1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 1272c8e378dSBarry Smith #include <mpi.h> 12865013866SBarry Smith 129d382aafbSBarry Smith /* 130a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 131a7886beaSBarry Smith This usually happens because 132a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 133a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 134a7886beaSBarry Smith */ 135a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 136a7886beaSBarry Smith # if !defined(__MPIUNI_H) 137a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 138a7886beaSBarry Smith # endif 13941f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14041f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14141f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 14241f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 14341f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 14441f4af4cSSatish Balay # endif 14541f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 14641f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 14741f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 14841f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 14941f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15041f4af4cSSatish Balay # endif 151a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 15241f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 153a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 154ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 155a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 156a7886beaSBarry Smith # endif 157a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 158a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 159a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 160ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 161c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 162a7886beaSBarry Smith # endif 16341f4af4cSSatish Balay #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 16441f4af4cSSatish Balay # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 165a7886beaSBarry Smith #endif 166a7886beaSBarry Smith 167a7886beaSBarry Smith /* 1682981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 169d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 170d382aafbSBarry Smith */ 171d382aafbSBarry Smith #include <stdio.h> 172d382aafbSBarry Smith 173d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 174d382aafbSBarry Smith #if !defined(MPIAPI) 175d382aafbSBarry Smith #define MPIAPI 176d382aafbSBarry Smith #endif 177d382aafbSBarry Smith 1781cc8b206SBarry Smith /* 1791cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1801cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1811cc8b206SBarry Smith does not match the actual type of the argument being passed in 1821cc8b206SBarry Smith */ 183c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 184894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 185894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1868ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1878ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 188894dd566SJed Brown # endif 189894dd566SJed Brown #endif 190894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 191894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1928ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1938ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 194894dd566SJed Brown #endif 195b3506946SBarry Smith 196d382aafbSBarry Smith /*MC 1971957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 198d382aafbSBarry Smith 199d382aafbSBarry Smith Level: beginner 200d382aafbSBarry Smith 201d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 202d382aafbSBarry Smith M*/ 203d382aafbSBarry Smith typedef int PetscErrorCode; 204d382aafbSBarry Smith 205d382aafbSBarry Smith /*MC 206d382aafbSBarry Smith 207503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 208d382aafbSBarry Smith 209e28ce29aSPatrick Sanan Notes: 210e28ce29aSPatrick Sanan Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 2111957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2121957e957SBarry Smith 213e28ce29aSPatrick Sanan Developer Notes: 214e28ce29aSPatrick Sanan Internal integer stored in the _p_PetscObject data structure. 2151957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2161957e957SBarry Smith 2171957e957SBarry Smith Level: developer 218d382aafbSBarry Smith 2190700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 220d382aafbSBarry Smith M*/ 2210700a824SBarry Smith typedef int PetscClassId; 222d382aafbSBarry Smith 223d382aafbSBarry Smith 224d382aafbSBarry Smith /*MC 225d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 226d382aafbSBarry Smith 227d382aafbSBarry Smith Level: intermediate 228d382aafbSBarry Smith 229e28ce29aSPatrick Sanan Notes: 230e28ce29aSPatrick Sanan usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 231e28ce29aSPatrick Sanan standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt; it remains 32 bit. 232d382aafbSBarry Smith 2334dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2342981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 235d382aafbSBarry Smith 2361cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 237d382aafbSBarry Smith 238d382aafbSBarry Smith M*/ 239d382aafbSBarry Smith typedef int PetscMPIInt; 240d382aafbSBarry Smith 241d382aafbSBarry Smith /*MC 242d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 243d382aafbSBarry Smith 244d382aafbSBarry Smith Level: intermediate 245d382aafbSBarry Smith 246d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 247d382aafbSBarry Smith M*/ 248d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2495a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 250d382aafbSBarry Smith 251fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 252fab38c73SJed Brown #include <stdint.h> 253fab38c73SJed Brown #endif 254a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 25513e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 256a05e1a72SSatish Balay #include <inttypes.h> 25737354ed4SSatish Balay # if !defined(PRId64) 25837354ed4SSatish Balay # define PRId64 "ld" 25937354ed4SSatish Balay # endif 260a05e1a72SSatish Balay #endif 261fab38c73SJed Brown 26299a4b90dSDave May typedef short PetscShort; 26399a4b90dSDave May typedef char PetscChar; 26499a4b90dSDave May typedef float PetscFloat; 26599a4b90dSDave May 266d382aafbSBarry Smith /*MC 267bb42e86aSJed Brown PetscInt - PETSc type that represents an integer, used primarily to 268e28ce29aSPatrick Sanan represent size of arrays and indexing into arrays. Its size can be configured with the option --with-64-bit-indices to be either 32-bit (default) or 64-bit. 269d382aafbSBarry Smith 270e28ce29aSPatrick Sanan Notes: 271e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of the size of PetscInt. 272390e1bf2SBarry Smith 273e28ce29aSPatrick Sanan Level: beginner 274390e1bf2SBarry Smith 275e28ce29aSPatrick Sanan .seealso: PetscBLASInt, PetscMPIInt, PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 276d382aafbSBarry Smith M*/ 277e28ce29aSPatrick Sanan 278e28ce29aSPatrick Sanan /*MC 279e28ce29aSPatrick Sanan MPIU_INT - MPI datatype corresponding to PetscInt 280e28ce29aSPatrick Sanan 281e28ce29aSPatrick Sanan Notes: 282e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscInt or array of PetscInt values, pass this value. 283e28ce29aSPatrick Sanan 284e28ce29aSPatrick Sanan Level: beginner 285e28ce29aSPatrick Sanan 286e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX 287e28ce29aSPatrick Sanan M*/ 288e28ce29aSPatrick Sanan 28937354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 290bafee8b4SSatish Balay typedef int64_t PetscInt64; 291bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 292a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 293fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 294bafee8b4SSatish Balay typedef long long PetscInt64; 295bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 296a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 297f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 298bafee8b4SSatish Balay typedef __int64 PetscInt64; 299bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 300a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 301236ed0a3SSatish Balay #else 302bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 303236ed0a3SSatish Balay #endif 304b7b8f77aSBarry Smith 305b7b8f77aSBarry Smith #if PETSC_SIZEOF_VOID_P == 4 306b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPI_INT 307b7b8f77aSBarry Smith #else 308b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPIU_INT64 309b7b8f77aSBarry Smith #endif 310b7b8f77aSBarry Smith 311d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 312bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 313bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 314a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 315d382aafbSBarry Smith #else 316d382aafbSBarry Smith typedef int PetscInt; 317d382aafbSBarry Smith #define MPIU_INT MPI_INT 318a05e1a72SSatish Balay #define PetscInt_FMT "d" 319d382aafbSBarry Smith #endif 320d382aafbSBarry Smith 321702bc34aSSatish Balay /*MC 322702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 323702bc34aSSatish Balay 324e28ce29aSPatrick Sanan Notes: 325e28ce29aSPatrick Sanan Usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 326702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 327702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 328702bc34aSSatish Balay 329c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3302981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 331702bc34aSSatish Balay 332e28ce29aSPatrick Sanan Installation Notes: 333e28ce29aSPatrick Sanan The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 334702bc34aSSatish Balay if you run ./configure with the option 335149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3362981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3372981ebdbSBarry Smith 338390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 339390e1bf2SBarry Smith --known-64-bit-blas-indices 340390e1bf2SBarry Smith 341390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 342390e1bf2SBarry Smith will build a 64 bit integer version 3432981ebdbSBarry Smith 344e28ce29aSPatrick Sanan Developer Notes: 345e28ce29aSPatrick Sanan Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 346702bc34aSSatish Balay 347702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 348702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 349702bc34aSSatish Balay 350e28ce29aSPatrick Sanan Level: intermediate 351e28ce29aSPatrick Sanan 3521cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 353702bc34aSSatish Balay 354702bc34aSSatish Balay M*/ 355702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 356bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 357702bc34aSSatish Balay #else 358702bc34aSSatish Balay typedef int PetscBLASInt; 359702bc34aSSatish Balay #endif 360702bc34aSSatish Balay 361503cfb0cSBarry Smith /* 362503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 363503cfb0cSBarry Smith */ 364d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 365adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 366d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 367adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 368d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 369adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 370d382aafbSBarry Smith #else 371d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 372d382aafbSBarry Smith #endif 373d382aafbSBarry Smith 374d382aafbSBarry Smith /* 375d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 376d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 377d382aafbSBarry Smith */ 378014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 379d382aafbSBarry Smith 380d382aafbSBarry Smith /* 381d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 382d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 383d382aafbSBarry Smith */ 384014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 385d382aafbSBarry Smith 386d382aafbSBarry Smith /*MC 387d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 388d382aafbSBarry Smith 389d382aafbSBarry Smith Synopsis: 390aaa7dc30SBarry Smith #include <petscsys.h> 391ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 392d382aafbSBarry Smith 393eca87e8dSBarry Smith Not Collective 394eca87e8dSBarry Smith 395d382aafbSBarry Smith Input Parameters: 396d382aafbSBarry Smith . cond - condition or expression 397d382aafbSBarry Smith 398e28ce29aSPatrick Sanan Notes: 399e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 400d382aafbSBarry Smith branch is unlikely. 401d382aafbSBarry Smith 402d382aafbSBarry Smith Level: advanced 403d382aafbSBarry Smith 404d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 405d382aafbSBarry Smith M*/ 406d382aafbSBarry Smith 407d382aafbSBarry Smith /*MC 408d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 409d382aafbSBarry Smith 410d382aafbSBarry Smith Synopsis: 411aaa7dc30SBarry Smith #include <petscsys.h> 41223072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 413d382aafbSBarry Smith 414eca87e8dSBarry Smith Not Collective 415eca87e8dSBarry Smith 416d382aafbSBarry Smith Input Parameters: 417d382aafbSBarry Smith . cond - condition or expression 418d382aafbSBarry Smith 419e28ce29aSPatrick Sanan Notes: 420e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 421d382aafbSBarry Smith branch is likely. 