1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240fab38c73SJed Brown 241*99a4b90dSDave May typedef short PetscShort; 242*99a4b90dSDave May typedef char PetscChar; 243*99a4b90dSDave May typedef float PetscFloat; 244*99a4b90dSDave May 245d382aafbSBarry Smith /*MC 246d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2473b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 248d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 249d382aafbSBarry Smith 250d382aafbSBarry Smith Level: intermediate 251d382aafbSBarry Smith 252d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 253d382aafbSBarry Smith M*/ 254fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 255fab38c73SJed Brown typedef int64_t Petsc64bitInt; 256fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 257f505b413SSatish Balay typedef long long Petsc64bitInt; 258f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 259236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 260236ed0a3SSatish Balay #else 261f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 262236ed0a3SSatish Balay #endif 263d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 264236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 26541860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 26668db2e82SFande Kong # define MPIU_INT MPI_LONG_LONG_INT 267fab38c73SJed Brown # else 268d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 269fab38c73SJed Brown # endif 270d382aafbSBarry Smith #else 271d382aafbSBarry Smith typedef int PetscInt; 272d382aafbSBarry Smith #define MPIU_INT MPI_INT 273d382aafbSBarry Smith #endif 274e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 275e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 276e56f5c9eSBarry Smith #else 277e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 278e56f5c9eSBarry Smith #endif 279236ed0a3SSatish Balay 280d382aafbSBarry Smith 281702bc34aSSatish Balay /*MC 282702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 283702bc34aSSatish Balay 284702bc34aSSatish Balay Level: intermediate 285702bc34aSSatish Balay 286702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 287702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 288702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 289702bc34aSSatish Balay 290c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2912981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 292702bc34aSSatish Balay 2932981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 294702bc34aSSatish Balay if you run ./configure with the option 295702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2962981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2972981ebdbSBarry Smith 2982981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2992981ebdbSBarry Smith 3002981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 301702bc34aSSatish Balay 302702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 303702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 304702bc34aSSatish Balay 3051cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 306702bc34aSSatish Balay 307702bc34aSSatish Balay M*/ 308702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 309702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 310702bc34aSSatish Balay #else 311702bc34aSSatish Balay typedef int PetscBLASInt; 312702bc34aSSatish Balay #endif 313702bc34aSSatish Balay 31458b60935SBarry Smith /*EC 31558b60935SBarry Smith 3162981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 31758b60935SBarry Smith 31858b60935SBarry Smith Level: advanced 31958b60935SBarry Smith 32058b60935SBarry Smith .seealso: PetscObjectSetPrecision() 32158b60935SBarry Smith E*/ 32258b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 323014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 32458b60935SBarry Smith 325503cfb0cSBarry Smith /* 326503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 327503cfb0cSBarry Smith */ 328d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 329adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 330d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 331adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 332d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 333adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 334d382aafbSBarry Smith #else 335d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 336d382aafbSBarry Smith #endif 337d382aafbSBarry Smith 338d382aafbSBarry Smith /* 339d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 340d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 341d382aafbSBarry Smith */ 342014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 343d382aafbSBarry Smith 344d382aafbSBarry Smith /* 345d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 346d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 347d382aafbSBarry Smith */ 348014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 349d382aafbSBarry Smith 350d382aafbSBarry Smith /*MC 351d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 352d382aafbSBarry Smith 353d382aafbSBarry Smith Synopsis: 354aaa7dc30SBarry Smith #include <petscsys.h> 355ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 356d382aafbSBarry Smith 357eca87e8dSBarry Smith Not Collective 358eca87e8dSBarry Smith 359d382aafbSBarry Smith Input Parameters: 360d382aafbSBarry Smith . cond - condition or expression 361d382aafbSBarry Smith 362d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 363d382aafbSBarry Smith branch is unlikely. 364d382aafbSBarry Smith 365d382aafbSBarry Smith Level: advanced 366d382aafbSBarry Smith 367d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 368d382aafbSBarry Smith M*/ 369d382aafbSBarry Smith 370d382aafbSBarry Smith /*MC 371d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 372d382aafbSBarry Smith 373d382aafbSBarry Smith Synopsis: 374aaa7dc30SBarry Smith #include <petscsys.h> 375ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 376d382aafbSBarry Smith 377eca87e8dSBarry Smith Not Collective 378eca87e8dSBarry Smith 379d382aafbSBarry Smith Input Parameters: 380d382aafbSBarry Smith . cond - condition or expression 381d382aafbSBarry Smith 382d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 383d382aafbSBarry Smith branch is likely. 384d382aafbSBarry Smith 385d382aafbSBarry Smith Level: advanced 386d382aafbSBarry Smith 387d382aafbSBarry Smith .seealso: PetscUnlikely() 388d382aafbSBarry Smith M*/ 389d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 390d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 391d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 392d382aafbSBarry Smith #else 393cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 394cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 395d382aafbSBarry Smith #endif 396d382aafbSBarry Smith 397d382aafbSBarry Smith /* 398d382aafbSBarry Smith Declare extern C stuff after including external header files 399d382aafbSBarry Smith */ 400d382aafbSBarry Smith 401d382aafbSBarry Smith 402d382aafbSBarry Smith /* 403d382aafbSBarry Smith Basic PETSc constants 404d382aafbSBarry Smith */ 405d382aafbSBarry Smith 406d382aafbSBarry Smith /*E 407ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 408d382aafbSBarry Smith 409d382aafbSBarry Smith Level: beginner 410d382aafbSBarry Smith 411ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 41234e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41334e82e7dSBarry Smith 4141cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 415d382aafbSBarry Smith E*/ 416ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4176a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4185a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 41970b3c8c7SBarry Smith 4208b49ba18SBarry Smith /* 4218b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4228b49ba18SBarry Smith */ 4238b49ba18SBarry Smith #include <petscmath.h> 4248b49ba18SBarry Smith 42570b3c8c7SBarry Smith /*E 42670b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 42770b3c8c7SBarry Smith 42870b3c8c7SBarry Smith Level: beginner 42970b3c8c7SBarry Smith 43070b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 43170b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 43270b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 43370b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43470b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 43570b3c8c7SBarry Smith 43670b3c8c7SBarry Smith E*/ 43770b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4386a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 439d382aafbSBarry Smith 440d382aafbSBarry Smith /*MC 441ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 442d382aafbSBarry Smith 443d382aafbSBarry Smith Level: beginner 444d382aafbSBarry Smith 445d382aafbSBarry Smith Note: Zero integer 446d382aafbSBarry Smith 447ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 448d382aafbSBarry Smith M*/ 449d382aafbSBarry Smith 450d382aafbSBarry Smith /*MC 451ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 452d382aafbSBarry Smith 453d382aafbSBarry Smith Level: beginner 454d382aafbSBarry Smith 455d382aafbSBarry Smith Note: Nonzero integer 456d382aafbSBarry Smith 457ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 458d382aafbSBarry Smith M*/ 459d382aafbSBarry Smith 460d382aafbSBarry Smith /*MC 4610298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 462d382aafbSBarry Smith 463d382aafbSBarry Smith Level: beginner 464d382aafbSBarry Smith 465d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 466d382aafbSBarry Smith some default 467d382aafbSBarry Smith 468d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 469503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 470d382aafbSBarry Smith 471d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 472d382aafbSBarry Smith 473d382aafbSBarry Smith M*/ 4743bcbec90SJed Brown #define PETSC_NULL NULL 475d382aafbSBarry Smith 476d382aafbSBarry Smith /*MC 4770298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 478d382aafbSBarry Smith 479d382aafbSBarry Smith Level: beginner 480d382aafbSBarry Smith 481d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 482d382aafbSBarry Smith some default 483d382aafbSBarry Smith 484d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 485d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 486d382aafbSBarry Smith 487d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 488d382aafbSBarry Smith 489d382aafbSBarry Smith M*/ 4900298fd71SBarry Smith #define PETSC_IGNORE NULL 491d382aafbSBarry Smith 492d382aafbSBarry Smith /*MC 493557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 494557d4da8SBarry Smith where you wish PETSc to use the default. 495557d4da8SBarry Smith 496557d4da8SBarry Smith Level: beginner 497557d4da8SBarry Smith 498557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 499557d4da8SBarry Smith 500557d4da8SBarry Smith M*/ 501557d4da8SBarry Smith #define PETSC_DECIDE -1 502557d4da8SBarry Smith 503557d4da8SBarry Smith /*MC 504d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 505d382aafbSBarry Smith where you wish PETSc to compute the required value. 506d382aafbSBarry Smith 507d382aafbSBarry Smith Level: beginner 508d382aafbSBarry Smith 509557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 510557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 511557d4da8SBarry Smith 5120298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 513d382aafbSBarry Smith 514d382aafbSBarry Smith M*/ 515d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 516d382aafbSBarry Smith 517d382aafbSBarry Smith /*MC 518557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 519557d4da8SBarry Smith where you wish PETSc to use the default. 520557d4da8SBarry Smith 521557d4da8SBarry Smith Level: beginner 522557d4da8SBarry Smith 5232d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 524557d4da8SBarry Smith 5250298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 526557d4da8SBarry Smith 527557d4da8SBarry Smith M*/ 528557d4da8SBarry Smith #define PETSC_DEFAULT -2 529557d4da8SBarry Smith 530557d4da8SBarry Smith /*MC 531d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 532d382aafbSBarry Smith all the processs that PETSc knows about. 