2230c5df96a5SBarry Smith PetscFunctionReturn(0); 2231c5df96a5SBarry Smith } 2232c5df96a5SBarry Smith 22334dc2109aSBarry Smith #undef __FUNCT__ 22344dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 22354dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22364dc2109aSBarry Smith { 22374dc2109aSBarry Smith PetscFunctionBegin; 2238ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22394dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22404dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22414dc2109aSBarry Smith #endif 22424dc2109aSBarry Smith PetscFunctionReturn(0); 22434dc2109aSBarry Smith } 22444dc2109aSBarry Smith 2245c5df96a5SBarry Smith 2246d382aafbSBarry Smith /* 22472981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2248d382aafbSBarry Smith */ 2249d382aafbSBarry Smith #if defined(hz) 2250d382aafbSBarry Smith #undef hz 2251d382aafbSBarry Smith #endif 2252d382aafbSBarry Smith 2253d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2254d382aafbSBarry Smith 2255d382aafbSBarry Smith 2256d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2257d382aafbSBarry Smith #include <limits.h> 2258d382aafbSBarry Smith #endif 2259d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2260d382aafbSBarry Smith #include <sys/param.h> 2261d382aafbSBarry Smith #endif 2262d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2263d382aafbSBarry Smith #include <sys/types.h> 2264d382aafbSBarry Smith #endif 2265d382aafbSBarry Smith #if defined(MAXPATHLEN) 2266d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2267d382aafbSBarry Smith #elif defined(MAX_PATH) 2268d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2269d382aafbSBarry Smith #elif defined(_MAX_PATH) 2270d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2271d382aafbSBarry Smith #else 2272d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2273d382aafbSBarry Smith #endif 2274d382aafbSBarry Smith 2275d382aafbSBarry Smith /*MC 2276d382aafbSBarry Smith 2277d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2278d382aafbSBarry Smith 2279d382aafbSBarry Smith $ 1) classic Fortran 77 style 2280d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2281d382aafbSBarry Smith $ XXX variablename 2282d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2283d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2284d382aafbSBarry Smith $ 2285d382aafbSBarry Smith $ 2) classic Fortran 90 style 2286d1716517SSatish Balay $#include "finclude/petscXXX.h" 2287d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2288d382aafbSBarry Smith $ XXX variablename 2289d382aafbSBarry Smith $ 2290d382aafbSBarry Smith $ 3) Using Fortran modules 2291d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2292d382aafbSBarry Smith $ use petscXXXX 2293d382aafbSBarry Smith $ XXX variablename 2294d382aafbSBarry Smith $ 2295d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2296d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2297d382aafbSBarry Smith $ use petscXXXX 2298d382aafbSBarry Smith $ type(XXX) variablename 2299e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2300d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2301d382aafbSBarry Smith 2302d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2303d382aafbSBarry Smith 2304d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2305d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2306d382aafbSBarry Smith $ integer variablename 2307d382aafbSBarry Smith $ 2308d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2309d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2310d382aafbSBarry Smith 2311d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2312d382aafbSBarry Smith for only a few PETSc functions. 2313d382aafbSBarry Smith 2314d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2315d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2316d382aafbSBarry Smith you cannot have something like 2317d382aafbSBarry Smith $ PetscInt row,col 2318d382aafbSBarry Smith $ PetscScalar val 2319d382aafbSBarry Smith $ ... 2320d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2321d382aafbSBarry Smith You must instead have 2322d382aafbSBarry Smith $ PetscInt row(1),col(1) 2323d382aafbSBarry Smith $ PetscScalar val(1) 2324d382aafbSBarry Smith $ ... 2325d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2326d382aafbSBarry Smith 2327d382aafbSBarry Smith 2328d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2329d382aafbSBarry Smith 2330d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2331d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2332d382aafbSBarry Smith 2333d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2334d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2335d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2336d382aafbSBarry Smith 2337d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2338e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2339d382aafbSBarry Smith 2340d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2341d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2342d382aafbSBarry Smith 2343d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2344d382aafbSBarry Smith automatically by "make allfortranstubs". 2345d382aafbSBarry Smith 2346e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2347d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2348d382aafbSBarry Smith include their predecessors 2349d382aafbSBarry Smith 2350d382aafbSBarry Smith Level: beginner 2351d382aafbSBarry Smith 2352d382aafbSBarry Smith M*/ 2353d382aafbSBarry Smith 2354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2355014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2356014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2358014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 236027710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2361d382aafbSBarry Smith 2362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 236460e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2366014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2368014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 236917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 237017d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2371014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2375745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 238021e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2381d382aafbSBarry Smith 2382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2384d382aafbSBarry Smith 238576bdecfbSBarry Smith /*J 2386d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2387d382aafbSBarry Smith 2388d382aafbSBarry Smith Level: beginner 2389d382aafbSBarry Smith 2390e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2391d382aafbSBarry Smith with the option --download-sprng 2392d382aafbSBarry Smith 23938f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 239476bdecfbSBarry Smith J*/ 239519fd82e9SBarry Smith typedef const char* PetscRandomType; 2396d382aafbSBarry Smith #define PETSCRAND "rand" 2397d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2398d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2399d382aafbSBarry Smith 2400d382aafbSBarry Smith /* Logging support */ 2401014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2402d382aafbSBarry Smith 2403607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2404d382aafbSBarry Smith 2405d382aafbSBarry Smith /*S 2406d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2407d382aafbSBarry Smith 2408d382aafbSBarry Smith Level: intermediate 2409d382aafbSBarry Smith 2410d382aafbSBarry Smith Concepts: random numbers 2411d382aafbSBarry Smith 2412d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2413d382aafbSBarry Smith S*/ 2414d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2415d382aafbSBarry Smith 2416d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2417140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2418014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2419d382aafbSBarry Smith 2420607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2421bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 242219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 242419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2425ce1779c8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,const char prefix[],const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,prefix,name);} 2426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2427d382aafbSBarry Smith 2428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2437d382aafbSBarry Smith 2438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2445d382aafbSBarry Smith 2446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2457e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2459d382aafbSBarry Smith 2460d382aafbSBarry Smith /* 2461d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2462d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2463d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2464d382aafbSBarry Smith PetscBinarySeek(). 