422d382aafbSBarry Smith 423d382aafbSBarry Smith Level: advanced 424d382aafbSBarry Smith 425d382aafbSBarry Smith .seealso: PetscUnlikely() 426d382aafbSBarry Smith M*/ 427d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 428d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 429d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 430d382aafbSBarry Smith #else 431cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 432cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 433d382aafbSBarry Smith #endif 434d382aafbSBarry Smith 435d382aafbSBarry Smith /* 436d382aafbSBarry Smith Declare extern C stuff after including external header files 437d382aafbSBarry Smith */ 438d382aafbSBarry Smith 439d382aafbSBarry Smith 440d382aafbSBarry Smith /* 441d382aafbSBarry Smith Basic PETSc constants 442d382aafbSBarry Smith */ 443d382aafbSBarry Smith 444d382aafbSBarry Smith /*E 445ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 446d382aafbSBarry Smith 447d382aafbSBarry Smith Level: beginner 448d382aafbSBarry Smith 449e28ce29aSPatrick Sanan Developer Note: 450e28ce29aSPatrick Sanan Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 45134e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 45234e82e7dSBarry Smith 4531cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 454d382aafbSBarry Smith E*/ 455ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4566a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4575a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 45870b3c8c7SBarry Smith 4598b49ba18SBarry Smith /* 460390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4618b49ba18SBarry Smith */ 4628b49ba18SBarry Smith #include <petscmath.h> 4638b49ba18SBarry Smith 46470b3c8c7SBarry Smith /*E 46570b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 46670b3c8c7SBarry Smith 46770b3c8c7SBarry Smith Level: beginner 46870b3c8c7SBarry Smith 46970b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 47070b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 47170b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 47270b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 47370b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 47470b3c8c7SBarry Smith 47570b3c8c7SBarry Smith E*/ 47670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4776a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 478d382aafbSBarry Smith 479d382aafbSBarry Smith /*MC 480ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 481d382aafbSBarry Smith 482d382aafbSBarry Smith Level: beginner 483d382aafbSBarry Smith 484e28ce29aSPatrick Sanan Note: 485e28ce29aSPatrick Sanan Zero integer 486d382aafbSBarry Smith 487ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 488d382aafbSBarry Smith M*/ 489d382aafbSBarry Smith 490d382aafbSBarry Smith /*MC 491ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 492d382aafbSBarry Smith 493d382aafbSBarry Smith Level: beginner 494d382aafbSBarry Smith 495e28ce29aSPatrick Sanan Note: 496e28ce29aSPatrick Sanan Nonzero integer 497d382aafbSBarry Smith 498ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 499d382aafbSBarry Smith M*/ 500d382aafbSBarry Smith 501d382aafbSBarry Smith /*MC 5020298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 503d382aafbSBarry Smith 504d382aafbSBarry Smith Level: beginner 505d382aafbSBarry Smith 506e28ce29aSPatrick Sanan Note: 507e28ce29aSPatrick Sanan Accepted by many PETSc functions to not set a parameter and instead use 508d382aafbSBarry Smith some default 509d382aafbSBarry Smith 510e28ce29aSPatrick Sanan Fortran Notes: 511e28ce29aSPatrick Sanan This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 512d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 513d382aafbSBarry Smith 514e28ce29aSPatrick Sanan .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_DETERMINE 515d382aafbSBarry Smith 516d382aafbSBarry Smith M*/ 5170298fd71SBarry Smith #define PETSC_IGNORE NULL 518d382aafbSBarry Smith 519c528d872SBarry Smith /* This is deprecated */ 520c528d872SBarry Smith #define PETSC_NULL NULL 521c528d872SBarry Smith 522d382aafbSBarry Smith /*MC 523557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 524557d4da8SBarry Smith where you wish PETSc to use the default. 525557d4da8SBarry Smith 526557d4da8SBarry Smith Level: beginner 527557d4da8SBarry Smith 528e28ce29aSPatrick Sanan .seealso: PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 529557d4da8SBarry Smith 530557d4da8SBarry Smith M*/ 531557d4da8SBarry Smith #define PETSC_DECIDE -1 532557d4da8SBarry Smith 533557d4da8SBarry Smith /*MC 534d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 535d382aafbSBarry Smith where you wish PETSc to compute the required value. 536d382aafbSBarry Smith 537d382aafbSBarry Smith Level: beginner 538d382aafbSBarry Smith 539e28ce29aSPatrick Sanan Developer Note: 540e28ce29aSPatrick Sanan I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 541557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 542557d4da8SBarry Smith 5430298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 544d382aafbSBarry Smith 545d382aafbSBarry Smith M*/ 546d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 547d382aafbSBarry Smith 548d382aafbSBarry Smith /*MC 549557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 550557d4da8SBarry Smith where you wish PETSc to use the default. 551557d4da8SBarry Smith 552557d4da8SBarry Smith Level: beginner 553557d4da8SBarry Smith 554e28ce29aSPatrick Sanan Fortran Notes: 555e28ce29aSPatrick Sanan You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 556557d4da8SBarry Smith 5570298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 558557d4da8SBarry Smith 559557d4da8SBarry Smith M*/ 560557d4da8SBarry Smith #define PETSC_DEFAULT -2 561557d4da8SBarry Smith 562557d4da8SBarry Smith /*MC 563d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 564d382aafbSBarry Smith all the processs that PETSc knows about. 565d382aafbSBarry Smith 566d382aafbSBarry Smith Level: beginner 567d382aafbSBarry Smith 568e28ce29aSPatrick Sanan Notes: 569e28ce29aSPatrick Sanan By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 570d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 571d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 572a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 573a990b902SBarry Smith 574a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 575a990b902SBarry Smith is called because it may not have a valid value yet. 576d382aafbSBarry Smith 577d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 578d382aafbSBarry Smith 579d382aafbSBarry Smith M*/ 580014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 581d382aafbSBarry Smith 582d382aafbSBarry Smith /*MC 583503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 584d382aafbSBarry Smith 585d382aafbSBarry Smith Level: beginner 586d382aafbSBarry Smith 587e28ce29aSPatrick Sanan Notes: 588e28ce29aSPatrick Sanan Do not USE/access or set this variable before PetscInitialize() has been called. 589a990b902SBarry Smith 590d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 591d382aafbSBarry Smith 592d382aafbSBarry Smith M*/ 593d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 594d382aafbSBarry Smith 595d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 596014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 597014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 5984cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 59982f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 600d382aafbSBarry Smith 601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 604d382aafbSBarry Smith 605d382aafbSBarry Smith /*MC 60695dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 607d382aafbSBarry Smith 608eca87e8dSBarry Smith Synopsis: 609aaa7dc30SBarry Smith #include <petscsys.h> 610eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 611eca87e8dSBarry Smith 612eca87e8dSBarry Smith Not Collective 613eca87e8dSBarry Smith 614d382aafbSBarry Smith Input Parameter: 615d382aafbSBarry Smith . m - number of bytes to allocate 616d382aafbSBarry Smith 617d382aafbSBarry Smith Output Parameter: 618d382aafbSBarry Smith . result - memory allocated 619d382aafbSBarry Smith 620d382aafbSBarry Smith Level: beginner 621d382aafbSBarry Smith 62249d7da52SJed Brown Notes: 62349d7da52SJed Brown Memory is always allocated at least double aligned 624d382aafbSBarry Smith 62549d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 626d382aafbSBarry Smith 627d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 628d382aafbSBarry Smith 629d382aafbSBarry Smith Concepts: memory allocation 630d382aafbSBarry Smith 631d382aafbSBarry Smith M*/ 63249d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 633d382aafbSBarry Smith 634d382aafbSBarry Smith /*MC 6353221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6363221ece2SMatthew G. Knepley 6373221ece2SMatthew G. Knepley Synopsis: 6383221ece2SMatthew G. Knepley #include <petscsys.h> 6393221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6403221ece2SMatthew G. Knepley 6413221ece2SMatthew G. Knepley Not Collective 6423221ece2SMatthew G. Knepley 6433221ece2SMatthew G. Knepley Input Parameters: 6443221ece2SMatthew G. Knepley + m - number of bytes to allocate 6453221ece2SMatthew G. Knepley - result - initial memory allocated 6463221ece2SMatthew G. Knepley 6473221ece2SMatthew G. Knepley Output Parameter: 6483221ece2SMatthew G. Knepley . result - new memory allocated 6493221ece2SMatthew G. Knepley 6503221ece2SMatthew G. Knepley Level: developer 6513221ece2SMatthew G. Knepley 6523221ece2SMatthew G. Knepley Notes: 6533221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6543221ece2SMatthew G. Knepley 6553221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6563221ece2SMatthew G. Knepley 6573221ece2SMatthew G. Knepley Concepts: memory allocation 6583221ece2SMatthew G. Knepley 6593221ece2SMatthew G. Knepley M*/ 6603221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6613221ece2SMatthew G. Knepley 6623221ece2SMatthew G. Knepley /*MC 663503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 664d382aafbSBarry Smith 665d382aafbSBarry Smith Synopsis: 666aaa7dc30SBarry Smith #include <petscsys.h> 667d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 668d382aafbSBarry Smith 669eca87e8dSBarry Smith Not Collective 670eca87e8dSBarry Smith 671eca87e8dSBarry Smith Input Parameters: 672eca87e8dSBarry Smith . addr - address to align (any pointer type) 673eca87e8dSBarry Smith 674d382aafbSBarry Smith Level: developer 675d382aafbSBarry Smith 676d382aafbSBarry Smith .seealso: PetscMallocAlign() 677d382aafbSBarry Smith 678d382aafbSBarry Smith Concepts: memory allocation 679d382aafbSBarry Smith M*/ 680d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 681d382aafbSBarry Smith 682d382aafbSBarry Smith /*MC 683785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 684d382aafbSBarry Smith 685eca87e8dSBarry Smith Synopsis: 686aaa7dc30SBarry Smith #include <petscsys.h> 687785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 688785e854fSJed Brown 689785e854fSJed Brown Not Collective 690785e854fSJed Brown 691785e854fSJed Brown Input Parameter: 692390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 693785e854fSJed Brown 694785e854fSJed Brown Output Parameter: 695785e854fSJed Brown . r1 - memory allocated in first chunk 696785e854fSJed Brown 697e28ce29aSPatrick Sanan Note: 698e28ce29aSPatrick Sanan This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 699390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 700390e1bf2SBarry Smith $ PetscInt *id; 701390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 702390e1bf2SBarry Smith not 703390e1bf2SBarry Smith $ PetscInt *id; 704390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 705390e1bf2SBarry Smith 706390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 707390e1bf2SBarry Smith 708390e1bf2SBarry Smith Level: beginner 709785e854fSJed Brown 7101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 711785e854fSJed Brown 712785e854fSJed Brown Concepts: memory allocation 713785e854fSJed Brown 714785e854fSJed Brown M*/ 7152553b7ecSJed Brown #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 716785e854fSJed Brown 717785e854fSJed Brown /*MC 7181795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 7191795a4d1SJed Brown 7201795a4d1SJed Brown Synopsis: 721aaa7dc30SBarry Smith #include <petscsys.h> 7221795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 7231795a4d1SJed Brown 7241795a4d1SJed Brown Not Collective 7251795a4d1SJed Brown 7261795a4d1SJed Brown Input Parameter: 7271795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 7281795a4d1SJed Brown 7291795a4d1SJed Brown Output Parameter: 7301795a4d1SJed Brown . r1 - memory allocated in first chunk 7311795a4d1SJed Brown 732e28ce29aSPatrick Sanan Notes: 733e28ce29aSPatrick Sanan See PetsMalloc1() for more details on usage. 734390e1bf2SBarry Smith 735390e1bf2SBarry Smith Level: beginner 7361795a4d1SJed Brown 7371795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 7381795a4d1SJed Brown 7391795a4d1SJed Brown Concepts: memory allocation 7401795a4d1SJed Brown 7411795a4d1SJed Brown M*/ 7422553b7ecSJed Brown #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 7431795a4d1SJed Brown 7441795a4d1SJed Brown /*MC 745dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 746d382aafbSBarry Smith 747eca87e8dSBarry Smith Synopsis: 748aaa7dc30SBarry Smith #include <petscsys.h> 749dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 750eca87e8dSBarry Smith 751eca87e8dSBarry Smith Not Collective 752eca87e8dSBarry Smith 753d382aafbSBarry Smith Input Parameter: 754d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 755dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 756d382aafbSBarry Smith 757d382aafbSBarry Smith Output Parameter: 758d382aafbSBarry Smith + r1 - memory allocated in first chunk 759d382aafbSBarry Smith - r2 - memory allocated in second chunk 760d382aafbSBarry Smith 761d382aafbSBarry Smith Level: developer 762d382aafbSBarry Smith 7631795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 764d382aafbSBarry Smith 765d382aafbSBarry Smith Concepts: memory allocation 766d382aafbSBarry Smith 767d382aafbSBarry Smith M*/ 7682553b7ecSJed Brown #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 769d382aafbSBarry Smith 770d382aafbSBarry Smith /*MC 7711795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 772d382aafbSBarry Smith 773eca87e8dSBarry Smith Synopsis: 774aaa7dc30SBarry Smith #include <petscsys.h> 7751795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 776eca87e8dSBarry Smith 777eca87e8dSBarry Smith Not Collective 778eca87e8dSBarry Smith 779d382aafbSBarry Smith Input Parameter: 780d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7811795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7821795a4d1SJed Brown 7831795a4d1SJed Brown Output Parameter: 7841795a4d1SJed Brown + r1 - memory allocated in first chunk 7851795a4d1SJed Brown - r2 - memory allocated in second chunk 7861795a4d1SJed Brown 7871795a4d1SJed Brown Level: developer 7881795a4d1SJed Brown 7891795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7901795a4d1SJed Brown 7911795a4d1SJed Brown Concepts: memory allocation 7921795a4d1SJed Brown M*/ 7932553b7ecSJed Brown #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 7941795a4d1SJed Brown 7951795a4d1SJed Brown /*MC 796dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 797d382aafbSBarry Smith 798d382aafbSBarry Smith Synopsis: 799aaa7dc30SBarry Smith #include <petscsys.h> 800dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 801d382aafbSBarry Smith 802d382aafbSBarry Smith Not Collective 803d382aafbSBarry Smith 804d382aafbSBarry Smith Input Parameter: 805d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 806d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 807dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 808d382aafbSBarry Smith 809d382aafbSBarry Smith Output Parameter: 810d382aafbSBarry Smith + r1 - memory allocated in first chunk 811d382aafbSBarry Smith . r2 - memory allocated in second chunk 812d382aafbSBarry Smith - r3 - memory allocated in third chunk 813d382aafbSBarry Smith 814d382aafbSBarry Smith Level: developer 815d382aafbSBarry Smith 8161795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 817d382aafbSBarry Smith 818d382aafbSBarry Smith Concepts: memory allocation 819d382aafbSBarry Smith 820d382aafbSBarry Smith M*/ 8212553b7ecSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 822d382aafbSBarry Smith 823d382aafbSBarry Smith /*MC 8241795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 825d382aafbSBarry Smith 826eca87e8dSBarry Smith Synopsis: 827aaa7dc30SBarry Smith #include <petscsys.h> 8281795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 829eca87e8dSBarry Smith 830eca87e8dSBarry Smith Not Collective 