1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240fab38c73SJed Brown 241d382aafbSBarry Smith /*MC 242d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2433b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 244d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 245d382aafbSBarry Smith 246d382aafbSBarry Smith Level: intermediate 247d382aafbSBarry Smith 248d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 249d382aafbSBarry Smith M*/ 250fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 251fab38c73SJed Brown typedef int64_t Petsc64bitInt; 252fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 253f505b413SSatish Balay typedef long long Petsc64bitInt; 254f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 255236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 256236ed0a3SSatish Balay #else 257f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 258236ed0a3SSatish Balay #endif 259d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 260236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 26141860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 26268db2e82SFande Kong # define MPIU_INT MPI_LONG_LONG_INT 263fab38c73SJed Brown # else 264d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 265fab38c73SJed Brown # endif 266d382aafbSBarry Smith #else 267d382aafbSBarry Smith typedef int PetscInt; 268d382aafbSBarry Smith #define MPIU_INT MPI_INT 269d382aafbSBarry Smith #endif 270e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 271e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 272e56f5c9eSBarry Smith #else 273e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 274e56f5c9eSBarry Smith #endif 275236ed0a3SSatish Balay 276d382aafbSBarry Smith 277702bc34aSSatish Balay /*MC 278702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 279702bc34aSSatish Balay 280702bc34aSSatish Balay Level: intermediate 281702bc34aSSatish Balay 282702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 283702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 284702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 285702bc34aSSatish Balay 286c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2872981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 288702bc34aSSatish Balay 2892981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 290702bc34aSSatish Balay if you run ./configure with the option 291702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2922981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2932981ebdbSBarry Smith 2942981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2952981ebdbSBarry Smith 2962981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 297702bc34aSSatish Balay 298702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 299702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 300702bc34aSSatish Balay 3011cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 302702bc34aSSatish Balay 303702bc34aSSatish Balay M*/ 304702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 305702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 306702bc34aSSatish Balay #else 307702bc34aSSatish Balay typedef int PetscBLASInt; 308702bc34aSSatish Balay #endif 309702bc34aSSatish Balay 31058b60935SBarry Smith /*EC 31158b60935SBarry Smith 3122981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 31358b60935SBarry Smith 31458b60935SBarry Smith Level: advanced 31558b60935SBarry Smith 31658b60935SBarry Smith .seealso: PetscObjectSetPrecision() 31758b60935SBarry Smith E*/ 31858b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 319014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 32058b60935SBarry Smith 321503cfb0cSBarry Smith /* 322503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 323503cfb0cSBarry Smith */ 324d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 325adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 326d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 327adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 328d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 329adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 330d382aafbSBarry Smith #else 331d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 332d382aafbSBarry Smith #endif 333d382aafbSBarry Smith 334d382aafbSBarry Smith /* 335d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 336d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 337d382aafbSBarry Smith */ 338014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 339d382aafbSBarry Smith 340d382aafbSBarry Smith /* 341d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 342d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 343d382aafbSBarry Smith */ 344014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 345d382aafbSBarry Smith 346d382aafbSBarry Smith /*MC 347d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 348d382aafbSBarry Smith 349d382aafbSBarry Smith Synopsis: 350aaa7dc30SBarry Smith #include <petscsys.h> 351ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 352d382aafbSBarry Smith 353eca87e8dSBarry Smith Not Collective 354eca87e8dSBarry Smith 355d382aafbSBarry Smith Input Parameters: 356d382aafbSBarry Smith . cond - condition or expression 357d382aafbSBarry Smith 358d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 359d382aafbSBarry Smith branch is unlikely. 360d382aafbSBarry Smith 361d382aafbSBarry Smith Level: advanced 362d382aafbSBarry Smith 363d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 364d382aafbSBarry Smith M*/ 365d382aafbSBarry Smith 366d382aafbSBarry Smith /*MC 367d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 368d382aafbSBarry Smith 369d382aafbSBarry Smith Synopsis: 370aaa7dc30SBarry Smith #include <petscsys.h> 371ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 372d382aafbSBarry Smith 373eca87e8dSBarry Smith Not Collective 374eca87e8dSBarry Smith 375d382aafbSBarry Smith Input Parameters: 376d382aafbSBarry Smith . cond - condition or expression 377d382aafbSBarry Smith 378d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 379d382aafbSBarry Smith branch is likely. 380d382aafbSBarry Smith 381d382aafbSBarry Smith Level: advanced 382d382aafbSBarry Smith 383d382aafbSBarry Smith .seealso: PetscUnlikely() 384d382aafbSBarry Smith M*/ 385d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 386d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 387d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 388d382aafbSBarry Smith #else 389cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 390cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 391d382aafbSBarry Smith #endif 392d382aafbSBarry Smith 393d382aafbSBarry Smith /* 394d382aafbSBarry Smith Declare extern C stuff after including external header files 395d382aafbSBarry Smith */ 396d382aafbSBarry Smith 397d382aafbSBarry Smith 398d382aafbSBarry Smith /* 399d382aafbSBarry Smith Basic PETSc constants 400d382aafbSBarry Smith */ 401d382aafbSBarry Smith 402d382aafbSBarry Smith /*E 403ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 404d382aafbSBarry Smith 405d382aafbSBarry Smith Level: beginner 406d382aafbSBarry Smith 407ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 40834e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 40934e82e7dSBarry Smith 4101cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 411d382aafbSBarry Smith E*/ 412ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4136a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4145a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 41570b3c8c7SBarry Smith 4168b49ba18SBarry Smith /* 4178b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4188b49ba18SBarry Smith */ 4198b49ba18SBarry Smith #include <petscmath.h> 4208b49ba18SBarry Smith 42170b3c8c7SBarry Smith /*E 42270b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 42370b3c8c7SBarry Smith 42470b3c8c7SBarry Smith Level: beginner 42570b3c8c7SBarry Smith 42670b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42770b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 42870b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 42970b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43070b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 43170b3c8c7SBarry Smith 43270b3c8c7SBarry Smith E*/ 43370b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4346a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 435d382aafbSBarry Smith 436d382aafbSBarry Smith /*MC 437ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 438d382aafbSBarry Smith 439d382aafbSBarry Smith Level: beginner 440d382aafbSBarry Smith 441d382aafbSBarry Smith Note: Zero integer 442d382aafbSBarry Smith 443ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 444d382aafbSBarry Smith M*/ 445d382aafbSBarry Smith 446d382aafbSBarry Smith /*MC 447ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 448d382aafbSBarry Smith 449d382aafbSBarry Smith Level: beginner 450d382aafbSBarry Smith 451d382aafbSBarry Smith Note: Nonzero integer 452d382aafbSBarry Smith 453ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 454d382aafbSBarry Smith M*/ 455d382aafbSBarry Smith 456d382aafbSBarry Smith /*MC 4570298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 458d382aafbSBarry Smith 459d382aafbSBarry Smith Level: beginner 460d382aafbSBarry Smith 461d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 462d382aafbSBarry Smith some default 463d382aafbSBarry Smith 464d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 465503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 466d382aafbSBarry Smith 467d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 468d382aafbSBarry Smith 469d382aafbSBarry Smith M*/ 4703bcbec90SJed Brown #define PETSC_NULL NULL 471d382aafbSBarry Smith 472d382aafbSBarry Smith /*MC 4730298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 474d382aafbSBarry Smith 475d382aafbSBarry Smith Level: beginner 476d382aafbSBarry Smith 477d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 478d382aafbSBarry Smith some default 479d382aafbSBarry Smith 480d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 481d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 482d382aafbSBarry Smith 483d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 484d382aafbSBarry Smith 485d382aafbSBarry Smith M*/ 4860298fd71SBarry Smith #define PETSC_IGNORE NULL 487d382aafbSBarry Smith 488d382aafbSBarry Smith /*MC 489557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 490557d4da8SBarry Smith where you wish PETSc to use the default. 