533d382aafbSBarry Smith 534d382aafbSBarry Smith Level: beginner 535d382aafbSBarry Smith 536d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 537d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 538d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 539a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 540a990b902SBarry Smith 541a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 542a990b902SBarry Smith is called because it may not have a valid value yet. 543d382aafbSBarry Smith 544d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 545d382aafbSBarry Smith 546d382aafbSBarry Smith M*/ 547014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 548d382aafbSBarry Smith 549d382aafbSBarry Smith /*MC 550503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 551d382aafbSBarry Smith 552d382aafbSBarry Smith Level: beginner 553d382aafbSBarry Smith 554a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 555a990b902SBarry Smith 556d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 557d382aafbSBarry Smith 558d382aafbSBarry Smith M*/ 559d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 560d382aafbSBarry Smith 561d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 562014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 563014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 564014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5654cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 566d382aafbSBarry Smith 567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 570d382aafbSBarry Smith 571d382aafbSBarry Smith /*MC 572854ce69bSBarry Smith PetscMalloc - Allocates memory, One should use PetscMalloc1() or PetscCalloc1() usually instead of this 573d382aafbSBarry Smith 574eca87e8dSBarry Smith Synopsis: 575aaa7dc30SBarry Smith #include <petscsys.h> 576eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 577eca87e8dSBarry Smith 578eca87e8dSBarry Smith Not Collective 579eca87e8dSBarry Smith 580d382aafbSBarry Smith Input Parameter: 581d382aafbSBarry Smith . m - number of bytes to allocate 582d382aafbSBarry Smith 583d382aafbSBarry Smith Output Parameter: 584d382aafbSBarry Smith . result - memory allocated 585d382aafbSBarry Smith 586d382aafbSBarry Smith Level: beginner 587d382aafbSBarry Smith 58849d7da52SJed Brown Notes: 58949d7da52SJed Brown Memory is always allocated at least double aligned 590d382aafbSBarry Smith 59149d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 592d382aafbSBarry Smith 593d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 594d382aafbSBarry Smith 595d382aafbSBarry Smith Concepts: memory allocation 596d382aafbSBarry Smith 597d382aafbSBarry Smith M*/ 59849d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 599d382aafbSBarry Smith 600d382aafbSBarry Smith /*MC 601503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 602d382aafbSBarry Smith 603d382aafbSBarry Smith Synopsis: 604aaa7dc30SBarry Smith #include <petscsys.h> 605d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 606d382aafbSBarry Smith 607eca87e8dSBarry Smith Not Collective 608eca87e8dSBarry Smith 609eca87e8dSBarry Smith Input Parameters: 610eca87e8dSBarry Smith . addr - address to align (any pointer type) 611eca87e8dSBarry Smith 612d382aafbSBarry Smith Level: developer 613d382aafbSBarry Smith 614d382aafbSBarry Smith .seealso: PetscMallocAlign() 615d382aafbSBarry Smith 616d382aafbSBarry Smith Concepts: memory allocation 617d382aafbSBarry Smith M*/ 618d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 619d382aafbSBarry Smith 620d382aafbSBarry Smith /*MC 621785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 622d382aafbSBarry Smith 623eca87e8dSBarry Smith Synopsis: 624aaa7dc30SBarry Smith #include <petscsys.h> 625785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 626785e854fSJed Brown 627785e854fSJed Brown Not Collective 628785e854fSJed Brown 629785e854fSJed Brown Input Parameter: 630785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 631785e854fSJed Brown 632785e854fSJed Brown Output Parameter: 633785e854fSJed Brown . r1 - memory allocated in first chunk 634785e854fSJed Brown 635785e854fSJed Brown Level: developer 636785e854fSJed Brown 6371795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 638785e854fSJed Brown 639785e854fSJed Brown Concepts: memory allocation 640785e854fSJed Brown 641785e854fSJed Brown M*/ 642f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 643785e854fSJed Brown 644785e854fSJed Brown /*MC 6451795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6461795a4d1SJed Brown 6471795a4d1SJed Brown Synopsis: 648aaa7dc30SBarry Smith #include <petscsys.h> 6491795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6501795a4d1SJed Brown 6511795a4d1SJed Brown Not Collective 6521795a4d1SJed Brown 6531795a4d1SJed Brown Input Parameter: 6541795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6551795a4d1SJed Brown 6561795a4d1SJed Brown Output Parameter: 6571795a4d1SJed Brown . r1 - memory allocated in first chunk 6581795a4d1SJed Brown 6591795a4d1SJed Brown Level: developer 6601795a4d1SJed Brown 6611795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6621795a4d1SJed Brown 6631795a4d1SJed Brown Concepts: memory allocation 6641795a4d1SJed Brown 6651795a4d1SJed Brown M*/ 6661795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6671795a4d1SJed Brown 6681795a4d1SJed Brown /*MC 669dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 670d382aafbSBarry Smith 671eca87e8dSBarry Smith Synopsis: 672aaa7dc30SBarry Smith #include <petscsys.h> 673dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 674eca87e8dSBarry Smith 675eca87e8dSBarry Smith Not Collective 676eca87e8dSBarry Smith 677d382aafbSBarry Smith Input Parameter: 678d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 679dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 680d382aafbSBarry Smith 681d382aafbSBarry Smith Output Parameter: 682d382aafbSBarry Smith + r1 - memory allocated in first chunk 683d382aafbSBarry Smith - r2 - memory allocated in second chunk 684d382aafbSBarry Smith 685d382aafbSBarry Smith Level: developer 686d382aafbSBarry Smith 6871795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 688d382aafbSBarry Smith 689d382aafbSBarry Smith Concepts: memory allocation 690d382aafbSBarry Smith 691d382aafbSBarry Smith M*/ 69220a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6931d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 694d382aafbSBarry Smith #else 695ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 696ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6973589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 698d382aafbSBarry Smith #endif 699d382aafbSBarry Smith 700d382aafbSBarry Smith /*MC 7011795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 702d382aafbSBarry Smith 703eca87e8dSBarry Smith Synopsis: 704aaa7dc30SBarry Smith #include <petscsys.h> 7051795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 706eca87e8dSBarry Smith 707eca87e8dSBarry Smith Not Collective 708eca87e8dSBarry Smith 709d382aafbSBarry Smith Input Parameter: 710d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7111795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7121795a4d1SJed Brown 7131795a4d1SJed Brown Output Parameter: 7141795a4d1SJed Brown + r1 - memory allocated in first chunk 7151795a4d1SJed Brown - r2 - memory allocated in second chunk 7161795a4d1SJed Brown 7171795a4d1SJed Brown Level: developer 7181795a4d1SJed Brown 7191795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7201795a4d1SJed Brown 7211795a4d1SJed Brown Concepts: memory allocation 7221795a4d1SJed Brown M*/ 7231795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7241795a4d1SJed Brown 7251795a4d1SJed Brown /*MC 726dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 727d382aafbSBarry Smith 728d382aafbSBarry Smith Synopsis: 729aaa7dc30SBarry Smith #include <petscsys.h> 730dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 731d382aafbSBarry Smith 732d382aafbSBarry Smith Not Collective 733d382aafbSBarry Smith 734d382aafbSBarry Smith Input Parameter: 735d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 736d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 737dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 738d382aafbSBarry Smith 739d382aafbSBarry Smith Output Parameter: 740d382aafbSBarry Smith + r1 - memory allocated in first chunk 741d382aafbSBarry Smith . r2 - memory allocated in second chunk 742d382aafbSBarry Smith - r3 - memory allocated in third chunk 743d382aafbSBarry Smith 744d382aafbSBarry Smith Level: developer 745d382aafbSBarry Smith 7461795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 747d382aafbSBarry Smith 748d382aafbSBarry Smith Concepts: memory allocation 749d382aafbSBarry Smith 750d382aafbSBarry Smith M*/ 75120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7521d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 753d382aafbSBarry Smith #else 754ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 755278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7563589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 757d382aafbSBarry Smith #endif 758d382aafbSBarry Smith 759d382aafbSBarry Smith /*MC 7601795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 761d382aafbSBarry Smith 762eca87e8dSBarry Smith Synopsis: 763aaa7dc30SBarry Smith #include <petscsys.h> 7641795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 765eca87e8dSBarry Smith 766eca87e8dSBarry Smith Not Collective 767eca87e8dSBarry Smith 768d382aafbSBarry Smith Input Parameter: 769d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 770d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7711795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7721795a4d1SJed Brown 7731795a4d1SJed Brown Output Parameter: 7741795a4d1SJed Brown + r1 - memory allocated in first chunk 7751795a4d1SJed Brown . r2 - memory allocated in second chunk 7761795a4d1SJed Brown - r3 - memory allocated in third chunk 7771795a4d1SJed Brown 7781795a4d1SJed Brown Level: developer 7791795a4d1SJed Brown 7801795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7811795a4d1SJed Brown 7821795a4d1SJed Brown Concepts: memory allocation 7831795a4d1SJed Brown M*/ 7841795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7851795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7861795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7871795a4d1SJed Brown 7881795a4d1SJed Brown /*MC 789dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 790d382aafbSBarry Smith 791d382aafbSBarry Smith Synopsis: 792aaa7dc30SBarry Smith #include <petscsys.h> 793dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 794d382aafbSBarry Smith 795d382aafbSBarry Smith Not Collective 796d382aafbSBarry Smith 797d382aafbSBarry Smith Input Parameter: 798d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 799d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 800d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 801dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 802d382aafbSBarry Smith 803d382aafbSBarry Smith Output Parameter: 804d382aafbSBarry Smith + r1 - memory allocated in first chunk 805d382aafbSBarry Smith . r2 - memory allocated in second chunk 806d382aafbSBarry Smith . r3 - memory allocated in third chunk 807d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 808d382aafbSBarry Smith 809d382aafbSBarry Smith Level: developer 810d382aafbSBarry Smith 8111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 812d382aafbSBarry Smith 813d382aafbSBarry Smith Concepts: memory allocation 814d382aafbSBarry Smith 815d382aafbSBarry Smith M*/ 81620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8171d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 818d382aafbSBarry Smith #else 819dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 820ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 821278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8223589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 823d382aafbSBarry Smith #endif 824d382aafbSBarry Smith 825d382aafbSBarry Smith /*MC 8261795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 827d382aafbSBarry Smith 828eca87e8dSBarry Smith Synopsis: 829aaa7dc30SBarry Smith #include <petscsys.h> 8301795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 831eca87e8dSBarry Smith 832eca87e8dSBarry Smith Not Collective 833eca87e8dSBarry Smith 834d382aafbSBarry Smith Input Parameter: 835d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 836d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 837d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8381795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8391795a4d1SJed Brown 8401795a4d1SJed Brown Output Parameter: 8411795a4d1SJed Brown + r1 - memory allocated in first chunk 8421795a4d1SJed Brown . r2 - memory allocated in second chunk 8431795a4d1SJed Brown . r3 - memory allocated in third chunk 8441795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8451795a4d1SJed Brown 8461795a4d1SJed Brown Level: developer 8471795a4d1SJed Brown 8481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8491795a4d1SJed Brown 8501795a4d1SJed Brown Concepts: memory allocation 8511795a4d1SJed Brown 8521795a4d1SJed Brown M*/ 8531795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8541795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8551795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8561795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8571795a4d1SJed Brown 8581795a4d1SJed Brown /*MC 859dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 860d382aafbSBarry Smith 861d382aafbSBarry Smith Synopsis: 862aaa7dc30SBarry Smith #include <petscsys.h> 863dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 864d382aafbSBarry Smith 865d382aafbSBarry Smith Not Collective 866d382aafbSBarry Smith 867d382aafbSBarry Smith Input Parameter: 868d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 869d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 870d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 871d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 872dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 873d382aafbSBarry Smith 874d382aafbSBarry Smith Output Parameter: 875d382aafbSBarry Smith + r1 - memory allocated in first chunk 876d382aafbSBarry Smith . r2 - memory allocated in second chunk 877d382aafbSBarry Smith . r3 - memory allocated in third chunk 878d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 879d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 880d382aafbSBarry Smith 881d382aafbSBarry Smith Level: developer 882d382aafbSBarry Smith 8831795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 884d382aafbSBarry Smith 885d382aafbSBarry Smith Concepts: memory allocation 886d382aafbSBarry Smith 887d382aafbSBarry Smith M*/ 88820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8891d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 