1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240fab38c73SJed Brown 241d382aafbSBarry Smith /*MC 242d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2433b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 244d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 245d382aafbSBarry Smith 246d382aafbSBarry Smith Level: intermediate 247d382aafbSBarry Smith 248d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 249d382aafbSBarry Smith M*/ 250bd84f1cfSSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 251bafee8b4SSatish Balay typedef int64_t PetscInt64; 252bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 253fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 254bafee8b4SSatish Balay typedef long long PetscInt64; 255bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 256f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 257bafee8b4SSatish Balay typedef __int64 PetscInt64; 258bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 259236ed0a3SSatish Balay #else 260bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 261236ed0a3SSatish Balay #endif 262d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 263bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 264bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 265d382aafbSBarry Smith #else 266d382aafbSBarry Smith typedef int PetscInt; 267d382aafbSBarry Smith #define MPIU_INT MPI_INT 268d382aafbSBarry Smith #endif 269d382aafbSBarry Smith 270702bc34aSSatish Balay /*MC 271702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 272702bc34aSSatish Balay 273702bc34aSSatish Balay Level: intermediate 274702bc34aSSatish Balay 275702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 276702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 277702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 278702bc34aSSatish Balay 279c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2802981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 281702bc34aSSatish Balay 2822981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 283702bc34aSSatish Balay if you run ./configure with the option 284702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2852981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2862981ebdbSBarry Smith 2872981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2882981ebdbSBarry Smith 2892981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 290702bc34aSSatish Balay 291702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 292702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 293702bc34aSSatish Balay 2941cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 295702bc34aSSatish Balay 296702bc34aSSatish Balay M*/ 297702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 298bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 299702bc34aSSatish Balay #else 300702bc34aSSatish Balay typedef int PetscBLASInt; 301702bc34aSSatish Balay #endif 302702bc34aSSatish Balay 30358b60935SBarry Smith /*EC 30458b60935SBarry Smith 3052981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 30658b60935SBarry Smith 30758b60935SBarry Smith Level: advanced 30858b60935SBarry Smith 30958b60935SBarry Smith .seealso: PetscObjectSetPrecision() 31058b60935SBarry Smith E*/ 31158b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 312014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 31358b60935SBarry Smith 314503cfb0cSBarry Smith /* 315503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 316503cfb0cSBarry Smith */ 317d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 318adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 319d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 320adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 321d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 322adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 323d382aafbSBarry Smith #else 324d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 325d382aafbSBarry Smith #endif 326d382aafbSBarry Smith 327d382aafbSBarry Smith /* 328d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 329d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 330d382aafbSBarry Smith */ 331014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 332d382aafbSBarry Smith 333d382aafbSBarry Smith /* 334d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 335d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 336d382aafbSBarry Smith */ 337014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 338d382aafbSBarry Smith 339d382aafbSBarry Smith /*MC 340d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 341d382aafbSBarry Smith 342d382aafbSBarry Smith Synopsis: 343aaa7dc30SBarry Smith #include <petscsys.h> 344ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 345d382aafbSBarry Smith 346eca87e8dSBarry Smith Not Collective 347eca87e8dSBarry Smith 348d382aafbSBarry Smith Input Parameters: 349d382aafbSBarry Smith . cond - condition or expression 350d382aafbSBarry Smith 351d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 352d382aafbSBarry Smith branch is unlikely. 353d382aafbSBarry Smith 354d382aafbSBarry Smith Level: advanced 355d382aafbSBarry Smith 356d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 357d382aafbSBarry Smith M*/ 358d382aafbSBarry Smith 359d382aafbSBarry Smith /*MC 360d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 361d382aafbSBarry Smith 362d382aafbSBarry Smith Synopsis: 363aaa7dc30SBarry Smith #include <petscsys.h> 364ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 365d382aafbSBarry Smith 366eca87e8dSBarry Smith Not Collective 367eca87e8dSBarry Smith 368d382aafbSBarry Smith Input Parameters: 369d382aafbSBarry Smith . cond - condition or expression 370d382aafbSBarry Smith 371d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 372d382aafbSBarry Smith branch is likely. 373d382aafbSBarry Smith 374d382aafbSBarry Smith Level: advanced 375d382aafbSBarry Smith 376d382aafbSBarry Smith .seealso: PetscUnlikely() 377d382aafbSBarry Smith M*/ 378d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 379d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 380d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 381d382aafbSBarry Smith #else 382cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 383cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 384d382aafbSBarry Smith #endif 385d382aafbSBarry Smith 386d382aafbSBarry Smith /* 387d382aafbSBarry Smith Declare extern C stuff after including external header files 388d382aafbSBarry Smith */ 389d382aafbSBarry Smith 390d382aafbSBarry Smith 391d382aafbSBarry Smith /* 392d382aafbSBarry Smith Basic PETSc constants 393d382aafbSBarry Smith */ 394d382aafbSBarry Smith 395d382aafbSBarry Smith /*E 396ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 397d382aafbSBarry Smith 398d382aafbSBarry Smith Level: beginner 399d382aafbSBarry Smith 400ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 40134e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 40234e82e7dSBarry Smith 4031cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 404d382aafbSBarry Smith E*/ 405ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4066a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4075a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 40870b3c8c7SBarry Smith 4098b49ba18SBarry Smith /* 4108b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4118b49ba18SBarry Smith */ 4128b49ba18SBarry Smith #include <petscmath.h> 4138b49ba18SBarry Smith 41470b3c8c7SBarry Smith /*E 41570b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 41670b3c8c7SBarry Smith 41770b3c8c7SBarry Smith Level: beginner 41870b3c8c7SBarry Smith 41970b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42070b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 42170b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 42270b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 42370b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 42470b3c8c7SBarry Smith 42570b3c8c7SBarry Smith E*/ 42670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4276a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 428d382aafbSBarry Smith 429d382aafbSBarry Smith /*MC 430ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 431d382aafbSBarry Smith 432d382aafbSBarry Smith Level: beginner 433d382aafbSBarry Smith 434d382aafbSBarry Smith Note: Zero integer 435d382aafbSBarry Smith 436ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 437d382aafbSBarry Smith M*/ 438d382aafbSBarry Smith 439d382aafbSBarry Smith /*MC 440ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 441d382aafbSBarry Smith 442d382aafbSBarry Smith Level: beginner 443d382aafbSBarry Smith 444d382aafbSBarry Smith Note: Nonzero integer 445d382aafbSBarry Smith 446ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 447d382aafbSBarry Smith M*/ 448d382aafbSBarry Smith 449d382aafbSBarry Smith /*MC 4500298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 451d382aafbSBarry Smith 452d382aafbSBarry Smith Level: beginner 453d382aafbSBarry Smith 454d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 455d382aafbSBarry Smith some default 456d382aafbSBarry Smith 457d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 458503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 459d382aafbSBarry Smith 460d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 461d382aafbSBarry Smith 462d382aafbSBarry Smith M*/ 4633bcbec90SJed Brown #define PETSC_NULL NULL 464d382aafbSBarry Smith 465d382aafbSBarry Smith /*MC 4660298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 467d382aafbSBarry Smith 468d382aafbSBarry Smith Level: beginner 469d382aafbSBarry Smith 470d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 471d382aafbSBarry Smith some default 472d382aafbSBarry Smith 473d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 474d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 475d382aafbSBarry Smith 476d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 477d382aafbSBarry Smith 478d382aafbSBarry Smith M*/ 4790298fd71SBarry Smith #define PETSC_IGNORE NULL 480d382aafbSBarry Smith 481d382aafbSBarry Smith /*MC 482557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 483557d4da8SBarry Smith where you wish PETSc to use the default. 484557d4da8SBarry Smith 485557d4da8SBarry Smith Level: beginner 486557d4da8SBarry Smith 487557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 488557d4da8SBarry Smith 489557d4da8SBarry Smith M*/ 490557d4da8SBarry Smith #define PETSC_DECIDE -1 491557d4da8SBarry Smith 492557d4da8SBarry Smith /*MC 493d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 494d382aafbSBarry Smith where you wish PETSc to compute the required value. 495d382aafbSBarry Smith 496d382aafbSBarry Smith Level: beginner 497d382aafbSBarry Smith 498557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 499557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 500557d4da8SBarry Smith 5010298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 502d382aafbSBarry Smith 503d382aafbSBarry Smith M*/ 504d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 505d382aafbSBarry Smith 506d382aafbSBarry Smith /*MC 507557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 508557d4da8SBarry Smith where you wish PETSc to use the default. 509557d4da8SBarry Smith 510557d4da8SBarry Smith Level: beginner 511557d4da8SBarry Smith 5122d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 513557d4da8SBarry Smith 5140298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 515557d4da8SBarry Smith 516557d4da8SBarry Smith M*/ 517557d4da8SBarry Smith #define PETSC_DEFAULT -2 518557d4da8SBarry Smith 519557d4da8SBarry Smith /*MC 520d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 521d382aafbSBarry Smith all the processs that PETSc knows about. 