831eca87e8dSBarry Smith 832d382aafbSBarry Smith Input Parameter: 833d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 834d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8351795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8361795a4d1SJed Brown 8371795a4d1SJed Brown Output Parameter: 8381795a4d1SJed Brown + r1 - memory allocated in first chunk 8391795a4d1SJed Brown . r2 - memory allocated in second chunk 8401795a4d1SJed Brown - r3 - memory allocated in third chunk 8411795a4d1SJed Brown 8421795a4d1SJed Brown Level: developer 8431795a4d1SJed Brown 8441795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8451795a4d1SJed Brown 8461795a4d1SJed Brown Concepts: memory allocation 8471795a4d1SJed Brown M*/ 8482553b7ecSJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 8491795a4d1SJed Brown 8501795a4d1SJed Brown /*MC 851dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 852d382aafbSBarry Smith 853d382aafbSBarry Smith Synopsis: 854aaa7dc30SBarry Smith #include <petscsys.h> 855dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 856d382aafbSBarry Smith 857d382aafbSBarry Smith Not Collective 858d382aafbSBarry Smith 859d382aafbSBarry Smith Input Parameter: 860d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 861d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 862d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 863dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 864d382aafbSBarry Smith 865d382aafbSBarry Smith Output Parameter: 866d382aafbSBarry Smith + r1 - memory allocated in first chunk 867d382aafbSBarry Smith . r2 - memory allocated in second chunk 868d382aafbSBarry Smith . r3 - memory allocated in third chunk 869d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 870d382aafbSBarry Smith 871d382aafbSBarry Smith Level: developer 872d382aafbSBarry Smith 8731795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 874d382aafbSBarry Smith 875d382aafbSBarry Smith Concepts: memory allocation 876d382aafbSBarry Smith 877d382aafbSBarry Smith M*/ 8782553b7ecSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 879d382aafbSBarry Smith 880d382aafbSBarry Smith /*MC 8811795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 882d382aafbSBarry Smith 883eca87e8dSBarry Smith Synopsis: 884aaa7dc30SBarry Smith #include <petscsys.h> 8851795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 886eca87e8dSBarry Smith 887eca87e8dSBarry Smith Not Collective 888eca87e8dSBarry Smith 889e28ce29aSPatrick Sanan Input Parameters: 890d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 891d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 892d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8931795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8941795a4d1SJed Brown 895e28ce29aSPatrick Sanan Output Parameters: 8961795a4d1SJed Brown + r1 - memory allocated in first chunk 8971795a4d1SJed Brown . r2 - memory allocated in second chunk 8981795a4d1SJed Brown . r3 - memory allocated in third chunk 8991795a4d1SJed Brown - r4 - memory allocated in fourth chunk 9001795a4d1SJed Brown 9011795a4d1SJed Brown Level: developer 9021795a4d1SJed Brown 9031795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 9041795a4d1SJed Brown 9051795a4d1SJed Brown Concepts: memory allocation 9061795a4d1SJed Brown 9071795a4d1SJed Brown M*/ 9082553b7ecSJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 9091795a4d1SJed Brown 9101795a4d1SJed Brown /*MC 911dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 912d382aafbSBarry Smith 913d382aafbSBarry Smith Synopsis: 914aaa7dc30SBarry Smith #include <petscsys.h> 915dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 916d382aafbSBarry Smith 917d382aafbSBarry Smith Not Collective 918d382aafbSBarry Smith 919e28ce29aSPatrick Sanan Input Parameters: 920d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 921d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 922d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 923d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 924dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 925d382aafbSBarry Smith 926e28ce29aSPatrick Sanan Output Parameters: 927d382aafbSBarry Smith + r1 - memory allocated in first chunk 928d382aafbSBarry Smith . r2 - memory allocated in second chunk 929d382aafbSBarry Smith . r3 - memory allocated in third chunk 930d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 931d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 932d382aafbSBarry Smith 933d382aafbSBarry Smith Level: developer 934d382aafbSBarry Smith 9351795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 936d382aafbSBarry Smith 937d382aafbSBarry Smith Concepts: memory allocation 938d382aafbSBarry Smith 939d382aafbSBarry Smith M*/ 9402553b7ecSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 941d382aafbSBarry Smith 942d382aafbSBarry Smith /*MC 9431795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 944d382aafbSBarry Smith 945eca87e8dSBarry Smith Synopsis: 946aaa7dc30SBarry Smith #include <petscsys.h> 9471795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 948eca87e8dSBarry Smith 949eca87e8dSBarry Smith Not Collective 950eca87e8dSBarry Smith 951e28ce29aSPatrick Sanan Input Parameters: 952d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 953d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 954d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 955d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9561795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9571795a4d1SJed Brown 958e28ce29aSPatrick Sanan Output Parameters: 9591795a4d1SJed Brown + r1 - memory allocated in first chunk 9601795a4d1SJed Brown . r2 - memory allocated in second chunk 9611795a4d1SJed Brown . r3 - memory allocated in third chunk 9621795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9631795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9641795a4d1SJed Brown 9651795a4d1SJed Brown Level: developer 9661795a4d1SJed Brown 9671795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9681795a4d1SJed Brown 9691795a4d1SJed Brown Concepts: memory allocation 9701795a4d1SJed Brown 9711795a4d1SJed Brown M*/ 9722553b7ecSJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 973d382aafbSBarry Smith 974d382aafbSBarry Smith /*MC 975dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 976d382aafbSBarry Smith 977d382aafbSBarry Smith Synopsis: 978aaa7dc30SBarry Smith #include <petscsys.h> 979dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 980d382aafbSBarry Smith 981d382aafbSBarry Smith Not Collective 982d382aafbSBarry Smith 983e28ce29aSPatrick Sanan Input Parameters: 984d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 985d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 986d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 987d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 988d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 989dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 990d382aafbSBarry Smith 991e28ce29aSPatrick Sanan Output Parameteasr: 992d382aafbSBarry Smith + r1 - memory allocated in first chunk 993d382aafbSBarry Smith . r2 - memory allocated in second chunk 994d382aafbSBarry Smith . r3 - memory allocated in third chunk 995d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 996d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 997d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 998d382aafbSBarry Smith 999d382aafbSBarry Smith Level: developer 1000d382aafbSBarry Smith 10011795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith Concepts: memory allocation 1004d382aafbSBarry Smith 1005d382aafbSBarry Smith M*/ 10062553b7ecSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith /*MC 10091795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1010d382aafbSBarry Smith 1011eca87e8dSBarry Smith Synopsis: 1012aaa7dc30SBarry Smith #include <petscsys.h> 10131795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1014eca87e8dSBarry Smith 1015eca87e8dSBarry Smith Not Collective 1016eca87e8dSBarry Smith 1017e28ce29aSPatrick Sanan Input Parameters: 1018d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1019d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1020d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1021d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1022d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10231795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10241795a4d1SJed Brown 1025e28ce29aSPatrick Sanan Output Parameters: 10261795a4d1SJed Brown + r1 - memory allocated in first chunk 10271795a4d1SJed Brown . r2 - memory allocated in second chunk 10281795a4d1SJed Brown . r3 - memory allocated in third chunk 10291795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10301795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10311795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10321795a4d1SJed Brown 10331795a4d1SJed Brown Level: developer 10341795a4d1SJed Brown 10351795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10361795a4d1SJed Brown 10371795a4d1SJed Brown Concepts: memory allocation 10381795a4d1SJed Brown M*/ 10392553b7ecSJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 10401795a4d1SJed Brown 10411795a4d1SJed Brown /*MC 1042dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1043d382aafbSBarry Smith 1044d382aafbSBarry Smith Synopsis: 1045aaa7dc30SBarry Smith #include <petscsys.h> 1046dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith Not Collective 1049d382aafbSBarry Smith 1050e28ce29aSPatrick Sanan Input Parameters: 1051d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1052d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1053d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1054d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1055d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1056d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1057dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1058d382aafbSBarry Smith 1059e28ce29aSPatrick Sanan Output Parameters: 1060d382aafbSBarry Smith + r1 - memory allocated in first chunk 1061d382aafbSBarry Smith . r2 - memory allocated in second chunk 1062d382aafbSBarry Smith . r3 - memory allocated in third chunk 1063d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1064d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1065d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1066eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1067d382aafbSBarry Smith 1068d382aafbSBarry Smith Level: developer 1069d382aafbSBarry Smith 10701795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith Concepts: memory allocation 1073d382aafbSBarry Smith 1074d382aafbSBarry Smith M*/ 10752553b7ecSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 1076d382aafbSBarry Smith 1077d382aafbSBarry Smith /*MC 10781795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10791795a4d1SJed Brown 10801795a4d1SJed Brown Synopsis: 1081aaa7dc30SBarry Smith #include <petscsys.h> 10821795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10831795a4d1SJed Brown 10841795a4d1SJed Brown Not Collective 10851795a4d1SJed Brown 1086e28ce29aSPatrick Sanan Input Parameters: 10871795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10881795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10891795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10901795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10911795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10921795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10931795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10941795a4d1SJed Brown 1095e28ce29aSPatrick Sanan Output Parameters: 10961795a4d1SJed Brown + r1 - memory allocated in first chunk 10971795a4d1SJed Brown . r2 - memory allocated in second chunk 10981795a4d1SJed Brown . r3 - memory allocated in third chunk 10991795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11001795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11011795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11021795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11031795a4d1SJed Brown 11041795a4d1SJed Brown Level: developer 11051795a4d1SJed Brown 11061795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11071795a4d1SJed Brown 11081795a4d1SJed Brown Concepts: memory allocation 11091795a4d1SJed Brown M*/ 11102553b7ecSJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 11111795a4d1SJed Brown 11121795a4d1SJed Brown /*MC 1113503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1114d382aafbSBarry Smith 1115eca87e8dSBarry Smith Synopsis: 1116aaa7dc30SBarry Smith #include <petscsys.h> 1117b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1118eca87e8dSBarry Smith 1119eca87e8dSBarry Smith Not Collective 1120eca87e8dSBarry Smith 1121d382aafbSBarry Smith Output Parameter: 1122b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1123d382aafbSBarry Smith 1124d382aafbSBarry Smith Level: beginner 1125d382aafbSBarry Smith 1126390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith Concepts: memory allocation 1129d382aafbSBarry Smith 1130d382aafbSBarry Smith M*/ 1131b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1132ad0619ddSBarry Smith 1133ad0619ddSBarry Smith /*MC 1134b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1135ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1136ad0619ddSBarry Smith 1137ad0619ddSBarry Smith Synopsis: 1138aaa7dc30SBarry Smith #include <petscsys.h> 1139b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1140ad0619ddSBarry Smith 1141ad0619ddSBarry Smith Not Collective 1142ad0619ddSBarry Smith 1143ad0619ddSBarry Smith Input Parameter: 1144b00a9115SJed Brown . obj - object memory is logged to 1145ad0619ddSBarry Smith 1146ad0619ddSBarry Smith Output Parameter: 1147b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1148ad0619ddSBarry Smith 1149ad0619ddSBarry Smith Level: developer 1150ad0619ddSBarry Smith 1151390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1152ad0619ddSBarry Smith 1153ad0619ddSBarry Smith Concepts: memory allocation 1154ad0619ddSBarry Smith 1155ad0619ddSBarry Smith M*/ 1156d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1157d382aafbSBarry Smith 1158d382aafbSBarry Smith /*MC 1159d382aafbSBarry Smith PetscFree - Frees memory 1160d382aafbSBarry Smith 1161eca87e8dSBarry Smith Synopsis: 1162aaa7dc30SBarry Smith #include <petscsys.h> 1163eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1164eca87e8dSBarry Smith 1165eca87e8dSBarry Smith Not Collective 1166eca87e8dSBarry Smith 1167d382aafbSBarry Smith Input Parameter: 1168390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1169d382aafbSBarry Smith 1170d382aafbSBarry Smith Level: beginner 1171d382aafbSBarry Smith 117249d7da52SJed Brown Notes: 1173390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1174390e1bf2SBarry Smith 117549d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1176d382aafbSBarry Smith 1177390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1178d382aafbSBarry Smith 1179d382aafbSBarry Smith Concepts: memory allocation 1180d382aafbSBarry Smith 1181d382aafbSBarry Smith M*/ 118249d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1183d382aafbSBarry