890d382aafbSBarry Smith #else 891dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 892ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 893278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8943589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 895d382aafbSBarry Smith #endif 896d382aafbSBarry Smith 897d382aafbSBarry Smith /*MC 8981795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 899d382aafbSBarry Smith 900eca87e8dSBarry Smith Synopsis: 901aaa7dc30SBarry Smith #include <petscsys.h> 9021795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 903eca87e8dSBarry Smith 904eca87e8dSBarry Smith Not Collective 905eca87e8dSBarry Smith 906d382aafbSBarry Smith Input Parameter: 907d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 908d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 909d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 910d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9111795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9121795a4d1SJed Brown 9131795a4d1SJed Brown Output Parameter: 9141795a4d1SJed Brown + r1 - memory allocated in first chunk 9151795a4d1SJed Brown . r2 - memory allocated in second chunk 9161795a4d1SJed Brown . r3 - memory allocated in third chunk 9171795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9181795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9191795a4d1SJed Brown 9201795a4d1SJed Brown Level: developer 9211795a4d1SJed Brown 9221795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9231795a4d1SJed Brown 9241795a4d1SJed Brown Concepts: memory allocation 9251795a4d1SJed Brown 9261795a4d1SJed Brown M*/ 9271795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9281795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9291795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9301795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 931d382aafbSBarry Smith 932d382aafbSBarry Smith /*MC 933dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 934d382aafbSBarry Smith 935d382aafbSBarry Smith Synopsis: 936aaa7dc30SBarry Smith #include <petscsys.h> 937dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 938d382aafbSBarry Smith 939d382aafbSBarry Smith Not Collective 940d382aafbSBarry Smith 941d382aafbSBarry Smith Input Parameter: 942d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 943d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 944d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 945d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 946d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 947dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 948d382aafbSBarry Smith 949d382aafbSBarry Smith Output Parameter: 950d382aafbSBarry Smith + r1 - memory allocated in first chunk 951d382aafbSBarry Smith . r2 - memory allocated in second chunk 952d382aafbSBarry Smith . r3 - memory allocated in third chunk 953d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 954d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 955d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 956d382aafbSBarry Smith 957d382aafbSBarry Smith Level: developer 958d382aafbSBarry Smith 9591795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 960d382aafbSBarry Smith 961d382aafbSBarry Smith Concepts: memory allocation 962d382aafbSBarry Smith 963d382aafbSBarry Smith M*/ 96420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9651d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 966d382aafbSBarry Smith #else 967dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 968ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 969278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9703589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 971d382aafbSBarry Smith #endif 972d382aafbSBarry Smith 973d382aafbSBarry Smith /*MC 9741795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 975d382aafbSBarry Smith 976eca87e8dSBarry Smith Synopsis: 977aaa7dc30SBarry Smith #include <petscsys.h> 9781795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 979eca87e8dSBarry Smith 980eca87e8dSBarry Smith Not Collective 981eca87e8dSBarry Smith 982d382aafbSBarry Smith Input Parameter: 983d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 984d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 985d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 986d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 987d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9881795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9891795a4d1SJed Brown 9901795a4d1SJed Brown Output Parameter: 9911795a4d1SJed Brown + r1 - memory allocated in first chunk 9921795a4d1SJed Brown . r2 - memory allocated in second chunk 9931795a4d1SJed Brown . r3 - memory allocated in third chunk 9941795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9951795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9961795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9971795a4d1SJed Brown 9981795a4d1SJed Brown Level: developer 9991795a4d1SJed Brown 10001795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10011795a4d1SJed Brown 10021795a4d1SJed Brown Concepts: memory allocation 10031795a4d1SJed Brown M*/ 10041795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10051795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10061795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10071795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10081795a4d1SJed Brown 10091795a4d1SJed Brown /*MC 1010dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith Synopsis: 1013aaa7dc30SBarry Smith #include <petscsys.h> 1014dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1015d382aafbSBarry Smith 1016d382aafbSBarry Smith Not Collective 1017d382aafbSBarry Smith 1018d382aafbSBarry Smith Input Parameter: 1019d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1020d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1021d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1022d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1023d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1024d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1025dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1026d382aafbSBarry Smith 1027d382aafbSBarry Smith Output Parameter: 1028d382aafbSBarry Smith + r1 - memory allocated in first chunk 1029d382aafbSBarry Smith . r2 - memory allocated in second chunk 1030d382aafbSBarry Smith . r3 - memory allocated in third chunk 1031d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1032d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1033d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1034eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1035d382aafbSBarry Smith 1036d382aafbSBarry Smith Level: developer 1037d382aafbSBarry Smith 10381795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1039d382aafbSBarry Smith 1040d382aafbSBarry Smith Concepts: memory allocation 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith M*/ 104320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10441d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1045d382aafbSBarry Smith #else 1046dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1047ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1048278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10493589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1050d382aafbSBarry Smith #endif 1051d382aafbSBarry Smith 1052d382aafbSBarry Smith /*MC 10531795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10541795a4d1SJed Brown 10551795a4d1SJed Brown Synopsis: 1056aaa7dc30SBarry Smith #include <petscsys.h> 10571795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10581795a4d1SJed Brown 10591795a4d1SJed Brown Not Collective 10601795a4d1SJed Brown 10611795a4d1SJed Brown Input Parameter: 10621795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10631795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10641795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10651795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10661795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10671795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10681795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10691795a4d1SJed Brown 10701795a4d1SJed Brown Output Parameter: 10711795a4d1SJed Brown + r1 - memory allocated in first chunk 10721795a4d1SJed Brown . r2 - memory allocated in second chunk 10731795a4d1SJed Brown . r3 - memory allocated in third chunk 10741795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10751795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10761795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10771795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10781795a4d1SJed Brown 10791795a4d1SJed Brown Level: developer 10801795a4d1SJed Brown 10811795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10821795a4d1SJed Brown 10831795a4d1SJed Brown Concepts: memory allocation 10841795a4d1SJed Brown M*/ 10851795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10867ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10871795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10881795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10897ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10901795a4d1SJed Brown 10911795a4d1SJed Brown /*MC 1092503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1093d382aafbSBarry Smith 1094eca87e8dSBarry Smith Synopsis: 1095aaa7dc30SBarry Smith #include <petscsys.h> 1096b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1097eca87e8dSBarry Smith 1098eca87e8dSBarry Smith Not Collective 1099eca87e8dSBarry Smith 1100d382aafbSBarry Smith Output Parameter: 1101b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1102d382aafbSBarry Smith 1103d382aafbSBarry Smith Level: beginner 1104d382aafbSBarry Smith 1105ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1106d382aafbSBarry Smith 1107d382aafbSBarry Smith Concepts: memory allocation 1108d382aafbSBarry Smith 1109d382aafbSBarry Smith M*/ 1110b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1111ad0619ddSBarry Smith 1112ad0619ddSBarry Smith /*MC 1113b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1114ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1115ad0619ddSBarry Smith 1116ad0619ddSBarry Smith Synopsis: 1117aaa7dc30SBarry Smith #include <petscsys.h> 1118b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1119ad0619ddSBarry Smith 1120ad0619ddSBarry Smith Not Collective 1121ad0619ddSBarry Smith 1122ad0619ddSBarry Smith Input Parameter: 1123b00a9115SJed Brown . obj - object memory is logged to 1124ad0619ddSBarry Smith 1125ad0619ddSBarry Smith Output Parameter: 1126b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1127ad0619ddSBarry Smith 1128ad0619ddSBarry Smith Level: developer 1129ad0619ddSBarry Smith 1130ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1131ad0619ddSBarry Smith 1132ad0619ddSBarry Smith Concepts: memory allocation 1133ad0619ddSBarry Smith 1134ad0619ddSBarry Smith M*/ 1135d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith /*MC 1138d382aafbSBarry Smith PetscFree - Frees memory 1139d382aafbSBarry Smith 1140eca87e8dSBarry Smith Synopsis: 1141aaa7dc30SBarry Smith #include <petscsys.h> 1142eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1143eca87e8dSBarry Smith 1144eca87e8dSBarry Smith Not Collective 1145eca87e8dSBarry Smith 1146d382aafbSBarry Smith Input Parameter: 1147d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith Level: beginner 1150d382aafbSBarry Smith 115149d7da52SJed Brown Notes: 115249d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 115349d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1154d382aafbSBarry Smith 1155d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1156d382aafbSBarry Smith 1157d382aafbSBarry Smith Concepts: memory allocation 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith M*/ 116049d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith /*MC 1163d382aafbSBarry Smith PetscFreeVoid - Frees memory 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith Synopsis: 1166aaa7dc30SBarry Smith #include <petscsys.h> 1167d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1168d382aafbSBarry Smith 1169eca87e8dSBarry Smith Not Collective 1170eca87e8dSBarry Smith 1171eca87e8dSBarry Smith Input Parameter: 1172eca87e8dSBarry Smith . memory - memory to free 1173eca87e8dSBarry Smith 1174d382aafbSBarry Smith Level: beginner 1175d382aafbSBarry Smith 1176d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1177d382aafbSBarry Smith 1178d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith Concepts: memory allocation 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith M*/ 1183efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1184d382aafbSBarry Smith 1185d382aafbSBarry Smith 1186d382aafbSBarry Smith /*MC 1187d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1188d382aafbSBarry Smith 1189eca87e8dSBarry Smith Synopsis: 1190aaa7dc30SBarry Smith #include <petscsys.h> 1191eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1192eca87e8dSBarry Smith 1193eca87e8dSBarry Smith Not Collective 1194eca87e8dSBarry Smith 1195d382aafbSBarry Smith Input Parameter: 1196d382aafbSBarry Smith + memory1 - memory to free 1197d382aafbSBarry Smith - memory2 - 2nd memory to free 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith Level: developer 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith Concepts: memory allocation 1206d382aafbSBarry Smith 1207d382aafbSBarry Smith