522d382aafbSBarry Smith 523d382aafbSBarry Smith Level: beginner 524d382aafbSBarry Smith 525d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 526d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 527d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 528a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 529a990b902SBarry Smith 530a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 531a990b902SBarry Smith is called because it may not have a valid value yet. 532d382aafbSBarry Smith 533d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 534d382aafbSBarry Smith 535d382aafbSBarry Smith M*/ 536014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 537d382aafbSBarry Smith 538d382aafbSBarry Smith /*MC 539503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 540d382aafbSBarry Smith 541d382aafbSBarry Smith Level: beginner 542d382aafbSBarry Smith 543a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 544a990b902SBarry Smith 545d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 546d382aafbSBarry Smith 547d382aafbSBarry Smith M*/ 548d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 549d382aafbSBarry Smith 550d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 551014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 552014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 553014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5544cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 55582f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 556d382aafbSBarry Smith 557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 558014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 560d382aafbSBarry Smith 561d382aafbSBarry Smith /*MC 562*95dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 563d382aafbSBarry Smith 564eca87e8dSBarry Smith Synopsis: 565aaa7dc30SBarry Smith #include <petscsys.h> 566eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 567eca87e8dSBarry Smith 568eca87e8dSBarry Smith Not Collective 569eca87e8dSBarry Smith 570d382aafbSBarry Smith Input Parameter: 571d382aafbSBarry Smith . m - number of bytes to allocate 572d382aafbSBarry Smith 573d382aafbSBarry Smith Output Parameter: 574d382aafbSBarry Smith . result - memory allocated 575d382aafbSBarry Smith 576d382aafbSBarry Smith Level: beginner 577d382aafbSBarry Smith 57849d7da52SJed Brown Notes: 57949d7da52SJed Brown Memory is always allocated at least double aligned 580d382aafbSBarry Smith 58149d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 582d382aafbSBarry Smith 583d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 584d382aafbSBarry Smith 585d382aafbSBarry Smith Concepts: memory allocation 586d382aafbSBarry Smith 587d382aafbSBarry Smith M*/ 58849d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 589d382aafbSBarry Smith 590d382aafbSBarry Smith /*MC 591503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 592d382aafbSBarry Smith 593d382aafbSBarry Smith Synopsis: 594aaa7dc30SBarry Smith #include <petscsys.h> 595d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 596d382aafbSBarry Smith 597eca87e8dSBarry Smith Not Collective 598eca87e8dSBarry Smith 599eca87e8dSBarry Smith Input Parameters: 600eca87e8dSBarry Smith . addr - address to align (any pointer type) 601eca87e8dSBarry Smith 602d382aafbSBarry Smith Level: developer 603d382aafbSBarry Smith 604d382aafbSBarry Smith .seealso: PetscMallocAlign() 605d382aafbSBarry Smith 606d382aafbSBarry Smith Concepts: memory allocation 607d382aafbSBarry Smith M*/ 608d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 609d382aafbSBarry Smith 610d382aafbSBarry Smith /*MC 611785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 612d382aafbSBarry Smith 613eca87e8dSBarry Smith Synopsis: 614aaa7dc30SBarry Smith #include <petscsys.h> 615785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 616785e854fSJed Brown 617785e854fSJed Brown Not Collective 618785e854fSJed Brown 619785e854fSJed Brown Input Parameter: 620785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 621785e854fSJed Brown 622785e854fSJed Brown Output Parameter: 623785e854fSJed Brown . r1 - memory allocated in first chunk 624785e854fSJed Brown 625785e854fSJed Brown Level: developer 626785e854fSJed Brown 6271795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 628785e854fSJed Brown 629785e854fSJed Brown Concepts: memory allocation 630785e854fSJed Brown 631785e854fSJed Brown M*/ 632f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 633785e854fSJed Brown 634785e854fSJed Brown /*MC 6351795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6361795a4d1SJed Brown 6371795a4d1SJed Brown Synopsis: 638aaa7dc30SBarry Smith #include <petscsys.h> 6391795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6401795a4d1SJed Brown 6411795a4d1SJed Brown Not Collective 6421795a4d1SJed Brown 6431795a4d1SJed Brown Input Parameter: 6441795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6451795a4d1SJed Brown 6461795a4d1SJed Brown Output Parameter: 6471795a4d1SJed Brown . r1 - memory allocated in first chunk 6481795a4d1SJed Brown 6491795a4d1SJed Brown Level: developer 6501795a4d1SJed Brown 6511795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6521795a4d1SJed Brown 6531795a4d1SJed Brown Concepts: memory allocation 6541795a4d1SJed Brown 6551795a4d1SJed Brown M*/ 6561795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6571795a4d1SJed Brown 6581795a4d1SJed Brown /*MC 659dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 660d382aafbSBarry Smith 661eca87e8dSBarry Smith Synopsis: 662aaa7dc30SBarry Smith #include <petscsys.h> 663dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 664eca87e8dSBarry Smith 665eca87e8dSBarry Smith Not Collective 666eca87e8dSBarry Smith 667d382aafbSBarry Smith Input Parameter: 668d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 669dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 670d382aafbSBarry Smith 671d382aafbSBarry Smith Output Parameter: 672d382aafbSBarry Smith + r1 - memory allocated in first chunk 673d382aafbSBarry Smith - r2 - memory allocated in second chunk 674d382aafbSBarry Smith 675d382aafbSBarry Smith Level: developer 676d382aafbSBarry Smith 6771795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 678d382aafbSBarry Smith 679d382aafbSBarry Smith Concepts: memory allocation 680d382aafbSBarry Smith 681d382aafbSBarry Smith M*/ 68220a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6831d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 684d382aafbSBarry Smith #else 685ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 686ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6873589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 688d382aafbSBarry Smith #endif 689d382aafbSBarry Smith 690d382aafbSBarry Smith /*MC 6911795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 692d382aafbSBarry Smith 693eca87e8dSBarry Smith Synopsis: 694aaa7dc30SBarry Smith #include <petscsys.h> 6951795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 696eca87e8dSBarry Smith 697eca87e8dSBarry Smith Not Collective 698eca87e8dSBarry Smith 699d382aafbSBarry Smith Input Parameter: 700d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7011795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7021795a4d1SJed Brown 7031795a4d1SJed Brown Output Parameter: 7041795a4d1SJed Brown + r1 - memory allocated in first chunk 7051795a4d1SJed Brown - r2 - memory allocated in second chunk 7061795a4d1SJed Brown 7071795a4d1SJed Brown Level: developer 7081795a4d1SJed Brown 7091795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7101795a4d1SJed Brown 7111795a4d1SJed Brown Concepts: memory allocation 7121795a4d1SJed Brown M*/ 7131795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7141795a4d1SJed Brown 7151795a4d1SJed Brown /*MC 716dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 717d382aafbSBarry Smith 718d382aafbSBarry Smith Synopsis: 719aaa7dc30SBarry Smith #include <petscsys.h> 720dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 721d382aafbSBarry Smith 722d382aafbSBarry Smith Not Collective 723d382aafbSBarry Smith 724d382aafbSBarry Smith Input Parameter: 725d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 726d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 727dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 728d382aafbSBarry Smith 729d382aafbSBarry Smith Output Parameter: 730d382aafbSBarry Smith + r1 - memory allocated in first chunk 731d382aafbSBarry Smith . r2 - memory allocated in second chunk 732d382aafbSBarry Smith - r3 - memory allocated in third chunk 733d382aafbSBarry Smith 734d382aafbSBarry Smith Level: developer 735d382aafbSBarry Smith 7361795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 737d382aafbSBarry Smith 738d382aafbSBarry Smith Concepts: memory allocation 739d382aafbSBarry Smith 740d382aafbSBarry Smith M*/ 74120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7421d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 743d382aafbSBarry Smith #else 744ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 745278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7463589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 747d382aafbSBarry Smith #endif 748d382aafbSBarry Smith 749d382aafbSBarry Smith /*MC 7501795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 751d382aafbSBarry Smith 752eca87e8dSBarry Smith Synopsis: 753aaa7dc30SBarry Smith #include <petscsys.h> 7541795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 755eca87e8dSBarry Smith 756eca87e8dSBarry Smith Not Collective 757eca87e8dSBarry Smith 758d382aafbSBarry Smith Input Parameter: 759d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 760d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7611795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7621795a4d1SJed Brown 7631795a4d1SJed Brown Output Parameter: 7641795a4d1SJed Brown + r1 - memory allocated in first chunk 7651795a4d1SJed Brown . r2 - memory allocated in second chunk 7661795a4d1SJed Brown - r3 - memory allocated in third chunk 7671795a4d1SJed Brown 7681795a4d1SJed Brown Level: developer 7691795a4d1SJed Brown 7701795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7711795a4d1SJed Brown 7721795a4d1SJed Brown Concepts: memory allocation 7731795a4d1SJed Brown M*/ 7741795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7751795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7761795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7771795a4d1SJed Brown 7781795a4d1SJed Brown /*MC 779dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 780d382aafbSBarry Smith 781d382aafbSBarry Smith Synopsis: 782aaa7dc30SBarry Smith #include <petscsys.h> 783dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 784d382aafbSBarry Smith 785d382aafbSBarry Smith Not Collective 786d382aafbSBarry Smith 787d382aafbSBarry Smith Input Parameter: 788d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 789d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 790d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 791dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 792d382aafbSBarry Smith 793d382aafbSBarry Smith Output Parameter: 794d382aafbSBarry Smith + r1 - memory allocated in first chunk 795d382aafbSBarry Smith . r2 - memory allocated in second chunk 796d382aafbSBarry Smith . r3 - memory allocated in third chunk 797d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 798d382aafbSBarry Smith 799d382aafbSBarry Smith Level: developer 800d382aafbSBarry Smith 8011795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 802d382aafbSBarry Smith 803d382aafbSBarry Smith Concepts: memory allocation 804d382aafbSBarry Smith 805d382aafbSBarry Smith M*/ 80620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8071d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 808d382aafbSBarry Smith #else 809dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 810ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 811278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8123589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 813d382aafbSBarry Smith #endif 814d382aafbSBarry Smith 815d382aafbSBarry Smith /*MC 8161795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 817d382aafbSBarry Smith 818eca87e8dSBarry Smith Synopsis: 819aaa7dc30SBarry Smith #include <petscsys.h> 8201795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 821eca87e8dSBarry Smith 822eca87e8dSBarry Smith Not Collective 823eca87e8dSBarry Smith 824d382aafbSBarry Smith Input Parameter: 825d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 826d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 827d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8281795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8291795a4d1SJed Brown 8301795a4d1SJed Brown Output Parameter: 8311795a4d1SJed Brown + r1 - memory allocated in first chunk 8321795a4d1SJed Brown . r2 - memory allocated in second chunk 8331795a4d1SJed Brown . r3 - memory allocated in third chunk 8341795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8351795a4d1SJed Brown 8361795a4d1SJed Brown Level: developer 8371795a4d1SJed Brown 8381795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8391795a4d1SJed Brown 8401795a4d1SJed Brown Concepts: memory allocation 8411795a4d1SJed Brown 8421795a4d1SJed Brown M*/ 8431795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8441795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8451795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8461795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8471795a4d1SJed Brown 8481795a4d1SJed Brown /*MC 849dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 850d382aafbSBarry Smith 851d382aafbSBarry Smith Synopsis: 852aaa7dc30SBarry Smith #include <petscsys.h> 853dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 854d382aafbSBarry Smith 855d382aafbSBarry Smith Not Collective 856d382aafbSBarry Smith 857d382aafbSBarry Smith Input Parameter: 858d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 859d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 860d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 861d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 862dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 863d382aafbSBarry Smith 864d382aafbSBarry Smith Output Parameter: 865d382aafbSBarry Smith + r1 - memory allocated in first chunk 866d382aafbSBarry Smith . r2 - memory allocated in second chunk 867d382aafbSBarry Smith . r3 - memory allocated in third chunk 868d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 869d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 870d382aafbSBarry Smith 871d382aafbSBarry Smith Level: developer 872d382aafbSBarry Smith 8731795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 874d382aafbSBarry Smith 875d382aafbSBarry Smith Concepts: memory allocation 876d382aafbSBarry Smith 877d382aafbSBarry Smith M*/ 87820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8791d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 880d382aafbSBarry Smith #else 881dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 882ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 883278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8843589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 885d382aafbSBarry Smith #endif 886d382aafbSBarry Smith 887d382aafbSBarry Smith /*MC 8881795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 889d382aafbSBarry Smith 890eca87e8dSBarry Smith Synopsis: 891aaa7dc30SBarry Smith #include <petscsys.h> 8921795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 893eca87e8dSBarry Smith 894eca87e8dSBarry Smith Not Collective 895eca87e8dSBarry Smith 896d382aafbSBarry Smith Input Parameter: 897d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 898d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 899d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 900d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9011795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9021795a4d1SJed Brown 9031795a4d1SJed Brown Output Parameter: 9041795a4d1SJed Brown + r1 - memory allocated in first chunk 9051795a4d1SJed Brown . r2 - memory allocated in second chunk 9061795a4d1SJed Brown . r3 - memory allocated in third chunk 9071795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9081795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9091795a4d1SJed Brown 9101795a4d1SJed Brown Level: developer 9111795a4d1SJed Brown 9121795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9131795a4d1SJed Brown 9141795a4d1SJed Brown Concepts: memory allocation 9151795a4d1SJed Brown 9161795a4d1SJed Brown M*/ 9171795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9181795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9191795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9201795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 921d382aafbSBarry Smith 922d382aafbSBarry Smith /*MC 923dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 924d382aafbSBarry Smith 925d382aafbSBarry Smith Synopsis: 926aaa7dc30SBarry Smith #include <petscsys.h> 927dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 928d382aafbSBarry Smith 929d382aafbSBarry Smith Not Collective 930d382aafbSBarry Smith 931d382aafbSBarry Smith Input Parameter: 932d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 933d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 934d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 935d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 936d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 937dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 938d382aafbSBarry Smith 939d382aafbSBarry Smith Output Parameter: 940d382aafbSBarry Smith + r1 - memory allocated in first chunk 941d382aafbSBarry Smith . r2 - memory allocated in second chunk 942d382aafbSBarry Smith . r3 - memory allocated in third chunk 943d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 944d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 945d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 946d382aafbSBarry Smith 947d382aafbSBarry Smith Level: developer 948d382aafbSBarry Smith 9491795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 950d382aafbSBarry Smith 951d382aafbSBarry Smith Concepts: memory allocation 952d382aafbSBarry Smith 953d382aafbSBarry Smith M*/ 95420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9551d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 956d382aafbSBarry Smith #else 957dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 958ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 959278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9603589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 961d382aafbSBarry Smith #endif 962d382aafbSBarry Smith 963d382aafbSBarry Smith /*MC 9641795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 965d382aafbSBarry Smith 966eca87e8dSBarry Smith Synopsis: 967aaa7dc30SBarry Smith #include <petscsys.h> 9681795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 969eca87e8dSBarry Smith 970eca87e8dSBarry Smith Not Collective 971eca87e8dSBarry Smith 972d382aafbSBarry Smith Input Parameter: 973d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 974d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 975d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 976d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 977d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9781795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9791795a4d1SJed Brown 9801795a4d1SJed Brown Output Parameter: 9811795a4d1SJed Brown + r1 - memory allocated in first chunk 9821795a4d1SJed Brown . r2 - memory allocated in second chunk 9831795a4d1SJed Brown . r3 - memory allocated in third chunk 9841795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9851795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9861795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9871795a4d1SJed Brown 9881795a4d1SJed Brown Level: developer 9891795a4d1SJed Brown 9901795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9911795a4d1SJed Brown 9921795a4d1SJed Brown Concepts: memory allocation 9931795a4d1SJed Brown M*/ 9941795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9951795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9961795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9971795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9981795a4d1SJed Brown 9991795a4d1SJed Brown /*MC 1000dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1001d382aafbSBarry Smith 1002d382aafbSBarry Smith Synopsis: 1003aaa7dc30SBarry Smith #include <petscsys.h> 1004dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1005d382aafbSBarry Smith 1006d382aafbSBarry Smith Not Collective 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith Input Parameter: 1009d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1010d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1011d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1012d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1013d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1014d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1015dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1016d382aafbSBarry Smith 1017d382aafbSBarry Smith Output Parameter: 1018d382aafbSBarry Smith + r1 - memory allocated in first chunk 1019d382aafbSBarry Smith . r2 - memory allocated in second chunk 1020d382aafbSBarry Smith . r3 - memory allocated in third chunk 1021d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1022d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1023d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1024eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1025d382aafbSBarry Smith 1026d382aafbSBarry Smith Level: developer 1027d382aafbSBarry Smith 10281795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1029d382aafbSBarry Smith 1030d382aafbSBarry Smith Concepts: memory allocation 1031d382aafbSBarry Smith 1032d382aafbSBarry Smith M*/ 103320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10341d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1035d382aafbSBarry Smith #else 1036dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1037ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1038278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10393589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1040d382aafbSBarry Smith #endif 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith /*MC 10431795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10441795a4d1SJed Brown 10451795a4d1SJed Brown Synopsis: 1046aaa7dc30SBarry Smith #include <petscsys.h> 10471795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10481795a4d1SJed Brown 10491795a4d1SJed Brown Not Collective 10501795a4d1SJed Brown 10511795a4d1SJed Brown Input Parameter: 10521795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10531795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10541795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10551795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10561795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10571795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10581795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10591795a4d1SJed Brown 10601795a4d1SJed Brown Output Parameter: 10611795a4d1SJed Brown + r1 - memory allocated in first chunk 10621795a4d1SJed Brown . r2 - memory allocated in second chunk 10631795a4d1SJed Brown . r3 - memory allocated in third chunk 10641795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10651795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10661795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10671795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10681795a4d1SJed Brown 10691795a4d1SJed Brown Level: developer 10701795a4d1SJed Brown 10711795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10721795a4d1SJed Brown 10731795a4d1SJed Brown Concepts: memory allocation 10741795a4d1SJed Brown M*/ 10751795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10767ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10771795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10781795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10797ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10801795a4d1SJed Brown 10811795a4d1SJed Brown /*MC 1082503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1083d382aafbSBarry Smith 1084eca87e8dSBarry Smith Synopsis: 1085aaa7dc30SBarry Smith #include <petscsys.h> 1086b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1087eca87e8dSBarry Smith 1088eca87e8dSBarry Smith Not Collective 1089eca87e8dSBarry Smith 1090d382aafbSBarry Smith Output Parameter: 1091b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1092d382aafbSBarry Smith 1093d382aafbSBarry Smith Level: beginner 1094d382aafbSBarry Smith 1095ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1096d382aafbSBarry Smith 1097d382aafbSBarry Smith Concepts: memory allocation 1098d382aafbSBarry Smith 1099d382aafbSBarry Smith M*/ 1100b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1101ad0619ddSBarry Smith 1102ad0619ddSBarry Smith /*MC 1103b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1104ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1105ad0619ddSBarry Smith 1106ad0619ddSBarry Smith Synopsis: 1107aaa7dc30SBarry Smith #include <petscsys.h> 1108b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1109ad0619ddSBarry Smith 1110ad0619ddSBarry Smith Not Collective 1111ad0619ddSBarry Smith 1112ad0619ddSBarry Smith Input Parameter: 1113b00a9115SJed Brown . obj - object memory is logged to 1114ad0619ddSBarry Smith 1115ad0619ddSBarry Smith Output Parameter: 1116b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1117ad0619ddSBarry Smith 1118ad0619ddSBarry Smith Level: developer 1119ad0619ddSBarry Smith 1120ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1121ad0619ddSBarry Smith 1122ad0619ddSBarry Smith Concepts: memory allocation 1123ad0619ddSBarry Smith 1124ad0619ddSBarry Smith M*/ 1125d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1126d382aafbSBarry Smith 1127d382aafbSBarry Smith /*MC 1128d382aafbSBarry Smith PetscFree - Frees memory 1129d382aafbSBarry Smith 1130eca87e8dSBarry Smith Synopsis: 1131aaa7dc30SBarry Smith #include <petscsys.h> 1132eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1133eca87e8dSBarry Smith 1134eca87e8dSBarry Smith Not Collective 1135eca87e8dSBarry Smith 1136d382aafbSBarry Smith Input Parameter: 1137d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1138d382aafbSBarry Smith 1139d382aafbSBarry Smith Level: beginner 1140d382aafbSBarry Smith 114149d7da52SJed Brown Notes: 114249d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 114349d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1146d382aafbSBarry Smith 1147d382aafbSBarry Smith Concepts: memory allocation 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith M*/ 115049d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1151d382aafbSBarry Smith 1152d382aafbSBarry Smith /*MC 1153d382aafbSBarry Smith PetscFreeVoid - Frees memory 1154d382aafbSBarry Smith 1155d382aafbSBarry Smith Synopsis: 1156aaa7dc30SBarry Smith #include <petscsys.h> 1157d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1158d382aafbSBarry Smith 1159eca87e8dSBarry Smith Not Collective 1160eca87e8dSBarry Smith 1161eca87e8dSBarry Smith Input Parameter: 1162eca87e8dSBarry Smith . memory - memory to free 1163eca87e8dSBarry Smith 1164d382aafbSBarry Smith Level: beginner 1165d382aafbSBarry Smith 1166d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1167d382aafbSBarry Smith 1168d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1169d382aafbSBarry Smith 1170d382aafbSBarry Smith Concepts: memory allocation 1171d382aafbSBarry Smith 1172d382aafbSBarry Smith M*/ 1173efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1174d382aafbSBarry Smith 1175d382aafbSBarry Smith 1176d382aafbSBarry Smith /*MC 1177d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1178d382aafbSBarry Smith 1179eca87e8dSBarry Smith Synopsis: 1180aaa7dc30SBarry Smith #include <petscsys.h> 1181eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1182eca87e8dSBarry Smith 1183eca87e8dSBarry Smith Not Collective 1184eca87e8dSBarry Smith 1185d382aafbSBarry Smith Input Parameter: 1186d382aafbSBarry Smith + memory1 - memory to free 1187d382aafbSBarry Smith - memory2 - 2nd memory to free 1188d382aafbSBarry Smith 1189d382aafbSBarry Smith Level: developer 1190d382aafbSBarry Smith 1191d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1194d382aafbSBarry Smith 1195d382aafbSBarry Smith Concepts: memory allocation 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith M*/ 1198b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1199d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1200d382aafbSBarry Smith #else 1201e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1202d382aafbSBarry Smith #endif 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith /*MC 1205d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1206d382aafbSBarry Smith 1207eca87e8dSBarry