1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 44014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 45014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 4621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 47014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 48014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 49014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 5021f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 51d382aafbSBarry Smith #else 52014dd563SJed Brown # define PETSC_DLLEXPORT 53014dd563SJed Brown # define PETSC_DLLIMPORT 5421f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 55014dd563SJed Brown #endif 56014dd563SJed Brown 57014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 58014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 59014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 60014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 61014dd563SJed Brown #endif 62014dd563SJed Brown 632c280183SJed Brown #if defined(__cplusplus) 64014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 65638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 6621f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #else 68014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 69638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 706258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 71d382aafbSBarry Smith #endif 7227710113SBarry Smith 732c8e378dSBarry Smith #include <petscversion.h> 74301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 75d382aafbSBarry Smith 76d382aafbSBarry Smith /* ========================================================================== */ 77d382aafbSBarry Smith 78d382aafbSBarry Smith /* 79d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 80d382aafbSBarry Smith 81d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 82d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 83d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 84d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 85d382aafbSBarry Smith mpicxx.h directly in their code 86d382aafbSBarry Smith */ 87fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 88d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 89fa9e63e2SJed Brown #endif 90fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 91d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 92fa9e63e2SJed Brown #endif 932c8e378dSBarry Smith #include <mpi.h> 9465013866SBarry Smith 95d382aafbSBarry Smith /* 962981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 97d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 98d382aafbSBarry Smith */ 99d382aafbSBarry Smith #include <stdio.h> 100d382aafbSBarry Smith 101d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 102d382aafbSBarry Smith #if !defined(MPIAPI) 103d382aafbSBarry Smith #define MPIAPI 104d382aafbSBarry Smith #endif 105d382aafbSBarry Smith 106894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 107894dd566SJed Brown #if defined(__has_attribute) 108894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 109894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1108ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1118ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 112894dd566SJed Brown # endif 113894dd566SJed Brown #endif 114894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 115894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1168ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1178ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 118894dd566SJed Brown #endif 119b3506946SBarry Smith 120d382aafbSBarry Smith /*MC 121d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 122d382aafbSBarry Smith 123d382aafbSBarry Smith Level: beginner 124d382aafbSBarry Smith 125d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 126d382aafbSBarry Smith M*/ 127d382aafbSBarry Smith typedef int PetscErrorCode; 128d382aafbSBarry Smith 129d382aafbSBarry Smith /*MC 130d382aafbSBarry Smith 131503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 132d382aafbSBarry Smith (internal integer in the data structure used for error 1332981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1340700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 135d382aafbSBarry Smith 136d382aafbSBarry Smith Level: advanced 137d382aafbSBarry Smith 1380700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 139d382aafbSBarry Smith M*/ 1400700a824SBarry Smith typedef int PetscClassId; 141d382aafbSBarry Smith 142d382aafbSBarry Smith 143d382aafbSBarry Smith /*MC 144d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 145d382aafbSBarry Smith 146d382aafbSBarry Smith Level: intermediate 147d382aafbSBarry Smith 148d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1493b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 150d382aafbSBarry Smith 1514dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1522981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 153d382aafbSBarry Smith 154d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 155d382aafbSBarry Smith 156d382aafbSBarry Smith M*/ 157d382aafbSBarry Smith typedef int PetscMPIInt; 158d382aafbSBarry Smith 159d382aafbSBarry Smith /*MC 160d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 161d382aafbSBarry Smith 162d382aafbSBarry Smith Level: intermediate 163d382aafbSBarry Smith 164d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 165d382aafbSBarry Smith M*/ 166d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 1675a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 168d382aafbSBarry Smith 169d382aafbSBarry Smith /*MC 170d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1713b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 172d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 173d382aafbSBarry Smith 174d382aafbSBarry Smith Level: intermediate 175d382aafbSBarry Smith 176d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 177d382aafbSBarry Smith M*/ 178f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 179f505b413SSatish Balay typedef long long Petsc64bitInt; 180f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 181236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 182236ed0a3SSatish Balay #else 183f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 184236ed0a3SSatish Balay #endif 185d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 186236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 187d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 188d382aafbSBarry Smith #else 189d382aafbSBarry Smith typedef int PetscInt; 190d382aafbSBarry Smith #define MPIU_INT MPI_INT 191d382aafbSBarry Smith #endif 192236ed0a3SSatish Balay 193d382aafbSBarry Smith 194702bc34aSSatish Balay /*MC 195702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 196702bc34aSSatish Balay 197702bc34aSSatish Balay Level: intermediate 198702bc34aSSatish Balay 199702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 200702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 201702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 202702bc34aSSatish Balay 203c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2042981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 205702bc34aSSatish Balay 2062981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 207702bc34aSSatish Balay if you run ./configure with the option 208702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2092981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2102981ebdbSBarry Smith 2112981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2122981ebdbSBarry Smith 2132981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 214702bc34aSSatish Balay 215702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 216702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 217702bc34aSSatish Balay 218702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 219702bc34aSSatish Balay 220702bc34aSSatish Balay M*/ 221702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 222702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 223702bc34aSSatish Balay #else 224702bc34aSSatish Balay typedef int PetscBLASInt; 225702bc34aSSatish Balay #endif 226702bc34aSSatish Balay 22758b60935SBarry Smith /*EC 22858b60935SBarry Smith 2292981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 23058b60935SBarry Smith 23158b60935SBarry Smith Level: advanced 23258b60935SBarry Smith 23358b60935SBarry Smith .seealso: PetscObjectSetPrecision() 23458b60935SBarry Smith E*/ 23558b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 236014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 23758b60935SBarry Smith 238503cfb0cSBarry Smith /* 239503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 240503cfb0cSBarry Smith */ 241d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 242adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 243d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 244adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 245d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 246adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 247d382aafbSBarry Smith #else 248d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 249d382aafbSBarry Smith #endif 250d382aafbSBarry Smith 251d382aafbSBarry Smith 252d382aafbSBarry Smith /* 253d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 254d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 255d382aafbSBarry Smith */ 256014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 257d382aafbSBarry Smith 258d382aafbSBarry Smith /* 259d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 260d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 261d382aafbSBarry Smith */ 262014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 263d382aafbSBarry Smith 264d382aafbSBarry Smith /*MC 265d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 266d382aafbSBarry Smith 267d382aafbSBarry Smith Synopsis: 268f2ba6396SBarry Smith #include "petscsys.h" 269ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 270d382aafbSBarry Smith 271eca87e8dSBarry Smith Not Collective 272eca87e8dSBarry Smith 273d382aafbSBarry Smith Input Parameters: 274d382aafbSBarry Smith . cond - condition or expression 275d382aafbSBarry Smith 276d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 277d382aafbSBarry Smith branch is unlikely. 278d382aafbSBarry Smith 279d382aafbSBarry Smith Level: advanced 280d382aafbSBarry Smith 281d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 282d382aafbSBarry Smith M*/ 283d382aafbSBarry Smith 284d382aafbSBarry Smith /*MC 285d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 286d382aafbSBarry Smith 287d382aafbSBarry Smith Synopsis: 288f2ba6396SBarry Smith #include "petscsys.h" 289ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 290d382aafbSBarry Smith 291eca87e8dSBarry Smith Not Collective 292eca87e8dSBarry Smith 293d382aafbSBarry Smith Input Parameters: 294d382aafbSBarry Smith . cond - condition or expression 295d382aafbSBarry Smith 296d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 297d382aafbSBarry Smith branch is likely. 