491557d4da8SBarry Smith 492557d4da8SBarry Smith Level: beginner 493557d4da8SBarry Smith 494557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 495557d4da8SBarry Smith 496557d4da8SBarry Smith M*/ 497557d4da8SBarry Smith #define PETSC_DECIDE -1 498557d4da8SBarry Smith 499557d4da8SBarry Smith /*MC 500d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 501d382aafbSBarry Smith where you wish PETSc to compute the required value. 502d382aafbSBarry Smith 503d382aafbSBarry Smith Level: beginner 504d382aafbSBarry Smith 505557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 506557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 507557d4da8SBarry Smith 5080298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 509d382aafbSBarry Smith 510d382aafbSBarry Smith M*/ 511d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 512d382aafbSBarry Smith 513d382aafbSBarry Smith /*MC 514557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 515557d4da8SBarry Smith where you wish PETSc to use the default. 516557d4da8SBarry Smith 517557d4da8SBarry Smith Level: beginner 518557d4da8SBarry Smith 5192d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 520557d4da8SBarry Smith 5210298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 522557d4da8SBarry Smith 523557d4da8SBarry Smith M*/ 524557d4da8SBarry Smith #define PETSC_DEFAULT -2 525557d4da8SBarry Smith 526557d4da8SBarry Smith /*MC 527d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 528d382aafbSBarry Smith all the processs that PETSc knows about. 529d382aafbSBarry Smith 530d382aafbSBarry Smith Level: beginner 531d382aafbSBarry Smith 532d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 533d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 534d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 535a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 536a990b902SBarry Smith 537a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 538a990b902SBarry Smith is called because it may not have a valid value yet. 539d382aafbSBarry Smith 540d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 541d382aafbSBarry Smith 542d382aafbSBarry Smith M*/ 543014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 544d382aafbSBarry Smith 545d382aafbSBarry Smith /*MC 546503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 547d382aafbSBarry Smith 548d382aafbSBarry Smith Level: beginner 549d382aafbSBarry Smith 550a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 551a990b902SBarry Smith 552d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 553d382aafbSBarry Smith 554d382aafbSBarry Smith M*/ 555d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 556d382aafbSBarry Smith 557d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 558014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 559014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 560014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5614cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 56282f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 563d382aafbSBarry Smith 564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 567d382aafbSBarry Smith 568d382aafbSBarry Smith /*MC 569854ce69bSBarry Smith PetscMalloc - Allocates memory, One should use PetscMalloc1() or PetscCalloc1() usually instead of this 570d382aafbSBarry Smith 571eca87e8dSBarry Smith Synopsis: 572aaa7dc30SBarry Smith #include <petscsys.h> 573eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 574eca87e8dSBarry Smith 575eca87e8dSBarry Smith Not Collective 576eca87e8dSBarry Smith 577d382aafbSBarry Smith Input Parameter: 578d382aafbSBarry Smith . m - number of bytes to allocate 579d382aafbSBarry Smith 580d382aafbSBarry Smith Output Parameter: 581d382aafbSBarry Smith . result - memory allocated 582d382aafbSBarry Smith 583d382aafbSBarry Smith Level: beginner 584d382aafbSBarry Smith 58549d7da52SJed Brown Notes: 58649d7da52SJed Brown Memory is always allocated at least double aligned 587d382aafbSBarry Smith 58849d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 589d382aafbSBarry Smith 590d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 591d382aafbSBarry Smith 592d382aafbSBarry Smith Concepts: memory allocation 593d382aafbSBarry Smith 594d382aafbSBarry Smith M*/ 59549d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 596d382aafbSBarry Smith 597d382aafbSBarry Smith /*MC 598503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 599d382aafbSBarry Smith 600d382aafbSBarry Smith Synopsis: 601aaa7dc30SBarry Smith #include <petscsys.h> 602d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 603d382aafbSBarry Smith 604eca87e8dSBarry Smith Not Collective 605eca87e8dSBarry Smith 606eca87e8dSBarry Smith Input Parameters: 607eca87e8dSBarry Smith . addr - address to align (any pointer type) 608eca87e8dSBarry Smith 609d382aafbSBarry Smith Level: developer 610d382aafbSBarry Smith 611d382aafbSBarry Smith .seealso: PetscMallocAlign() 612d382aafbSBarry Smith 613d382aafbSBarry Smith Concepts: memory allocation 614d382aafbSBarry Smith M*/ 615d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 616d382aafbSBarry Smith 617d382aafbSBarry Smith /*MC 618785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 619d382aafbSBarry Smith 620eca87e8dSBarry Smith Synopsis: 621aaa7dc30SBarry Smith #include <petscsys.h> 622785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 623785e854fSJed Brown 624785e854fSJed Brown Not Collective 625785e854fSJed Brown 626785e854fSJed Brown Input Parameter: 627785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 628785e854fSJed Brown 629785e854fSJed Brown Output Parameter: 630785e854fSJed Brown . r1 - memory allocated in first chunk 631785e854fSJed Brown 632785e854fSJed Brown Level: developer 633785e854fSJed Brown 6341795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 635785e854fSJed Brown 636785e854fSJed Brown Concepts: memory allocation 637785e854fSJed Brown 638785e854fSJed Brown M*/ 639f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 640785e854fSJed Brown 641785e854fSJed Brown /*MC 6421795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6431795a4d1SJed Brown 6441795a4d1SJed Brown Synopsis: 645aaa7dc30SBarry Smith #include <petscsys.h> 6461795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6471795a4d1SJed Brown 6481795a4d1SJed Brown Not Collective 6491795a4d1SJed Brown 6501795a4d1SJed Brown Input Parameter: 6511795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6521795a4d1SJed Brown 6531795a4d1SJed Brown Output Parameter: 6541795a4d1SJed Brown . r1 - memory allocated in first chunk 6551795a4d1SJed Brown 6561795a4d1SJed Brown Level: developer 6571795a4d1SJed Brown 6581795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6591795a4d1SJed Brown 6601795a4d1SJed Brown Concepts: memory allocation 6611795a4d1SJed Brown 6621795a4d1SJed Brown M*/ 6631795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6641795a4d1SJed Brown 6651795a4d1SJed Brown /*MC 666dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 667d382aafbSBarry Smith 668eca87e8dSBarry Smith Synopsis: 669aaa7dc30SBarry Smith #include <petscsys.h> 670dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 671eca87e8dSBarry Smith 672eca87e8dSBarry Smith Not Collective 673eca87e8dSBarry Smith 674d382aafbSBarry Smith Input Parameter: 675d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 676dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 677d382aafbSBarry Smith 678d382aafbSBarry Smith Output Parameter: 679d382aafbSBarry Smith + r1 - memory allocated in first chunk 680d382aafbSBarry Smith - r2 - memory allocated in second chunk 681d382aafbSBarry Smith 682d382aafbSBarry Smith Level: developer 683d382aafbSBarry Smith 6841795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 685d382aafbSBarry Smith 686d382aafbSBarry Smith Concepts: memory allocation 687d382aafbSBarry Smith 688d382aafbSBarry Smith M*/ 68920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6901d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 691d382aafbSBarry Smith #else 692ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 693ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6943589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 695d382aafbSBarry Smith #endif 696d382aafbSBarry Smith 697d382aafbSBarry Smith /*MC 6981795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 699d382aafbSBarry Smith 700eca87e8dSBarry Smith Synopsis: 701aaa7dc30SBarry Smith #include <petscsys.h> 7021795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 703eca87e8dSBarry Smith 704eca87e8dSBarry Smith Not Collective 705eca87e8dSBarry Smith 706d382aafbSBarry Smith Input Parameter: 707d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7081795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7091795a4d1SJed Brown 7101795a4d1SJed Brown Output Parameter: 7111795a4d1SJed Brown + r1 - memory allocated in first chunk 7121795a4d1SJed Brown - r2 - memory allocated in second chunk 7131795a4d1SJed Brown 7141795a4d1SJed Brown Level: developer 7151795a4d1SJed Brown 7161795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7171795a4d1SJed Brown 7181795a4d1SJed Brown Concepts: memory allocation 7191795a4d1SJed Brown M*/ 7201795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7211795a4d1SJed Brown 7221795a4d1SJed Brown /*MC 723dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 724d382aafbSBarry Smith 725d382aafbSBarry Smith Synopsis: 726aaa7dc30SBarry Smith #include <petscsys.h> 727dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 728d382aafbSBarry Smith 729d382aafbSBarry Smith Not Collective 730d382aafbSBarry Smith 731d382aafbSBarry Smith Input Parameter: 732d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 733d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 734dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 735d382aafbSBarry Smith 736d382aafbSBarry Smith Output Parameter: 737d382aafbSBarry Smith + r1 - memory allocated in first chunk 738d382aafbSBarry Smith . r2 - memory allocated in second chunk 739d382aafbSBarry Smith - r3 - memory allocated in third chunk 740d382aafbSBarry Smith 741d382aafbSBarry Smith Level: developer 742d382aafbSBarry Smith 7431795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 744d382aafbSBarry Smith 745d382aafbSBarry Smith Concepts: memory allocation 746d382aafbSBarry Smith 747d382aafbSBarry Smith M*/ 74820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7491d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 750d382aafbSBarry Smith #else 751ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 752278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7533589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 754d382aafbSBarry Smith #endif 755d382aafbSBarry Smith 756d382aafbSBarry Smith /*MC 7571795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 758d382aafbSBarry Smith 759eca87e8dSBarry Smith Synopsis: 760aaa7dc30SBarry Smith #include <petscsys.h> 7611795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 762eca87e8dSBarry Smith 763eca87e8dSBarry Smith Not Collective 764eca87e8dSBarry Smith 765d382aafbSBarry Smith Input Parameter: 766d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 767d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7681795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7691795a4d1SJed Brown 7701795a4d1SJed Brown Output Parameter: 7711795a4d1SJed Brown + r1 - memory allocated in first chunk 7721795a4d1SJed Brown . r2 - memory allocated in second chunk 7731795a4d1SJed Brown - r3 - memory allocated in third chunk 7741795a4d1SJed Brown 7751795a4d1SJed Brown Level: developer 7761795a4d1SJed Brown 7771795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7781795a4d1SJed Brown 7791795a4d1SJed Brown Concepts: memory allocation 7801795a4d1SJed Brown M*/ 7811795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7821795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7831795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7841795a4d1SJed Brown 7851795a4d1SJed Brown /*MC 786dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 787d382aafbSBarry Smith 788d382aafbSBarry Smith Synopsis: 789aaa7dc30SBarry Smith #include <petscsys.h> 790dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 791d382aafbSBarry Smith 792d382aafbSBarry Smith Not Collective 793d382aafbSBarry Smith 794d382aafbSBarry Smith Input Parameter: 795d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 796d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 797d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 798dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 799d382aafbSBarry Smith 800d382aafbSBarry Smith Output Parameter: 801d382aafbSBarry Smith + r1 - memory allocated in first chunk 802d382aafbSBarry Smith . r2 - memory allocated in second chunk 803d382aafbSBarry Smith . r3 - memory allocated in third chunk 804d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 805d382aafbSBarry Smith 806d382aafbSBarry Smith Level: developer 807d382aafbSBarry Smith 8081795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 809d382aafbSBarry Smith 810d382aafbSBarry Smith Concepts: memory allocation 811d382aafbSBarry Smith 812d382aafbSBarry Smith M*/ 81320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8141d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 815d382aafbSBarry Smith #else 816dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 817ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 818278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8193589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 820d382aafbSBarry Smith #endif 821d382aafbSBarry Smith 822d382aafbSBarry Smith /*MC 8231795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 824d382aafbSBarry Smith 825eca87e8dSBarry Smith Synopsis: 826aaa7dc30SBarry Smith #include <petscsys.h> 8271795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 828eca87e8dSBarry Smith 829eca87e8dSBarry Smith Not Collective 830eca87e8dSBarry Smith 831d382aafbSBarry Smith Input Parameter: 832d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 833d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 834d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8351795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8361795a4d1SJed Brown 8371795a4d1SJed Brown Output Parameter: 8381795a4d1SJed Brown + r1 - memory allocated in first chunk 8391795a4d1SJed Brown . r2 - memory allocated in second chunk 8401795a4d1SJed Brown . r3 - memory allocated in third chunk 8411795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8421795a4d1SJed Brown 8431795a4d1SJed Brown Level: developer 8441795a4d1SJed Brown 8451795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8461795a4d1SJed Brown 8471795a4d1SJed Brown Concepts: memory allocation 8481795a4d1SJed Brown 8491795a4d1SJed Brown M*/ 8501795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8511795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8521795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8531795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8541795a4d1SJed Brown 8551795a4d1SJed Brown /*MC 856dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 857d382aafbSBarry Smith 858d382aafbSBarry Smith Synopsis: 859aaa7dc30SBarry Smith #include <petscsys.h> 860dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 861d382aafbSBarry Smith 862d382aafbSBarry Smith Not Collective 863d382aafbSBarry Smith 864d382aafbSBarry Smith Input Parameter: 865d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 866d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 867d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 868d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 869dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 870d382aafbSBarry Smith 871d382aafbSBarry Smith Output Parameter: 872d382aafbSBarry Smith + r1 - memory allocated in first chunk 873d382aafbSBarry Smith . r2 - memory allocated in second chunk 874d382aafbSBarry Smith . r3 - memory allocated in third chunk 875d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 876d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 877d382aafbSBarry Smith 878d382aafbSBarry Smith Level: developer 879d382aafbSBarry Smith 8801795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 881d382aafbSBarry Smith 882d382aafbSBarry Smith Concepts: memory allocation 883d382aafbSBarry Smith 884d382aafbSBarry Smith M*/ 88520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8861d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 887d382aafbSBarry Smith #else 888dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 889ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 890278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8913589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 892d382aafbSBarry Smith #endif 893d382aafbSBarry Smith 894d382aafbSBarry Smith /*MC 8951795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 896d382aafbSBarry Smith 897eca87e8dSBarry Smith Synopsis: 898aaa7dc30SBarry Smith #include <petscsys.h> 8991795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 900eca87e8dSBarry Smith 901eca87e8dSBarry Smith Not Collective 902eca87e8dSBarry Smith 903d382aafbSBarry Smith Input Parameter: 904d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 905d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 906d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 907d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9081795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9091795a4d1SJed Brown 9101795a4d1SJed Brown Output Parameter: 9111795a4d1SJed Brown + r1 - memory allocated in first chunk 9121795a4d1SJed Brown . r2 - memory allocated in second chunk 9131795a4d1SJed Brown . r3 - memory allocated in third chunk 9141795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9151795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9161795a4d1SJed Brown 9171795a4d1SJed Brown Level: developer 9181795a4d1SJed Brown 9191795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9201795a4d1SJed Brown 9211795a4d1SJed Brown Concepts: memory allocation 9221795a4d1SJed Brown 9231795a4d1SJed Brown M*/ 9241795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9251795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9261795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9271795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 928d382aafbSBarry Smith 929d382aafbSBarry Smith /*MC 930dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 931d382aafbSBarry Smith 932d382aafbSBarry Smith Synopsis: 933aaa7dc30SBarry Smith #include <petscsys.h> 934dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 935d382aafbSBarry Smith 936d382aafbSBarry Smith Not Collective 937d382aafbSBarry Smith 938d382aafbSBarry Smith Input Parameter: 939d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 940d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 941d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 942d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 943d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 944dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 945d382aafbSBarry Smith 946d382aafbSBarry Smith Output Parameter: 947d382aafbSBarry Smith + r1 - memory allocated in first chunk 948d382aafbSBarry Smith . r2 - memory allocated in second chunk 949d382aafbSBarry Smith . r3 - memory allocated in third chunk 950d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 951d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 952d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 953d382aafbSBarry Smith 954d382aafbSBarry Smith Level: developer 955d382aafbSBarry Smith 9561795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 957d382aafbSBarry Smith 958d382aafbSBarry Smith Concepts: memory allocation 959d382aafbSBarry Smith 960d382aafbSBarry Smith M*/ 