Smith Synopsis: 1208aaa7dc30SBarry Smith #include <petscsys.h> 1209eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1210eca87e8dSBarry Smith 1211eca87e8dSBarry Smith Not Collective 1212eca87e8dSBarry Smith 1213d382aafbSBarry Smith Input Parameter: 1214d382aafbSBarry Smith + memory1 - memory to free 1215d382aafbSBarry Smith . memory2 - 2nd memory to free 1216d382aafbSBarry Smith - memory3 - 3rd memory to free 1217d382aafbSBarry Smith 1218d382aafbSBarry Smith Level: developer 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith Concepts: memory allocation 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith M*/ 1227b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1228d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1229d382aafbSBarry Smith #else 1230e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1231d382aafbSBarry Smith #endif 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith /*MC 1234d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1235d382aafbSBarry Smith 1236eca87e8dSBarry Smith Synopsis: 1237aaa7dc30SBarry Smith #include <petscsys.h> 1238eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1239eca87e8dSBarry Smith 1240eca87e8dSBarry Smith Not Collective 1241eca87e8dSBarry Smith 1242d382aafbSBarry Smith Input Parameter: 1243d382aafbSBarry Smith + m1 - memory to free 1244d382aafbSBarry Smith . m2 - 2nd memory to free 1245d382aafbSBarry Smith . m3 - 3rd memory to free 1246d382aafbSBarry Smith - m4 - 4th memory to free 1247d382aafbSBarry Smith 1248d382aafbSBarry Smith Level: developer 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith Concepts: memory allocation 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith M*/ 1257b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1258d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1259d382aafbSBarry Smith #else 1260e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1261d382aafbSBarry Smith #endif 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith /*MC 1264d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1265d382aafbSBarry Smith 1266eca87e8dSBarry Smith Synopsis: 1267aaa7dc30SBarry Smith #include <petscsys.h> 1268eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1269eca87e8dSBarry Smith 1270eca87e8dSBarry Smith Not Collective 1271eca87e8dSBarry Smith 1272d382aafbSBarry Smith Input Parameter: 1273d382aafbSBarry Smith + m1 - memory to free 1274d382aafbSBarry Smith . m2 - 2nd memory to free 1275d382aafbSBarry Smith . m3 - 3rd memory to free 1276d382aafbSBarry Smith . m4 - 4th memory to free 1277d382aafbSBarry Smith - m5 - 5th memory to free 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith Level: developer 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Concepts: memory allocation 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith M*/ 1288b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1289d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1290d382aafbSBarry Smith #else 1291e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1292e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1293d382aafbSBarry Smith #endif 1294d382aafbSBarry Smith 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith /*MC 1297d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1298d382aafbSBarry Smith 1299eca87e8dSBarry Smith Synopsis: 1300aaa7dc30SBarry Smith #include <petscsys.h> 1301eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1302eca87e8dSBarry Smith 1303eca87e8dSBarry Smith Not Collective 1304eca87e8dSBarry Smith 1305d382aafbSBarry Smith Input Parameter: 1306d382aafbSBarry Smith + m1 - memory to free 1307d382aafbSBarry Smith . m2 - 2nd memory to free 1308d382aafbSBarry Smith . m3 - 3rd memory to free 1309d382aafbSBarry Smith . m4 - 4th memory to free 1310d382aafbSBarry Smith . m5 - 5th memory to free 1311d382aafbSBarry Smith - m6 - 6th memory to free 1312d382aafbSBarry Smith 1313d382aafbSBarry Smith 1314d382aafbSBarry Smith Level: developer 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1317d382aafbSBarry Smith 1318d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1319d382aafbSBarry Smith 1320d382aafbSBarry Smith Concepts: memory allocation 1321d382aafbSBarry Smith 1322d382aafbSBarry Smith M*/ 1323b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1324d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1325d382aafbSBarry Smith #else 1326e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1327e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1328e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1329d382aafbSBarry Smith #endif 1330d382aafbSBarry Smith 1331d382aafbSBarry Smith /*MC 1332d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1333d382aafbSBarry Smith 1334eca87e8dSBarry Smith Synopsis: 1335aaa7dc30SBarry Smith #include <petscsys.h> 1336eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1337eca87e8dSBarry Smith 1338eca87e8dSBarry Smith Not Collective 1339eca87e8dSBarry Smith 1340d382aafbSBarry Smith Input Parameter: 1341d382aafbSBarry Smith + m1 - memory to free 1342d382aafbSBarry Smith . m2 - 2nd memory to free 1343d382aafbSBarry Smith . m3 - 3rd memory to free 1344d382aafbSBarry Smith . m4 - 4th memory to free 1345d382aafbSBarry Smith . m5 - 5th memory to free 1346d382aafbSBarry Smith . m6 - 6th memory to free 1347d382aafbSBarry Smith - m7 - 7th memory to free 1348d382aafbSBarry Smith 1349d382aafbSBarry Smith 1350d382aafbSBarry Smith Level: developer 1351d382aafbSBarry Smith 1352d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1353d382aafbSBarry Smith 1354d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1355d382aafbSBarry Smith PetscMalloc7() 1356d382aafbSBarry Smith 1357d382aafbSBarry Smith Concepts: memory allocation 1358d382aafbSBarry Smith 1359d382aafbSBarry Smith M*/ 1360b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1361d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1362d382aafbSBarry Smith #else 1363e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1364e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 136506c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1366e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1367d382aafbSBarry Smith #endif 1368d382aafbSBarry Smith 1369efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1370efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1371efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1373d382aafbSBarry Smith 1374d382aafbSBarry Smith /* 1375a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1376a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1377a5057860SBarry Smith timing etc. 1378a5057860SBarry Smith */ 1379a5057860SBarry Smith typedef double PetscLogDouble; 1380a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1381a5057860SBarry Smith 1382a5057860SBarry Smith /* 138366d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1384d382aafbSBarry Smith */ 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13900acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1391efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1393574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1395d382aafbSBarry Smith 1396d382aafbSBarry Smith /*E 1397d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1398d382aafbSBarry Smith 1399d382aafbSBarry Smith Level: beginner 1400d382aafbSBarry Smith 1401d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1402d382aafbSBarry Smith 1403d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1404d382aafbSBarry Smith PetscDataTypeGetSize() 1405d382aafbSBarry Smith 1406d382aafbSBarry Smith E*/ 1407d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 14087e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 14096a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1410d382aafbSBarry Smith 1411d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1412d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1413d382aafbSBarry Smith #else 1414ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1415d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 141659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141759a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1418d382aafbSBarry Smith #else 1419d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1420d382aafbSBarry Smith #endif 1421d382aafbSBarry Smith #endif 1422ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1423d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 142459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1426d382aafbSBarry Smith #else 1427d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1428d382aafbSBarry Smith #endif 1429d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1430d382aafbSBarry Smith 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14348e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1435d382aafbSBarry Smith 1436d382aafbSBarry Smith /* 1437d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1438d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1439d382aafbSBarry Smith functionality and/or error checking. 1440d382aafbSBarry Smith */ 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1445d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14572f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14622c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 146547340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14666fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14676991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14686991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1470d382aafbSBarry Smith 1471573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1472573b0fb4SBarry Smith 1473d382aafbSBarry Smith /*S 1474d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1475d382aafbSBarry Smith 1476d382aafbSBarry Smith Level: intermediate 1477d382aafbSBarry Smith 1478d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1479d382aafbSBarry Smith S*/ 1480d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1481d382aafbSBarry Smith 1482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1484014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1485d382aafbSBarry Smith 1486a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1487a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1488a53986e1SJed Brown 1489d382aafbSBarry Smith /* 1490d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1491d382aafbSBarry Smith */ 1492367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 14937c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1494014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14952414b3c7SJed Brown #else 14962414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14972414b3c7SJed Brown #endif 14982414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1499014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1500014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1501d9822059SBarry Smith #else 1502d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1503d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1504d9822059SBarry Smith #endif 1505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1506d382aafbSBarry Smith 1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1509eb3f98d2SBarry Smith 1510d382aafbSBarry Smith /*S 1511d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1512d382aafbSBarry Smith 1513d382aafbSBarry Smith Level: beginner 1514d382aafbSBarry Smith 15152981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1516d382aafbSBarry Smith 15172b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1518d382aafbSBarry Smith S*/ 1519d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1520d382aafbSBarry Smith 1521270bf2e7SJed Brown /*MC 1522127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1523127c8a3bSJed Brown 1524127c8a3bSJed Brown Level: developer 1525127c8a3bSJed Brown 1526127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1527127c8a3bSJed Brown 1528127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1529127c8a3bSJed Brown M*/ 1530bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 1531127c8a3bSJed Brown 1532127c8a3bSJed Brown /*MC 1533270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1534270bf2e7SJed Brown 1535270bf2e7SJed Brown Level: developer 1536270bf2e7SJed Brown 1537270bf2e7SJed Brown Notes: 1538270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1539270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1540270bf2e7SJed Brown 15418dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1542270bf2e7SJed Brown M*/ 1543bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 1544270bf2e7SJed Brown 1545d382aafbSBarry Smith /*S 1546140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1547d382aafbSBarry Smith by string name 1548d382aafbSBarry Smith 1549d382aafbSBarry Smith Level: advanced 1550d382aafbSBarry Smith 1551140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1552d382aafbSBarry Smith S*/ 1553140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1554d382aafbSBarry Smith 1555d382aafbSBarry Smith /*E 1556d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1557d382aafbSBarry Smith 1558d382aafbSBarry Smith Level: beginner 1559d382aafbSBarry Smith 15601cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15611cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15621cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15631cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15641cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1565d382aafbSBarry Smith 1566d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1567d382aafbSBarry Smith E*/ 1568d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1569d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1570d6a4318aSJed Brown 1571639ff905SBarry Smith /* 1572639ff905SBarry Smith Defines PETSc error handling. 