298d382aafbSBarry Smith 299d382aafbSBarry Smith Level: advanced 300d382aafbSBarry Smith 301d382aafbSBarry Smith .seealso: PetscUnlikely() 302d382aafbSBarry Smith M*/ 303d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 304d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 305d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 306d382aafbSBarry Smith #else 307cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 308cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 309d382aafbSBarry Smith #endif 310d382aafbSBarry Smith 311d382aafbSBarry Smith /* 312d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 313d382aafbSBarry Smith */ 3142c8e378dSBarry Smith #include <petscmath.h> 315d382aafbSBarry Smith 316d382aafbSBarry Smith /* 317d382aafbSBarry Smith Declare extern C stuff after including external header files 318d382aafbSBarry Smith */ 319d382aafbSBarry Smith 320d382aafbSBarry Smith 321d382aafbSBarry Smith /* 322d382aafbSBarry Smith Basic PETSc constants 323d382aafbSBarry Smith */ 324d382aafbSBarry Smith 325d382aafbSBarry Smith /*E 326ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 327d382aafbSBarry Smith 328d382aafbSBarry Smith Level: beginner 329d382aafbSBarry Smith 330ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 33134e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 33234e82e7dSBarry Smith 333d382aafbSBarry Smith E*/ 334ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3356a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3365a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 33770b3c8c7SBarry Smith 33870b3c8c7SBarry Smith /*E 33970b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 34070b3c8c7SBarry Smith 34170b3c8c7SBarry Smith Level: beginner 34270b3c8c7SBarry Smith 34370b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 34470b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 34570b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 34670b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 34770b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 34870b3c8c7SBarry Smith 34970b3c8c7SBarry Smith E*/ 35070b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3516a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 352d382aafbSBarry Smith 353d382aafbSBarry Smith /*MC 354ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 355d382aafbSBarry Smith 356d382aafbSBarry Smith Level: beginner 357d382aafbSBarry Smith 358d382aafbSBarry Smith Note: Zero integer 359d382aafbSBarry Smith 360ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 361d382aafbSBarry Smith M*/ 362d382aafbSBarry Smith 363d382aafbSBarry Smith /*MC 364ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 365d382aafbSBarry Smith 366d382aafbSBarry Smith Level: beginner 367d382aafbSBarry Smith 368d382aafbSBarry Smith Note: Nonzero integer 369d382aafbSBarry Smith 370ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 371d382aafbSBarry Smith M*/ 372d382aafbSBarry Smith 373d382aafbSBarry Smith /*MC 3740298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 375d382aafbSBarry Smith 376d382aafbSBarry Smith Level: beginner 377d382aafbSBarry Smith 378d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 379d382aafbSBarry Smith some default 380d382aafbSBarry Smith 381d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 382503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 383d382aafbSBarry Smith 384d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 385d382aafbSBarry Smith 386d382aafbSBarry Smith M*/ 3873bcbec90SJed Brown #define PETSC_NULL NULL 388d382aafbSBarry Smith 389d382aafbSBarry Smith /*MC 3900298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 391d382aafbSBarry Smith 392d382aafbSBarry Smith Level: beginner 393d382aafbSBarry Smith 394d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 395d382aafbSBarry Smith some default 396d382aafbSBarry Smith 397d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 398d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 399d382aafbSBarry Smith 400d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 401d382aafbSBarry Smith 402d382aafbSBarry Smith M*/ 4030298fd71SBarry Smith #define PETSC_IGNORE NULL 404d382aafbSBarry Smith 405d382aafbSBarry Smith /*MC 406557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 407557d4da8SBarry Smith where you wish PETSc to use the default. 408557d4da8SBarry Smith 409557d4da8SBarry Smith Level: beginner 410557d4da8SBarry Smith 411557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 412557d4da8SBarry Smith 413557d4da8SBarry Smith M*/ 414557d4da8SBarry Smith #define PETSC_DECIDE -1 415557d4da8SBarry Smith 416557d4da8SBarry Smith /*MC 417d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 418d382aafbSBarry Smith where you wish PETSc to compute the required value. 419d382aafbSBarry Smith 420d382aafbSBarry Smith Level: beginner 421d382aafbSBarry Smith 422557d4da8SBarry Smith 423557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 424557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 425557d4da8SBarry Smith 4260298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 427d382aafbSBarry Smith 428d382aafbSBarry Smith M*/ 429d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 430d382aafbSBarry Smith 431d382aafbSBarry Smith /*MC 432557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 433557d4da8SBarry Smith where you wish PETSc to use the default. 434557d4da8SBarry Smith 435557d4da8SBarry Smith Level: beginner 436557d4da8SBarry Smith 437557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 438557d4da8SBarry Smith 4390298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 440557d4da8SBarry Smith 441557d4da8SBarry Smith M*/ 442557d4da8SBarry Smith #define PETSC_DEFAULT -2 443557d4da8SBarry Smith 444557d4da8SBarry Smith /*MC 445d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 446d382aafbSBarry Smith all the processs that PETSc knows about. 447d382aafbSBarry Smith 448d382aafbSBarry Smith Level: beginner 449d382aafbSBarry Smith 450d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 451d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 452d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 453d382aafbSBarry Smith PetscInitialize() 454d382aafbSBarry Smith 455d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 456d382aafbSBarry Smith 457d382aafbSBarry Smith M*/ 458014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 459d382aafbSBarry Smith 460d382aafbSBarry Smith /*MC 461503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 462d382aafbSBarry Smith 463d382aafbSBarry Smith Level: beginner 464d382aafbSBarry Smith 465d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 466d382aafbSBarry Smith 467d382aafbSBarry Smith M*/ 468d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 469d382aafbSBarry Smith 470d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 471014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 472014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 473014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 4744cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 475d382aafbSBarry Smith 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 479d382aafbSBarry Smith 480d382aafbSBarry Smith /*MC 481d382aafbSBarry Smith PetscMalloc - Allocates memory 482d382aafbSBarry Smith 483eca87e8dSBarry Smith Synopsis: 484f2ba6396SBarry Smith #include "petscsys.h" 485eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 486eca87e8dSBarry Smith 487eca87e8dSBarry Smith Not Collective 488eca87e8dSBarry Smith 489d382aafbSBarry Smith Input Parameter: 490d382aafbSBarry Smith . m - number of bytes to allocate 491d382aafbSBarry Smith 492d382aafbSBarry Smith Output Parameter: 493d382aafbSBarry Smith . result - memory allocated 494d382aafbSBarry Smith 495d382aafbSBarry Smith Level: beginner 496d382aafbSBarry Smith 497d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 498d382aafbSBarry Smith 499d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 500d382aafbSBarry Smith properly handle not freeing the null pointer. 501d382aafbSBarry Smith 502d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 503d382aafbSBarry Smith 504d382aafbSBarry Smith Concepts: memory allocation 505d382aafbSBarry Smith 506d382aafbSBarry Smith M*/ 5072714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 508d382aafbSBarry Smith 509d382aafbSBarry Smith /*MC 510503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 511d382aafbSBarry Smith 512d382aafbSBarry Smith Synopsis: 513f2ba6396SBarry Smith #include "petscsys.h" 514d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 515d382aafbSBarry Smith 516eca87e8dSBarry Smith Not Collective 517eca87e8dSBarry Smith 518eca87e8dSBarry Smith Input Parameters: 519eca87e8dSBarry Smith . addr - address to align (any pointer type) 520eca87e8dSBarry Smith 521d382aafbSBarry Smith Level: developer 522d382aafbSBarry Smith 523d382aafbSBarry Smith .seealso: PetscMallocAlign() 524d382aafbSBarry Smith 525d382aafbSBarry Smith Concepts: memory allocation 526d382aafbSBarry Smith M*/ 527d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 528d382aafbSBarry Smith 529d382aafbSBarry Smith /*MC 530503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 531d382aafbSBarry Smith 532eca87e8dSBarry Smith Synopsis: 533f2ba6396SBarry Smith #include "petscsys.h" 534eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 535eca87e8dSBarry Smith 536eca87e8dSBarry Smith Not Collective 537eca87e8dSBarry Smith 538d382aafbSBarry Smith Input Parameter: 539d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 540d382aafbSBarry Smith . t1 - type of first memory elements 541d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 542d382aafbSBarry Smith - t2 - type of second memory elements 543d382aafbSBarry Smith 544d382aafbSBarry Smith Output Parameter: 545d382aafbSBarry Smith + r1 - memory allocated in first chunk 546d382aafbSBarry Smith - r2 - memory allocated in second chunk 547d382aafbSBarry Smith 548d382aafbSBarry Smith Level: developer 549d382aafbSBarry Smith 550d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 551d382aafbSBarry Smith 552d382aafbSBarry Smith Concepts: memory allocation 553d382aafbSBarry Smith 554d382aafbSBarry Smith M*/ 555d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 556d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 557d382aafbSBarry Smith #else 5582981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 559d382aafbSBarry Smith #endif 560d382aafbSBarry Smith 561d382aafbSBarry Smith /*MC 562503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 563d382aafbSBarry Smith 564eca87e8dSBarry Smith Synopsis: 565f2ba6396SBarry Smith #include "petscsys.h" 566eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 567eca87e8dSBarry Smith 568eca87e8dSBarry Smith Not Collective 569eca87e8dSBarry Smith 570d382aafbSBarry Smith Input Parameter: 571d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 572d382aafbSBarry Smith . t1 - type of first memory elements 573d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 574d382aafbSBarry Smith . t2 - type of second memory elements 575d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 576d382aafbSBarry Smith - t3 - type of third memory elements 577d382aafbSBarry Smith 578d382aafbSBarry Smith Output Parameter: 579d382aafbSBarry Smith + r1 - memory allocated in first chunk 580d382aafbSBarry Smith . r2 - memory allocated in second chunk 581d382aafbSBarry Smith - r3 - memory allocated in third chunk 582d382aafbSBarry Smith 583d382aafbSBarry Smith Level: developer 584d382aafbSBarry Smith 585d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 586d382aafbSBarry Smith 587d382aafbSBarry Smith Concepts: memory allocation 588d382aafbSBarry Smith 589d382aafbSBarry Smith M*/ 590d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 591d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 592d382aafbSBarry Smith #else 5933b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 594d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 595d382aafbSBarry Smith #endif 596d382aafbSBarry Smith 597d382aafbSBarry Smith /*MC 598503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 599d382aafbSBarry Smith 600eca87e8dSBarry Smith Synopsis: 601f2ba6396SBarry Smith #include "petscsys.h" 602eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 603eca87e8dSBarry Smith 604eca87e8dSBarry Smith Not Collective 605eca87e8dSBarry Smith 606d382aafbSBarry Smith Input Parameter: 607d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 608d382aafbSBarry Smith . t1 - type of first memory elements 609d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 610d382aafbSBarry Smith . t2 - type of second memory elements 611d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 612d382aafbSBarry Smith . t3 - type of third memory elements 613d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 614d382aafbSBarry Smith - t4 - type of fourth memory elements 615d382aafbSBarry Smith 616d382aafbSBarry Smith Output Parameter: 617d382aafbSBarry Smith + r1 - memory allocated in first chunk 618d382aafbSBarry Smith . r2 - memory allocated in second chunk 619d382aafbSBarry Smith . r3 - memory allocated in third chunk 620d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 621d382aafbSBarry Smith 622d382aafbSBarry Smith Level: developer 623d382aafbSBarry Smith 