96120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9621d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 963d382aafbSBarry Smith #else 964dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 965ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 966278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9673589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 968d382aafbSBarry Smith #endif 969d382aafbSBarry Smith 970d382aafbSBarry Smith /*MC 9711795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 972d382aafbSBarry Smith 973eca87e8dSBarry Smith Synopsis: 974aaa7dc30SBarry Smith #include <petscsys.h> 9751795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 976eca87e8dSBarry Smith 977eca87e8dSBarry Smith Not Collective 978eca87e8dSBarry Smith 979d382aafbSBarry Smith Input Parameter: 980d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 981d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 982d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 983d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 984d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9851795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9861795a4d1SJed Brown 9871795a4d1SJed Brown Output Parameter: 9881795a4d1SJed Brown + r1 - memory allocated in first chunk 9891795a4d1SJed Brown . r2 - memory allocated in second chunk 9901795a4d1SJed Brown . r3 - memory allocated in third chunk 9911795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9921795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9931795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9941795a4d1SJed Brown 9951795a4d1SJed Brown Level: developer 9961795a4d1SJed Brown 9971795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9981795a4d1SJed Brown 9991795a4d1SJed Brown Concepts: memory allocation 10001795a4d1SJed Brown M*/ 10011795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10021795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10031795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10041795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10051795a4d1SJed Brown 10061795a4d1SJed Brown /*MC 1007dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1008d382aafbSBarry Smith 1009d382aafbSBarry Smith Synopsis: 1010aaa7dc30SBarry Smith #include <petscsys.h> 1011dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1012d382aafbSBarry Smith 1013d382aafbSBarry Smith Not Collective 1014d382aafbSBarry Smith 1015d382aafbSBarry Smith Input Parameter: 1016d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1017d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1018d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1019d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1020d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1021d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1022dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1023d382aafbSBarry Smith 1024d382aafbSBarry Smith Output Parameter: 1025d382aafbSBarry Smith + r1 - memory allocated in first chunk 1026d382aafbSBarry Smith . r2 - memory allocated in second chunk 1027d382aafbSBarry Smith . r3 - memory allocated in third chunk 1028d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1029d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1030d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1031eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1032d382aafbSBarry Smith 1033d382aafbSBarry Smith Level: developer 1034d382aafbSBarry Smith 10351795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1036d382aafbSBarry Smith 1037d382aafbSBarry Smith Concepts: memory allocation 1038d382aafbSBarry Smith 1039d382aafbSBarry Smith M*/ 104020a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10411d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1042d382aafbSBarry Smith #else 1043dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1044ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1045278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10463589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1047d382aafbSBarry Smith #endif 1048d382aafbSBarry Smith 1049d382aafbSBarry Smith /*MC 10501795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10511795a4d1SJed Brown 10521795a4d1SJed Brown Synopsis: 1053aaa7dc30SBarry Smith #include <petscsys.h> 10541795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10551795a4d1SJed Brown 10561795a4d1SJed Brown Not Collective 10571795a4d1SJed Brown 10581795a4d1SJed Brown Input Parameter: 10591795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10601795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10611795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10621795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10631795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10641795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10651795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10661795a4d1SJed Brown 10671795a4d1SJed Brown Output Parameter: 10681795a4d1SJed Brown + r1 - memory allocated in first chunk 10691795a4d1SJed Brown . r2 - memory allocated in second chunk 10701795a4d1SJed Brown . r3 - memory allocated in third chunk 10711795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10721795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10731795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10741795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10751795a4d1SJed Brown 10761795a4d1SJed Brown Level: developer 10771795a4d1SJed Brown 10781795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10791795a4d1SJed Brown 10801795a4d1SJed Brown Concepts: memory allocation 10811795a4d1SJed Brown M*/ 10821795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10837ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10841795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10851795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10867ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10871795a4d1SJed Brown 10881795a4d1SJed Brown /*MC 1089503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1090d382aafbSBarry Smith 1091eca87e8dSBarry Smith Synopsis: 1092aaa7dc30SBarry Smith #include <petscsys.h> 1093b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1094eca87e8dSBarry Smith 1095eca87e8dSBarry Smith Not Collective 1096eca87e8dSBarry Smith 1097d382aafbSBarry Smith Output Parameter: 1098b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1099d382aafbSBarry Smith 1100d382aafbSBarry Smith Level: beginner 1101d382aafbSBarry Smith 1102ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1103d382aafbSBarry Smith 1104d382aafbSBarry Smith Concepts: memory allocation 1105d382aafbSBarry Smith 1106d382aafbSBarry Smith M*/ 1107b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1108ad0619ddSBarry Smith 1109ad0619ddSBarry Smith /*MC 1110b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1111ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1112ad0619ddSBarry Smith 1113ad0619ddSBarry Smith Synopsis: 1114aaa7dc30SBarry Smith #include <petscsys.h> 1115b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1116ad0619ddSBarry Smith 1117ad0619ddSBarry Smith Not Collective 1118ad0619ddSBarry Smith 1119ad0619ddSBarry Smith Input Parameter: 1120b00a9115SJed Brown . obj - object memory is logged to 1121ad0619ddSBarry Smith 1122ad0619ddSBarry Smith Output Parameter: 1123b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1124ad0619ddSBarry Smith 1125ad0619ddSBarry Smith Level: developer 1126ad0619ddSBarry Smith 1127ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1128ad0619ddSBarry Smith 1129ad0619ddSBarry Smith Concepts: memory allocation 1130ad0619ddSBarry Smith 1131ad0619ddSBarry Smith M*/ 1132d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith /*MC 1135d382aafbSBarry Smith PetscFree - Frees memory 1136d382aafbSBarry Smith 1137eca87e8dSBarry Smith Synopsis: 1138aaa7dc30SBarry Smith #include <petscsys.h> 1139eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1140eca87e8dSBarry Smith 1141eca87e8dSBarry Smith Not Collective 1142eca87e8dSBarry Smith 1143d382aafbSBarry Smith Input Parameter: 1144d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1145d382aafbSBarry Smith 1146d382aafbSBarry Smith Level: beginner 1147d382aafbSBarry Smith 114849d7da52SJed Brown Notes: 114949d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 115049d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1151d382aafbSBarry Smith 1152d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1153d382aafbSBarry Smith 1154d382aafbSBarry Smith Concepts: memory allocation 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith M*/ 115749d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith /*MC 1160d382aafbSBarry Smith PetscFreeVoid - Frees memory 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith Synopsis: 1163aaa7dc30SBarry Smith #include <petscsys.h> 1164d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1165d382aafbSBarry Smith 1166eca87e8dSBarry Smith Not Collective 1167eca87e8dSBarry Smith 1168eca87e8dSBarry Smith Input Parameter: 1169eca87e8dSBarry Smith . memory - memory to free 1170eca87e8dSBarry Smith 1171d382aafbSBarry Smith Level: beginner 1172d382aafbSBarry Smith 1173d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1174d382aafbSBarry Smith 1175d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1176d382aafbSBarry Smith 1177d382aafbSBarry Smith Concepts: memory allocation 1178d382aafbSBarry Smith 1179d382aafbSBarry Smith M*/ 1180efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith 1183d382aafbSBarry Smith /*MC 1184d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1185d382aafbSBarry Smith 1186eca87e8dSBarry Smith Synopsis: 1187aaa7dc30SBarry Smith #include <petscsys.h> 1188eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1189eca87e8dSBarry Smith 1190eca87e8dSBarry Smith Not Collective 1191eca87e8dSBarry Smith 1192d382aafbSBarry Smith Input Parameter: 1193d382aafbSBarry Smith + memory1 - memory to free 1194d382aafbSBarry Smith - memory2 - 2nd memory to free 1195d382aafbSBarry Smith 1196d382aafbSBarry Smith Level: developer 1197d382aafbSBarry Smith 