M*/ 1208b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1209d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1210d382aafbSBarry Smith #else 1211e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1212d382aafbSBarry Smith #endif 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith /*MC 1215d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1216d382aafbSBarry Smith 1217eca87e8dSBarry Smith Synopsis: 1218aaa7dc30SBarry Smith #include <petscsys.h> 1219eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1220eca87e8dSBarry Smith 1221eca87e8dSBarry Smith Not Collective 1222eca87e8dSBarry Smith 1223d382aafbSBarry Smith Input Parameter: 1224d382aafbSBarry Smith + memory1 - memory to free 1225d382aafbSBarry Smith . memory2 - 2nd memory to free 1226d382aafbSBarry Smith - memory3 - 3rd memory to free 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith Level: developer 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1233d382aafbSBarry Smith 1234d382aafbSBarry Smith Concepts: memory allocation 1235d382aafbSBarry Smith 1236d382aafbSBarry Smith M*/ 1237b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1238d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1239d382aafbSBarry Smith #else 1240e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1241d382aafbSBarry Smith #endif 1242d382aafbSBarry Smith 1243d382aafbSBarry Smith /*MC 1244d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1245d382aafbSBarry Smith 1246eca87e8dSBarry Smith Synopsis: 1247aaa7dc30SBarry Smith #include <petscsys.h> 1248eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1249eca87e8dSBarry Smith 1250eca87e8dSBarry Smith Not Collective 1251eca87e8dSBarry Smith 1252d382aafbSBarry Smith Input Parameter: 1253d382aafbSBarry Smith + m1 - memory to free 1254d382aafbSBarry Smith . m2 - 2nd memory to free 1255d382aafbSBarry Smith . m3 - 3rd memory to free 1256d382aafbSBarry Smith - m4 - 4th memory to free 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith Level: developer 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith Concepts: memory allocation 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith M*/ 1267b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1268d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1269d382aafbSBarry Smith #else 1270e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1271d382aafbSBarry Smith #endif 1272d382aafbSBarry Smith 1273d382aafbSBarry Smith /*MC 1274d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1275d382aafbSBarry Smith 1276eca87e8dSBarry Smith Synopsis: 1277aaa7dc30SBarry Smith #include <petscsys.h> 1278eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1279eca87e8dSBarry Smith 1280eca87e8dSBarry Smith Not Collective 1281eca87e8dSBarry Smith 1282d382aafbSBarry Smith Input Parameter: 1283d382aafbSBarry Smith + m1 - memory to free 1284d382aafbSBarry Smith . m2 - 2nd memory to free 1285d382aafbSBarry Smith . m3 - 3rd memory to free 1286d382aafbSBarry Smith . m4 - 4th memory to free 1287d382aafbSBarry Smith - m5 - 5th memory to free 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith Level: developer 1290d382aafbSBarry Smith 1291d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1294d382aafbSBarry Smith 1295d382aafbSBarry Smith Concepts: memory allocation 1296d382aafbSBarry Smith 1297d382aafbSBarry Smith M*/ 1298b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1299d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1300d382aafbSBarry Smith #else 1301e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1302e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1303d382aafbSBarry Smith #endif 1304d382aafbSBarry Smith 1305d382aafbSBarry Smith 1306d382aafbSBarry Smith /*MC 1307d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1308d382aafbSBarry Smith 1309eca87e8dSBarry Smith Synopsis: 1310aaa7dc30SBarry Smith #include <petscsys.h> 1311eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1312eca87e8dSBarry Smith 1313eca87e8dSBarry Smith Not Collective 1314eca87e8dSBarry Smith 1315d382aafbSBarry Smith Input Parameter: 1316d382aafbSBarry Smith + m1 - memory to free 1317d382aafbSBarry Smith . m2 - 2nd memory to free 1318d382aafbSBarry Smith . m3 - 3rd memory to free 1319d382aafbSBarry Smith . m4 - 4th memory to free 1320d382aafbSBarry Smith . m5 - 5th memory to free 1321d382aafbSBarry Smith - m6 - 6th memory to free 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith 1324d382aafbSBarry Smith Level: developer 1325d382aafbSBarry Smith 1326d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1327d382aafbSBarry Smith 1328d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith Concepts: memory allocation 1331d382aafbSBarry Smith 1332d382aafbSBarry Smith M*/ 1333b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1334d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1335d382aafbSBarry Smith #else 1336e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1337e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1338e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1339d382aafbSBarry Smith #endif 1340d382aafbSBarry Smith 1341d382aafbSBarry Smith /*MC 1342d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1343d382aafbSBarry Smith 1344eca87e8dSBarry Smith Synopsis: 1345aaa7dc30SBarry Smith #include <petscsys.h> 1346eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1347eca87e8dSBarry Smith 1348eca87e8dSBarry Smith Not Collective 1349eca87e8dSBarry Smith 1350d382aafbSBarry Smith Input Parameter: 1351d382aafbSBarry Smith + m1 - memory to free 1352d382aafbSBarry Smith . m2 - 2nd memory to free 1353d382aafbSBarry Smith . m3 - 3rd memory to free 1354d382aafbSBarry Smith . m4 - 4th memory to free 1355d382aafbSBarry Smith . m5 - 5th memory to free 1356d382aafbSBarry Smith . m6 - 6th memory to free 1357d382aafbSBarry Smith - m7 - 7th memory to free 1358d382aafbSBarry Smith 1359d382aafbSBarry Smith 1360d382aafbSBarry Smith Level: developer 1361d382aafbSBarry Smith 1362d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1365d382aafbSBarry Smith PetscMalloc7() 1366d382aafbSBarry Smith 1367d382aafbSBarry Smith Concepts: memory allocation 1368d382aafbSBarry Smith 1369d382aafbSBarry Smith M*/ 1370b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1371d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1372d382aafbSBarry Smith #else 1373e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1374e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 137506c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1376e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1377d382aafbSBarry Smith #endif 1378d382aafbSBarry Smith 1379efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1380efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1381efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1383d382aafbSBarry Smith 1384d382aafbSBarry Smith /* 1385a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1386a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1387a5057860SBarry Smith timing etc. 1388a5057860SBarry Smith */ 1389a5057860SBarry Smith typedef double PetscLogDouble; 1390a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1391a5057860SBarry Smith 1392a5057860SBarry Smith /* 139366d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1394d382aafbSBarry Smith */ 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 14000acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1401efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1403574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1405d382aafbSBarry Smith 1406d382aafbSBarry Smith /*E 1407d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1408d382aafbSBarry Smith 1409d382aafbSBarry Smith Level: beginner 1410d382aafbSBarry Smith 1411d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1412d382aafbSBarry Smith 1413d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1414d382aafbSBarry Smith PetscDataTypeGetSize() 1415d382aafbSBarry Smith 1416d382aafbSBarry Smith E*/ 1417d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1418*99a4b90dSDave May PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12, PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14196a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1420d382aafbSBarry Smith 1421d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1422d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1423d382aafbSBarry Smith #else 1424ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1425d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 142659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142759a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1428d382aafbSBarry Smith #else 1429d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1430d382aafbSBarry Smith #endif 1431d382aafbSBarry Smith #endif 1432ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1433d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 143459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 143559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1436d382aafbSBarry Smith #else 1437d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1438d382aafbSBarry Smith #endif 1439d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1440d382aafbSBarry Smith 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14448e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1445d382aafbSBarry Smith 1446d382aafbSBarry Smith /* 1447d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1448d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1449d382aafbSBarry Smith functionality and/or error checking. 1450d382aafbSBarry Smith */ 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1455d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14672f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14722c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 147547340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14766fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14776991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14786991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1479014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1480d382aafbSBarry Smith 1481573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1482573b0fb4SBarry Smith 1483d382aafbSBarry Smith /*S 1484d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1485d382aafbSBarry Smith 1486d382aafbSBarry Smith Level: intermediate 1487d382aafbSBarry Smith 1488d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1489d382aafbSBarry Smith S*/ 1490d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1491d382aafbSBarry Smith 1492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1495d382aafbSBarry Smith 1496a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1497a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1498a53986e1SJed Brown 1499d382aafbSBarry Smith /* 1500d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1501d382aafbSBarry Smith */ 1502014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 15037c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1504014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15052414b3c7SJed Brown #else 15062414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15072414b3c7SJed Brown #endif 15082414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1509014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1510014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1511d9822059SBarry Smith #else 1512d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1513d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1514d9822059SBarry Smith #endif 1515014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1516d382aafbSBarry Smith 1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1519eb3f98d2SBarry Smith 1520d382aafbSBarry Smith /*S 1521d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1522d382aafbSBarry Smith 1523d382aafbSBarry Smith Level: beginner 1524d382aafbSBarry Smith 15252981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1526d382aafbSBarry Smith 15272b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1528d382aafbSBarry Smith S*/ 1529d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1530d382aafbSBarry Smith 1531270bf2e7SJed Brown /*MC 1532127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1533127c8a3bSJed Brown 1534127c8a3bSJed Brown Level: developer 1535127c8a3bSJed Brown 1536127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1537127c8a3bSJed Brown 1538127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1539127c8a3bSJed Brown M*/ 1540127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1541127c8a3bSJed Brown 1542127c8a3bSJed Brown /*MC 1543270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1544270bf2e7SJed Brown 1545270bf2e7SJed Brown Level: developer 1546270bf2e7SJed Brown 1547270bf2e7SJed Brown Notes: 1548270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1549270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1550270bf2e7SJed Brown 15518dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1552270bf2e7SJed Brown M*/ 1553270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1554270bf2e7SJed Brown 1555d382aafbSBarry Smith /*S 1556140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1557d382aafbSBarry Smith by string name 1558d382aafbSBarry Smith 1559d382aafbSBarry Smith Level: advanced 1560d382aafbSBarry Smith 1561140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1562d382aafbSBarry Smith S*/ 1563140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1564d382aafbSBarry Smith 1565d382aafbSBarry Smith /*E 1566d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1567d382aafbSBarry Smith 1568d382aafbSBarry Smith Level: beginner 1569d382aafbSBarry Smith 15701cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15711cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15721cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15731cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15741cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1575d382aafbSBarry Smith 1576d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1577d382aafbSBarry Smith E*/ 1578d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1579d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1580d6a4318aSJed Brown 1581639ff905SBarry Smith /* 1582639ff905SBarry Smith Defines PETSc error handling. 