624d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 625d382aafbSBarry Smith 626d382aafbSBarry Smith Concepts: memory allocation 627d382aafbSBarry Smith 628d382aafbSBarry Smith M*/ 629d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 630d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 631d382aafbSBarry Smith #else 632d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6333b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 634d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 635d382aafbSBarry Smith #endif 636d382aafbSBarry Smith 637d382aafbSBarry Smith /*MC 638503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 639d382aafbSBarry Smith 640eca87e8dSBarry Smith Synopsis: 641f2ba6396SBarry Smith #include "petscsys.h" 642eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 643eca87e8dSBarry Smith 644eca87e8dSBarry Smith Not Collective 645eca87e8dSBarry Smith 646d382aafbSBarry Smith Input Parameter: 647d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 648d382aafbSBarry Smith . t1 - type of first memory elements 649d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 650d382aafbSBarry Smith . t2 - type of second memory elements 651d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 652d382aafbSBarry Smith . t3 - type of third memory elements 653d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 654d382aafbSBarry Smith . t4 - type of fourth memory elements 655d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 656d382aafbSBarry Smith - t5 - type of fifth memory elements 657d382aafbSBarry Smith 658d382aafbSBarry Smith Output Parameter: 659d382aafbSBarry Smith + r1 - memory allocated in first chunk 660d382aafbSBarry Smith . r2 - memory allocated in second chunk 661d382aafbSBarry Smith . r3 - memory allocated in third chunk 662d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 663d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 664d382aafbSBarry Smith 665d382aafbSBarry Smith Level: developer 666d382aafbSBarry Smith 667d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 668d382aafbSBarry Smith 669d382aafbSBarry Smith Concepts: memory allocation 670d382aafbSBarry Smith 671d382aafbSBarry Smith M*/ 672d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 673d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 674d382aafbSBarry Smith #else 675d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 6763b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 677d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 678d382aafbSBarry Smith #endif 679d382aafbSBarry Smith 680d382aafbSBarry Smith 681d382aafbSBarry Smith /*MC 682503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 683d382aafbSBarry Smith 684eca87e8dSBarry Smith Synopsis: 685f2ba6396SBarry Smith #include "petscsys.h" 686eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 687eca87e8dSBarry Smith 688eca87e8dSBarry Smith Not Collective 689eca87e8dSBarry Smith 690d382aafbSBarry Smith Input Parameter: 691d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 692d382aafbSBarry Smith . t1 - type of first memory elements 693d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 694d382aafbSBarry Smith . t2 - type of second memory elements 695d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 696d382aafbSBarry Smith . t3 - type of third memory elements 697d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 698d382aafbSBarry Smith . t4 - type of fourth memory elements 699d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 700d382aafbSBarry Smith . t5 - type of fifth memory elements 701d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 702d382aafbSBarry Smith - t6 - type of sixth memory elements 703d382aafbSBarry Smith 704d382aafbSBarry Smith Output Parameter: 705d382aafbSBarry Smith + r1 - memory allocated in first chunk 706d382aafbSBarry Smith . r2 - memory allocated in second chunk 707d382aafbSBarry Smith . r3 - memory allocated in third chunk 708d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 709d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 710d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 711d382aafbSBarry Smith 712d382aafbSBarry Smith Level: developer 713d382aafbSBarry Smith 714d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 715d382aafbSBarry Smith 716d382aafbSBarry Smith Concepts: memory allocation 717d382aafbSBarry Smith 718d382aafbSBarry Smith M*/ 719d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 720d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 721d382aafbSBarry Smith #else 722d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7233b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 724d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 725d382aafbSBarry Smith #endif 726d382aafbSBarry Smith 727d382aafbSBarry Smith /*MC 728503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 729d382aafbSBarry Smith 730eca87e8dSBarry Smith Synopsis: 731f2ba6396SBarry Smith #include "petscsys.h" 732eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 733eca87e8dSBarry Smith 734eca87e8dSBarry Smith Not Collective 735eca87e8dSBarry Smith 736d382aafbSBarry Smith Input Parameter: 737d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 738d382aafbSBarry Smith . t1 - type of first memory elements 739d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 740d382aafbSBarry Smith . t2 - type of second memory elements 741d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 742d382aafbSBarry Smith . t3 - type of third memory elements 743d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 744d382aafbSBarry Smith . t4 - type of fourth memory elements 745d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 746d382aafbSBarry Smith . t5 - type of fifth memory elements 747d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 748d382aafbSBarry Smith . t6 - type of sixth memory elements 749d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 750d382aafbSBarry Smith - t7 - type of sixth memory elements 751d382aafbSBarry Smith 752d382aafbSBarry Smith Output Parameter: 753d382aafbSBarry Smith + r1 - memory allocated in first chunk 754d382aafbSBarry Smith . r2 - memory allocated in second chunk 755d382aafbSBarry Smith . r3 - memory allocated in third chunk 756d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 757d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 758d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 759eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 760d382aafbSBarry Smith 761d382aafbSBarry Smith Level: developer 762d382aafbSBarry Smith 763d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 764d382aafbSBarry Smith 765d382aafbSBarry Smith Concepts: memory allocation 766d382aafbSBarry Smith 767d382aafbSBarry Smith M*/ 768d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 769d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 770d382aafbSBarry Smith #else 771d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 7723b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 773d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 774d382aafbSBarry Smith #endif 775d382aafbSBarry Smith 776d382aafbSBarry Smith /*MC 777503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 778d382aafbSBarry Smith 779eca87e8dSBarry Smith Synopsis: 780f2ba6396SBarry Smith #include "petscsys.h" 781eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 782eca87e8dSBarry Smith 783eca87e8dSBarry Smith Not Collective 784eca87e8dSBarry Smith 785d382aafbSBarry Smith Input Parameter: 786d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 787d382aafbSBarry Smith 788d382aafbSBarry Smith Output Parameter: 789d382aafbSBarry Smith . result - memory allocated 790d382aafbSBarry Smith 791d382aafbSBarry Smith Level: beginner 792d382aafbSBarry Smith 793ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 794d382aafbSBarry Smith 795d382aafbSBarry Smith Concepts: memory allocation 796d382aafbSBarry Smith 797d382aafbSBarry Smith M*/ 798d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 799ad0619ddSBarry Smith 800ad0619ddSBarry Smith /*MC 801ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 802ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 803ad0619ddSBarry Smith 804ad0619ddSBarry Smith Synopsis: 805f2ba6396SBarry Smith #include "petscsys.h" 806ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 807ad0619ddSBarry Smith 808ad0619ddSBarry Smith Not Collective 809ad0619ddSBarry Smith 810ad0619ddSBarry Smith Input Parameter: 811ad0619ddSBarry Smith + obj - object memory is logged to 812ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 813ad0619ddSBarry Smith 814ad0619ddSBarry Smith Output Parameter: 815ad0619ddSBarry Smith . result - memory allocated 816ad0619ddSBarry Smith 817ad0619ddSBarry Smith Level: developer 818ad0619ddSBarry Smith 819ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 820ad0619ddSBarry Smith 821ad0619ddSBarry Smith Concepts: memory allocation 822ad0619ddSBarry Smith 823ad0619ddSBarry Smith M*/ 8243bb1ff40SBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(A)) : 0)) 825d382aafbSBarry Smith 826d382aafbSBarry Smith /*MC 827d382aafbSBarry Smith PetscFree - Frees memory 828d382aafbSBarry Smith 829eca87e8dSBarry Smith Synopsis: 830f2ba6396SBarry Smith #include "petscsys.h" 831eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 832eca87e8dSBarry Smith 833eca87e8dSBarry Smith Not Collective 834eca87e8dSBarry Smith 835d382aafbSBarry Smith Input Parameter: 836d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 837d382aafbSBarry Smith 838d382aafbSBarry Smith Level: beginner 839d382aafbSBarry Smith 840d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 841d382aafbSBarry Smith 842d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 843d382aafbSBarry Smith 844d382aafbSBarry Smith Concepts: memory allocation 845d382aafbSBarry Smith 846d382aafbSBarry Smith M*/ 84712537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 848d382aafbSBarry Smith 849d382aafbSBarry Smith /*MC 850d382aafbSBarry Smith PetscFreeVoid - Frees memory 851d382aafbSBarry Smith 852d382aafbSBarry Smith Synopsis: 853f2ba6396SBarry Smith #include "petscsys.h" 854d382aafbSBarry Smith void PetscFreeVoid(void *memory) 855d382aafbSBarry Smith 856eca87e8dSBarry Smith Not Collective 857eca87e8dSBarry Smith 858eca87e8dSBarry Smith Input Parameter: 859eca87e8dSBarry Smith . memory - memory to free 860eca87e8dSBarry Smith 861d382aafbSBarry Smith Level: beginner 862d382aafbSBarry Smith 863d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 864d382aafbSBarry Smith 865d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 866d382aafbSBarry Smith 867d382aafbSBarry Smith Concepts: memory allocation 868d382aafbSBarry Smith 869d382aafbSBarry Smith M*/ 8702714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 871d382aafbSBarry Smith 872d382aafbSBarry Smith 873d382aafbSBarry Smith /*MC 874d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 875d382aafbSBarry Smith 876eca87e8dSBarry Smith Synopsis: 877f2ba6396SBarry Smith #include "petscsys.h" 878eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 879eca87e8dSBarry Smith 880eca87e8dSBarry Smith Not Collective 881eca87e8dSBarry Smith 882d382aafbSBarry Smith Input Parameter: 883d382aafbSBarry Smith + memory1 - memory to free 884d382aafbSBarry Smith - memory2 - 2nd memory to free 885d382aafbSBarry Smith 886d382aafbSBarry Smith Level: developer 887d382aafbSBarry Smith 888d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 889d382aafbSBarry Smith 890d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 891d382aafbSBarry Smith 892d382aafbSBarry Smith Concepts: memory allocation 893d382aafbSBarry Smith 894d382aafbSBarry Smith M*/ 895d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 896d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 897d382aafbSBarry Smith #else 89881dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 899d382aafbSBarry Smith #endif 900d382aafbSBarry Smith 901d382aafbSBarry Smith /*MC 902d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 903d382aafbSBarry Smith 904eca87e8dSBarry Smith Synopsis: 905f2ba6396SBarry Smith #include "petscsys.h" 906eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 907eca87e8dSBarry Smith 