1198d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1199d382aafbSBarry Smith 1200d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith Concepts: memory allocation 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith M*/ 1205b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1206d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1207d382aafbSBarry Smith #else 1208e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1209d382aafbSBarry Smith #endif 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith /*MC 1212d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1213d382aafbSBarry Smith 1214eca87e8dSBarry Smith Synopsis: 1215aaa7dc30SBarry Smith #include <petscsys.h> 1216eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1217eca87e8dSBarry Smith 1218eca87e8dSBarry Smith Not Collective 1219eca87e8dSBarry Smith 1220d382aafbSBarry Smith Input Parameter: 1221d382aafbSBarry Smith + memory1 - memory to free 1222d382aafbSBarry Smith . memory2 - 2nd memory to free 1223d382aafbSBarry Smith - memory3 - 3rd memory to free 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith Level: developer 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1230d382aafbSBarry Smith 1231d382aafbSBarry Smith Concepts: memory allocation 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith M*/ 1234b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1235d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1236d382aafbSBarry Smith #else 1237e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1238d382aafbSBarry Smith #endif 1239d382aafbSBarry Smith 1240d382aafbSBarry Smith /*MC 1241d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1242d382aafbSBarry Smith 1243eca87e8dSBarry Smith Synopsis: 1244aaa7dc30SBarry Smith #include <petscsys.h> 1245eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1246eca87e8dSBarry Smith 1247eca87e8dSBarry Smith Not Collective 1248eca87e8dSBarry Smith 1249d382aafbSBarry Smith Input Parameter: 1250d382aafbSBarry Smith + m1 - memory to free 1251d382aafbSBarry Smith . m2 - 2nd memory to free 1252d382aafbSBarry Smith . m3 - 3rd memory to free 1253d382aafbSBarry Smith - m4 - 4th memory to free 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith Level: developer 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1258d382aafbSBarry Smith 1259d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1260d382aafbSBarry Smith 1261d382aafbSBarry Smith Concepts: memory allocation 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith M*/ 1264b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1265d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1266d382aafbSBarry Smith #else 1267e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1268d382aafbSBarry Smith #endif 1269d382aafbSBarry Smith 1270d382aafbSBarry Smith /*MC 1271d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1272d382aafbSBarry Smith 1273eca87e8dSBarry Smith Synopsis: 1274aaa7dc30SBarry Smith #include <petscsys.h> 1275eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1276eca87e8dSBarry Smith 1277eca87e8dSBarry Smith Not Collective 1278eca87e8dSBarry Smith 1279d382aafbSBarry Smith Input Parameter: 1280d382aafbSBarry Smith + m1 - memory to free 1281d382aafbSBarry Smith . m2 - 2nd memory to free 1282d382aafbSBarry Smith . m3 - 3rd memory to free 1283d382aafbSBarry Smith . m4 - 4th memory to free 1284d382aafbSBarry Smith - m5 - 5th memory to free 1285d382aafbSBarry Smith 1286d382aafbSBarry Smith Level: developer 1287d382aafbSBarry Smith 1288d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1291d382aafbSBarry Smith 1292d382aafbSBarry Smith Concepts: memory allocation 1293d382aafbSBarry Smith 1294d382aafbSBarry Smith M*/ 1295b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1296d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1297d382aafbSBarry Smith #else 1298e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1299e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1300d382aafbSBarry Smith #endif 1301d382aafbSBarry Smith 1302d382aafbSBarry Smith 1303d382aafbSBarry Smith /*MC 1304d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1305d382aafbSBarry Smith 1306eca87e8dSBarry Smith Synopsis: 1307aaa7dc30SBarry Smith #include <petscsys.h> 1308eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1309eca87e8dSBarry Smith 1310eca87e8dSBarry Smith Not Collective 1311eca87e8dSBarry Smith 1312d382aafbSBarry Smith Input Parameter: 1313d382aafbSBarry Smith + m1 - memory to free 1314d382aafbSBarry Smith . m2 - 2nd memory to free 1315d382aafbSBarry Smith . m3 - 3rd memory to free 1316d382aafbSBarry Smith . m4 - 4th memory to free 1317d382aafbSBarry Smith . m5 - 5th memory to free 1318d382aafbSBarry Smith - m6 - 6th memory to free 1319d382aafbSBarry Smith 1320d382aafbSBarry Smith 1321d382aafbSBarry Smith Level: developer 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1326d382aafbSBarry Smith 1327d382aafbSBarry Smith Concepts: memory allocation 1328d382aafbSBarry Smith 1329d382aafbSBarry Smith M*/ 1330b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1331d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1332d382aafbSBarry Smith #else 1333e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1334e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1335e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1336d382aafbSBarry Smith #endif 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith /*MC 1339d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1340d382aafbSBarry Smith 1341eca87e8dSBarry Smith Synopsis: 1342aaa7dc30SBarry Smith #include <petscsys.h> 1343eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1344eca87e8dSBarry Smith 1345eca87e8dSBarry Smith Not Collective 1346eca87e8dSBarry Smith 1347d382aafbSBarry Smith Input Parameter: 1348d382aafbSBarry Smith + m1 - memory to free 1349d382aafbSBarry Smith . m2 - 2nd memory to free 1350d382aafbSBarry Smith . m3 - 3rd memory to free 1351d382aafbSBarry Smith . m4 - 4th memory to free 1352d382aafbSBarry Smith . m5 - 5th memory to free 1353d382aafbSBarry Smith . m6 - 6th memory to free 1354d382aafbSBarry Smith - m7 - 7th memory to free 1355d382aafbSBarry Smith 1356d382aafbSBarry Smith 1357d382aafbSBarry Smith Level: developer 1358d382aafbSBarry Smith 1359d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1360d382aafbSBarry Smith 1361d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1362d382aafbSBarry Smith PetscMalloc7() 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith Concepts: memory allocation 1365d382aafbSBarry Smith 1366d382aafbSBarry Smith M*/ 1367b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1368d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1369d382aafbSBarry Smith #else 1370e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1371e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 137206c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1373e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1374d382aafbSBarry Smith #endif 1375d382aafbSBarry Smith 1376efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1377efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1378efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1380d382aafbSBarry Smith 1381d382aafbSBarry Smith /* 1382a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1383a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1384a5057860SBarry Smith timing etc. 1385a5057860SBarry Smith */ 1386a5057860SBarry Smith typedef double PetscLogDouble; 1387a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1388a5057860SBarry Smith 1389a5057860SBarry Smith /* 139066d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1391d382aafbSBarry Smith */ 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13970acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1398efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1400574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1402d382aafbSBarry Smith 1403d382aafbSBarry Smith /*E 1404d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1405d382aafbSBarry Smith 1406d382aafbSBarry Smith Level: beginner 1407d382aafbSBarry Smith 1408d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1409d382aafbSBarry Smith 1410d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1411d382aafbSBarry Smith PetscDataTypeGetSize() 1412d382aafbSBarry Smith 1413d382aafbSBarry Smith E*/ 1414d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 14157e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 14166a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1417d382aafbSBarry Smith 1418d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1419d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1420d382aafbSBarry Smith #else 1421ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1422d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 142359a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142459a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1425d382aafbSBarry Smith #else 1426d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1427d382aafbSBarry Smith #endif 1428d382aafbSBarry Smith #endif 1429ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1430d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 143159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 143259a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1433d382aafbSBarry Smith #else 1434d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1435d382aafbSBarry Smith #endif 1436d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1437d382aafbSBarry Smith 1438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14418e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1442d382aafbSBarry Smith 1443d382aafbSBarry Smith /* 1444d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1445d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1446d382aafbSBarry Smith functionality and/or error checking. 