2465d382aafbSBarry Smith */ 2466d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2467d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2468d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2469d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2470d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2471d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2472d382aafbSBarry Smith 2473d382aafbSBarry Smith /*E 2474d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2475d382aafbSBarry Smith 2476d382aafbSBarry Smith Level: advanced 2477d382aafbSBarry Smith 2478d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2479d382aafbSBarry Smith E*/ 2480d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2481014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2484d382aafbSBarry Smith 2485014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2487014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2488014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2489014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2491d382aafbSBarry Smith 2492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2497f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2498d382aafbSBarry Smith 24996145cd65SJed Brown /*E 25006145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 25016145cd65SJed Brown 25026145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 25036145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 25046145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 25056145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 25066145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 25076145cd65SJed Brown 25086145cd65SJed Brown Level: developer 25096145cd65SJed Brown 25106145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 25116145cd65SJed Brown E*/ 25126145cd65SJed Brown typedef enum { 25136145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 25146145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 25156145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 25166145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 25176145cd65SJed Brown } PetscBuildTwoSidedType; 25186145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 25196145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 25206145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 25216145cd65SJed Brown 2522014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2523d382aafbSBarry Smith 2524d382aafbSBarry Smith /*E 2525d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2526d382aafbSBarry Smith 2527d382aafbSBarry Smith Level: beginner 2528d382aafbSBarry Smith 2529d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2530d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2531d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2532d382aafbSBarry Smith E*/ 25336fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2534d382aafbSBarry Smith 2535d382aafbSBarry Smith /*MC 2536d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2537d382aafbSBarry Smith 2538d382aafbSBarry Smith Level: beginner 2539d382aafbSBarry Smith 2540d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2541eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2542eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2543d382aafbSBarry Smith 2544d382aafbSBarry Smith M*/ 2545d382aafbSBarry Smith 2546d382aafbSBarry Smith /*MC 2547d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2548d382aafbSBarry Smith value into that location 2549d382aafbSBarry Smith 2550d382aafbSBarry Smith Level: beginner 2551d382aafbSBarry Smith 2552d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2553eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2554eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2555d382aafbSBarry Smith 2556d382aafbSBarry Smith M*/ 2557d382aafbSBarry Smith 2558d382aafbSBarry Smith /*MC 2559d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2560d382aafbSBarry Smith 2561d382aafbSBarry Smith Level: beginner 2562d382aafbSBarry Smith 2563d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2564d382aafbSBarry Smith 2565d382aafbSBarry Smith M*/ 2566d382aafbSBarry Smith 2567ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2568ce94432eSBarry Smith 256945487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 257045487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 257145487dadSJed Brown 2572d382aafbSBarry Smith /*S 2573d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2574d382aafbSBarry Smith 2575d382aafbSBarry Smith Level: advanced 2576d382aafbSBarry Smith 2577d382aafbSBarry Smith Concepts: communicator, create 2578d382aafbSBarry Smith S*/ 2579d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2580d382aafbSBarry Smith 2581d382aafbSBarry Smith struct _n_PetscSubcomm { 2582d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2583d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2584d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 258545487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 258645487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2587708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 258845487dadSJed Brown PetscSubcommType type; 2589d382aafbSBarry Smith }; 2590d382aafbSBarry Smith 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 259565d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2596053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2597f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2598d382aafbSBarry Smith 25990f453b92SJed Brown /*S 26000f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 26010f453b92SJed Brown 26020f453b92SJed Brown Level: developer 26030f453b92SJed Brown 26040f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 26050f453b92SJed Brown S*/ 26060f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 260713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 26080f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 260913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2610137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2611137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2612137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 261313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 261413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 26150f453b92SJed Brown 2616471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2617471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2618471ecdacSJed Brown * possible. */ 2619f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2620d382aafbSBarry Smith 2621268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 26221f817a21SBarry Smith #undef __FUNCT__ 26231f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 26241f817a21SBarry Smith /*@C 26251f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 26261f817a21SBarry Smith 26271f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 26281f817a21SBarry Smith 26291f817a21SBarry Smith Input Parameters: 26301f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 26311f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 26321f817a21SBarry Smith 2633850545d0SSatish Balay Level: intermediate 2634850545d0SSatish Balay 26351f817a21SBarry Smith Options Database: 26361f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 26371f817a21SBarry Smith @*/ 2638dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2639dff31646SBarry Smith { 2640dff31646SBarry Smith size_t len; 2641dff31646SBarry Smith char *vstring; 2642dff31646SBarry Smith PetscErrorCode ierr; 2643dff31646SBarry Smith 26441f817a21SBarry Smith PetscFunctionBegin; 26458d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2646dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2647dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2648dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2649dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26501f817a21SBarry Smith PetscFunctionReturn(0); 2651dff31646SBarry Smith } 2652dff31646SBarry Smith 2653b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2654fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2655fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2656f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2657fe278a28SBarry Smith 2658f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2659f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2660b967cddfSBarry Smith 266104102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2662dff31646SBarry Smith 266368e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 26645dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2665d382aafbSBarry Smith 2666d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2667d382aafbSBarry Smith #undef __FUNCT__ 2668d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2669d382aafbSBarry Smith 2670d382aafbSBarry Smith #endif 2671