908eca87e8dSBarry Smith Not Collective 909eca87e8dSBarry Smith 910d382aafbSBarry Smith Input Parameter: 911d382aafbSBarry Smith + memory1 - memory to free 912d382aafbSBarry Smith . memory2 - 2nd memory to free 913d382aafbSBarry Smith - memory3 - 3rd memory to free 914d382aafbSBarry Smith 915d382aafbSBarry Smith Level: developer 916d382aafbSBarry Smith 917d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 918d382aafbSBarry Smith 919d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 920d382aafbSBarry Smith 921d382aafbSBarry Smith Concepts: memory allocation 922d382aafbSBarry Smith 923d382aafbSBarry Smith M*/ 924d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 925d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 926d382aafbSBarry Smith #else 92781dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 928d382aafbSBarry Smith #endif 929d382aafbSBarry Smith 930d382aafbSBarry Smith /*MC 931d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 932d382aafbSBarry Smith 933eca87e8dSBarry Smith Synopsis: 934f2ba6396SBarry Smith #include "petscsys.h" 935eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 936eca87e8dSBarry Smith 937eca87e8dSBarry Smith Not Collective 938eca87e8dSBarry Smith 939d382aafbSBarry Smith Input Parameter: 940d382aafbSBarry Smith + m1 - memory to free 941d382aafbSBarry Smith . m2 - 2nd memory to free 942d382aafbSBarry Smith . m3 - 3rd memory to free 943d382aafbSBarry Smith - m4 - 4th memory to free 944d382aafbSBarry Smith 945d382aafbSBarry Smith Level: developer 946d382aafbSBarry Smith 947d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 948d382aafbSBarry Smith 949d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 950d382aafbSBarry Smith 951d382aafbSBarry Smith Concepts: memory allocation 952d382aafbSBarry Smith 953d382aafbSBarry Smith M*/ 954d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 955d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 956d382aafbSBarry Smith #else 95781dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 958d382aafbSBarry Smith #endif 959d382aafbSBarry Smith 960d382aafbSBarry Smith /*MC 961d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 962d382aafbSBarry Smith 963eca87e8dSBarry Smith Synopsis: 964f2ba6396SBarry Smith #include "petscsys.h" 965eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 966eca87e8dSBarry Smith 967eca87e8dSBarry Smith Not Collective 968eca87e8dSBarry Smith 969d382aafbSBarry Smith Input Parameter: 970d382aafbSBarry Smith + m1 - memory to free 971d382aafbSBarry Smith . m2 - 2nd memory to free 972d382aafbSBarry Smith . m3 - 3rd memory to free 973d382aafbSBarry Smith . m4 - 4th memory to free 974d382aafbSBarry Smith - m5 - 5th memory to free 975d382aafbSBarry Smith 976d382aafbSBarry Smith Level: developer 977d382aafbSBarry Smith 978d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 979d382aafbSBarry Smith 980d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 981d382aafbSBarry Smith 982d382aafbSBarry Smith Concepts: memory allocation 983d382aafbSBarry Smith 984d382aafbSBarry Smith M*/ 985d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 986d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 987d382aafbSBarry Smith #else 98881dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 989d382aafbSBarry Smith #endif 990d382aafbSBarry Smith 991d382aafbSBarry Smith 992d382aafbSBarry Smith /*MC 993d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 994d382aafbSBarry Smith 995eca87e8dSBarry Smith Synopsis: 996f2ba6396SBarry Smith #include "petscsys.h" 997eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 998eca87e8dSBarry Smith 999eca87e8dSBarry Smith Not Collective 1000eca87e8dSBarry Smith 1001d382aafbSBarry Smith Input Parameter: 1002d382aafbSBarry Smith + m1 - memory to free 1003d382aafbSBarry Smith . m2 - 2nd memory to free 1004d382aafbSBarry Smith . m3 - 3rd memory to free 1005d382aafbSBarry Smith . m4 - 4th memory to free 1006d382aafbSBarry Smith . m5 - 5th memory to free 1007d382aafbSBarry Smith - m6 - 6th memory to free 1008d382aafbSBarry Smith 1009d382aafbSBarry Smith 1010d382aafbSBarry Smith Level: developer 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1013d382aafbSBarry Smith 1014d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1015d382aafbSBarry Smith 1016d382aafbSBarry Smith Concepts: memory allocation 1017d382aafbSBarry Smith 1018d382aafbSBarry Smith M*/ 1019d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1020d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1021d382aafbSBarry Smith #else 102281dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1023d382aafbSBarry Smith #endif 1024d382aafbSBarry Smith 1025d382aafbSBarry Smith /*MC 1026d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1027d382aafbSBarry Smith 1028eca87e8dSBarry Smith Synopsis: 1029f2ba6396SBarry Smith #include "petscsys.h" 1030eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1031eca87e8dSBarry Smith 1032eca87e8dSBarry Smith Not Collective 1033eca87e8dSBarry Smith 1034d382aafbSBarry Smith Input Parameter: 1035d382aafbSBarry Smith + m1 - memory to free 1036d382aafbSBarry Smith . m2 - 2nd memory to free 1037d382aafbSBarry Smith . m3 - 3rd memory to free 1038d382aafbSBarry Smith . m4 - 4th memory to free 1039d382aafbSBarry Smith . m5 - 5th memory to free 1040d382aafbSBarry Smith . m6 - 6th memory to free 1041d382aafbSBarry Smith - m7 - 7th memory to free 1042d382aafbSBarry Smith 1043d382aafbSBarry Smith 1044d382aafbSBarry Smith Level: developer 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1049d382aafbSBarry Smith PetscMalloc7() 1050d382aafbSBarry Smith 1051d382aafbSBarry Smith Concepts: memory allocation 1052d382aafbSBarry Smith 1053d382aafbSBarry Smith M*/ 1054d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1055d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1056d382aafbSBarry Smith #else 105781dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1058d382aafbSBarry Smith #endif 1059d382aafbSBarry Smith 1060014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 1061014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 1062014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 1063014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1064d382aafbSBarry Smith 1065d382aafbSBarry Smith /* 1066a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1067a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1068a5057860SBarry Smith timing etc. 1069a5057860SBarry Smith */ 1070a5057860SBarry Smith typedef double PetscLogDouble; 1071a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1072a5057860SBarry Smith 1073a5057860SBarry Smith /* 107466d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1075d382aafbSBarry Smith */ 1076014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1077014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1078014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1079014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1080014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 10810acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1082014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 1083014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1084574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1085014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith /*E 1088d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1089d382aafbSBarry Smith 1090d382aafbSBarry Smith Level: beginner 1091d382aafbSBarry Smith 1092d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1093d382aafbSBarry Smith 1094d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1095d382aafbSBarry Smith PetscDataTypeGetSize() 1096d382aafbSBarry Smith 1097d382aafbSBarry Smith E*/ 1098d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 10992d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 11006a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1101d382aafbSBarry Smith 1102d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1103d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1104d382aafbSBarry Smith #else 1105ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1106d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 110759a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 110859a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1109d382aafbSBarry Smith #else 1110d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1111d382aafbSBarry Smith #endif 1112d382aafbSBarry Smith #endif 1113ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1114d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 111559a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 111659a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1117d382aafbSBarry Smith #else 1118d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1119d382aafbSBarry Smith #endif 1120d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1121d382aafbSBarry Smith 1122014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1123014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1124014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 11258e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1126d382aafbSBarry Smith 1127d382aafbSBarry Smith /* 1128d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1129d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1130d382aafbSBarry Smith functionality and/or error checking. 1131d382aafbSBarry Smith */ 1132014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1133014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1134014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1135014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1136d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1137014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1138014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1140014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1141014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1142014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1143014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1144014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1145014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1146014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1147014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 11482f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1149014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1150014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1151014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1152014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11532c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1154014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1155014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 115647340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 11576fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1158014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1159d382aafbSBarry Smith 1160573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1161573b0fb4SBarry Smith 1162d382aafbSBarry Smith /*S 1163d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith Level: intermediate 1166d382aafbSBarry Smith 1167d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1168d382aafbSBarry Smith S*/ 1169d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1170d382aafbSBarry Smith 1171014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1172014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1173014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1174d382aafbSBarry Smith 1175a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1176a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1177a53986e1SJed Brown 1178d382aafbSBarry Smith /* 1179d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1180d382aafbSBarry Smith */ 1181014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 11827c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1183014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 11842414b3c7SJed Brown #else 11852414b3c7SJed Brown #define MPIU_SUM MPI_SUM 11862414b3c7SJed Brown #endif 