1447d382aafbSBarry Smith */ 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1452d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14642f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14692c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 147247340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14736fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14746991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14756991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1477d382aafbSBarry Smith 1478573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1479573b0fb4SBarry Smith 1480d382aafbSBarry Smith /*S 1481d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1482d382aafbSBarry Smith 1483d382aafbSBarry Smith Level: intermediate 1484d382aafbSBarry Smith 1485d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1486d382aafbSBarry Smith S*/ 1487d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1488d382aafbSBarry Smith 1489014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1492d382aafbSBarry Smith 1493a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1494a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1495a53986e1SJed Brown 1496d382aafbSBarry Smith /* 1497d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1498d382aafbSBarry Smith */ 1499014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 15007c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1501014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15022414b3c7SJed Brown #else 15032414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15042414b3c7SJed Brown #endif 15052414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1506014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1507014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1508d9822059SBarry Smith #else 1509d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1510d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1511d9822059SBarry Smith #endif 1512014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1513d382aafbSBarry Smith 1514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1516eb3f98d2SBarry Smith 1517d382aafbSBarry Smith /*S 1518d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1519d382aafbSBarry Smith 1520d382aafbSBarry Smith Level: beginner 1521d382aafbSBarry Smith 15222981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1523d382aafbSBarry Smith 15242b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1525d382aafbSBarry Smith S*/ 1526d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1527d382aafbSBarry Smith 1528270bf2e7SJed Brown /*MC 1529127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1530127c8a3bSJed Brown 1531127c8a3bSJed Brown Level: developer 1532127c8a3bSJed Brown 1533127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1534127c8a3bSJed Brown 1535127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1536127c8a3bSJed Brown M*/ 1537127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1538127c8a3bSJed Brown 1539127c8a3bSJed Brown /*MC 1540270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1541270bf2e7SJed Brown 1542270bf2e7SJed Brown Level: developer 1543270bf2e7SJed Brown 1544270bf2e7SJed Brown Notes: 1545270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1546270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1547270bf2e7SJed Brown 15488dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1549270bf2e7SJed Brown M*/ 1550270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1551270bf2e7SJed Brown 1552d382aafbSBarry Smith /*S 1553140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1554d382aafbSBarry Smith by string name 1555d382aafbSBarry Smith 1556d382aafbSBarry Smith Level: advanced 1557d382aafbSBarry Smith 1558140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1559d382aafbSBarry Smith S*/ 1560140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1561d382aafbSBarry Smith 1562d382aafbSBarry Smith /*E 1563d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1564d382aafbSBarry Smith 1565d382aafbSBarry Smith Level: beginner 1566d382aafbSBarry Smith 15671cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15681cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15691cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15701cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15711cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1572d382aafbSBarry Smith 1573d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1574d382aafbSBarry Smith E*/ 1575d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1576d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1577d6a4318aSJed Brown 1578639ff905SBarry Smith /* 1579639ff905SBarry Smith Defines PETSc error handling. 1580639ff905SBarry Smith */ 1581639ff905SBarry Smith #include <petscerror.h> 1582d382aafbSBarry Smith 15830700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1584014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1585014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1587d382aafbSBarry Smith 1588d382aafbSBarry Smith /* 1589d382aafbSBarry Smith Routines that get memory usage information from the OS 1590d382aafbSBarry Smith */ 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1594b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1595d382aafbSBarry Smith 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1598d382aafbSBarry Smith 1599d382aafbSBarry Smith /* 1600d382aafbSBarry Smith Initialization of PETSc 1601d382aafbSBarry Smith */ 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1612d382aafbSBarry Smith 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1614607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1615d382aafbSBarry Smith 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1620d382aafbSBarry Smith 1621d382aafbSBarry Smith /* 1622d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16232981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1624d382aafbSBarry Smith */ 1625638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1626638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1627638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1628d382aafbSBarry Smith 1629d382aafbSBarry Smith /* 1630d382aafbSBarry Smith Functions that can act on any PETSc object. 1631d382aafbSBarry Smith */ 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1651bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1652bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1656d382aafbSBarry Smith 1657665c2dedSJed Brown #include <petscviewertypes.h> 1658639ff905SBarry Smith #include <petscoptions.h> 1659639ff905SBarry Smith 16600633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16610633abcbSJed Brown 1662639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1663c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1664dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1665639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16660005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16670005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1675685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1681d382aafbSBarry Smith 1682e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16837aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1684e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1685e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1686e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1687e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1688e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1689e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1690e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1691e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1692e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 169315681b3cSBarry Smith 1694ec7429eaSBarry Smith #else 16957aab2a10SBarry Smith #define PetscSAWsBlock() 0 1696e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1697e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1698e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1699e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1700e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1701e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1702e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1703e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1704e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 170515681b3cSBarry Smith 1706ec7429eaSBarry Smith #endif 1707b90c6cbeSBarry Smith 17087d5d4d99SBarry Smith typedef void* PetscDLHandle; 1709e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 171082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17137d5d4d99SBarry Smith 17145fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1715a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17165fe58b6fSBarry Smith #endif 17177eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1718a64a8e02SBarry Smith 1719d382aafbSBarry Smith /*S 1720140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1721d382aafbSBarry Smith 17221d0fab5eSBarry Smith Level: developer 1723d382aafbSBarry Smith 17241d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17251d0fab5eSBarry Smith 1726140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1727d382aafbSBarry Smith S*/ 1728140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1729d382aafbSBarry Smith 1730140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1731140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1732140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1733140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1734140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1735140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1736d382aafbSBarry Smith 1737d382aafbSBarry Smith /* 1738503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1739d382aafbSBarry Smith link libraries that will be loaded as needed. 