1573639ff905SBarry Smith */ 1574639ff905SBarry Smith #include <petscerror.h> 1575d382aafbSBarry Smith 15760700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1577014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1578014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1580d382aafbSBarry Smith 1581d382aafbSBarry Smith /* 1582d382aafbSBarry Smith Routines that get memory usage information from the OS 1583d382aafbSBarry Smith */ 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1587b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1588d382aafbSBarry Smith 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1591d382aafbSBarry Smith 1592d382aafbSBarry Smith /* 1593d382aafbSBarry Smith Initialization of PETSc 1594d382aafbSBarry Smith */ 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1605d382aafbSBarry Smith 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1607607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1608d382aafbSBarry Smith 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1613d382aafbSBarry Smith 1614d382aafbSBarry Smith /* 1615d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16162981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1617d382aafbSBarry Smith */ 1618638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1619638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1620638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1621d382aafbSBarry Smith 1622d382aafbSBarry Smith /* 1623d382aafbSBarry Smith Functions that can act on any PETSc object. 1624d382aafbSBarry Smith */ 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1644bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1645bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16480eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16490eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1651d382aafbSBarry Smith 1652665c2dedSJed Brown #include <petscviewertypes.h> 1653639ff905SBarry Smith #include <petscoptions.h> 1654639ff905SBarry Smith 16550633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16560633abcbSJed Brown 1657639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1658c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1659dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1660639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16610005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16620005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1670685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1676d382aafbSBarry Smith 1677e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16787aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1679e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1680e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1681e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1682e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1683e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1684e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1685e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1686e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1687e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 168815681b3cSBarry Smith 1689ec7429eaSBarry Smith #else 16907aab2a10SBarry Smith #define PetscSAWsBlock() 0 1691e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1692e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1693e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1694e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1695e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1696e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1697e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1698e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1699e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 170015681b3cSBarry Smith 1701ec7429eaSBarry Smith #endif 1702b90c6cbeSBarry Smith 17037d5d4d99SBarry Smith typedef void* PetscDLHandle; 1704e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 170582b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 170682b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 170782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17087d5d4d99SBarry Smith 17095fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1710a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17115fe58b6fSBarry Smith #endif 17127eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1713a64a8e02SBarry Smith 1714d382aafbSBarry Smith /*S 1715140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1716d382aafbSBarry Smith 17171d0fab5eSBarry Smith Level: developer 1718d382aafbSBarry Smith 17191d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17201d0fab5eSBarry Smith 1721140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1722d382aafbSBarry Smith S*/ 1723140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1724d382aafbSBarry Smith 1725140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1726140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1727140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1728140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1729140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1730140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1731d382aafbSBarry Smith 1732d382aafbSBarry Smith /* 1733503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1734d382aafbSBarry Smith link libraries that will be loaded as needed. 1735d382aafbSBarry Smith */ 1736a240a19fSJed Brown 1737a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1738a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17401c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17411c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1742140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1743140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1744140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1745140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1746d382aafbSBarry Smith 1747d382aafbSBarry Smith /*S 1748d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1749d382aafbSBarry Smith 1750d382aafbSBarry Smith Level: advanced 1751d382aafbSBarry Smith 1752d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1753d382aafbSBarry Smith S*/ 1754d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1755014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1758014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith /* 1765d382aafbSBarry Smith Useful utility routines 1766d382aafbSBarry Smith */ 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1773d382aafbSBarry Smith 1774503cfb0cSBarry Smith /* 1775ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1776503cfb0cSBarry Smith 1777503cfb0cSBarry Smith Notes: This is useful in cases like 1778503cfb0cSBarry Smith $ int *a; 1779ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17801cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1781503cfb0cSBarry Smith */ 1782d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1783503cfb0cSBarry Smith 1784d382aafbSBarry Smith /*MC 1785d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1786d382aafbSBarry Smith 1787d382aafbSBarry Smith Synopsis: 1788aaa7dc30SBarry Smith #include <petscsys.h> 1789d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1790d382aafbSBarry Smith 1791eca87e8dSBarry Smith Not Collective 1792eca87e8dSBarry Smith 1793d382aafbSBarry Smith Input Parameters: 1794d382aafbSBarry Smith . format - the usual printf() format string 1795d382aafbSBarry Smith 1796d382aafbSBarry Smith Level: developer 1797d382aafbSBarry Smith 1798d382aafbSBarry Smith Fortran Note: 1799d382aafbSBarry Smith This routine is not supported in Fortran. 1800d382aafbSBarry Smith 1801d382aafbSBarry Smith Concepts: help messages^printing 1802d382aafbSBarry Smith Concepts: printing^help messages 1803d382aafbSBarry Smith 1804d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1805d382aafbSBarry Smith M*/ 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1807d382aafbSBarry Smith 1808fcfd50ebSBarry Smith /* 1809fcfd50ebSBarry Smith Defines PETSc profiling. 1810fcfd50ebSBarry Smith */ 18112c8e378dSBarry Smith #include <petsclog.h> 1812fcfd50ebSBarry Smith 1813fcfd50ebSBarry Smith /* 1814fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1815fcfd50ebSBarry Smith */ 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1823fcfd50ebSBarry Smith 1824fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1825fcfd50ebSBarry Smith #include <stdarg.h> 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1829fcfd50ebSBarry Smith 1830fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1832fcfd50ebSBarry Smith #endif 1833fcfd50ebSBarry Smith 1834f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1835f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1836f1d7fe2eSBarry Smith #endif 1837f1d7fe2eSBarry Smith 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1841d382aafbSBarry Smith 1842d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 184496a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 184574ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1846d382aafbSBarry Smith #endif 1847d382aafbSBarry Smith 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18500ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1855d382aafbSBarry Smith 1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1857d382aafbSBarry Smith 1858d382aafbSBarry Smith /*S 1859d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith Level: advanced 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1864d382aafbSBarry Smith S*/ 1865014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1866d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1870014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1871014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith /* 1874d382aafbSBarry Smith For use in debuggers 1875d382aafbSBarry Smith */ 1876014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1877014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1881d382aafbSBarry Smith 1882a663daf8SBarry Smith #include <stddef.h> 1883a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1884d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1885d382aafbSBarry Smith #include <stdlib.h> 1886d382aafbSBarry Smith #endif 18876c7e564aSBarry Smith 18884a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1889d382aafbSBarry Smith #include <xmmintrin.h> 1890d382aafbSBarry Smith #endif 1891d382aafbSBarry Smith 1892fcfd50ebSBarry Smith #undef __FUNCT__ 1893fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1894d382aafbSBarry Smith /*@C 1895d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1896d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1897d382aafbSBarry Smith PetscMemmove() in that case. 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith Not Collective 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith Input Parameters: 1902d382aafbSBarry Smith + b - pointer to initial memory space 1903d382aafbSBarry Smith - n - length (in bytes) of space to copy 1904d382aafbSBarry Smith 1905d382aafbSBarry Smith Output Parameter: 1906d382aafbSBarry Smith . a - pointer to copy space 1907d382aafbSBarry Smith 1908d382aafbSBarry Smith Level: intermediate 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith Compile Option: 1911d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1912d382aafbSBarry Smith for memory copies on double precision values. 1913d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1914d382aafbSBarry Smith for memory copies on double precision values. 1915d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1916d382aafbSBarry Smith for memory copies on double precision values. 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith Note: 1919d382aafbSBarry Smith This routine is analogous to memcpy(). 