Smith 1184d382aafbSBarry Smith /*MC 1185d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1186d382aafbSBarry Smith 1187eca87e8dSBarry Smith Synopsis: 1188aaa7dc30SBarry Smith #include <petscsys.h> 1189eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1190eca87e8dSBarry Smith 1191eca87e8dSBarry Smith Not Collective 1192eca87e8dSBarry Smith 1193e28ce29aSPatrick Sanan Input Parameters: 1194d382aafbSBarry Smith + memory1 - memory to free 1195d382aafbSBarry Smith - memory2 - 2nd memory to free 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith Level: developer 1198d382aafbSBarry Smith 1199*95452b02SPatrick Sanan Notes: 1200*95452b02SPatrick Sanan Memory must have been obtained with PetscMalloc2() 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith Concepts: memory allocation 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith M*/ 1207ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith /*MC 1210d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1211d382aafbSBarry Smith 1212eca87e8dSBarry Smith Synopsis: 1213aaa7dc30SBarry Smith #include <petscsys.h> 1214eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1215eca87e8dSBarry Smith 1216eca87e8dSBarry Smith Not Collective 1217eca87e8dSBarry Smith 1218e28ce29aSPatrick Sanan Input Parameters: 1219d382aafbSBarry Smith + memory1 - memory to free 1220d382aafbSBarry Smith . memory2 - 2nd memory to free 1221d382aafbSBarry Smith - memory3 - 3rd memory to free 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Level: developer 1224d382aafbSBarry Smith 1225*95452b02SPatrick Sanan Notes: 1226*95452b02SPatrick Sanan Memory must have been obtained with PetscMalloc3() 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith Concepts: memory allocation 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith M*/ 1233ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1234d382aafbSBarry Smith 1235d382aafbSBarry Smith /*MC 1236d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1237d382aafbSBarry Smith 1238eca87e8dSBarry Smith Synopsis: 1239aaa7dc30SBarry Smith #include <petscsys.h> 1240eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1241eca87e8dSBarry Smith 1242eca87e8dSBarry Smith Not Collective 1243eca87e8dSBarry Smith 1244e28ce29aSPatrick Sanan Input Parameters: 1245d382aafbSBarry Smith + m1 - memory to free 1246d382aafbSBarry Smith . m2 - 2nd memory to free 1247d382aafbSBarry Smith . m3 - 3rd memory to free 1248d382aafbSBarry Smith - m4 - 4th memory to free 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith Level: developer 1251d382aafbSBarry Smith 1252*95452b02SPatrick Sanan Notes: 1253*95452b02SPatrick Sanan Memory must have been obtained with PetscMalloc4() 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith Concepts: memory allocation 1258d382aafbSBarry Smith 1259d382aafbSBarry Smith M*/ 1260ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith /*MC 1263d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1264d382aafbSBarry Smith 1265eca87e8dSBarry Smith Synopsis: 1266aaa7dc30SBarry Smith #include <petscsys.h> 1267eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1268eca87e8dSBarry Smith 1269eca87e8dSBarry Smith Not Collective 1270eca87e8dSBarry Smith 1271e28ce29aSPatrick Sanan Input Parameters: 1272d382aafbSBarry Smith + m1 - memory to free 1273d382aafbSBarry Smith . m2 - 2nd memory to free 1274d382aafbSBarry Smith . m3 - 3rd memory to free 1275d382aafbSBarry Smith . m4 - 4th memory to free 1276d382aafbSBarry Smith - m5 - 5th memory to free 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith Level: developer 1279d382aafbSBarry Smith 1280*95452b02SPatrick Sanan Notes: 1281*95452b02SPatrick Sanan Memory must have been obtained with PetscMalloc5() 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Concepts: memory allocation 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith M*/ 1288ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith /*MC 1291d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1292d382aafbSBarry Smith 1293eca87e8dSBarry Smith Synopsis: 1294aaa7dc30SBarry Smith #include <petscsys.h> 1295eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1296eca87e8dSBarry Smith 1297eca87e8dSBarry Smith Not Collective 1298eca87e8dSBarry Smith 1299e28ce29aSPatrick Sanan Input Parameters: 1300d382aafbSBarry Smith + m1 - memory to free 1301d382aafbSBarry Smith . m2 - 2nd memory to free 1302d382aafbSBarry Smith . m3 - 3rd memory to free 1303d382aafbSBarry Smith . m4 - 4th memory to free 1304d382aafbSBarry Smith . m5 - 5th memory to free 1305d382aafbSBarry Smith - m6 - 6th memory to free 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith 1308d382aafbSBarry Smith Level: developer 1309d382aafbSBarry Smith 1310*95452b02SPatrick Sanan Notes: 1311*95452b02SPatrick Sanan Memory must have been obtained with PetscMalloc6() 1312d382aafbSBarry Smith 1313d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1314d382aafbSBarry Smith 1315d382aafbSBarry Smith Concepts: memory allocation 1316d382aafbSBarry Smith 1317d382aafbSBarry Smith M*/ 1318ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1319d382aafbSBarry Smith 1320d382aafbSBarry Smith /*MC 1321d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1322d382aafbSBarry Smith 1323eca87e8dSBarry Smith Synopsis: 1324aaa7dc30SBarry Smith #include <petscsys.h> 1325eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1326eca87e8dSBarry Smith 1327eca87e8dSBarry Smith Not Collective 1328eca87e8dSBarry Smith 1329e28ce29aSPatrick Sanan Input Parameters: 1330d382aafbSBarry Smith + m1 - memory to free 1331d382aafbSBarry Smith . m2 - 2nd memory to free 1332d382aafbSBarry Smith . m3 - 3rd memory to free 1333d382aafbSBarry Smith . m4 - 4th memory to free 1334d382aafbSBarry Smith . m5 - 5th memory to free 1335d382aafbSBarry Smith . m6 - 6th memory to free 1336d382aafbSBarry Smith - m7 - 7th memory to free 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith 1339d382aafbSBarry Smith Level: developer 1340d382aafbSBarry Smith 1341*95452b02SPatrick Sanan Notes: 1342*95452b02SPatrick Sanan Memory must have been obtained with PetscMalloc7() 1343d382aafbSBarry Smith 1344d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1345d382aafbSBarry Smith PetscMalloc7() 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith Concepts: memory allocation 1348d382aafbSBarry Smith 1349d382aafbSBarry Smith M*/ 1350ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1351d382aafbSBarry Smith 1352ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1353ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1354efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1355efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13563221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1357ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 1358efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1360d382aafbSBarry Smith 1361d382aafbSBarry Smith /* 1362c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1363c1706be6SHong Zhang */ 1364c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1365c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1366c1706be6SHong Zhang 1367c1706be6SHong Zhang /* 1368a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1369a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1370a5057860SBarry Smith timing etc. 1371a5057860SBarry Smith */ 1372a5057860SBarry Smith typedef double PetscLogDouble; 1373a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1374a5057860SBarry Smith 1375a5057860SBarry Smith /* 137666d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1377d382aafbSBarry Smith */ 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13830acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1384efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1386574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1388d382aafbSBarry Smith 1389d382aafbSBarry Smith /*E 1390d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1391d382aafbSBarry Smith 1392d382aafbSBarry Smith Level: beginner 1393d382aafbSBarry Smith 1394e8a7dd7fSJed Brown Notes: 1395e8a7dd7fSJed Brown Use of this should be avoided if one can directly use MPI_Datatype instead. 139694fbd55eSBarry Smith 1397e28ce29aSPatrick Sanan Developer comment: 1398e28ce29aSPatrick Sanan It would be nice if we could always just use MPI Datatypes, why can we not? 1399d382aafbSBarry Smith 1400d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1401d382aafbSBarry Smith PetscDataTypeGetSize() 1402d382aafbSBarry Smith 1403d382aafbSBarry Smith E*/ 1404d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1405570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14066a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1407d382aafbSBarry Smith 1408d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1409d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1410d382aafbSBarry Smith #else 1411ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1412d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 141359a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141459a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1415570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1416570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1417d382aafbSBarry Smith #else 1418d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1419d382aafbSBarry Smith #endif 1420d382aafbSBarry Smith #endif 1421ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1422d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 142359a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142459a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1425570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1426570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1427d382aafbSBarry Smith #else 1428d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1429d382aafbSBarry Smith #endif 1430d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1431d382aafbSBarry Smith 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14358e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1436d382aafbSBarry Smith 1437d382aafbSBarry Smith /* 1438d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1439d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1440d382aafbSBarry Smith functionality and/or error checking. 1441d382aafbSBarry Smith */ 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1446d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1454a126751eSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrlcat(char[],const char[],size_t); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14582f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14632c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 146647340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14676fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14686991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14696991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1471d382aafbSBarry Smith 1472573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1473573b0fb4SBarry Smith 1474d382aafbSBarry Smith /*S 1475d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1476d382aafbSBarry Smith 1477d382aafbSBarry Smith Level: intermediate 1478d382aafbSBarry Smith 1479d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1480d382aafbSBarry Smith S*/ 1481d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1482d382aafbSBarry Smith 1483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1484014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1485014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 14868e81d068SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscStrInList(const char[],const char[],char,PetscBool*); 1487d382aafbSBarry Smith 1488a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1489a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1490a53986e1SJed Brown 1491d382aafbSBarry Smith /* 1492d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1493d382aafbSBarry Smith */ 1494367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1495570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1496014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14972414b3c7SJed Brown #else 14982414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14992414b3c7SJed Brown #endif 1500570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1501014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1502014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1503d9822059SBarry Smith #else 1504d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1505d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1506d9822059SBarry Smith #endif 1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1508d382aafbSBarry Smith 1509014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1511eb3f98d2SBarry Smith 1512d382aafbSBarry Smith /*S 1513d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1514d382aafbSBarry Smith 1515d382aafbSBarry Smith Level: beginner 1516d382aafbSBarry Smith 1517e28ce29aSPatrick Sanan Note: 1518e28ce29aSPatrick Sanan This is the base class from which all PETSc objects are derived from. 1519d382aafbSBarry Smith 15202b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1521d382aafbSBarry Smith S*/ 1522d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1523d382aafbSBarry Smith 1524270bf2e7SJed Brown /*MC 1525127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1526127c8a3bSJed Brown 1527127c8a3bSJed Brown Level: developer 1528127c8a3bSJed Brown 1529e28ce29aSPatrick Sanan Notes: 1530e28ce29aSPatrick Sanan Unlike pointer values, object ids are never reused. 1531127c8a3bSJed Brown 1532127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1533127c8a3bSJed Brown M*/ 153406e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 153506e41213SSatish Balay typedef int PetscObjectId; 153606e41213SSatish Balay #else 1537bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 153806e41213SSatish Balay #endif 1539127c8a3bSJed Brown 1540127c8a3bSJed Brown /*MC 1541270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1542270bf2e7SJed Brown 1543270bf2e7SJed Brown Level: developer 1544270bf2e7SJed Brown 1545270bf2e7SJed Brown Notes: 1546270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1547270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1548270bf2e7SJed Brown 15498dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1550270bf2e7SJed Brown M*/ 155106e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 155206e41213SSatish Balay typedef int PetscObjectState; 155306e41213SSatish Balay #else 1554bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 155506e41213SSatish Balay #endif 1556270bf2e7SJed Brown 1557d382aafbSBarry Smith /*S 1558140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1559d382aafbSBarry Smith by string name 1560d382aafbSBarry Smith 1561d382aafbSBarry Smith Level: advanced 1562d382aafbSBarry Smith 1563140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1564d382aafbSBarry Smith S*/ 1565140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1566d382aafbSBarry Smith 1567d382aafbSBarry Smith /*E 1568d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1569d382aafbSBarry Smith 1570d382aafbSBarry Smith Level: beginner 1571d382aafbSBarry Smith 15721cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15731cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15741cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15751cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15761cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1577d382aafbSBarry Smith 1578d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1579d382aafbSBarry Smith E*/ 1580d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1581d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1582d6a4318aSJed Brown 1583639ff905SBarry Smith /* 1584639ff905SBarry Smith Defines PETSc error handling. 