1740d382aafbSBarry Smith */ 1741a240a19fSJed Brown 1742a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1743a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1744140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17451c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17461c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1747140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1748140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1749140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1750140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1751d382aafbSBarry Smith 1752d382aafbSBarry Smith /*S 1753d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1754d382aafbSBarry Smith 1755d382aafbSBarry Smith Level: advanced 1756d382aafbSBarry Smith 1757d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1758d382aafbSBarry Smith S*/ 1759d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1760014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1768d382aafbSBarry Smith 1769d382aafbSBarry Smith /* 1770d382aafbSBarry Smith Useful utility routines 1771d382aafbSBarry Smith */ 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1778d382aafbSBarry Smith 1779503cfb0cSBarry Smith /* 1780ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1781503cfb0cSBarry Smith 1782503cfb0cSBarry Smith Notes: This is useful in cases like 1783503cfb0cSBarry Smith $ int *a; 1784ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17851cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1786503cfb0cSBarry Smith */ 1787d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1788503cfb0cSBarry Smith 1789d382aafbSBarry Smith /*MC 1790d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1791d382aafbSBarry Smith 1792d382aafbSBarry Smith Synopsis: 1793aaa7dc30SBarry Smith #include <petscsys.h> 1794d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1795d382aafbSBarry Smith 1796eca87e8dSBarry Smith Not Collective 1797eca87e8dSBarry Smith 1798d382aafbSBarry Smith Input Parameters: 1799d382aafbSBarry Smith . format - the usual printf() format string 1800d382aafbSBarry Smith 1801d382aafbSBarry Smith Level: developer 1802d382aafbSBarry Smith 1803d382aafbSBarry Smith Fortran Note: 1804d382aafbSBarry Smith This routine is not supported in Fortran. 1805d382aafbSBarry Smith 1806d382aafbSBarry Smith Concepts: help messages^printing 1807d382aafbSBarry Smith Concepts: printing^help messages 1808d382aafbSBarry Smith 1809d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1810d382aafbSBarry Smith M*/ 1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1812d382aafbSBarry Smith 1813fcfd50ebSBarry Smith /* 1814fcfd50ebSBarry Smith Defines PETSc profiling. 1815fcfd50ebSBarry Smith */ 18162c8e378dSBarry Smith #include <petsclog.h> 1817fcfd50ebSBarry Smith 1818fcfd50ebSBarry Smith /* 1819fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1820fcfd50ebSBarry Smith */ 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1828fcfd50ebSBarry Smith 1829fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1830fcfd50ebSBarry Smith #include <stdarg.h> 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1834fcfd50ebSBarry Smith 1835fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1837fcfd50ebSBarry Smith #endif 1838fcfd50ebSBarry Smith 1839f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1840f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1841f1d7fe2eSBarry Smith #endif 1842f1d7fe2eSBarry Smith 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1846d382aafbSBarry Smith 1847d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 184996a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 185074ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1851d382aafbSBarry Smith #endif 1852d382aafbSBarry Smith 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18550ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1857014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1860d382aafbSBarry Smith 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith /*S 1864d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1865d382aafbSBarry Smith 1866d382aafbSBarry Smith Level: advanced 1867d382aafbSBarry Smith 1868d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1869d382aafbSBarry Smith S*/ 1870014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1871d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1872014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1873014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1874014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1875014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1876014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1877d382aafbSBarry Smith 1878d382aafbSBarry Smith /* 1879d382aafbSBarry Smith For use in debuggers 1880d382aafbSBarry Smith */ 1881014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1882014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1883014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1884014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1885014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1886d382aafbSBarry Smith 1887a663daf8SBarry Smith #include <stddef.h> 1888a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1889d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1890d382aafbSBarry Smith #include <stdlib.h> 1891d382aafbSBarry Smith #endif 18926c7e564aSBarry Smith 18934a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1894d382aafbSBarry Smith #include <xmmintrin.h> 1895d382aafbSBarry Smith #endif 1896d382aafbSBarry Smith 1897fcfd50ebSBarry Smith #undef __FUNCT__ 1898fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1899d382aafbSBarry Smith /*@C 1900d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1901d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1902d382aafbSBarry Smith PetscMemmove() in that case. 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith Not Collective 1905d382aafbSBarry Smith 1906d382aafbSBarry Smith Input Parameters: 1907d382aafbSBarry Smith + b - pointer to initial memory space 1908d382aafbSBarry Smith - n - length (in bytes) of space to copy 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith Output Parameter: 1911d382aafbSBarry Smith . a - pointer to copy space 1912d382aafbSBarry Smith 1913d382aafbSBarry Smith Level: intermediate 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith Compile Option: 1916d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1917d382aafbSBarry Smith for memory copies on double precision values. 1918d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1919d382aafbSBarry Smith for memory copies on double precision values. 1920d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1921d382aafbSBarry Smith for memory copies on double precision values. 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith Note: 1924d382aafbSBarry Smith This routine is analogous to memcpy(). 1925d382aafbSBarry Smith 1926503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1927503cfb0cSBarry Smith 1928d382aafbSBarry Smith Concepts: memory^copying 1929d382aafbSBarry Smith Concepts: copying^memory 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith .seealso: PetscMemmove() 1932d382aafbSBarry Smith 1933d382aafbSBarry Smith @*/ 19347087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1935d382aafbSBarry Smith { 1936d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1937c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1938c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1939a7e36092SMatthew G Knepley PetscFunctionBegin; 1940e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1941e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1942a7e36092SMatthew G Knepley #else 1943d382aafbSBarry Smith PetscFunctionBegin; 1944a7e36092SMatthew G Knepley #endif 1945a47a537aSLisandro Dalcin if (a != b && n > 0) { 1946d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1947e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1948d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1949d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1950d382aafbSBarry Smith #endif 1951d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1952c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1953d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1954d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1955c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1956c5df96a5SBarry Smith PetscErrorCode ierr; 1957c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19588b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1959d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1960d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1961d382aafbSBarry Smith #else 1962d382aafbSBarry Smith size_t i; 1963d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1964d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1965d382aafbSBarry Smith #endif 1966d382aafbSBarry Smith } else { 1967d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1968d382aafbSBarry Smith } 1969d382aafbSBarry Smith #else 1970d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1971d382aafbSBarry Smith #endif 1972d382aafbSBarry Smith } 1973d382aafbSBarry Smith PetscFunctionReturn(0); 1974d382aafbSBarry Smith } 1975d382aafbSBarry Smith 1976d382aafbSBarry Smith /*@C 1977d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith Not Collective 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith Input Parameters: 1982d382aafbSBarry Smith + a - pointer to beginning memory location 1983d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1984d382aafbSBarry Smith 1985d382aafbSBarry Smith Level: intermediate 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith Compile Option: 1988d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1989d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1990d382aafbSBarry Smith 1991503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1992503cfb0cSBarry Smith 1993d382aafbSBarry Smith Concepts: memory^zeroing 1994d382aafbSBarry Smith Concepts: zeroing^memory 1995d382aafbSBarry Smith 1996d382aafbSBarry Smith .seealso: PetscMemcpy() 1997d382aafbSBarry Smith @*/ 19987087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1999d382aafbSBarry Smith { 2000d382aafbSBarry Smith if (n > 0) { 2001d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2002e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2003d382aafbSBarry Smith #endif 