1583639ff905SBarry Smith */ 1584639ff905SBarry Smith #include <petscerror.h> 1585d382aafbSBarry Smith 15860700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1587014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1588014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1590d382aafbSBarry Smith 1591d382aafbSBarry Smith /* 1592d382aafbSBarry Smith Routines that get memory usage information from the OS 1593d382aafbSBarry Smith */ 1594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1597b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1598d382aafbSBarry Smith 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1601d382aafbSBarry Smith 1602d382aafbSBarry Smith /* 1603d382aafbSBarry Smith Initialization of PETSc 1604d382aafbSBarry Smith */ 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1615d382aafbSBarry Smith 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1617607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1618d382aafbSBarry Smith 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1623d382aafbSBarry Smith 1624d382aafbSBarry Smith /* 1625d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16262981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1627d382aafbSBarry Smith */ 1628638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1629638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1630638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1631d382aafbSBarry Smith 1632d382aafbSBarry Smith /* 1633d382aafbSBarry Smith Functions that can act on any PETSc object. 1634d382aafbSBarry Smith */ 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1654bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1655bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1659d382aafbSBarry Smith 1660665c2dedSJed Brown #include <petscviewertypes.h> 1661639ff905SBarry Smith #include <petscoptions.h> 1662639ff905SBarry Smith 16630633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16640633abcbSJed Brown 1665639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1666c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1667dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1668639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16690005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16700005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1678685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1684d382aafbSBarry Smith 1685e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16867aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1687e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1688e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1689e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1690e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1691e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1692e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1693e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1694e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1695e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 169615681b3cSBarry Smith 1697ec7429eaSBarry Smith #else 16987aab2a10SBarry Smith #define PetscSAWsBlock() 0 1699e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1700e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1701e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1702e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1703e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1704e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1705e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1706e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1707e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 170815681b3cSBarry Smith 1709ec7429eaSBarry Smith #endif 1710b90c6cbeSBarry Smith 17117d5d4d99SBarry Smith typedef void* PetscDLHandle; 1712e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 171382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171482b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171582b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17167d5d4d99SBarry Smith 17175fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1718a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17195fe58b6fSBarry Smith #endif 17207eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1721a64a8e02SBarry Smith 1722d382aafbSBarry Smith /*S 1723140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1724d382aafbSBarry Smith 17251d0fab5eSBarry Smith Level: developer 1726d382aafbSBarry Smith 17271d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17281d0fab5eSBarry Smith 1729140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1730d382aafbSBarry Smith S*/ 1731140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1732d382aafbSBarry Smith 1733140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1734140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1735140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1736140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1737140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1738140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1739d382aafbSBarry Smith 1740d382aafbSBarry Smith /* 1741503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1742d382aafbSBarry Smith link libraries that will be loaded as needed. 1743d382aafbSBarry Smith */ 1744a240a19fSJed Brown 1745a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1746a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1747140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17481c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17491c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1750140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1751140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1752140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1753140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1754d382aafbSBarry Smith 1755d382aafbSBarry Smith /*S 1756d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1757d382aafbSBarry Smith 1758d382aafbSBarry Smith Level: advanced 1759d382aafbSBarry Smith 1760d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1761d382aafbSBarry Smith S*/ 1762d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1763014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1771d382aafbSBarry Smith 1772d382aafbSBarry Smith /* 1773d382aafbSBarry Smith Useful utility routines 1774d382aafbSBarry Smith */ 1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1781d382aafbSBarry Smith 1782503cfb0cSBarry Smith /* 1783ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1784503cfb0cSBarry Smith 1785503cfb0cSBarry Smith Notes: This is useful in cases like 1786503cfb0cSBarry Smith $ int *a; 1787ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17881cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1789503cfb0cSBarry Smith */ 1790d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1791503cfb0cSBarry Smith 1792d382aafbSBarry Smith /*MC 1793d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1794d382aafbSBarry Smith 1795d382aafbSBarry Smith Synopsis: 1796aaa7dc30SBarry Smith #include <petscsys.h> 1797d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1798d382aafbSBarry Smith 1799eca87e8dSBarry Smith Not Collective 1800eca87e8dSBarry Smith 1801d382aafbSBarry Smith Input Parameters: 1802d382aafbSBarry Smith . format - the usual printf() format string 1803d382aafbSBarry Smith 1804d382aafbSBarry Smith Level: developer 1805d382aafbSBarry Smith 1806d382aafbSBarry Smith Fortran Note: 1807d382aafbSBarry Smith This routine is not supported in Fortran. 1808d382aafbSBarry Smith 1809d382aafbSBarry Smith Concepts: help messages^printing 1810d382aafbSBarry Smith Concepts: printing^help messages 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1813d382aafbSBarry Smith M*/ 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1815d382aafbSBarry Smith 1816fcfd50ebSBarry Smith /* 1817fcfd50ebSBarry Smith Defines PETSc profiling. 1818fcfd50ebSBarry Smith */ 18192c8e378dSBarry Smith #include <petsclog.h> 1820fcfd50ebSBarry Smith 1821fcfd50ebSBarry Smith /* 1822fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1823fcfd50ebSBarry Smith */ 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1831fcfd50ebSBarry Smith 1832fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1833fcfd50ebSBarry Smith #include <stdarg.h> 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1837fcfd50ebSBarry Smith 1838fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1840fcfd50ebSBarry Smith #endif 1841fcfd50ebSBarry Smith 1842f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1843f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1844f1d7fe2eSBarry Smith #endif 1845f1d7fe2eSBarry Smith 1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1849d382aafbSBarry Smith 1850d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 185296a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 185374ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1854d382aafbSBarry Smith #endif 1855d382aafbSBarry Smith 1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1857014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18580ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1863d382aafbSBarry Smith 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1865d382aafbSBarry Smith 1866d382aafbSBarry Smith /*S 1867d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1868d382aafbSBarry Smith 1869d382aafbSBarry Smith Level: advanced 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1872d382aafbSBarry Smith S*/ 1873014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1874d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1875014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1876014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1877014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1880d382aafbSBarry Smith 1881d382aafbSBarry Smith /* 1882d382aafbSBarry Smith For use in debuggers 1883d382aafbSBarry Smith */ 1884014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1885014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1886014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1887014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1888014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1889d382aafbSBarry Smith 1890a663daf8SBarry Smith #include <stddef.h> 1891a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1892d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1893d382aafbSBarry Smith #include <stdlib.h> 1894d382aafbSBarry Smith #endif 18956c7e564aSBarry Smith 18964a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1897d382aafbSBarry Smith #include <xmmintrin.h> 1898d382aafbSBarry Smith #endif 1899d382aafbSBarry Smith 1900fcfd50ebSBarry Smith #undef __FUNCT__ 1901fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1902d382aafbSBarry Smith /*@C 1903d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1904d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1905d382aafbSBarry Smith PetscMemmove() in that case. 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith Not Collective 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith Input Parameters: 1910d382aafbSBarry Smith + b - pointer to initial memory space 1911d382aafbSBarry Smith - n - length (in bytes) of space to copy 1912d382aafbSBarry Smith 1913d382aafbSBarry Smith Output Parameter: 1914d382aafbSBarry Smith . a - pointer to copy space 1915d382aafbSBarry Smith 1916d382aafbSBarry Smith Level: intermediate 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith Compile Option: 1919d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1920d382aafbSBarry Smith for memory copies on double precision values. 1921d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1922d382aafbSBarry Smith for memory copies on double precision values. 1923d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1924d382aafbSBarry Smith for memory copies on double precision values. 1925d382aafbSBarry Smith 1926d382aafbSBarry Smith Note: 1927d382aafbSBarry Smith This routine is analogous to memcpy(). 