1920d382aafbSBarry Smith 1921503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1922503cfb0cSBarry Smith 1923d382aafbSBarry Smith Concepts: memory^copying 1924d382aafbSBarry Smith Concepts: copying^memory 1925d382aafbSBarry Smith 1926d382aafbSBarry Smith .seealso: PetscMemmove() 1927d382aafbSBarry Smith 1928d382aafbSBarry Smith @*/ 19297087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1930d382aafbSBarry Smith { 1931d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1932c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1933c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1934a7e36092SMatthew G Knepley PetscFunctionBegin; 1935e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1936e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1937a7e36092SMatthew G Knepley #else 1938d382aafbSBarry Smith PetscFunctionBegin; 1939a7e36092SMatthew G Knepley #endif 1940a47a537aSLisandro Dalcin if (a != b && n > 0) { 1941d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1942e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1943d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1944d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1947c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1948d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1949d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1950c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1951c5df96a5SBarry Smith PetscErrorCode ierr; 1952c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19538b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1954d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1955d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1956d382aafbSBarry Smith #else 1957d382aafbSBarry Smith size_t i; 1958d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1959d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1960d382aafbSBarry Smith #endif 1961d382aafbSBarry Smith } else { 1962d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1963d382aafbSBarry Smith } 1964d382aafbSBarry Smith #else 1965d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1966d382aafbSBarry Smith #endif 1967d382aafbSBarry Smith } 1968d382aafbSBarry Smith PetscFunctionReturn(0); 1969d382aafbSBarry Smith } 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith /*@C 1972d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1973d382aafbSBarry Smith 1974d382aafbSBarry Smith Not Collective 1975d382aafbSBarry Smith 1976d382aafbSBarry Smith Input Parameters: 1977d382aafbSBarry Smith + a - pointer to beginning memory location 1978d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith Level: intermediate 1981d382aafbSBarry Smith 1982d382aafbSBarry Smith Compile Option: 1983d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1984d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1985d382aafbSBarry Smith 1986503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1987503cfb0cSBarry Smith 1988d382aafbSBarry Smith Concepts: memory^zeroing 1989d382aafbSBarry Smith Concepts: zeroing^memory 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith .seealso: PetscMemcpy() 1992d382aafbSBarry Smith @*/ 19937087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1994d382aafbSBarry Smith { 1995d382aafbSBarry Smith if (n > 0) { 1996d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1997e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1998d382aafbSBarry Smith #endif 1999d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2000d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2001d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2002d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2003d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2004d382aafbSBarry Smith } else { 2005d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2006d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2007d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2008d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2009d382aafbSBarry Smith } else { 2010d382aafbSBarry Smith #endif 2011d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2012d382aafbSBarry Smith bzero((char *)a,n); 2013d382aafbSBarry Smith #else 2014d382aafbSBarry Smith memset((char*)a,0,n); 2015d382aafbSBarry Smith #endif 2016d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2017d382aafbSBarry Smith } 2018d382aafbSBarry Smith #endif 2019d382aafbSBarry Smith } 2020d382aafbSBarry Smith return 0; 2021d382aafbSBarry Smith } 2022d382aafbSBarry Smith 2023d382aafbSBarry Smith /*MC 2024d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2025d382aafbSBarry Smith 2026eca87e8dSBarry Smith Synopsis: 2027aaa7dc30SBarry Smith #include <petscsys.h> 2028eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2029eca87e8dSBarry Smith 2030d382aafbSBarry Smith Not Collective 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith Input Parameters: 2033d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2034d382aafbSBarry Smith . n - number of elements to fetch 2035d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203650d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith Level: developer 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith Notes: 2041d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2042d382aafbSBarry Smith 204350d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204450d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204550d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 204763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 204863cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2051d382aafbSBarry Smith address). 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith Concepts: memory 2054d382aafbSBarry Smith M*/ 2055d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2056d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2057d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2058d382aafbSBarry Smith } while (0) 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith /* 2061d382aafbSBarry Smith Determine if some of the kernel computation routines use 2062d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2063d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2064d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2065e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2066d382aafbSBarry Smith */ 2067d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2068d382aafbSBarry Smith 2069d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2070d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2071d382aafbSBarry Smith #endif 2072d382aafbSBarry Smith 20735a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20745a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2075d382aafbSBarry Smith #endif 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2078d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2082d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2086d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2090d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2094d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2095d382aafbSBarry Smith #endif 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2098d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2099d382aafbSBarry Smith #endif 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2102d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2106d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2110d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2111d382aafbSBarry Smith #endif 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2114d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2115d382aafbSBarry Smith #endif 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2118d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2122d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2123d382aafbSBarry Smith #endif 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith #endif 2126d382aafbSBarry Smith 2127d382aafbSBarry Smith /* 2128d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2129d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2130d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2131d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2132d382aafbSBarry Smith ugly extern "C" {} wrappers. 2133d382aafbSBarry Smith */ 2134d382aafbSBarry Smith #if defined(__cplusplus) 2135d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2136d382aafbSBarry Smith #define EXTERN_C_END } 2137d382aafbSBarry Smith #else 2138d382aafbSBarry Smith #define EXTERN_C_BEGIN 2139d382aafbSBarry Smith #define EXTERN_C_END 2140d382aafbSBarry Smith #endif 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith /*MC 2145d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2146d382aafbSBarry Smith communication 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith Level: beginner 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2153d382aafbSBarry Smith M*/ 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith /*MC 2156d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2157d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 21581cc8b206SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith Level: beginner 2161d382aafbSBarry Smith 21621cc8b206SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL 2163d382aafbSBarry Smith M*/ 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith /*MC 21668619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21678619c96cSJed Brown 21688619c96cSJed Brown Synopsis: 21698619c96cSJed Brown #include <petscsys.h> 21708619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21718619c96cSJed Brown 21728619c96cSJed Brown Level: beginner 21738619c96cSJed Brown 21748619c96cSJed Brown Note: 21758cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21768619c96cSJed Brown 21778619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21788619c96cSJed Brown M*/ 21798619c96cSJed Brown 21808619c96cSJed Brown /*MC 2181d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith Level: beginner 2184d382aafbSBarry Smith 21851cc8b206SBarry Smith .seealso: PetscScalar 2186d382aafbSBarry Smith M*/ 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith /*MC 2189d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith Level: beginner 2192d382aafbSBarry Smith 2193d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2194d382aafbSBarry Smith pass this value 2195d382aafbSBarry Smith 21961cc8b206SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT 2197d382aafbSBarry Smith M*/ 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2200d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2201014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2202014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2203d382aafbSBarry Smith #else 2204d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2205d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2206d382aafbSBarry Smith #endif 2207d382aafbSBarry Smith #endif 2208d382aafbSBarry Smith 2209d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2212d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2213d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2214d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2215d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2216d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2217d382aafbSBarry Smith 2218c5df96a5SBarry Smith #undef __FUNCT__ 2219c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 222061b0d812SBarry Smith /*@C 222161b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 222261b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 222361b0d812SBarry Smith 222461b0d812SBarry Smith Not Collective 222561b0d812SBarry Smith 222661b0d812SBarry Smith Input Parameter: 222761b0d812SBarry Smith . a - the PetscInt value 222861b0d812SBarry Smith 222961b0d812SBarry Smith Output Parameter: 223061b0d812SBarry Smith . b - the resulting PetscBLASInt value 223161b0d812SBarry Smith 223261b0d812SBarry Smith Level: advanced 223361b0d812SBarry Smith 223461b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 223561b0d812SBarry Smith @*/ 2236c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2237c5df96a5SBarry Smith { 2238c5df96a5SBarry Smith PetscFunctionBegin; 2239ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2240c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2241c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2242c5df96a5SBarry Smith #endif 2243c5df96a5SBarry Smith PetscFunctionReturn(0); 2244c5df96a5SBarry Smith } 2245c5df96a5SBarry Smith 22464dc2109aSBarry Smith #undef __FUNCT__ 22474dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 224861b0d812SBarry Smith /*@C 224961b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 225061b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 225161b0d812SBarry Smith 225261b0d812SBarry Smith Not Collective 225361b0d812SBarry Smith 225461b0d812SBarry Smith Input Parameter: 225561b0d812SBarry Smith . a - the PetscInt value 225661b0d812SBarry Smith 225761b0d812SBarry Smith Output Parameter: 225861b0d812SBarry Smith . b - the resulting PetscMPIInt value 225961b0d812SBarry Smith 226061b0d812SBarry Smith Level: advanced 226161b0d812SBarry Smith 226261b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 226361b0d812SBarry Smith @*/ 22644dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22654dc2109aSBarry Smith { 22664dc2109aSBarry Smith PetscFunctionBegin; 2267ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22684dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22694dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22704dc2109aSBarry Smith #endif 22714dc2109aSBarry Smith PetscFunctionReturn(0); 22724dc2109aSBarry Smith } 22734dc2109aSBarry Smith 2274bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 22752f18eb33SBarry Smith 22762f18eb33SBarry Smith #undef __FUNCT__ 22772f18eb33SBarry Smith #define __FUNCT__ "PetscRealIntMultTruncate" 22782f18eb33SBarry Smith /*@C 22792f18eb33SBarry Smith 22802f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22812f18eb33SBarry Smith 22822f18eb33SBarry Smith Not Collective 22832f18eb33SBarry Smith 22842f18eb33SBarry Smith Input Parameter: 22852f18eb33SBarry Smith + a - the PetscReal value 22862f18eb33SBarry Smith - b - the second value 22872f18eb33SBarry Smith 22882f18eb33SBarry Smith Output Parameter: 22892f18eb33SBarry Smith . c - the result as a PetscInt value 22902f18eb33SBarry Smith 2291bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 22922f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 22932f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22942f18eb33SBarry Smith 22952f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 22962f18eb33SBarry Smith 22972f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 22982f18eb33SBarry Smith 22992f18eb33SBarry Smith Level: advanced 23002f18eb33SBarry Smith 23012f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23022f18eb33SBarry Smith @*/ 23032f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23042f18eb33SBarry Smith { 2305bafee8b4SSatish Balay PetscInt64 r; 23062f18eb33SBarry Smith 2307bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23082f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23092f18eb33SBarry