1585639ff905SBarry Smith */ 1586639ff905SBarry Smith #include <petscerror.h> 1587d382aafbSBarry Smith 15880700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1589014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1590014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1592d382aafbSBarry Smith 1593d382aafbSBarry Smith /* 1594d382aafbSBarry Smith Routines that get memory usage information from the OS 1595d382aafbSBarry Smith */ 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1599b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1600d382aafbSBarry Smith 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1603d382aafbSBarry Smith 1604d382aafbSBarry Smith /* 1605d382aafbSBarry Smith Initialization of PETSc 1606d382aafbSBarry Smith */ 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1617d382aafbSBarry Smith 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1619607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1620d382aafbSBarry Smith 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1625d382aafbSBarry Smith 1626d382aafbSBarry Smith /* 1627d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16282981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1629d382aafbSBarry Smith */ 1630638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1631638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1632638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1633d382aafbSBarry Smith 1634d382aafbSBarry Smith /* 1635d382aafbSBarry Smith Functions that can act on any PETSc object. 1636d382aafbSBarry Smith */ 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1655bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1656bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16590eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16600eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1662d382aafbSBarry Smith 1663665c2dedSJed Brown #include <petscviewertypes.h> 1664639ff905SBarry Smith #include <petscoptions.h> 1665639ff905SBarry Smith 16660633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16670633abcbSJed Brown 1668639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1669c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1670dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1671639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16720005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16730005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1681685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 16844099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1688d382aafbSBarry Smith 1689e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16907aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1691e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1692e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1693e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1694e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1695e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1696e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1697e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1698e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1699e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 170015681b3cSBarry Smith 1701ec7429eaSBarry Smith #else 17027aab2a10SBarry Smith #define PetscSAWsBlock() 0 1703e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1704e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1705e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1706e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1707e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1708e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1709e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1710e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1711e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 171215681b3cSBarry Smith 1713ec7429eaSBarry Smith #endif 1714b90c6cbeSBarry Smith 17157d5d4d99SBarry Smith typedef void* PetscDLHandle; 1716e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 171782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17207d5d4d99SBarry Smith 17215fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1722a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17235fe58b6fSBarry Smith #endif 17247eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1725a64a8e02SBarry Smith 1726d382aafbSBarry Smith /*S 1727140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1728d382aafbSBarry Smith 17291d0fab5eSBarry Smith Level: developer 1730d382aafbSBarry Smith 1731e28ce29aSPatrick Sanan Notes: 1732e28ce29aSPatrick Sanan Used by PetscObjectCompose() and PetscObjectQuery() 17331d0fab5eSBarry Smith 1734140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1735d382aafbSBarry Smith S*/ 1736140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1737d382aafbSBarry Smith 1738140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1740140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1741140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1742140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1743140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1744d382aafbSBarry Smith 1745d382aafbSBarry Smith /* 1746503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1747d382aafbSBarry Smith link libraries that will be loaded as needed. 1748d382aafbSBarry Smith */ 1749a240a19fSJed Brown 1750a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1751a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1752140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17531c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17541c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1755140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1756140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1757140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1758140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1759d382aafbSBarry Smith 1760d382aafbSBarry Smith /*S 1761d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1762d382aafbSBarry Smith 1763d382aafbSBarry Smith Level: advanced 1764d382aafbSBarry Smith 1765d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1766d382aafbSBarry Smith S*/ 1767d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1768014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1776d382aafbSBarry Smith 1777d382aafbSBarry Smith /* 1778d382aafbSBarry Smith Useful utility routines 1779d382aafbSBarry Smith */ 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 17866ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxInt(MPI_Comm,PetscInt[],PetscInt[]); 17876ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxReal(MPI_Comm,PetscReal[],PetscReal[]); 1788d382aafbSBarry Smith 1789503cfb0cSBarry Smith /* 1790ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1791503cfb0cSBarry Smith 1792e28ce29aSPatrick Sanan Notes: 1793e28ce29aSPatrick Sanan This is useful in cases like 1794503cfb0cSBarry Smith $ int *a; 1795ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17961cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1797503cfb0cSBarry Smith */ 1798d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1799503cfb0cSBarry Smith 1800d382aafbSBarry Smith /*MC 1801d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1802d382aafbSBarry Smith 1803d382aafbSBarry Smith Synopsis: 1804aaa7dc30SBarry Smith #include <petscsys.h> 1805d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1806d382aafbSBarry Smith 1807eca87e8dSBarry Smith Not Collective 1808eca87e8dSBarry Smith 1809d382aafbSBarry Smith Input Parameters: 1810d382aafbSBarry Smith . format - the usual printf() format string 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith Level: developer 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith Fortran Note: 1815d382aafbSBarry Smith This routine is not supported in Fortran. 1816d382aafbSBarry Smith 1817d382aafbSBarry Smith Concepts: help messages^printing 1818d382aafbSBarry Smith Concepts: printing^help messages 1819d382aafbSBarry Smith 1820d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1821d382aafbSBarry Smith M*/ 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1823d382aafbSBarry Smith 1824fcfd50ebSBarry Smith /* 1825fcfd50ebSBarry Smith Defines PETSc profiling. 1826fcfd50ebSBarry Smith */ 18272c8e378dSBarry Smith #include <petsclog.h> 1828fcfd50ebSBarry Smith 1829fcfd50ebSBarry Smith /* 1830fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1831fcfd50ebSBarry Smith */ 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1839fcfd50ebSBarry Smith 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1843d382aafbSBarry Smith 1844d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1846016831caSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*); 184774ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1848d382aafbSBarry Smith #endif 1849d382aafbSBarry Smith 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18520ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1857d382aafbSBarry Smith 1858d382aafbSBarry Smith /*S 1859d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith Level: advanced 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1864d382aafbSBarry Smith S*/ 1865014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1866d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1870014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1871014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1872b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1873d382aafbSBarry Smith 1874d382aafbSBarry Smith /* 1875d382aafbSBarry Smith For use in debuggers 1876d382aafbSBarry Smith */ 1877014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1878014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1881014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1882d382aafbSBarry Smith 1883a663daf8SBarry Smith #include <stddef.h> 1884a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1885d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1886d382aafbSBarry Smith #include <stdlib.h> 1887d382aafbSBarry Smith #endif 18886c7e564aSBarry Smith 18894a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1890d382aafbSBarry Smith #include <xmmintrin.h> 1891d382aafbSBarry Smith #endif 1892d382aafbSBarry Smith 1893d382aafbSBarry Smith /*@C 1894d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1895d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1896d382aafbSBarry Smith PetscMemmove() in that case. 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith Not Collective 1899d382aafbSBarry Smith 1900d382aafbSBarry Smith Input Parameters: 1901d382aafbSBarry Smith + b - pointer to initial memory space 1902d382aafbSBarry Smith - n - length (in bytes) of space to copy 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith Output Parameter: 1905d382aafbSBarry Smith . a - pointer to copy space 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith Level: intermediate 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith Compile Option: 1910d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1911d382aafbSBarry Smith for memory copies on double precision values. 1912d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1913d382aafbSBarry Smith for memory copies on double precision values. 1914d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1915d382aafbSBarry Smith for memory copies on double precision values. 1916d382aafbSBarry Smith 1917d382aafbSBarry Smith Note: 1918d382aafbSBarry Smith This routine is analogous to memcpy(). 1919d382aafbSBarry Smith 19201fd49c25SBarry Smith Not available from Fortran 19211fd49c25SBarry Smith 1922f5f57ec0SBarry Smith Developer Note: this is inlined for fastest performance 1923f5f57ec0SBarry Smith 1924d382aafbSBarry Smith Concepts: memory^copying 1925d382aafbSBarry Smith Concepts: copying^memory 1926d382aafbSBarry Smith 19271fd49c25SBarry Smith .seealso: PetscMemmove(), PetscStrallocpy() 1928d382aafbSBarry Smith 1929d382aafbSBarry Smith @*/ 19307087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1931d382aafbSBarry Smith { 1932d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1933c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1934c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1935a7e36092SMatthew G Knepley PetscFunctionBegin; 1936e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1937e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1938a7e36092SMatthew G Knepley #else 1939d382aafbSBarry Smith PetscFunctionBegin; 1940a7e36092SMatthew G Knepley #endif 1941a47a537aSLisandro Dalcin if (a != b && n > 0) { 1942d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1943e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1944d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1945d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1946d382aafbSBarry Smith #endif 1947d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1948c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1949d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1950d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1951c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1952c5df96a5SBarry Smith PetscErrorCode ierr; 1953c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19548b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1955d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1956d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1957d382aafbSBarry Smith #else 1958d382aafbSBarry Smith size_t i; 1959d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1960d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith } else { 1963d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1964d382aafbSBarry Smith } 1965d382aafbSBarry Smith #else 1966d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1967d382aafbSBarry Smith #endif 1968d382aafbSBarry Smith } 1969d382aafbSBarry Smith PetscFunctionReturn(0); 1970d382aafbSBarry Smith } 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith /*@C 1973d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith Not Collective 1976d382aafbSBarry Smith 1977d382aafbSBarry Smith Input Parameters: 1978d382aafbSBarry Smith + a - pointer to beginning memory location 1979d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith Level: intermediate 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith Compile Option: 