1928d382aafbSBarry Smith 1929503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1930503cfb0cSBarry Smith 1931d382aafbSBarry Smith Concepts: memory^copying 1932d382aafbSBarry Smith Concepts: copying^memory 1933d382aafbSBarry Smith 1934d382aafbSBarry Smith .seealso: PetscMemmove() 1935d382aafbSBarry Smith 1936d382aafbSBarry Smith @*/ 19377087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1938d382aafbSBarry Smith { 1939d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1940c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1941c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1942a7e36092SMatthew G Knepley PetscFunctionBegin; 1943e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1944e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1945a7e36092SMatthew G Knepley #else 1946d382aafbSBarry Smith PetscFunctionBegin; 1947a7e36092SMatthew G Knepley #endif 1948a47a537aSLisandro Dalcin if (a != b && n > 0) { 1949d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1950e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1951d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1952d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1953d382aafbSBarry Smith #endif 1954d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1955c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1956d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1957d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1958c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1959c5df96a5SBarry Smith PetscErrorCode ierr; 1960c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19618b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1962d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1963d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1964d382aafbSBarry Smith #else 1965d382aafbSBarry Smith size_t i; 1966d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1967d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1968d382aafbSBarry Smith #endif 1969d382aafbSBarry Smith } else { 1970d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1971d382aafbSBarry Smith } 1972d382aafbSBarry Smith #else 1973d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1974d382aafbSBarry Smith #endif 1975d382aafbSBarry Smith } 1976d382aafbSBarry Smith PetscFunctionReturn(0); 1977d382aafbSBarry Smith } 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith /*@C 1980d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1981d382aafbSBarry Smith 1982d382aafbSBarry Smith Not Collective 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith Input Parameters: 1985d382aafbSBarry Smith + a - pointer to beginning memory location 1986d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1987d382aafbSBarry Smith 1988d382aafbSBarry Smith Level: intermediate 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith Compile Option: 1991d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1992d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1993d382aafbSBarry Smith 1994503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1995503cfb0cSBarry Smith 1996d382aafbSBarry Smith Concepts: memory^zeroing 1997d382aafbSBarry Smith Concepts: zeroing^memory 1998d382aafbSBarry Smith 1999d382aafbSBarry Smith .seealso: PetscMemcpy() 2000d382aafbSBarry Smith @*/ 20017087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 2002d382aafbSBarry Smith { 2003d382aafbSBarry Smith if (n > 0) { 2004d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2005e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2006d382aafbSBarry Smith #endif 2007d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2008d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2009d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2010d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2011d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2012d382aafbSBarry Smith } else { 2013d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2014d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2015d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2016d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2017d382aafbSBarry Smith } else { 2018d382aafbSBarry Smith #endif 2019d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2020d382aafbSBarry Smith bzero((char *)a,n); 2021d382aafbSBarry Smith #else 2022d382aafbSBarry Smith memset((char*)a,0,n); 2023d382aafbSBarry Smith #endif 2024d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2025d382aafbSBarry Smith } 2026d382aafbSBarry Smith #endif 2027d382aafbSBarry Smith } 2028d382aafbSBarry Smith return 0; 2029d382aafbSBarry Smith } 2030d382aafbSBarry Smith 2031d382aafbSBarry Smith /*MC 2032d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2033d382aafbSBarry Smith 2034eca87e8dSBarry Smith Synopsis: 2035aaa7dc30SBarry Smith #include <petscsys.h> 2036eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2037eca87e8dSBarry Smith 2038d382aafbSBarry Smith Not Collective 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith Input Parameters: 2041d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2042d382aafbSBarry Smith . n - number of elements to fetch 2043d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 204450d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith Level: developer 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith Notes: 2049d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2050d382aafbSBarry Smith 205150d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 205250d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 205350d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 205463cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 205563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 205663cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2059d382aafbSBarry Smith address). 2060d382aafbSBarry Smith 2061d382aafbSBarry Smith Concepts: memory 2062d382aafbSBarry Smith M*/ 2063d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2064d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2065d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2066d382aafbSBarry Smith } while (0) 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith /* 2069d382aafbSBarry Smith Determine if some of the kernel computation routines use 2070d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2071d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2072d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2073e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2074d382aafbSBarry Smith */ 2075d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2078d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 20815a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20825a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2086d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2090d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2094d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2095d382aafbSBarry Smith #endif 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2098d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2099d382aafbSBarry Smith #endif 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2102d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2106d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2110d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2111d382aafbSBarry Smith #endif 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2114d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2115d382aafbSBarry Smith #endif 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2118d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2122d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2123d382aafbSBarry Smith #endif 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2126d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2127d382aafbSBarry Smith #endif 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2130d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2131d382aafbSBarry Smith #endif 2132d382aafbSBarry Smith 2133d382aafbSBarry Smith #endif 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith /* 2136d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2137d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2138d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2139d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2140d382aafbSBarry Smith ugly extern "C" {} wrappers. 2141d382aafbSBarry Smith */ 2142d382aafbSBarry Smith #if defined(__cplusplus) 2143d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2144d382aafbSBarry Smith #define EXTERN_C_END } 2145d382aafbSBarry Smith #else 2146d382aafbSBarry Smith #define EXTERN_C_BEGIN 2147d382aafbSBarry Smith #define EXTERN_C_END 2148d382aafbSBarry Smith #endif 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith /*MC 2153d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2154d382aafbSBarry Smith communication 2155d382aafbSBarry Smith 2156d382aafbSBarry Smith Level: beginner 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2161d382aafbSBarry Smith M*/ 2162d382aafbSBarry Smith 2163d382aafbSBarry Smith /*MC 2164d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2165d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 21661cc8b206SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128 2167d382aafbSBarry Smith 2168d382aafbSBarry Smith Level: beginner 2169d382aafbSBarry Smith 21701cc8b206SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL 2171d382aafbSBarry Smith M*/ 2172d382aafbSBarry Smith 2173d382aafbSBarry Smith /*MC 21748619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21758619c96cSJed Brown 21768619c96cSJed Brown Synopsis: 21778619c96cSJed Brown #include <petscsys.h> 21788619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21798619c96cSJed Brown 21808619c96cSJed Brown Level: beginner 21818619c96cSJed Brown 21828619c96cSJed Brown Note: 21838cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21848619c96cSJed Brown 21858619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21868619c96cSJed Brown M*/ 21878619c96cSJed Brown 21888619c96cSJed Brown /*MC 2189d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith Level: beginner 2192d382aafbSBarry Smith 21931cc8b206SBarry Smith .seealso: PetscScalar 2194d382aafbSBarry Smith M*/ 2195d382aafbSBarry Smith 2196d382aafbSBarry Smith /*MC 2197d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith Level: beginner 2200d382aafbSBarry Smith 2201d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2202d382aafbSBarry Smith pass this value 2203d382aafbSBarry Smith 22041cc8b206SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT 2205d382aafbSBarry Smith M*/ 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2208d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2209014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2211d382aafbSBarry Smith #else 2212d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2213d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2214d382aafbSBarry Smith #endif 2215d382aafbSBarry Smith #endif 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2218d382aafbSBarry Smith 2219d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2220d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2221d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2222d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2223d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2224d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2225d382aafbSBarry Smith 2226c5df96a5SBarry Smith #undef __FUNCT__ 2227c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 222861b0d812SBarry Smith /*@C 222961b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 223061b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 223161b0d812SBarry Smith 223261b0d812SBarry Smith Not Collective 223361b0d812SBarry Smith 223461b0d812SBarry Smith Input Parameter: 223561b0d812SBarry Smith . a - the PetscInt value 223661b0d812SBarry Smith 223761b0d812SBarry Smith Output Parameter: 223861b0d812SBarry Smith . b - the resulting PetscBLASInt value 223961b0d812SBarry Smith 224061b0d812SBarry Smith Level: advanced 224161b0d812SBarry Smith 224261b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 224361b0d812SBarry Smith @*/ 2244c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2245c5df96a5SBarry Smith { 2246c5df96a5SBarry Smith PetscFunctionBegin; 2247ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2248c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2249c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2250c5df96a5SBarry Smith #endif 2251c5df96a5SBarry Smith PetscFunctionReturn(0); 2252c5df96a5SBarry Smith } 2253c5df96a5SBarry Smith 22544dc2109aSBarry Smith #undef __FUNCT__ 22554dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 225661b0d812SBarry Smith /*@C 225761b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 225861b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 225961b0d812SBarry Smith 226061b0d812SBarry Smith Not Collective 226161b0d812SBarry Smith 226261b0d812SBarry Smith Input Parameter: 226361b0d812SBarry Smith . a - the PetscInt value 226461b0d812SBarry Smith 226561b0d812SBarry Smith Output Parameter: 226661b0d812SBarry Smith . b - the resulting PetscMPIInt value 226761b0d812SBarry Smith 226861b0d812SBarry Smith Level: advanced 226961b0d812SBarry Smith 227061b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 227161b0d812SBarry Smith @*/ 22724dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22734dc2109aSBarry Smith { 22744dc2109aSBarry Smith PetscFunctionBegin; 2275ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22764dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22774dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22784dc2109aSBarry Smith #endif 22794dc2109aSBarry Smith PetscFunctionReturn(0); 22804dc2109aSBarry Smith } 22814dc2109aSBarry Smith 22822f18eb33SBarry Smith #define PetscIntMult64bit(a,b) ((Petsc64bitInt)(a))*((Petsc64bitInt)(b)) 22832f18eb33SBarry Smith 22842f18eb33SBarry Smith #undef __FUNCT__ 22852f18eb33SBarry Smith #define __FUNCT__ "PetscRealIntMultTruncate" 22862f18eb33SBarry Smith /*@C 22872f18eb33SBarry Smith 22882f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22892f18eb33SBarry Smith 22902f18eb33SBarry Smith Not Collective 22912f18eb33SBarry Smith 22922f18eb33SBarry Smith Input Parameter: 22932f18eb33SBarry Smith + a - the PetscReal value 22942f18eb33SBarry Smith - b - the second value 22952f18eb33SBarry Smith 22962f18eb33SBarry Smith Output Parameter: 22972f18eb33SBarry Smith . c - the result as a PetscInt value 22982f18eb33SBarry Smith 22992f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 23002f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23012f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23022f18eb33SBarry Smith 23032f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23042f18eb33SBarry Smith 23052f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23062f18eb33SBarry Smith 23072f18eb33SBarry Smith Level: advanced 23082f18eb33SBarry Smith 23092f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23102f18eb33SBarry Smith @*/ 23112f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23122f18eb33SBarry Smith { 23132f18eb33SBarry Smith Petsc64bitInt r; 23142f18eb33SBarry Smith 23152f18eb33SBarry Smith r = (Petsc64bitInt) (a*b); 23162f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23172f18eb33SBarry Smith return (PetscInt) r; 23182f18eb33SBarry Smith } 23192f18eb33SBarry Smith 23202f18eb33SBarry Smith #undef __FUNCT__ 23212f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultTruncate" 23222f18eb33SBarry Smith /*@C 23232f18eb33SBarry Smith 23242f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23252f18eb33SBarry Smith 23262f18eb33SBarry Smith Not Collective 23272f18eb33SBarry Smith 23282f18eb33SBarry Smith Input Parameter: 23292f18eb33SBarry Smith + a - the PetscInt value 23302f18eb33SBarry Smith - b - the second value 23312f18eb33SBarry Smith 23322f18eb33SBarry Smith Output Parameter: 23332f18eb33SBarry Smith . c - the result as a PetscInt value 23342f18eb33SBarry Smith 23352f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 23362f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23372f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23382f18eb33SBarry Smith 23392f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23402f18eb33SBarry Smith 23412f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23422f18eb33SBarry Smith 23432f18eb33SBarry Smith Level: advanced 23442f18eb33SBarry Smith 23452f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23462f18eb33SBarry Smith @*/ 23472f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23482f18eb33SBarry Smith { 23492f18eb33SBarry Smith Petsc64bitInt r; 23502f18eb33SBarry Smith 23512f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 23522f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23532f18eb33SBarry Smith return (PetscInt) r; 23542f18eb33SBarry Smith } 23552f18eb33SBarry Smith 23562f18eb33SBarry Smith #undef __FUNCT__ 2357f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumTruncate" 2358f91af8c7SBarry Smith /*@C 2359f91af8c7SBarry Smith 2360f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2361f91af8c7SBarry Smith 2362f91af8c7SBarry Smith Not Collective 2363f91af8c7SBarry Smith 2364f91af8c7SBarry Smith Input Parameter: 2365f91af8c7SBarry Smith + a - the PetscInt value 2366f91af8c7SBarry Smith - b - the second value 2367f91af8c7SBarry Smith 2368f91af8c7SBarry Smith Output Parameter: 2369f91af8c7SBarry Smith . c - the result as a PetscInt value 2370f91af8c7SBarry Smith 2371f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 2372f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2373f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2374f91af8c7SBarry Smith 2375f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2376f91af8c7SBarry Smith 2377f91af8c7SBarry Smith Level: advanced 2378f91af8c7SBarry Smith 2379f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2380f91af8c7SBarry Smith @*/ 2381f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2382f91af8c7SBarry Smith { 2383f91af8c7SBarry Smith Petsc64bitInt r; 2384f91af8c7SBarry Smith 2385f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2386f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2387f91af8c7SBarry Smith return (PetscInt) r; 2388f91af8c7SBarry Smith } 2389f91af8c7SBarry Smith 2390f91af8c7SBarry Smith #undef __FUNCT__ 23912f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultError" 23922f18eb33SBarry Smith /*@C 23932f18eb33SBarry Smith 23942f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23952f18eb33SBarry Smith 23962f18eb33SBarry Smith Not Collective 23972f18eb33SBarry Smith 23982f18eb33SBarry Smith Input Parameter: 23992f18eb33SBarry Smith + a - the PetscInt value 24002f18eb33SBarry Smith - b - the second value 24012f18eb33SBarry Smith 24022f18eb33SBarry Smith Output Parameter:ma 24032f18eb33SBarry Smith . c - the result as a PetscInt value 24042f18eb33SBarry Smith 24052f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 24062f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24072f18eb33SBarry Smith 24082f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 24092f18eb33SBarry Smith 24102f18eb33SBarry Smith Level: advanced 24112f18eb33SBarry Smith 24122f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 24132f18eb33SBarry Smith @*/ 24142f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24152f18eb33SBarry Smith { 24162f18eb33SBarry Smith Petsc64bitInt r; 24172f18eb33SBarry Smith 24182f18eb33SBarry Smith PetscFunctionBegin; 24192f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 24202f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24212f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24222f18eb33SBarry Smith #endif 2423f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2424f91af8c7SBarry Smith PetscFunctionReturn(0); 2425f91af8c7SBarry Smith } 2426f91af8c7SBarry Smith 2427f91af8c7SBarry Smith #undef __FUNCT__ 2428f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumError" 2429f91af8c7SBarry Smith /*@C 2430f91af8c7SBarry Smith 2431f91af8c7SBarry Smith PetscIntSumError - Computes the product of two positive PetscInt and generates an error with overflow. 2432f91af8c7SBarry Smith 2433f91af8c7SBarry Smith Not Collective 2434f91af8c7SBarry Smith 2435f91af8c7SBarry Smith Input Parameter: 2436f91af8c7SBarry Smith + a - the PetscInt value 2437f91af8c7SBarry Smith - b - the second value 2438f91af8c7SBarry Smith 2439f91af8c7SBarry Smith Output Parameter:ma 2440f91af8c7SBarry Smith . c - the result as a PetscInt value 2441f91af8c7SBarry Smith 2442f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 2443f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2444f91af8c7SBarry Smith 2445f91af8c7SBarry Smith Level: advanced 2446f91af8c7SBarry Smith 2447f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2448f91af8c7SBarry Smith @*/ 2449f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2450f91af8c7SBarry Smith { 2451f91af8c7SBarry Smith Petsc64bitInt r; 2452f91af8c7SBarry Smith 2453f91af8c7SBarry Smith PetscFunctionBegin; 2454f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2455f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2456f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2457f91af8c7SBarry Smith #endif 2458f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24592f18eb33SBarry Smith PetscFunctionReturn(0); 24602f18eb33SBarry Smith } 2461c5df96a5SBarry Smith 2462d382aafbSBarry Smith /* 24632981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2464d382aafbSBarry Smith */ 2465d382aafbSBarry Smith #if defined(hz) 2466d382aafbSBarry Smith #undef hz 2467d382aafbSBarry Smith #endif 2468d382aafbSBarry Smith 2469d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2470d382aafbSBarry Smith 2471d382aafbSBarry Smith 2472d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2473d382aafbSBarry Smith #include <limits.h> 2474d382aafbSBarry Smith #endif 2475d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2476d382aafbSBarry Smith #include <sys/param.h> 2477d382aafbSBarry Smith #endif 2478d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2479d382aafbSBarry Smith #include <sys/types.h> 2480d382aafbSBarry Smith #endif 2481d382aafbSBarry Smith #if defined(MAXPATHLEN) 2482d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2483d382aafbSBarry Smith #elif defined(MAX_PATH) 2484d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2485d382aafbSBarry Smith #elif defined(_MAX_PATH) 2486d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2487d382aafbSBarry Smith #else 2488d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2489d382aafbSBarry Smith #endif 2490d382aafbSBarry Smith 2491d382aafbSBarry Smith /*MC 2492d382aafbSBarry Smith 2493d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2494d382aafbSBarry Smith 2495d382aafbSBarry Smith $ 1) classic Fortran 77 style 2496af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2497d382aafbSBarry Smith $ XXX variablename 2498d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2499d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2500d382aafbSBarry Smith $ 2501d382aafbSBarry Smith $ 2) classic Fortran 90 style 2502af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2503af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2504d382aafbSBarry Smith $ XXX variablename 2505d382aafbSBarry Smith $ 2506d382aafbSBarry Smith $ 3) Using Fortran modules 2507af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2508d382aafbSBarry Smith $ use petscXXXX 2509d382aafbSBarry Smith $ XXX variablename 2510d382aafbSBarry Smith $ 2511d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2512af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2513d382aafbSBarry Smith $ use petscXXXX 2514d382aafbSBarry Smith $ type(XXX) variablename 2515e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2516d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2517d382aafbSBarry Smith 2518d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2519d382aafbSBarry Smith 2520d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2521d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2522d382aafbSBarry Smith $ integer variablename 2523d382aafbSBarry Smith $ 2524d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2525d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2526d382aafbSBarry Smith 2527d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2528d382aafbSBarry Smith for only a few PETSc functions. 2529d382aafbSBarry Smith 2530d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2531d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2532d382aafbSBarry Smith you cannot have something like 2533d382aafbSBarry Smith $ PetscInt row,col 2534d382aafbSBarry Smith $ PetscScalar val 2535d382aafbSBarry Smith $ ... 2536d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2537d382aafbSBarry Smith You must instead have 2538d382aafbSBarry Smith $ PetscInt row(1),col(1) 2539d382aafbSBarry Smith $ PetscScalar val(1) 2540d382aafbSBarry Smith $ ... 2541d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2542d382aafbSBarry Smith 2543d382aafbSBarry Smith 2544d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2545d382aafbSBarry Smith 2546af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2547af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2548d382aafbSBarry Smith 2549af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2550af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2551af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2552d382aafbSBarry Smith 2553af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2554e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2555d382aafbSBarry Smith 2556af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2557d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2558d382aafbSBarry Smith 2559af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2560d382aafbSBarry Smith automatically by "make allfortranstubs". 