Smith return (PetscInt) r; 23102f18eb33SBarry Smith } 23112f18eb33SBarry Smith 23122f18eb33SBarry Smith #undef __FUNCT__ 23132f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultTruncate" 23142f18eb33SBarry Smith /*@C 23152f18eb33SBarry Smith 23162f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23172f18eb33SBarry Smith 23182f18eb33SBarry Smith Not Collective 23192f18eb33SBarry Smith 23202f18eb33SBarry Smith Input Parameter: 23212f18eb33SBarry Smith + a - the PetscInt value 23222f18eb33SBarry Smith - b - the second value 23232f18eb33SBarry Smith 23242f18eb33SBarry Smith Output Parameter: 23252f18eb33SBarry Smith . c - the result as a PetscInt value 23262f18eb33SBarry Smith 2327bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23282f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23292f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23302f18eb33SBarry Smith 23312f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23322f18eb33SBarry Smith 23332f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23342f18eb33SBarry Smith 23352f18eb33SBarry Smith Level: advanced 23362f18eb33SBarry Smith 23372f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23382f18eb33SBarry Smith @*/ 23392f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23402f18eb33SBarry Smith { 2341bafee8b4SSatish Balay PetscInt64 r; 23422f18eb33SBarry Smith 2343bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23442f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23452f18eb33SBarry Smith return (PetscInt) r; 23462f18eb33SBarry Smith } 23472f18eb33SBarry Smith 23482f18eb33SBarry Smith #undef __FUNCT__ 2349f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumTruncate" 2350f91af8c7SBarry Smith /*@C 2351f91af8c7SBarry Smith 2352f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2353f91af8c7SBarry Smith 2354f91af8c7SBarry Smith Not Collective 2355f91af8c7SBarry Smith 2356f91af8c7SBarry Smith Input Parameter: 2357f91af8c7SBarry Smith + a - the PetscInt value 2358f91af8c7SBarry Smith - b - the second value 2359f91af8c7SBarry Smith 2360f91af8c7SBarry Smith Output Parameter: 2361f91af8c7SBarry Smith . c - the result as a PetscInt value 2362f91af8c7SBarry Smith 2363bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2364f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2365f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2366f91af8c7SBarry Smith 2367f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2368f91af8c7SBarry Smith 2369f91af8c7SBarry Smith Level: advanced 2370f91af8c7SBarry Smith 2371f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2372f91af8c7SBarry Smith @*/ 2373f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2374f91af8c7SBarry Smith { 2375bafee8b4SSatish Balay PetscInt64 r; 2376f91af8c7SBarry Smith 2377bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2378f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2379f91af8c7SBarry Smith return (PetscInt) r; 2380f91af8c7SBarry Smith } 2381f91af8c7SBarry Smith 2382f91af8c7SBarry Smith #undef __FUNCT__ 23832f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultError" 23842f18eb33SBarry Smith /*@C 23852f18eb33SBarry Smith 23862f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23872f18eb33SBarry Smith 23882f18eb33SBarry Smith Not Collective 23892f18eb33SBarry Smith 23902f18eb33SBarry Smith Input Parameter: 23912f18eb33SBarry Smith + a - the PetscInt value 23922f18eb33SBarry Smith - b - the second value 23932f18eb33SBarry Smith 23942f18eb33SBarry Smith Output Parameter:ma 23952f18eb33SBarry Smith . c - the result as a PetscInt value 23962f18eb33SBarry Smith 2397bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 23982f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 23992f18eb33SBarry Smith 24002f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 24012f18eb33SBarry Smith 24022f18eb33SBarry Smith Level: advanced 24032f18eb33SBarry Smith 24042f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 24052f18eb33SBarry Smith @*/ 24062f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24072f18eb33SBarry Smith { 2408bafee8b4SSatish Balay PetscInt64 r; 24092f18eb33SBarry Smith 24102f18eb33SBarry Smith PetscFunctionBegin; 2411bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24122f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24132f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24142f18eb33SBarry Smith #endif 2415f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2416f91af8c7SBarry Smith PetscFunctionReturn(0); 2417f91af8c7SBarry Smith } 2418f91af8c7SBarry Smith 2419f91af8c7SBarry Smith #undef __FUNCT__ 2420f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumError" 2421f91af8c7SBarry Smith /*@C 2422f91af8c7SBarry Smith 2423f91af8c7SBarry Smith PetscIntSumError - Computes the product of two positive PetscInt and generates an error with overflow. 2424f91af8c7SBarry Smith 2425f91af8c7SBarry Smith Not Collective 2426f91af8c7SBarry Smith 2427f91af8c7SBarry Smith Input Parameter: 2428f91af8c7SBarry Smith + a - the PetscInt value 2429f91af8c7SBarry Smith - b - the second value 2430f91af8c7SBarry Smith 2431f91af8c7SBarry Smith Output Parameter:ma 2432f91af8c7SBarry Smith . c - the result as a PetscInt value 2433f91af8c7SBarry Smith 2434bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2435f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2436f91af8c7SBarry Smith 2437f91af8c7SBarry Smith Level: advanced 2438f91af8c7SBarry Smith 2439f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2440f91af8c7SBarry Smith @*/ 2441f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2442f91af8c7SBarry Smith { 2443bafee8b4SSatish Balay PetscInt64 r; 2444f91af8c7SBarry Smith 2445f91af8c7SBarry Smith PetscFunctionBegin; 2446bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2447f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2448f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2449f91af8c7SBarry Smith #endif 2450f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24512f18eb33SBarry Smith PetscFunctionReturn(0); 24522f18eb33SBarry Smith } 2453c5df96a5SBarry Smith 2454d382aafbSBarry Smith /* 24552981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2456d382aafbSBarry Smith */ 2457d382aafbSBarry Smith #if defined(hz) 2458d382aafbSBarry Smith #undef hz 2459d382aafbSBarry Smith #endif 2460d382aafbSBarry Smith 2461d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2462d382aafbSBarry Smith 2463d382aafbSBarry Smith 2464d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2465d382aafbSBarry Smith #include <limits.h> 2466d382aafbSBarry Smith #endif 2467d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2468d382aafbSBarry Smith #include <sys/param.h> 2469d382aafbSBarry Smith #endif 2470d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2471d382aafbSBarry Smith #include <sys/types.h> 2472d382aafbSBarry Smith #endif 2473d382aafbSBarry Smith #if defined(MAXPATHLEN) 2474d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2475d382aafbSBarry Smith #elif defined(MAX_PATH) 2476d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2477d382aafbSBarry Smith #elif defined(_MAX_PATH) 2478d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2479d382aafbSBarry Smith #else 2480d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2481d382aafbSBarry Smith #endif 2482d382aafbSBarry Smith 2483d382aafbSBarry Smith /*MC 2484d382aafbSBarry Smith 2485d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2486d382aafbSBarry Smith 2487d382aafbSBarry Smith $ 1) classic Fortran 77 style 2488af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2489d382aafbSBarry Smith $ XXX variablename 2490d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2491d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2492d382aafbSBarry Smith $ 2493d382aafbSBarry Smith $ 2) classic Fortran 90 style 2494af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2495af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2496d382aafbSBarry Smith $ XXX variablename 2497d382aafbSBarry Smith $ 2498d382aafbSBarry Smith $ 3) Using Fortran modules 2499af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2500d382aafbSBarry Smith $ use petscXXXX 2501d382aafbSBarry Smith $ XXX variablename 2502d382aafbSBarry Smith $ 2503d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2504af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2505d382aafbSBarry Smith $ use petscXXXX 2506d382aafbSBarry Smith $ type(XXX) variablename 2507e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2508d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2509d382aafbSBarry Smith 2510d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2511d382aafbSBarry Smith 2512d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2513d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2514d382aafbSBarry Smith $ integer variablename 2515d382aafbSBarry Smith $ 2516d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2517d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2518d382aafbSBarry Smith 2519d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2520d382aafbSBarry Smith for only a few PETSc functions. 2521d382aafbSBarry Smith 2522d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2523d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2524d382aafbSBarry Smith you cannot have something like 2525d382aafbSBarry Smith $ PetscInt row,col 2526d382aafbSBarry Smith $ PetscScalar val 2527d382aafbSBarry Smith $ ... 2528d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2529d382aafbSBarry Smith You must instead have 2530d382aafbSBarry Smith $ PetscInt row(1),col(1) 2531d382aafbSBarry Smith $ PetscScalar val(1) 2532d382aafbSBarry Smith $ ... 2533d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2534d382aafbSBarry Smith 2535d382aafbSBarry Smith 2536d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2537d382aafbSBarry Smith 2538af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2539af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2540d382aafbSBarry Smith 2541af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2542af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2543af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2544d382aafbSBarry Smith 2545af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2546e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2547d382aafbSBarry Smith 2548af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2549d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2550d382aafbSBarry Smith 2551af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2552d382aafbSBarry Smith automatically by "make allfortranstubs". 2553d382aafbSBarry Smith 2554af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2555af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2556d382aafbSBarry Smith include their predecessors 2557d382aafbSBarry Smith 2558d382aafbSBarry Smith Level: beginner 2559d382aafbSBarry Smith 2560d382aafbSBarry Smith M*/ 2561d382aafbSBarry Smith 2562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 256827710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2569d382aafbSBarry Smith 2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 257260e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 257717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 257817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 258117df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2584745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 258921e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2590e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2591d382aafbSBarry Smith 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2594d382aafbSBarry Smith 259576bdecfbSBarry Smith /*J 2596d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2597d382aafbSBarry Smith 2598d382aafbSBarry Smith Level: beginner 2599d382aafbSBarry Smith 2600e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2601d382aafbSBarry Smith with the option --download-sprng 2602d382aafbSBarry Smith 26038f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 260476bdecfbSBarry Smith J*/ 260519fd82e9SBarry Smith typedef const char* PetscRandomType; 2606d382aafbSBarry Smith #define PETSCRAND "rand" 2607d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2608d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2609c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2610d382aafbSBarry Smith 2611d382aafbSBarry Smith /* Logging support */ 2612014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2613d382aafbSBarry Smith 2614607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2615d382aafbSBarry Smith 2616d382aafbSBarry Smith /*S 2617d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2618d382aafbSBarry Smith 2619d382aafbSBarry Smith Level: intermediate 2620d382aafbSBarry Smith 2621d382aafbSBarry Smith Concepts: random numbers 2622d382aafbSBarry Smith 2623d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2624d382aafbSBarry Smith S*/ 2625d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2626d382aafbSBarry Smith 2627d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2628140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2629d382aafbSBarry Smith 2630bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 263119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 263319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2634685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2636d382aafbSBarry Smith 2637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2646d382aafbSBarry Smith 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 265497540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 265597540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2656d382aafbSBarry Smith 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2668e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2669d382aafbSBarry Smith 2670d382aafbSBarry Smith /* 2671d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2672d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2673d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2674d382aafbSBarry Smith PetscBinarySeek(). 