11872414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1188014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1189014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1190d9822059SBarry Smith #else 1191d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1192d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1193d9822059SBarry Smith #endif 1194014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1195d382aafbSBarry Smith 1196014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1197014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1198eb3f98d2SBarry Smith 1199d382aafbSBarry Smith /*S 1200d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith Level: beginner 1203d382aafbSBarry Smith 12042981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1205d382aafbSBarry Smith 12061890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1207d382aafbSBarry Smith S*/ 1208d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1209d382aafbSBarry Smith 1210270bf2e7SJed Brown /*MC 1211127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1212127c8a3bSJed Brown 1213127c8a3bSJed Brown Level: developer 1214127c8a3bSJed Brown 1215127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1216127c8a3bSJed Brown 1217127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1218127c8a3bSJed Brown M*/ 1219127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1220127c8a3bSJed Brown 1221127c8a3bSJed Brown /*MC 1222270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1223270bf2e7SJed Brown 1224270bf2e7SJed Brown Level: developer 1225270bf2e7SJed Brown 1226270bf2e7SJed Brown Notes: 1227270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1228270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1229270bf2e7SJed Brown 1230*8dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1231270bf2e7SJed Brown M*/ 1232270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1233270bf2e7SJed Brown 1234d382aafbSBarry Smith /*S 1235140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1236d382aafbSBarry Smith by string name 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith Level: advanced 1239d382aafbSBarry Smith 1240140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1241d382aafbSBarry Smith S*/ 1242140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1243d382aafbSBarry Smith 1244d382aafbSBarry Smith /*E 1245d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1246d382aafbSBarry Smith 1247d382aafbSBarry Smith Level: beginner 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1252d382aafbSBarry Smith 1253d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1258d382aafbSBarry Smith 1259d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1260d382aafbSBarry Smith E*/ 1261d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1262d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1263d6a4318aSJed Brown 1264639ff905SBarry Smith /* 1265639ff905SBarry Smith Defines PETSc error handling. 1266639ff905SBarry Smith */ 1267639ff905SBarry Smith #include <petscerror.h> 1268d382aafbSBarry Smith 12690700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1270014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1271014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1272014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1273d382aafbSBarry Smith 1274d382aafbSBarry Smith /* 1275d382aafbSBarry Smith Routines that get memory usage information from the OS 1276d382aafbSBarry Smith */ 1277014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1280d382aafbSBarry Smith 1281014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1282014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1283d382aafbSBarry Smith 1284d382aafbSBarry Smith /* 1285d382aafbSBarry Smith Initialization of PETSc 1286d382aafbSBarry Smith */ 1287014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1288014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1289014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1290014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1291014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1292014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1293014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1294014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1295014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1296014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1297d382aafbSBarry Smith 1298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1299607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1300d382aafbSBarry Smith 1301014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD; 1302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1303014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void); 1305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1308014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1309d382aafbSBarry Smith 1310014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1314d382aafbSBarry Smith 1315d382aafbSBarry Smith /* 1316d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 13172981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1318d382aafbSBarry Smith */ 1319638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1320638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1321638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith /* 1324d382aafbSBarry Smith Functions that can act on any PETSc object. 1325d382aafbSBarry Smith */ 1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1333014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1335014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1339014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1345bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1346bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1354d382aafbSBarry Smith 1355665c2dedSJed Brown #include <petscviewertypes.h> 1356639ff905SBarry Smith #include <petscoptions.h> 1357639ff905SBarry Smith 1358639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1359dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1360639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 13610005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 13620005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1366014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1375d382aafbSBarry Smith 1376ec7429eaSBarry Smith #if defined(PETSC_HAVE_AMS) 1377f05ece33SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSViewOff(PetscObject); 1378b90c6cbeSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSSetBlock(PetscObject,PetscBool); 1379b90c6cbeSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSBlock(PetscObject); 1380ec7429eaSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSGrantAccess(PetscObject); 1381ec7429eaSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSTakeAccess(PetscObject); 138215681b3cSBarry Smith PETSC_EXTERN void PetscStackAMSGrantAccess(void); 138315681b3cSBarry Smith PETSC_EXTERN void PetscStackAMSTakeAccess(void); 138415681b3cSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewAMS(void); 138515681b3cSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackAMSViewOff(void); 138615681b3cSBarry Smith 1387ec7429eaSBarry Smith #else 1388f05ece33SBarry Smith #define PetscObjectAMSViewOff(obj) 0 1389ec7429eaSBarry Smith #define PetscObjectAMSSetBlock(obj,flg) 0 1390ec7429eaSBarry Smith #define PetscObjectAMSBlock(obj) 0 1391ec7429eaSBarry Smith #define PetscObjectAMSGrantAccess(obj) 0 1392ec7429eaSBarry Smith #define PetscObjectAMSTakeAccess(obj) 0 139315681b3cSBarry Smith #define PetscStackViewAMS() 0 139415681b3cSBarry Smith #define PetscStackAMSViewOff() 0 139515681b3cSBarry Smith #define PetscStackAMSTakeAccess() 139615681b3cSBarry Smith #define PetscStackAMSGrantAccess() 139715681b3cSBarry Smith 1398ec7429eaSBarry Smith #endif 1399b90c6cbeSBarry Smith 14007d5d4d99SBarry Smith typedef void* PetscDLHandle; 1401e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 140282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 140382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 140482b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 14057d5d4d99SBarry Smith 1406d382aafbSBarry Smith 14075fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1408a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 14095fe58b6fSBarry Smith #endif 14107eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1411a64a8e02SBarry Smith 1412d382aafbSBarry Smith /*S 1413140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1414d382aafbSBarry Smith 14151d0fab5eSBarry Smith Level: developer 1416d382aafbSBarry Smith 14171d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14181d0fab5eSBarry Smith 1419140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1420d382aafbSBarry Smith S*/ 1421140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1422d382aafbSBarry Smith 1423140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1424140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1425140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1426140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1427140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1428140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1429d382aafbSBarry Smith 1430d382aafbSBarry Smith /* 1431503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1432d382aafbSBarry Smith link libraries that will be loaded as needed. 1433d382aafbSBarry Smith */ 1434a240a19fSJed Brown 1435a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1436a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1437140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 14381c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 14391c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1440140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1441140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1442140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1443140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1444d382aafbSBarry Smith 1445d382aafbSBarry Smith /*S 1446d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1447d382aafbSBarry Smith 1448d382aafbSBarry Smith Level: advanced 1449d382aafbSBarry Smith 145020de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1451d382aafbSBarry Smith 1452d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1453d382aafbSBarry Smith S*/ 1454d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1455014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1463d382aafbSBarry Smith 1464d382aafbSBarry Smith /* 1465d382aafbSBarry Smith Useful utility routines 1466d382aafbSBarry Smith */ 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1473d382aafbSBarry Smith 1474503cfb0cSBarry Smith /* 1475ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1476503cfb0cSBarry Smith 1477503cfb0cSBarry Smith Notes: This is useful in cases like 1478503cfb0cSBarry Smith $ int *a; 1479ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1480ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1481503cfb0cSBarry Smith */ 1482d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1483503cfb0cSBarry Smith 1484cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1485cae2f346SBarry Smith # include <valgrind/valgrind.h> 1486cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1487cae2f346SBarry Smith #else 1488cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1489cae2f346SBarry Smith #endif 1490cae2f346SBarry Smith 1491238ccf28SShri Abhyankar 1492d382aafbSBarry Smith /*MC 1493d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1494d382aafbSBarry Smith 1495d382aafbSBarry Smith Synopsis: 1496f2ba6396SBarry Smith #include "petscsys.h" 1497d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1498d382aafbSBarry Smith 1499eca87e8dSBarry Smith Not Collective 1500eca87e8dSBarry Smith 1501d382aafbSBarry Smith Input Parameters: 1502d382aafbSBarry Smith . format - the usual printf() format string 1503d382aafbSBarry Smith 1504d382aafbSBarry Smith Level: developer 1505d382aafbSBarry Smith 1506d382aafbSBarry Smith Fortran Note: 1507d382aafbSBarry Smith This routine is not supported in Fortran. 