2561d382aafbSBarry Smith 2562af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2563af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2564d382aafbSBarry Smith include their predecessors 2565d382aafbSBarry Smith 2566d382aafbSBarry Smith Level: beginner 2567d382aafbSBarry Smith 2568d382aafbSBarry Smith M*/ 2569d382aafbSBarry Smith 2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 257627710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2577d382aafbSBarry Smith 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 258060e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 258517d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 258617d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 258917df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2592745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 259721e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2598e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2599d382aafbSBarry Smith 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2602d382aafbSBarry Smith 260376bdecfbSBarry Smith /*J 2604d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2605d382aafbSBarry Smith 2606d382aafbSBarry Smith Level: beginner 2607d382aafbSBarry Smith 2608e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2609d382aafbSBarry Smith with the option --download-sprng 2610d382aafbSBarry Smith 26118f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 261276bdecfbSBarry Smith J*/ 261319fd82e9SBarry Smith typedef const char* PetscRandomType; 2614d382aafbSBarry Smith #define PETSCRAND "rand" 2615d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2616d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2617c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2618d382aafbSBarry Smith 2619d382aafbSBarry Smith /* Logging support */ 2620014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2621d382aafbSBarry Smith 2622607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2623d382aafbSBarry Smith 2624d382aafbSBarry Smith /*S 2625d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2626d382aafbSBarry Smith 2627d382aafbSBarry Smith Level: intermediate 2628d382aafbSBarry Smith 2629d382aafbSBarry Smith Concepts: random numbers 2630d382aafbSBarry Smith 2631d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2632d382aafbSBarry Smith S*/ 2633d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2634d382aafbSBarry Smith 2635d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2636140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2637d382aafbSBarry Smith 2638bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 263919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 264119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2642685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2644d382aafbSBarry Smith 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2654d382aafbSBarry Smith 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 266297540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 266397540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2664d382aafbSBarry Smith 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2676e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2677d382aafbSBarry Smith 2678d382aafbSBarry Smith /* 2679d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2680d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2681d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2682d382aafbSBarry Smith PetscBinarySeek(). 2683d382aafbSBarry Smith */ 2684d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2685d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2686d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2687d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2688d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2689d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2690d382aafbSBarry Smith 2691d382aafbSBarry Smith /*E 2692d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2693d382aafbSBarry Smith 2694d382aafbSBarry Smith Level: advanced 2695d382aafbSBarry Smith 2696d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2697d382aafbSBarry Smith E*/ 2698d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2702d382aafbSBarry Smith 2703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2706014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2708014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2709d382aafbSBarry Smith 2710014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2711014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2712014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2713014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2714014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2715cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2716cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2717d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2718d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2719d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2720d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27216afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27226afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27236afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27246afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27256afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2726d382aafbSBarry Smith 27276145cd65SJed Brown /*E 27286145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27296145cd65SJed Brown 27306145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27316145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27326145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27336145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27346145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27351654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27361654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27376145cd65SJed Brown 27386145cd65SJed Brown Level: developer 27396145cd65SJed Brown 27406145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27416145cd65SJed Brown E*/ 27426145cd65SJed Brown typedef enum { 27436145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27446145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27451654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 274612af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27476145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27486145cd65SJed Brown } PetscBuildTwoSidedType; 27496145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27506145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27516145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27526145cd65SJed Brown 2753014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2754d382aafbSBarry Smith 2755d382aafbSBarry Smith /*E 2756d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2757d382aafbSBarry Smith 2758d382aafbSBarry Smith Level: beginner 2759d382aafbSBarry Smith 2760d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2761d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2762d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2763d382aafbSBarry Smith E*/ 27646fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2765d382aafbSBarry Smith 2766d382aafbSBarry Smith /*MC 2767d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2768d382aafbSBarry Smith 2769d382aafbSBarry Smith Level: beginner 2770d382aafbSBarry Smith 2771d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2772eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2773eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2774d382aafbSBarry Smith 2775d382aafbSBarry Smith M*/ 2776d382aafbSBarry Smith 2777d382aafbSBarry Smith /*MC 2778d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2779d382aafbSBarry Smith value into that location 2780d382aafbSBarry Smith 2781d382aafbSBarry Smith Level: beginner 2782d382aafbSBarry Smith 2783d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2784eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2785eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2786d382aafbSBarry Smith 2787d382aafbSBarry Smith M*/ 2788d382aafbSBarry Smith 2789d382aafbSBarry Smith /*MC 2790d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2791d382aafbSBarry Smith 2792d382aafbSBarry Smith Level: beginner 2793d382aafbSBarry Smith 2794d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2795d382aafbSBarry Smith 2796d382aafbSBarry Smith M*/ 2797d382aafbSBarry Smith 2798ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2799ce94432eSBarry Smith 280045487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 280145487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 280245487dadSJed Brown 2803d382aafbSBarry Smith /*S 2804306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2805306c2d5bSBarry Smith 2806306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2807306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 280836be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2809306c2d5bSBarry Smith 2810306c2d5bSBarry Smith Sample Usage: 2811306c2d5bSBarry Smith PetscSubcommCreate() 2812306c2d5bSBarry Smith PetscSubcommSetNumber() 2813306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2814306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2815306c2d5bSBarry Smith PetscSubcommDestroy() 2816d382aafbSBarry Smith 2817d382aafbSBarry Smith Level: advanced 2818d382aafbSBarry Smith 2819d382aafbSBarry Smith Concepts: communicator, create 2820306c2d5bSBarry Smith 2821306c2d5bSBarry Smith Notes: 2822306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2823306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2824306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2825306c2d5bSBarry Smith 2826306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2827306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2828306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2829306c2d5bSBarry Smith 2830306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2831306c2d5bSBarry Smith are performed. 2832306c2d5bSBarry Smith 2833306c2d5bSBarry Smith 2834306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2835306c2d5bSBarry Smith 2836d382aafbSBarry Smith S*/ 2837d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2838d382aafbSBarry Smith 2839d382aafbSBarry Smith struct _n_PetscSubcomm { 2840d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2841d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2842306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 284345487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 284445487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2845708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 284645487dadSJed Brown PetscSubcommType type; 2847e5acf8a4SHong Zhang char *subcommprefix; 2848d382aafbSBarry Smith }; 2849d382aafbSBarry Smith 2850c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2851306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 285236be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 285765d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2858053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2859f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2860e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2861d382aafbSBarry Smith 28620f453b92SJed Brown /*S 28630f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28640f453b92SJed Brown 28650f453b92SJed Brown Level: developer 28660f453b92SJed Brown 28670f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28680f453b92SJed Brown S*/ 28690f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 287013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28710f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 287213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2873137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2874137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2875137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 287613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 287713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28780f453b92SJed Brown 2879471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2880471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2881471ecdacSJed Brown * possible. */ 288235005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2883d382aafbSBarry Smith 2884268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 28851f817a21SBarry Smith #undef __FUNCT__ 28861f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 28871f817a21SBarry Smith /*@C 28881f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28891f817a21SBarry Smith 28901f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28911f817a21SBarry Smith 28921f817a21SBarry Smith Input Parameters: 28931f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28941f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28951f817a21SBarry Smith 2896850545d0SSatish Balay Level: intermediate 2897850545d0SSatish Balay 28981f817a21SBarry Smith Options Database: 28991f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 29001f817a21SBarry Smith @*/ 2901dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2902dff31646SBarry Smith { 2903dff31646SBarry Smith size_t len; 2904dff31646SBarry Smith char *vstring; 2905dff31646SBarry Smith PetscErrorCode ierr; 2906dff31646SBarry Smith 29071f817a21SBarry Smith PetscFunctionBegin; 29088d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2909dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 291035005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2911dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2912dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29131f817a21SBarry Smith PetscFunctionReturn(0); 2914dff31646SBarry Smith } 2915dff31646SBarry Smith 2916b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2917fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2918fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2919f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2920fe278a28SBarry Smith 2921f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2922f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2923b967cddfSBarry Smith 292404102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2925dff31646SBarry Smith 292668e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29275dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2928d382aafbSBarry Smith 2929b2566f29SBarry Smith 2930b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2931b2566f29SBarry Smith /* 2932b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2933b2566f29SBarry Smith */ 29348f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2935b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2936b2566f29SBarry Smith #else 2937b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2938b2566f29SBarry Smith #endif 2939b2566f29SBarry Smith 2940d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2941d382aafbSBarry Smith #undef __FUNCT__ 2942d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2943d382aafbSBarry Smith 2944d382aafbSBarry Smith #endif 2945