2675d382aafbSBarry Smith */ 2676d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2677d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2678d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2679d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2680d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2681d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2682d382aafbSBarry Smith 2683d382aafbSBarry Smith /*E 2684d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2685d382aafbSBarry Smith 2686d382aafbSBarry Smith Level: advanced 2687d382aafbSBarry Smith 2688d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2689d382aafbSBarry Smith E*/ 2690d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2694d382aafbSBarry Smith 2695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2698014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2701d382aafbSBarry Smith 2702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2706014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2707cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2708cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2709d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2710d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2711d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2712d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27136afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27146afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27156afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27166afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27176afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2718d382aafbSBarry Smith 27196145cd65SJed Brown /*E 27206145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27216145cd65SJed Brown 27226145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27236145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27246145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27256145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27266145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27271654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27281654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27296145cd65SJed Brown 27306145cd65SJed Brown Level: developer 27316145cd65SJed Brown 27326145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27336145cd65SJed Brown E*/ 27346145cd65SJed Brown typedef enum { 27356145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27366145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27371654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 273812af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27396145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27406145cd65SJed Brown } PetscBuildTwoSidedType; 27416145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27426145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27436145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27446145cd65SJed Brown 2745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2746d382aafbSBarry Smith 2747d382aafbSBarry Smith /*E 2748d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2749d382aafbSBarry Smith 2750d382aafbSBarry Smith Level: beginner 2751d382aafbSBarry Smith 2752d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2753d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2754d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2755d382aafbSBarry Smith E*/ 27566fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2757d382aafbSBarry Smith 2758d382aafbSBarry Smith /*MC 2759d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2760d382aafbSBarry Smith 2761d382aafbSBarry Smith Level: beginner 2762d382aafbSBarry Smith 2763d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2764eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2765eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2766d382aafbSBarry Smith 2767d382aafbSBarry Smith M*/ 2768d382aafbSBarry Smith 2769d382aafbSBarry Smith /*MC 2770d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2771d382aafbSBarry Smith value into that location 2772d382aafbSBarry Smith 2773d382aafbSBarry Smith Level: beginner 2774d382aafbSBarry Smith 2775d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2776eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2777eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2778d382aafbSBarry Smith 2779d382aafbSBarry Smith M*/ 2780d382aafbSBarry Smith 2781d382aafbSBarry Smith /*MC 2782d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2783d382aafbSBarry Smith 2784d382aafbSBarry Smith Level: beginner 2785d382aafbSBarry Smith 2786d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2787d382aafbSBarry Smith 2788d382aafbSBarry Smith M*/ 2789d382aafbSBarry Smith 2790ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2791ce94432eSBarry Smith 279245487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 279345487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 279445487dadSJed Brown 2795d382aafbSBarry Smith /*S 2796306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2797306c2d5bSBarry Smith 2798306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2799306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 280036be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2801306c2d5bSBarry Smith 2802306c2d5bSBarry Smith Sample Usage: 2803306c2d5bSBarry Smith PetscSubcommCreate() 2804306c2d5bSBarry Smith PetscSubcommSetNumber() 2805306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2806306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2807306c2d5bSBarry Smith PetscSubcommDestroy() 2808d382aafbSBarry Smith 2809d382aafbSBarry Smith Level: advanced 2810d382aafbSBarry Smith 2811d382aafbSBarry Smith Concepts: communicator, create 2812306c2d5bSBarry Smith 2813306c2d5bSBarry Smith Notes: 2814306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2815306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2816306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2817306c2d5bSBarry Smith 2818306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2819306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2820306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2821306c2d5bSBarry Smith 2822306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2823306c2d5bSBarry Smith are performed. 2824306c2d5bSBarry Smith 2825306c2d5bSBarry Smith 2826306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2827306c2d5bSBarry Smith 2828d382aafbSBarry Smith S*/ 2829d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2830d382aafbSBarry Smith 2831d382aafbSBarry Smith struct _n_PetscSubcomm { 2832d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2833d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2834306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 283545487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 283645487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2837708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 283845487dadSJed Brown PetscSubcommType type; 2839e5acf8a4SHong Zhang char *subcommprefix; 2840d382aafbSBarry Smith }; 2841d382aafbSBarry Smith 2842c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2843306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 284436be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2846014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 284965d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2850053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2851f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2852e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2853d382aafbSBarry Smith 28540f453b92SJed Brown /*S 28550f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28560f453b92SJed Brown 28570f453b92SJed Brown Level: developer 28580f453b92SJed Brown 28590f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28600f453b92SJed Brown S*/ 28610f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 286213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28630f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 286413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2865137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2866137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2867137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 286813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 286913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28700f453b92SJed Brown 2871471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2872471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2873471ecdacSJed Brown * possible. */ 287435005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2875d382aafbSBarry Smith 28769de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 28779de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 28789de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 28799de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 28809de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 28819de0f6ecSBarry Smith 2882268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 28831f817a21SBarry Smith #undef __FUNCT__ 28841f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 28851f817a21SBarry Smith /*@C 28861f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28871f817a21SBarry Smith 28881f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28891f817a21SBarry Smith 28901f817a21SBarry Smith Input Parameters: 28911f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28921f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28931f817a21SBarry Smith 2894850545d0SSatish Balay Level: intermediate 2895850545d0SSatish Balay 28961f817a21SBarry Smith Options Database: 28971f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 28981f817a21SBarry Smith @*/ 2899dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2900dff31646SBarry Smith { 2901dff31646SBarry Smith size_t len; 2902dff31646SBarry Smith char *vstring; 2903dff31646SBarry Smith PetscErrorCode ierr; 2904dff31646SBarry Smith 29051f817a21SBarry Smith PetscFunctionBegin; 29068d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2907dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 290835005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2909dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2910dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29111f817a21SBarry Smith PetscFunctionReturn(0); 2912dff31646SBarry Smith } 2913dff31646SBarry Smith 2914b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2915fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2916fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2917f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2918fe278a28SBarry Smith 2919f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2920f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2921b967cddfSBarry Smith 292204102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2923dff31646SBarry Smith 292468e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29255dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2926d382aafbSBarry Smith 2927b2566f29SBarry Smith 2928b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2929b2566f29SBarry Smith /* 2930b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2931b2566f29SBarry Smith */ 29328f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 293377a5e07dSBarry Smith 293477a5e07dSBarry Smith /*MC 293577a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 293677a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 293777a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 293877a5e07dSBarry Smith 293977a5e07dSBarry Smith Collective on MPI_Comm 294077a5e07dSBarry Smith 294177a5e07dSBarry Smith Synopsis: 294277a5e07dSBarry Smith #include <petscsys.h> 294377a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 294477a5e07dSBarry Smith 294577a5e07dSBarry Smith Input Parameters: 294677a5e07dSBarry Smith + indata - pointer to the input data to be reduced 294777a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 294877a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 294977a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 295077a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 295177a5e07dSBarry Smith 295277a5e07dSBarry Smith Output Parameter: 295377a5e07dSBarry Smith . outdata - the reduced values 295477a5e07dSBarry Smith 295577a5e07dSBarry Smith Notes: In optimized mode this directly calls MPI_Allreduce() 295677a5e07dSBarry Smith 295777a5e07dSBarry Smith Level: developer 295877a5e07dSBarry Smith 295977a5e07dSBarry Smith .seealso: MPI_Allreduce() 296077a5e07dSBarry Smith M*/ 2961b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2962b2566f29SBarry Smith #else 2963b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2964b2566f29SBarry Smith #endif 2965b2566f29SBarry Smith 2966d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2967d382aafbSBarry Smith #undef __FUNCT__ 2968d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2969d382aafbSBarry Smith 2970d382aafbSBarry Smith #endif 2971