1984d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1985d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1986d382aafbSBarry Smith 19871fd49c25SBarry Smith Not available from Fortran 19881fd49c25SBarry Smith 1989503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1990503cfb0cSBarry Smith 1991d382aafbSBarry Smith Concepts: memory^zeroing 1992d382aafbSBarry Smith Concepts: zeroing^memory 1993d382aafbSBarry Smith 1994d382aafbSBarry Smith .seealso: PetscMemcpy() 1995d382aafbSBarry Smith @*/ 19967087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1997d382aafbSBarry Smith { 1998d382aafbSBarry Smith if (n > 0) { 1999d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2000e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2001d382aafbSBarry Smith #endif 2002d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2003d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2004d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2005d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2006d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2007d382aafbSBarry Smith } else { 2008d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2009d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2010d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2011d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2012d382aafbSBarry Smith } else { 2013d382aafbSBarry Smith #endif 2014d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2015d382aafbSBarry Smith bzero((char *)a,n); 2016d382aafbSBarry Smith #else 2017d382aafbSBarry Smith memset((char*)a,0,n); 2018d382aafbSBarry Smith #endif 2019d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2020d382aafbSBarry Smith } 2021d382aafbSBarry Smith #endif 2022d382aafbSBarry Smith } 2023d382aafbSBarry Smith return 0; 2024d382aafbSBarry Smith } 2025d382aafbSBarry Smith 2026d382aafbSBarry Smith /*MC 2027d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2028d382aafbSBarry Smith 2029eca87e8dSBarry Smith Synopsis: 2030aaa7dc30SBarry Smith #include <petscsys.h> 2031eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2032eca87e8dSBarry Smith 2033d382aafbSBarry Smith Not Collective 2034d382aafbSBarry Smith 2035d382aafbSBarry Smith Input Parameters: 2036d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2037d382aafbSBarry Smith . n - number of elements to fetch 2038d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203950d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2040d382aafbSBarry Smith 2041d382aafbSBarry Smith Level: developer 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith Notes: 2044d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2045d382aafbSBarry Smith 204650d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204750d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204850d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 205063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 205163cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2054d382aafbSBarry Smith address). 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith Concepts: memory 2057d382aafbSBarry Smith M*/ 2058d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2059d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2060d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2061d382aafbSBarry Smith } while (0) 2062d382aafbSBarry Smith 2063d382aafbSBarry Smith /* 2064d382aafbSBarry Smith Determine if some of the kernel computation routines use 2065d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2066d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2067d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2068e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2069d382aafbSBarry Smith */ 2070d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2073d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2074d382aafbSBarry Smith #endif 2075d382aafbSBarry Smith 20765a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20775a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2078d382aafbSBarry Smith #endif 2079d382aafbSBarry Smith 2080d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2081d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2082d382aafbSBarry Smith #endif 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2085d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2086d382aafbSBarry Smith #endif 2087d382aafbSBarry Smith 2088d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2089d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2090d382aafbSBarry Smith #endif 2091d382aafbSBarry Smith 2092d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2093d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2094d382aafbSBarry Smith #endif 2095d382aafbSBarry Smith 2096d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2097d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2098d382aafbSBarry Smith #endif 2099d382aafbSBarry Smith 2100d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2101d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2102d382aafbSBarry Smith #endif 2103d382aafbSBarry Smith 2104d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2105d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2106d382aafbSBarry Smith #endif 2107d382aafbSBarry Smith 2108d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2109d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2110d382aafbSBarry Smith #endif 2111d382aafbSBarry Smith 2112d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2113d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2114d382aafbSBarry Smith #endif 2115d382aafbSBarry Smith 2116d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2117d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2118d382aafbSBarry Smith #endif 2119d382aafbSBarry Smith 2120d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2121d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2122d382aafbSBarry Smith #endif 2123d382aafbSBarry Smith 2124d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2125d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2126d382aafbSBarry Smith #endif 2127d382aafbSBarry Smith 2128d382aafbSBarry Smith #endif 2129d382aafbSBarry Smith 2130d382aafbSBarry Smith /* 2131d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2132d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2133d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2134d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2135d382aafbSBarry Smith ugly extern "C" {} wrappers. 2136d382aafbSBarry Smith */ 2137d382aafbSBarry Smith #if defined(__cplusplus) 2138d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2139d382aafbSBarry Smith #define EXTERN_C_END } 2140d382aafbSBarry Smith #else 2141d382aafbSBarry Smith #define EXTERN_C_BEGIN 2142d382aafbSBarry Smith #define EXTERN_C_END 2143d382aafbSBarry Smith #endif 2144d382aafbSBarry Smith 2145d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith /*MC 2148d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2149d382aafbSBarry Smith communication 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith Level: beginner 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2156d382aafbSBarry Smith M*/ 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith /*MC 2159d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2160390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2161390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2162390e1bf2SBarry Smith 2163e28ce29aSPatrick Sanan Notes: 2164e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. They will automatically work correctly regardless of the size of PetscScalar. 2165d382aafbSBarry Smith 2166d382aafbSBarry Smith Level: beginner 2167d382aafbSBarry Smith 2168e28ce29aSPatrick Sanan .seealso: PetscReal, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2169d382aafbSBarry Smith M*/ 2170d382aafbSBarry Smith 2171d382aafbSBarry Smith /*MC 21728619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21738619c96cSJed Brown 21748619c96cSJed Brown Synopsis: 21758619c96cSJed Brown #include <petscsys.h> 21768619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21778619c96cSJed Brown 2178e28ce29aSPatrick Sanan Notes: 2179e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2180e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscComplex. 2181390e1bf2SBarry Smith 2182390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2183390e1bf2SBarry Smith 21848cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21858619c96cSJed Brown 2186e28ce29aSPatrick Sanan Level: beginner 2187e28ce29aSPatrick Sanan 2188e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 21898619c96cSJed Brown M*/ 21908619c96cSJed Brown 21918619c96cSJed Brown /*MC 2192d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2193d382aafbSBarry Smith 2194e28ce29aSPatrick Sanan 2195e28ce29aSPatrick Sanan Notes: 2196e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX, etc. for operations. 2197e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscReal. 2198e28ce29aSPatrick Sanan 2199e28ce29aSPatrick Sanan See PetscScalar for details on how to ./configure the size of PetscReal. 2200e28ce29aSPatrick Sanan 2201d382aafbSBarry Smith Level: beginner 2202d382aafbSBarry Smith 2203e28ce29aSPatrick Sanan .seealso: PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2204d382aafbSBarry Smith M*/ 2205d382aafbSBarry Smith 2206d382aafbSBarry Smith /*MC 2207d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2208d382aafbSBarry Smith 2209e28ce29aSPatrick Sanan Notes: 2210e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalar values, pass this value. 2211e28ce29aSPatrick Sanan 2212d382aafbSBarry Smith Level: beginner 2213d382aafbSBarry Smith 2214e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_COMPLEX, MPIU_INT 2215e28ce29aSPatrick Sanan M*/ 2216d382aafbSBarry Smith 2217e28ce29aSPatrick Sanan /*MC 2218e28ce29aSPatrick Sanan MPIU_COMPLEX - MPI datatype corresponding to PetscComplex 2219e28ce29aSPatrick Sanan 2220e28ce29aSPatrick Sanan Notes: 2221e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscComplex or array of PetscComplex values, pass this value. 2222e28ce29aSPatrick Sanan 2223e28ce29aSPatrick Sanan Level: beginner 2224e28ce29aSPatrick Sanan 2225e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 2226e28ce29aSPatrick Sanan M*/ 2227e28ce29aSPatrick Sanan 2228e28ce29aSPatrick Sanan /*MC 2229e28ce29aSPatrick Sanan MPIU_REAL - MPI datatype corresponding to PetscReal 2230e28ce29aSPatrick Sanan 2231e28ce29aSPatrick Sanan Notes: 2232e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscReal or array of PetscReal values, pass this value. 2233e28ce29aSPatrick Sanan 2234e28ce29aSPatrick Sanan Level: beginner 2235e28ce29aSPatrick Sanan 2236e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2237d382aafbSBarry Smith M*/ 2238d382aafbSBarry Smith 2239d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2240d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2241014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2242014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2243d382aafbSBarry Smith #else 2244d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2245d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2246d382aafbSBarry Smith #endif 2247d382aafbSBarry Smith #endif 2248d382aafbSBarry Smith 2249d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2250d382aafbSBarry Smith 2251d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2252d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2253d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2254d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2255d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2256d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2257d382aafbSBarry Smith 225861b0d812SBarry Smith /*@C 225961b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 226061b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 226161b0d812SBarry Smith 226261b0d812SBarry Smith Not Collective 226361b0d812SBarry Smith 226461b0d812SBarry Smith Input Parameter: 226561b0d812SBarry Smith . a - the PetscInt value 226661b0d812SBarry Smith 226761b0d812SBarry Smith Output Parameter: 226861b0d812SBarry Smith . b - the resulting PetscBLASInt value 226961b0d812SBarry Smith 227061b0d812SBarry Smith Level: advanced 227161b0d812SBarry Smith 22721fd49c25SBarry Smith Not available from Fortran 22731fd49c25SBarry Smith 227461b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 227561b0d812SBarry Smith @*/ 2276c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2277c5df96a5SBarry Smith { 2278c5df96a5SBarry Smith PetscFunctionBegin; 2279ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2280c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2281c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2282c5df96a5SBarry Smith #endif 2283c5df96a5SBarry Smith PetscFunctionReturn(0); 2284c5df96a5SBarry Smith } 2285c5df96a5SBarry Smith 228661b0d812SBarry Smith /*@C 228761b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 228861b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 228961b0d812SBarry Smith 229061b0d812SBarry Smith Not Collective 229161b0d812SBarry Smith 229261b0d812SBarry Smith Input Parameter: 229361b0d812SBarry Smith . a - the PetscInt value 229461b0d812SBarry Smith 229561b0d812SBarry Smith Output Parameter: 229661b0d812SBarry Smith . b - the resulting PetscMPIInt value 229761b0d812SBarry Smith 229861b0d812SBarry Smith Level: advanced 229961b0d812SBarry Smith 23001fd49c25SBarry Smith Not available from Fortran 23011fd49c25SBarry Smith 230261b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 230361b0d812SBarry Smith @*/ 23044dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 23054dc2109aSBarry Smith { 23064dc2109aSBarry Smith PetscFunctionBegin; 2307ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 23084dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 23094dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 23104dc2109aSBarry Smith #endif 23114dc2109aSBarry Smith PetscFunctionReturn(0); 23124dc2109aSBarry Smith } 23134dc2109aSBarry Smith 2314bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 23152f18eb33SBarry Smith 23162f18eb33SBarry Smith /*@C 23172f18eb33SBarry Smith 23182f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 23192f18eb33SBarry Smith 23202f18eb33SBarry Smith Not Collective 23212f18eb33SBarry Smith 23222f18eb33SBarry Smith Input Parameter: 23232f18eb33SBarry Smith + a - the PetscReal value 23242f18eb33SBarry Smith - b - the second value 23252f18eb33SBarry Smith 2326390e1bf2SBarry Smith Returns: 2327390e1bf2SBarry Smith the result as a PetscInt value 23282f18eb33SBarry Smith 2329bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23302f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23312f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23322f18eb33SBarry Smith 2333e28ce29aSPatrick Sanan Developers Note: 2334e28ce29aSPatrick Sanan We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23352f18eb33SBarry Smith 23362f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23372f18eb33SBarry Smith 23381fd49c25SBarry Smith Not available from Fortran 23391fd49c25SBarry Smith 23402f18eb33SBarry Smith Level: advanced 23412f18eb33SBarry