1508d382aafbSBarry Smith 1509d382aafbSBarry Smith Concepts: help messages^printing 1510d382aafbSBarry Smith Concepts: printing^help messages 1511d382aafbSBarry Smith 1512d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1513d382aafbSBarry Smith M*/ 1514014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1515d382aafbSBarry Smith 1516fcfd50ebSBarry Smith /* 1517fcfd50ebSBarry Smith Defines PETSc profiling. 1518fcfd50ebSBarry Smith */ 15192c8e378dSBarry Smith #include <petsclog.h> 1520fcfd50ebSBarry Smith 1521b90c6cbeSBarry Smith 1522fcfd50ebSBarry Smith 1523fcfd50ebSBarry Smith /* 1524fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1525fcfd50ebSBarry Smith */ 1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1533fcfd50ebSBarry Smith 1534fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1535fcfd50ebSBarry Smith #include <stdarg.h> 1536014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1537014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1539fcfd50ebSBarry Smith 1540fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1542fcfd50ebSBarry Smith #endif 1543fcfd50ebSBarry Smith 1544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1547d382aafbSBarry Smith 1548d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 155096a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 155174ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1552d382aafbSBarry Smith #endif 1553d382aafbSBarry Smith 1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1555014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1558014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1561d382aafbSBarry Smith 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1563d382aafbSBarry Smith 1564d382aafbSBarry Smith /*S 1565d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1566d382aafbSBarry Smith 1567d382aafbSBarry Smith Level: advanced 1568d382aafbSBarry Smith 1569d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1570d382aafbSBarry Smith S*/ 1571014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1572d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1578d382aafbSBarry Smith 1579d382aafbSBarry Smith /* 1580d382aafbSBarry Smith For use in debuggers 1581d382aafbSBarry Smith */ 1582014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1583014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1587d382aafbSBarry Smith 1588a663daf8SBarry Smith #include <stddef.h> 1589d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1590d382aafbSBarry Smith #include <memory.h> 1591d382aafbSBarry Smith #endif 1592d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1593d382aafbSBarry Smith #include <stdlib.h> 1594d382aafbSBarry Smith #endif 15956c7e564aSBarry Smith 15964a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1597d382aafbSBarry Smith #include <xmmintrin.h> 1598d382aafbSBarry Smith #endif 1599d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1600d382aafbSBarry Smith #include <stdint.h> 1601d382aafbSBarry Smith #endif 1602d382aafbSBarry Smith 1603fcfd50ebSBarry Smith #undef __FUNCT__ 1604fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1605d382aafbSBarry Smith /*@C 1606d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1607d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1608d382aafbSBarry Smith PetscMemmove() in that case. 1609d382aafbSBarry Smith 1610d382aafbSBarry Smith Not Collective 1611d382aafbSBarry Smith 1612d382aafbSBarry Smith Input Parameters: 1613d382aafbSBarry Smith + b - pointer to initial memory space 1614d382aafbSBarry Smith - n - length (in bytes) of space to copy 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith Output Parameter: 1617d382aafbSBarry Smith . a - pointer to copy space 1618d382aafbSBarry Smith 1619d382aafbSBarry Smith Level: intermediate 1620d382aafbSBarry Smith 1621d382aafbSBarry Smith Compile Option: 1622d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1623d382aafbSBarry Smith for memory copies on double precision values. 1624d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1625d382aafbSBarry Smith for memory copies on double precision values. 1626d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1627d382aafbSBarry Smith for memory copies on double precision values. 1628d382aafbSBarry Smith 1629d382aafbSBarry Smith Note: 1630d382aafbSBarry Smith This routine is analogous to memcpy(). 1631d382aafbSBarry Smith 1632503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1633503cfb0cSBarry Smith 1634d382aafbSBarry Smith Concepts: memory^copying 1635d382aafbSBarry Smith Concepts: copying^memory 1636d382aafbSBarry Smith 1637d382aafbSBarry Smith .seealso: PetscMemmove() 1638d382aafbSBarry Smith 1639d382aafbSBarry Smith @*/ 16407087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1641d382aafbSBarry Smith { 1642d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1643d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1644d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1645a7e36092SMatthew G Knepley PetscFunctionBegin; 1646e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1647e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1648a7e36092SMatthew G Knepley #else 1649d382aafbSBarry Smith PetscFunctionBegin; 1650a7e36092SMatthew G Knepley #endif 1651d382aafbSBarry Smith if (a != b) { 1652d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1653e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1654d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1655d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1656d382aafbSBarry Smith #endif 1657d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1658d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1659d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1660d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1661c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1662c5df96a5SBarry Smith PetscErrorCode ierr; 1663c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 16648b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1665d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1666d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1667d382aafbSBarry Smith #else 1668d382aafbSBarry Smith size_t i; 1669d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1670d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1671d382aafbSBarry Smith #endif 1672d382aafbSBarry Smith } else { 1673d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1674d382aafbSBarry Smith } 1675d382aafbSBarry Smith #else 1676d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1677d382aafbSBarry Smith #endif 1678d382aafbSBarry Smith } 1679d382aafbSBarry Smith PetscFunctionReturn(0); 1680d382aafbSBarry Smith } 1681d382aafbSBarry Smith 1682d382aafbSBarry Smith /*@C 1683d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1684d382aafbSBarry Smith 1685d382aafbSBarry Smith Not Collective 1686d382aafbSBarry Smith 1687d382aafbSBarry Smith Input Parameters: 1688d382aafbSBarry Smith + a - pointer to beginning memory location 1689d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1690d382aafbSBarry Smith 1691d382aafbSBarry Smith Level: intermediate 1692d382aafbSBarry Smith 1693d382aafbSBarry Smith Compile Option: 1694d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1695d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1696d382aafbSBarry Smith 1697503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1698503cfb0cSBarry Smith 1699d382aafbSBarry Smith Concepts: memory^zeroing 1700d382aafbSBarry Smith Concepts: zeroing^memory 1701d382aafbSBarry Smith 1702d382aafbSBarry Smith .seealso: PetscMemcpy() 1703d382aafbSBarry Smith @*/ 17047087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1705d382aafbSBarry Smith { 1706d382aafbSBarry Smith if (n > 0) { 1707d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1708e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1709d382aafbSBarry Smith #endif 1710d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1711d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1712d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1713d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1714d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1715d382aafbSBarry Smith } else { 1716d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1717d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1718d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1719d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1720d382aafbSBarry Smith } else { 1721d382aafbSBarry Smith #endif 1722d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1723d382aafbSBarry Smith bzero((char *)a,n); 1724d382aafbSBarry Smith #else 1725d382aafbSBarry Smith memset((char*)a,0,n); 1726d382aafbSBarry Smith #endif 1727d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1728d382aafbSBarry Smith } 1729d382aafbSBarry Smith #endif 1730d382aafbSBarry Smith } 1731d382aafbSBarry Smith return 0; 1732d382aafbSBarry Smith } 1733d382aafbSBarry Smith 1734d382aafbSBarry Smith /*MC 1735d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1736d382aafbSBarry Smith 1737eca87e8dSBarry Smith Synopsis: 1738f2ba6396SBarry Smith #include "petscsys.h" 1739eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1740eca87e8dSBarry Smith 1741d382aafbSBarry Smith Not Collective 1742d382aafbSBarry Smith 1743d382aafbSBarry Smith Input Parameters: 1744d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1745d382aafbSBarry Smith . n - number of elements to fetch 1746d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 174750d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1748d382aafbSBarry Smith 1749d382aafbSBarry Smith Level: developer 1750d382aafbSBarry Smith 1751d382aafbSBarry Smith Notes: 1752d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1753d382aafbSBarry Smith 175450d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 175550d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 175650d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 175763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 175863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 175963cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1760d382aafbSBarry Smith 1761d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1762d382aafbSBarry Smith address). 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith Concepts: memory 1765d382aafbSBarry Smith M*/ 1766d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1767d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1768d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1769d382aafbSBarry Smith } while (0) 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith /* 1772d382aafbSBarry Smith Determine if some of the kernel computation routines use 1773d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1774d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1775d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1776e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1777d382aafbSBarry Smith */ 1778d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1779d382aafbSBarry Smith 1780d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1781d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1782d382aafbSBarry Smith #endif 1783d382aafbSBarry Smith 17845a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 17855a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1786d382aafbSBarry Smith #endif 1787d382aafbSBarry Smith 1788d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1789d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1790d382aafbSBarry Smith #endif 1791d382aafbSBarry Smith 1792d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1793d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1794d382aafbSBarry Smith #endif 1795d382aafbSBarry Smith 1796d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1797d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1798d382aafbSBarry Smith #endif 1799d382aafbSBarry Smith 1800d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1801d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1802d382aafbSBarry Smith #endif 1803d382aafbSBarry Smith 1804d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1805d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1806d382aafbSBarry Smith #endif 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1809d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1810d382aafbSBarry Smith #endif 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1813d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1814d382aafbSBarry Smith #endif 1815d382aafbSBarry Smith 1816d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1817d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1818d382aafbSBarry Smith #endif 1819d382aafbSBarry Smith 1820d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1821d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1822d382aafbSBarry Smith #endif 1823d382aafbSBarry Smith 1824d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1825d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1826d382aafbSBarry Smith #endif 1827d382aafbSBarry Smith 1828d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1829d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1830d382aafbSBarry Smith #endif 1831d382aafbSBarry Smith 1832d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1833d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1834d382aafbSBarry Smith #endif 1835d382aafbSBarry Smith 1836d382aafbSBarry Smith #endif 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith /* 1839d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1840d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1841d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1842d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1843d382aafbSBarry Smith ugly extern "C" {} wrappers. 