Smith 2342390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23432f18eb33SBarry Smith @*/ 23442f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23452f18eb33SBarry Smith { 2346bafee8b4SSatish Balay PetscInt64 r; 23472f18eb33SBarry Smith 2348bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23492f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23502f18eb33SBarry Smith return (PetscInt) r; 23512f18eb33SBarry Smith } 23522f18eb33SBarry Smith 23532f18eb33SBarry Smith /*@C 23542f18eb33SBarry Smith 23552f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23562f18eb33SBarry Smith 23572f18eb33SBarry Smith Not Collective 23582f18eb33SBarry Smith 23592f18eb33SBarry Smith Input Parameter: 23602f18eb33SBarry Smith + a - the PetscInt value 23612f18eb33SBarry Smith - b - the second value 23622f18eb33SBarry Smith 2363390e1bf2SBarry Smith Returns: 2364390e1bf2SBarry Smith the result as a PetscInt value 23652f18eb33SBarry Smith 2366bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23672f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23682f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23692f18eb33SBarry Smith 23701fd49c25SBarry Smith Not available from Fortran 23711fd49c25SBarry Smith 23722f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23732f18eb33SBarry Smith 23742f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23752f18eb33SBarry Smith 23762f18eb33SBarry Smith Level: advanced 23772f18eb33SBarry Smith 2378390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23792f18eb33SBarry Smith @*/ 23802f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23812f18eb33SBarry Smith { 2382bafee8b4SSatish Balay PetscInt64 r; 23832f18eb33SBarry Smith 2384bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23852f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23862f18eb33SBarry Smith return (PetscInt) r; 23872f18eb33SBarry Smith } 23882f18eb33SBarry Smith 2389f91af8c7SBarry Smith /*@C 2390f91af8c7SBarry Smith 2391f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2392f91af8c7SBarry Smith 2393f91af8c7SBarry Smith Not Collective 2394f91af8c7SBarry Smith 2395f91af8c7SBarry Smith Input Parameter: 2396f91af8c7SBarry Smith + a - the PetscInt value 2397f91af8c7SBarry Smith - b - the second value 2398f91af8c7SBarry Smith 2399390e1bf2SBarry Smith Returns: 2400390e1bf2SBarry Smith the result as a PetscInt value 2401f91af8c7SBarry Smith 2402bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2403f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2404f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2405f91af8c7SBarry Smith 2406f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2407f91af8c7SBarry Smith 2408f5f57ec0SBarry Smith Not available from Fortran 2409f5f57ec0SBarry Smith 2410f91af8c7SBarry Smith Level: advanced 2411f91af8c7SBarry Smith 2412390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2413f91af8c7SBarry Smith @*/ 2414f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2415f91af8c7SBarry Smith { 2416bafee8b4SSatish Balay PetscInt64 r; 2417f91af8c7SBarry Smith 2418bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2419f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2420f91af8c7SBarry Smith return (PetscInt) r; 2421f91af8c7SBarry Smith } 2422f91af8c7SBarry Smith 24232f18eb33SBarry Smith /*@C 24242f18eb33SBarry Smith 24252f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 24262f18eb33SBarry Smith 24272f18eb33SBarry Smith Not Collective 24282f18eb33SBarry Smith 24292f18eb33SBarry Smith Input Parameter: 24302f18eb33SBarry Smith + a - the PetscInt value 24312f18eb33SBarry Smith - b - the second value 24322f18eb33SBarry Smith 24332f18eb33SBarry Smith Output Parameter:ma 2434390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24352f18eb33SBarry Smith 2436bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24372f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24382f18eb33SBarry Smith 2439f5f57ec0SBarry Smith Not available from Fortran 2440f5f57ec0SBarry Smith 2441220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24422f18eb33SBarry Smith 24432f18eb33SBarry Smith Level: advanced 24442f18eb33SBarry Smith 2445220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 24462f18eb33SBarry Smith @*/ 24472f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24482f18eb33SBarry Smith { 2449bafee8b4SSatish Balay PetscInt64 r; 24502f18eb33SBarry Smith 24512f18eb33SBarry Smith PetscFunctionBegin; 2452bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24532f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24542f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24552f18eb33SBarry Smith #endif 2456f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2457f91af8c7SBarry Smith PetscFunctionReturn(0); 2458f91af8c7SBarry Smith } 2459f91af8c7SBarry Smith 2460f91af8c7SBarry Smith /*@C 2461f91af8c7SBarry Smith 2462fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2463f91af8c7SBarry Smith 2464f91af8c7SBarry Smith Not Collective 2465f91af8c7SBarry Smith 2466f91af8c7SBarry Smith Input Parameter: 2467f91af8c7SBarry Smith + a - the PetscInt value 2468f91af8c7SBarry Smith - b - the second value 2469f91af8c7SBarry Smith 2470f91af8c7SBarry Smith Output Parameter:ma 2471390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2472f91af8c7SBarry Smith 2473bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2474f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2475f91af8c7SBarry Smith 2476f5f57ec0SBarry Smith Not available from Fortran 2477f5f57ec0SBarry Smith 2478f91af8c7SBarry Smith Level: advanced 2479f91af8c7SBarry Smith 2480390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2481f91af8c7SBarry Smith @*/ 2482f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2483f91af8c7SBarry Smith { 2484bafee8b4SSatish Balay PetscInt64 r; 2485f91af8c7SBarry Smith 2486f91af8c7SBarry Smith PetscFunctionBegin; 2487bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2488f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2489f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2490f91af8c7SBarry Smith #endif 2491f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24922f18eb33SBarry Smith PetscFunctionReturn(0); 24932f18eb33SBarry Smith } 2494c5df96a5SBarry Smith 2495d382aafbSBarry Smith /* 24962981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2497d382aafbSBarry Smith */ 2498d382aafbSBarry Smith #if defined(hz) 2499d382aafbSBarry Smith #undef hz 2500d382aafbSBarry Smith #endif 2501d382aafbSBarry Smith 2502d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2503d382aafbSBarry Smith 2504d382aafbSBarry Smith 2505d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2506d382aafbSBarry Smith #include <limits.h> 2507d382aafbSBarry Smith #endif 2508d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2509d382aafbSBarry Smith #include <sys/param.h> 2510d382aafbSBarry Smith #endif 2511d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2512d382aafbSBarry Smith #include <sys/types.h> 2513d382aafbSBarry Smith #endif 2514d382aafbSBarry Smith #if defined(MAXPATHLEN) 2515d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2516d382aafbSBarry Smith #elif defined(MAX_PATH) 2517d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2518d382aafbSBarry Smith #elif defined(_MAX_PATH) 2519d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2520d382aafbSBarry Smith #else 2521d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2522d382aafbSBarry Smith #endif 2523d382aafbSBarry Smith 2524d382aafbSBarry Smith /*MC 2525d382aafbSBarry Smith 252666d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 252766d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 252866d79e26SBarry Smith 252966d79e26SBarry Smith 253066d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 253166d79e26SBarry Smith 253266d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 253366d79e26SBarry Smith 253466d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 253566d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 253666d79e26SBarry Smith 253766d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 253866d79e26SBarry Smith 253966d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 254066d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 254166d79e26SBarry Smith version number (x.y.z). 254266d79e26SBarry Smith 254366d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 254466d79e26SBarry Smith 254566d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 254666d79e26SBarry Smith 254766d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 254866d79e26SBarry Smith 254966d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 255066d79e26SBarry Smith 255166d79e26SBarry Smith Level: intermediate 255266d79e26SBarry Smith 255366d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 255466d79e26SBarry Smith 255566d79e26SBarry Smith M*/ 255666d79e26SBarry Smith 255766d79e26SBarry Smith /*MC 255866d79e26SBarry Smith 25591b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 25601b266c99SBarry Smith of every function and module definition you need something like 2561d382aafbSBarry Smith 2562d382aafbSBarry Smith $ 2563af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 25640f665fc7SPatrick Sanan $ use petscXXX 25651b266c99SBarry Smith 2566692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 25671b266c99SBarry Smith 2568d382aafbSBarry Smith $ XXX variablename 25691b266c99SBarry Smith $ type(tXXX) variablename 25701b266c99SBarry Smith 2571692afcd8SPatrick Sanan For example, 25721b266c99SBarry Smith 2573bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 25741b266c99SBarry Smith $ use petscvec 2575d382aafbSBarry Smith $ 2576692afcd8SPatrick Sanan $ Vec b 2577692afcd8SPatrick Sanan $ type(tVec) x 2578d382aafbSBarry Smith 2579d382aafbSBarry Smith Level: beginner 2580d382aafbSBarry Smith 2581d382aafbSBarry Smith M*/ 2582d382aafbSBarry Smith 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 258927710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25905f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2591d382aafbSBarry Smith 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 259322ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 259560e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2596d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 26006c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 260117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 260217d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 260517df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 260739f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2609745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 261039f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 26146c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 26156c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2616e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2617d382aafbSBarry Smith 2618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2620d382aafbSBarry Smith 262176bdecfbSBarry Smith /*J 2622d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2623d382aafbSBarry Smith 2624d382aafbSBarry Smith Level: beginner 2625d382aafbSBarry Smith 2626e28ce29aSPatrick Sanan Notes: 2627e28ce29aSPatrick Sanan To use SPRNG or RANDOM123 you must have ./configure PETSc 262825ccb61fSToby Isaac with the option --download-sprng or --download-random123 2629d382aafbSBarry Smith 26308f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 263176bdecfbSBarry Smith J*/ 263219fd82e9SBarry Smith typedef const char* PetscRandomType; 2633d382aafbSBarry Smith #define PETSCRAND "rand" 2634d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2635d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2636c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 263725ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2638d382aafbSBarry Smith 2639d382aafbSBarry Smith /* Logging support */ 2640014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2641d382aafbSBarry Smith 2642607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2643d382aafbSBarry Smith 2644d382aafbSBarry Smith /*S 2645d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2646d382aafbSBarry Smith 2647d382aafbSBarry Smith Level: intermediate 2648d382aafbSBarry Smith 2649d382aafbSBarry Smith Concepts: random numbers 2650d382aafbSBarry Smith 2651d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2652d382aafbSBarry Smith S*/ 2653d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2654d382aafbSBarry Smith 2655d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2656140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2657d382aafbSBarry Smith 2658bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 265919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 266119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2662685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2664d382aafbSBarry Smith 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2674d382aafbSBarry Smith 2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 268297540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 268397540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2684d382aafbSBarry Smith 2685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2687014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2688014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2689014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2690014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2696c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2697e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2698c891a504SStefano Zampini #endif 2699d382aafbSBarry Smith 2700d382aafbSBarry Smith /* 2701d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2702d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2703d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2704d382aafbSBarry Smith PetscBinarySeek(). 2705d382aafbSBarry Smith */ 2706d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2707d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2708d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2709d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2710d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2711d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2712d382aafbSBarry Smith 2713d382aafbSBarry Smith /*E 2714d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2715d382aafbSBarry Smith 2716d382aafbSBarry Smith Level: advanced 2717d382aafbSBarry Smith 2718d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2719d382aafbSBarry Smith E*/ 2720d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2721014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2722014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2723014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2724d382aafbSBarry Smith 2725014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2726014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2727014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2728014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2729014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2730014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2731d382aafbSBarry Smith 2732014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2733014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2734014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2735014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2736014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2737cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2738cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2739d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2740d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2741d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2742d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27436afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27446afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27456afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27466afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27476afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2748d382aafbSBarry Smith 27496145cd65SJed Brown /*E 27506145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27516145cd65SJed Brown 27526145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27536145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27546145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27556145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27566145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27571654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27581654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27596145cd65SJed Brown 27606145cd65SJed Brown Level: developer 27616145cd65SJed Brown 27626145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27636145cd65SJed Brown E*/ 27646145cd65SJed Brown typedef enum { 27656145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27666145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27671654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 276812af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27696145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27706145cd65SJed Brown } PetscBuildTwoSidedType; 27716145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27726145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27736145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27746145cd65SJed Brown 2775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2776d382aafbSBarry Smith 2777d382aafbSBarry Smith /*E 2778d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2779d382aafbSBarry Smith 2780d382aafbSBarry Smith Level: beginner 2781d382aafbSBarry Smith 2782d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2783d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2784d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2785d382aafbSBarry Smith E*/ 27866fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2787d382aafbSBarry Smith 2788d382aafbSBarry Smith /*MC 2789d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2790d382aafbSBarry Smith 2791d382aafbSBarry Smith Level: beginner 2792d382aafbSBarry Smith 2793d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2794eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2795eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2796d382aafbSBarry Smith 2797d382aafbSBarry Smith M*/ 2798d382aafbSBarry Smith 2799d382aafbSBarry Smith /*MC 2800d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2801d382aafbSBarry Smith value into that location 2802d382aafbSBarry Smith 2803d382aafbSBarry Smith Level: beginner 2804d382aafbSBarry Smith 2805d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2806eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2807eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2808d382aafbSBarry Smith 2809d382aafbSBarry Smith M*/ 2810d382aafbSBarry Smith 2811d382aafbSBarry Smith /*MC 2812d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2813d382aafbSBarry Smith 2814d382aafbSBarry Smith Level: beginner 2815d382aafbSBarry Smith 2816d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2817d382aafbSBarry Smith 2818d382aafbSBarry Smith M*/ 2819d382aafbSBarry Smith 2820ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2821ce94432eSBarry Smith 282245487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 282345487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 282445487dadSJed Brown 2825d382aafbSBarry Smith /*S 2826306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2827306c2d5bSBarry Smith 2828e28ce29aSPatrick Sanan Notes: 2829e28ce29aSPatrick Sanan After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2830306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 28313bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2832306c2d5bSBarry Smith 2833306c2d5bSBarry Smith Sample Usage: 2834306c2d5bSBarry Smith PetscSubcommCreate() 2835306c2d5bSBarry Smith PetscSubcommSetNumber() 2836306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2837306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2838306c2d5bSBarry Smith PetscSubcommDestroy() 2839d382aafbSBarry Smith 2840d382aafbSBarry Smith Level: advanced 2841d382aafbSBarry Smith 2842d382aafbSBarry Smith Concepts: communicator, create 2843306c2d5bSBarry Smith 2844306c2d5bSBarry Smith Notes: 2845306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 28463bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2847306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2848306c2d5bSBarry Smith 2849e28ce29aSPatrick Sanan Example: Consider a communicator with six processes split into 3 subcommunicators. 2850306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2851306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2852306c2d5bSBarry Smith 2853e28ce29aSPatrick Sanan Developer Notes: 2854e28ce29aSPatrick Sanan This is used in objects such as PCREDUNDANT to manage the subcommunicators on which the redundant computations 2855306c2d5bSBarry Smith are performed. 2856306c2d5bSBarry Smith 2857306c2d5bSBarry Smith 2858306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2859306c2d5bSBarry Smith 2860d382aafbSBarry Smith S*/ 2861d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2862d382aafbSBarry Smith 2863d382aafbSBarry Smith struct _n_PetscSubcomm { 2864d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2865d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2866306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 286745487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 286845487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2869708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 287045487dadSJed Brown PetscSubcommType type; 2871e5acf8a4SHong Zhang char *subcommprefix; 2872d382aafbSBarry Smith }; 2873d382aafbSBarry Smith 2874c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2875306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 287636be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2877014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2880014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 288165d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2882053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2883f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2884e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2885d382aafbSBarry Smith 28860f453b92SJed Brown /*S 28879962606eSBarry Smith PetscHeap - A simple class for managing heaps 28889962606eSBarry Smith 28899962606eSBarry Smith Level: intermediate 28909962606eSBarry Smith 28919962606eSBarry Smith Concepts: random numbers 28929962606eSBarry Smith 28939962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 28949962606eSBarry Smith S*/ 28959962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 28969962606eSBarry Smith 28979962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 28989962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 28999962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 29009962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 29019962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 29029962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 29039962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 29049962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 29059962606eSBarry Smith 29065e71baefSBarry Smith PETSC_EXTERN PetscErrorCode PetscProcessPlacementView(PetscViewer); 290742218b76SBarry Smith typedef struct _n_PetscCommShared* PetscCommShared; 290842218b76SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGet(MPI_Comm,PetscCommShared*); 29094e73f77fSBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGlobalToLocal(PetscCommShared,PetscMPIInt,PetscMPIInt*); 2910ee655a11SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGetComm(PetscCommShared,MPI_Comm*); 29115e71baefSBarry Smith 29129962606eSBarry Smith /*S 29130f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 29140f453b92SJed Brown 29150f453b92SJed Brown Level: developer 29160f453b92SJed Brown 29170f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 29180f453b92SJed Brown S*/ 29190f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 292013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 29210f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 292213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2923137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2924137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2925137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 292613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 292713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 29280f453b92SJed Brown 29295e71baefSBarry Smith 2930471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2931471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2932471ecdacSJed Brown * possible. */ 293335005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2934d382aafbSBarry Smith 29359de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 29369de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 29379de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 29389de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 29399de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 29409de0f6ecSBarry Smith 2941ace2fbaeSBarry Smith #include <stdarg.h> 2942ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 2943ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 2944ace2fbaeSBarry Smith 2945268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2946fbfcfee5SBarry Smith 29471f817a21SBarry Smith /*@C 29481f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 29491f817a21SBarry Smith 29501f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 29511f817a21SBarry Smith 29521f817a21SBarry Smith Input Parameters: 29531f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 29541f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 29551f817a21SBarry Smith 2956850545d0SSatish Balay Level: intermediate 2957850545d0SSatish Balay 2958f5f57ec0SBarry Smith Not available from Fortran 2959f5f57ec0SBarry Smith 29601f817a21SBarry Smith Options Database: 2961063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 29621f817a21SBarry Smith @*/ 2963dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2964dff31646SBarry Smith { 2965dff31646SBarry Smith size_t len; 2966dff31646SBarry Smith char *vstring; 2967dff31646SBarry Smith PetscErrorCode ierr; 2968dff31646SBarry Smith 29691f817a21SBarry Smith PetscFunctionBegin; 29708d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2971dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 297235005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2973dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2974dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29751f817a21SBarry Smith PetscFunctionReturn(0); 2976dff31646SBarry Smith } 2977dff31646SBarry Smith 2978b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2979fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2980fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2981f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2982fe278a28SBarry Smith 2983f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2984f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2985b967cddfSBarry Smith 29869f4d3c52SBarry Smith PETSC_EXTERN PetscErrorCode PetscGlobusGetTransfers(MPI_Comm,const char[],char[],size_t); 29879f4d3c52SBarry Smith 298804102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2989763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2990dff31646SBarry Smith 299168e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29925dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2993d382aafbSBarry Smith 2994b2566f29SBarry Smith 2995b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2996b2566f29SBarry Smith /* 2997b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2998b2566f29SBarry Smith */ 29998f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 300077a5e07dSBarry Smith 300177a5e07dSBarry Smith /*MC 300277a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 300377a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 300477a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 300577a5e07dSBarry Smith 300677a5e07dSBarry Smith Collective on MPI_Comm 300777a5e07dSBarry Smith 300877a5e07dSBarry Smith Synopsis: 300977a5e07dSBarry Smith #include <petscsys.h> 301077a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 301177a5e07dSBarry Smith 301277a5e07dSBarry Smith Input Parameters: 301377a5e07dSBarry Smith + indata - pointer to the input data to be reduced 301477a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 301577a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 301677a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 301777a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 301877a5e07dSBarry Smith 301977a5e07dSBarry Smith Output Parameter: 302077a5e07dSBarry Smith . outdata - the reduced values 302177a5e07dSBarry Smith 3022e28ce29aSPatrick Sanan Notes: 3023e28ce29aSPatrick Sanan In optimized mode this directly calls MPI_Allreduce() 302477a5e07dSBarry Smith 302577a5e07dSBarry Smith Level: developer 302677a5e07dSBarry Smith 302777a5e07dSBarry Smith .seealso: MPI_Allreduce() 302877a5e07dSBarry Smith M*/ 3029fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 3030b2566f29SBarry Smith #else 3031b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 3032b2566f29SBarry Smith #endif 3033b2566f29SBarry Smith 30346f7079ddSSatish Balay #if defined(PETSC_HAVE_MPI_WIN_CREATE_FEATURE) 30358198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_allocate_shared(MPI_Aint,PetscMPIInt,MPI_Info,MPI_Comm,void*,MPI_Win*); 30368198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_shared_query(MPI_Win,PetscMPIInt,MPI_Aint*,PetscMPIInt*,void*); 30372f065d89SBarry Smith #endif 30388198064fSBarry Smith 303912801b39SBarry Smith /* 304012801b39SBarry Smith Returned from PETSc functions that are called from MPI, such as related to attributes 304112801b39SBarry Smith */ 304212801b39SBarry Smith PETSC_EXTERN PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 304312801b39SBarry Smith 3044d382aafbSBarry Smith #endif 3045