1844d382aafbSBarry Smith */ 1845d382aafbSBarry Smith #if defined(__cplusplus) 1846d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1847d382aafbSBarry Smith #define EXTERN_C_END } 1848d382aafbSBarry Smith #else 1849d382aafbSBarry Smith #define EXTERN_C_BEGIN 1850d382aafbSBarry Smith #define EXTERN_C_END 1851d382aafbSBarry Smith #endif 1852d382aafbSBarry Smith 1853d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith /*MC 1856d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1857d382aafbSBarry Smith communication 1858d382aafbSBarry Smith 1859d382aafbSBarry Smith Level: beginner 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1864d382aafbSBarry Smith M*/ 1865d382aafbSBarry Smith 1866d382aafbSBarry Smith /*MC 1867d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1868d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1869d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith 1872d382aafbSBarry Smith Level: beginner 1873d382aafbSBarry Smith 1874d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1875d382aafbSBarry Smith M*/ 1876d382aafbSBarry Smith 1877d382aafbSBarry Smith /*MC 18788619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 18798619c96cSJed Brown 18808619c96cSJed Brown Synopsis: 18818619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 18828619c96cSJed Brown #include <petscsys.h> 18838619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 18848619c96cSJed Brown 18858619c96cSJed Brown Level: beginner 18868619c96cSJed Brown 18878619c96cSJed Brown Note: 18888619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 18898619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 18908619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 18918619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 18928619c96cSJed Brown 18938619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 18948619c96cSJed Brown M*/ 18958619c96cSJed Brown 18968619c96cSJed Brown /*MC 1897d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith Level: beginner 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1902d382aafbSBarry Smith M*/ 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith /*MC 1905d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1906d382aafbSBarry Smith Level: beginner 1907d382aafbSBarry Smith 1908d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 1909d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 1912d382aafbSBarry Smith M*/ 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith /*MC 1915d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 1916d382aafbSBarry Smith 1917d382aafbSBarry Smith Level: beginner 1918d382aafbSBarry Smith 1919d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 1920d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 1923d382aafbSBarry Smith M*/ 1924d382aafbSBarry Smith 1925d382aafbSBarry Smith /*MC 1926d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 1927d382aafbSBarry Smith 1928d382aafbSBarry Smith Level: beginner 1929d382aafbSBarry Smith 1930d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 1931d382aafbSBarry Smith pass this value 1932d382aafbSBarry Smith 1933d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 1934d382aafbSBarry Smith M*/ 1935d382aafbSBarry Smith 1936d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1937d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 1938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1940d382aafbSBarry Smith #else 1941d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 1942d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 1943d382aafbSBarry Smith #endif 1944d382aafbSBarry Smith #endif 1945d382aafbSBarry Smith 1946d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 1947d382aafbSBarry Smith 1948d382aafbSBarry Smith /* Limit MPI to 32-bits */ 1949d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 1950d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 1951d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 1952d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 1953d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 1954d382aafbSBarry Smith 1955c5df96a5SBarry Smith #undef __FUNCT__ 1956c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 1957c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 1958c5df96a5SBarry Smith { 1959c5df96a5SBarry Smith PetscFunctionBegin; 1960c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 1961c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 1962c5df96a5SBarry Smith #endif 1963c5df96a5SBarry Smith *b = (PetscBLASInt)(a); 1964c5df96a5SBarry Smith PetscFunctionReturn(0); 1965c5df96a5SBarry Smith } 1966c5df96a5SBarry Smith 19674dc2109aSBarry Smith #undef __FUNCT__ 19684dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 19694dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 19704dc2109aSBarry Smith { 19714dc2109aSBarry Smith PetscFunctionBegin; 19724dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 19734dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 19744dc2109aSBarry Smith #endif 19754dc2109aSBarry Smith *b = (PetscMPIInt)(a); 19764dc2109aSBarry Smith PetscFunctionReturn(0); 19774dc2109aSBarry Smith } 19784dc2109aSBarry Smith 1979c5df96a5SBarry Smith 1980d382aafbSBarry Smith /* 19812981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 1982d382aafbSBarry Smith */ 1983d382aafbSBarry Smith #if defined(hz) 1984d382aafbSBarry Smith #undef hz 1985d382aafbSBarry Smith #endif 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 1991d382aafbSBarry Smith #include <limits.h> 1992d382aafbSBarry Smith #endif 1993d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 1994d382aafbSBarry Smith #include <sys/param.h> 1995d382aafbSBarry Smith #endif 1996d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 1997d382aafbSBarry Smith #include <sys/types.h> 1998d382aafbSBarry Smith #endif 1999d382aafbSBarry Smith #if defined(MAXPATHLEN) 2000d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2001d382aafbSBarry Smith #elif defined(MAX_PATH) 2002d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2003d382aafbSBarry Smith #elif defined(_MAX_PATH) 2004d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2005d382aafbSBarry Smith #else 2006d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2007d382aafbSBarry Smith #endif 2008d382aafbSBarry Smith 2009d382aafbSBarry Smith /* Special support for C++ */ 20102c280183SJed Brown #if defined(PETSC_CLANGUAGE_CXX) && defined(__cplusplus) 20112c8e378dSBarry Smith #include <petscsys.hh> 20122c8e378dSBarry Smith #endif 20136c7e564aSBarry Smith 2014d382aafbSBarry Smith /*MC 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2017d382aafbSBarry Smith 2018d382aafbSBarry Smith $ 1) classic Fortran 77 style 2019d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2020d382aafbSBarry Smith $ XXX variablename 2021d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2022d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2023d382aafbSBarry Smith $ 2024d382aafbSBarry Smith $ 2) classic Fortran 90 style 2025d1716517SSatish Balay $#include "finclude/petscXXX.h" 2026d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2027d382aafbSBarry Smith $ XXX variablename 2028d382aafbSBarry Smith $ 2029d382aafbSBarry Smith $ 3) Using Fortran modules 2030d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2031d382aafbSBarry Smith $ use petscXXXX 2032d382aafbSBarry Smith $ XXX variablename 2033d382aafbSBarry Smith $ 2034d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2035d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2036d382aafbSBarry Smith $ use petscXXXX 2037d382aafbSBarry Smith $ type(XXX) variablename 2038e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2039d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2040d382aafbSBarry Smith 2041d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2044d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2045d382aafbSBarry Smith $ integer variablename 2046d382aafbSBarry Smith $ 2047d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2048d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2051d382aafbSBarry Smith for only a few PETSc functions. 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2054d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2055d382aafbSBarry Smith you cannot have something like 2056d382aafbSBarry Smith $ PetscInt row,col 2057d382aafbSBarry Smith $ PetscScalar val 2058d382aafbSBarry Smith $ ... 2059d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2060d382aafbSBarry Smith You must instead have 2061d382aafbSBarry Smith $ PetscInt row(1),col(1) 2062d382aafbSBarry Smith $ PetscScalar val(1) 2063d382aafbSBarry Smith $ ... 2064d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith 2067d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2068d382aafbSBarry Smith 2069d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2070d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2073d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2074d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2077e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2078d382aafbSBarry Smith 2079d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2080d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2083d382aafbSBarry Smith automatically by "make allfortranstubs". 2084d382aafbSBarry Smith 2085e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2086d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2087d382aafbSBarry Smith include their predecessors 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith Level: beginner 2090d382aafbSBarry Smith 2091d382aafbSBarry Smith M*/ 2092d382aafbSBarry Smith 2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 209927710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2100d382aafbSBarry Smith 2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 210360e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 210817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 210917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2113014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2114745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2115014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2116014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2118014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2119d382aafbSBarry Smith 2120014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2121014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2122d382aafbSBarry Smith 212376bdecfbSBarry Smith /*J 2124d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith Level: beginner 2127d382aafbSBarry Smith 2128e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2129d382aafbSBarry Smith with the option --download-sprng 2130d382aafbSBarry Smith 21318f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 213276bdecfbSBarry Smith J*/ 213319fd82e9SBarry Smith typedef const char* PetscRandomType; 2134d382aafbSBarry Smith #define PETSCRAND "rand" 2135d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2136d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith /* Logging support */ 2139014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2140d382aafbSBarry Smith 2141607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2142d382aafbSBarry Smith 2143d382aafbSBarry Smith /*S 2144d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith Level: intermediate 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith Concepts: random numbers 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2151d382aafbSBarry Smith S*/ 2152d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2155140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2156014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2157d382aafbSBarry Smith 2158607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2159bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 216019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2161014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 216219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2163146574abSBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,const char[],const char[]); 2164014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2165d382aafbSBarry Smith 2166014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2167014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2168014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2169014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2170014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2171014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2172014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2173014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2174014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2175d382aafbSBarry Smith 2176014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2177014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2178014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2179014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2180014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2181014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2182014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2183d382aafbSBarry Smith 2184014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2185014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2186014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2187014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2188014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2189014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2190014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2191014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2192014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2193014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2194014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2195e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2196014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2197d382aafbSBarry Smith 2198d382aafbSBarry Smith /* 2199d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2200d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2201d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2202d382aafbSBarry Smith PetscBinarySeek(). 2203d382aafbSBarry Smith */ 2204d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2205d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2206d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2207d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2208d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2209d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith /*E 2212d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2213d382aafbSBarry Smith 2214d382aafbSBarry Smith Level: advanced 2215d382aafbSBarry Smith 2216d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2217d382aafbSBarry Smith E*/ 2218d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2219014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2220014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2221014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2222d382aafbSBarry Smith 2223014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2224014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2225014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2226014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2227014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2228014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2229d382aafbSBarry Smith 2230014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2231014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2232014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2233014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2235f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2236d382aafbSBarry Smith 22376145cd65SJed Brown /*E 22386145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 22396145cd65SJed Brown 22406145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 22416145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 22426145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 22436145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 22446145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 22456145cd65SJed Brown 22466145cd65SJed Brown Level: developer 22476145cd65SJed Brown 22486145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 22496145cd65SJed Brown E*/ 22506145cd65SJed Brown typedef enum { 22516145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 22526145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 22536145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 22546145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 22556145cd65SJed Brown } PetscBuildTwoSidedType; 22566145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 22576145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 22586145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 22596145cd65SJed Brown 2260014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2261d382aafbSBarry Smith 2262d382aafbSBarry Smith /*E 2263d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2264d382aafbSBarry Smith 2265d382aafbSBarry Smith Level: beginner 2266d382aafbSBarry Smith 2267d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2268d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2269d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2270d382aafbSBarry Smith E*/ 22716fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2272d382aafbSBarry Smith 2273d382aafbSBarry Smith /*MC 2274d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2275d382aafbSBarry Smith 2276d382aafbSBarry Smith Level: beginner 2277d382aafbSBarry Smith 2278d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2279eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2280eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2281d382aafbSBarry Smith 2282d382aafbSBarry Smith M*/ 2283d382aafbSBarry Smith 2284d382aafbSBarry Smith /*MC 2285d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2286d382aafbSBarry Smith value into that location 2287d382aafbSBarry Smith 2288d382aafbSBarry Smith Level: beginner 2289d382aafbSBarry Smith 2290d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2291eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2292eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2293d382aafbSBarry Smith 2294d382aafbSBarry Smith M*/ 2295d382aafbSBarry Smith 2296d382aafbSBarry Smith /*MC 2297d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2298d382aafbSBarry Smith 2299d382aafbSBarry Smith Level: beginner 2300d382aafbSBarry Smith 2301d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2302d382aafbSBarry Smith 2303d382aafbSBarry Smith M*/ 2304d382aafbSBarry Smith 2305ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2306ce94432eSBarry Smith 230745487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 230845487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 230945487dadSJed Brown 2310d382aafbSBarry Smith /*S 2311d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2312d382aafbSBarry Smith 2313d382aafbSBarry Smith Level: advanced 2314d382aafbSBarry Smith 2315d382aafbSBarry Smith Concepts: communicator, create 2316d382aafbSBarry Smith S*/ 2317d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2318d382aafbSBarry Smith 2319d382aafbSBarry Smith struct _n_PetscSubcomm { 2320d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2321d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2322d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 232345487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 232445487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2325708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 232645487dadSJed Brown PetscSubcommType type; 2327d382aafbSBarry Smith }; 2328d382aafbSBarry Smith 2329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2331014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2332014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 233365d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2334053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2335f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2336d382aafbSBarry Smith 23370f453b92SJed Brown /*S 23380f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 23390f453b92SJed Brown 23400f453b92SJed Brown Level: developer 23410f453b92SJed Brown 23420f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 23430f453b92SJed Brown S*/ 23440f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 234513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 23460f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 234713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2348137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2349137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2350137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 235113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 235213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 23530f453b92SJed Brown 2354471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2355471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2356471ecdacSJed Brown * possible. */ 2357f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2358d382aafbSBarry Smith 2359dff31646SBarry Smith extern PetscSegBuffer PetscCitationsList; 23601f817a21SBarry Smith #undef __FUNCT__ 23611f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 23621f817a21SBarry Smith /*@C 23631f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 23641f817a21SBarry Smith 23651f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 23661f817a21SBarry Smith 23671f817a21SBarry Smith Input Parameters: 23681f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 23691f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 23701f817a21SBarry Smith 23711f817a21SBarry Smith Options Database: 23721f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 23731f817a21SBarry Smith @*/ 2374dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2375dff31646SBarry Smith { 2376dff31646SBarry Smith size_t len; 2377dff31646SBarry Smith char *vstring; 2378dff31646SBarry Smith PetscErrorCode ierr; 2379dff31646SBarry Smith 23801f817a21SBarry Smith PetscFunctionBegin; 23818d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2382dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2383dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2384dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2385dff31646SBarry Smith if (set) *set = PETSC_TRUE; 23861f817a21SBarry Smith PetscFunctionReturn(0); 2387dff31646SBarry Smith } 2388dff31646SBarry Smith 2389dff31646SBarry Smith 2390d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2391d382aafbSBarry Smith #undef __FUNCT__ 2392d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2393d382aafbSBarry Smith 2394d382aafbSBarry Smith #endif 2395