2004d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2005d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2006d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2007d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2008d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2009d382aafbSBarry Smith } else { 2010d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2011d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2012d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2013d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2014d382aafbSBarry Smith } else { 2015d382aafbSBarry Smith #endif 2016d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2017d382aafbSBarry Smith bzero((char *)a,n); 2018d382aafbSBarry Smith #else 2019d382aafbSBarry Smith memset((char*)a,0,n); 2020d382aafbSBarry Smith #endif 2021d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2022d382aafbSBarry Smith } 2023d382aafbSBarry Smith #endif 2024d382aafbSBarry Smith } 2025d382aafbSBarry Smith return 0; 2026d382aafbSBarry Smith } 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith /*MC 2029d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2030d382aafbSBarry Smith 2031eca87e8dSBarry Smith Synopsis: 2032aaa7dc30SBarry Smith #include <petscsys.h> 2033eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2034eca87e8dSBarry Smith 2035d382aafbSBarry Smith Not Collective 2036d382aafbSBarry Smith 2037d382aafbSBarry Smith Input Parameters: 2038d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2039d382aafbSBarry Smith . n - number of elements to fetch 2040d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 204150d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith Level: developer 2044d382aafbSBarry Smith 2045d382aafbSBarry Smith Notes: 2046d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2047d382aafbSBarry Smith 204850d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204950d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 205050d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 205163cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 205263cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 205363cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2054d382aafbSBarry Smith 2055d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2056d382aafbSBarry Smith address). 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith Concepts: memory 2059d382aafbSBarry Smith M*/ 2060d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2061d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2062d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2063d382aafbSBarry Smith } while (0) 2064d382aafbSBarry Smith 2065d382aafbSBarry Smith /* 2066d382aafbSBarry Smith Determine if some of the kernel computation routines use 2067d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2068d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2069d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2070e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2071d382aafbSBarry Smith */ 2072d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2075d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2076d382aafbSBarry Smith #endif 2077d382aafbSBarry Smith 20785a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20795a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2080d382aafbSBarry Smith #endif 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2083d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2084d382aafbSBarry Smith #endif 2085d382aafbSBarry Smith 2086d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2087d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2088d382aafbSBarry Smith #endif 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2091d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2092d382aafbSBarry Smith #endif 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2095d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2096d382aafbSBarry Smith #endif 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2099d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2100d382aafbSBarry Smith #endif 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2103d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2104d382aafbSBarry Smith #endif 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2107d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2108d382aafbSBarry Smith #endif 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2111d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2115d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2116d382aafbSBarry Smith #endif 2117d382aafbSBarry Smith 2118d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2119d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2120d382aafbSBarry Smith #endif 2121d382aafbSBarry Smith 2122d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2123d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2124d382aafbSBarry Smith #endif 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2127d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2128d382aafbSBarry Smith #endif 2129d382aafbSBarry Smith 2130d382aafbSBarry Smith #endif 2131d382aafbSBarry Smith 2132d382aafbSBarry Smith /* 2133d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2134d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2135d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2136d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2137d382aafbSBarry Smith ugly extern "C" {} wrappers. 2138d382aafbSBarry Smith */ 2139d382aafbSBarry Smith #if defined(__cplusplus) 2140d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2141d382aafbSBarry Smith #define EXTERN_C_END } 2142d382aafbSBarry Smith #else 2143d382aafbSBarry Smith #define EXTERN_C_BEGIN 2144d382aafbSBarry Smith #define EXTERN_C_END 2145d382aafbSBarry Smith #endif 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith /*MC 2150d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2151d382aafbSBarry Smith communication 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith Level: beginner 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2158d382aafbSBarry Smith M*/ 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith /*MC 2161d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2162d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 21631cc8b206SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith Level: beginner 2166d382aafbSBarry Smith 21671cc8b206SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL 2168d382aafbSBarry Smith M*/ 2169d382aafbSBarry Smith 2170d382aafbSBarry Smith /*MC 21718619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21728619c96cSJed Brown 21738619c96cSJed Brown Synopsis: 21748619c96cSJed Brown #include <petscsys.h> 21758619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21768619c96cSJed Brown 21778619c96cSJed Brown Level: beginner 21788619c96cSJed Brown 21798619c96cSJed Brown Note: 21808cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21818619c96cSJed Brown 21828619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21838619c96cSJed Brown M*/ 21848619c96cSJed Brown 21858619c96cSJed Brown /*MC 2186d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith Level: beginner 2189d382aafbSBarry Smith 21901cc8b206SBarry Smith .seealso: PetscScalar 2191d382aafbSBarry Smith M*/ 2192d382aafbSBarry Smith 2193d382aafbSBarry Smith /*MC 2194d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2195d382aafbSBarry Smith 2196d382aafbSBarry Smith Level: beginner 2197d382aafbSBarry Smith 2198d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2199d382aafbSBarry Smith pass this value 2200d382aafbSBarry Smith 22011cc8b206SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT 2202d382aafbSBarry Smith M*/ 2203d382aafbSBarry Smith 2204d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2205d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2206014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2207014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2208d382aafbSBarry Smith #else 2209d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2210d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2211d382aafbSBarry Smith #endif 2212d382aafbSBarry Smith #endif 2213d382aafbSBarry Smith 2214d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2215d382aafbSBarry Smith 2216d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2217d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2218d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2219d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2220d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2221d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2222d382aafbSBarry Smith 2223c5df96a5SBarry Smith #undef __FUNCT__ 2224c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 222561b0d812SBarry Smith /*@C 222661b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 222761b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 222861b0d812SBarry Smith 222961b0d812SBarry Smith Not Collective 223061b0d812SBarry Smith 223161b0d812SBarry Smith Input Parameter: 223261b0d812SBarry Smith . a - the PetscInt value 223361b0d812SBarry Smith 223461b0d812SBarry Smith Output Parameter: 223561b0d812SBarry Smith . b - the resulting PetscBLASInt value 223661b0d812SBarry Smith 223761b0d812SBarry Smith Level: advanced 223861b0d812SBarry Smith 223961b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 224061b0d812SBarry Smith @*/ 2241c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2242c5df96a5SBarry Smith { 2243c5df96a5SBarry Smith PetscFunctionBegin; 2244ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2245c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2246c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2247c5df96a5SBarry Smith #endif 2248c5df96a5SBarry Smith PetscFunctionReturn(0); 2249c5df96a5SBarry Smith } 2250c5df96a5SBarry Smith 22514dc2109aSBarry Smith #undef __FUNCT__ 22524dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 225361b0d812SBarry Smith /*@C 225461b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 225561b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 225661b0d812SBarry Smith 225761b0d812SBarry Smith Not Collective 225861b0d812SBarry Smith 225961b0d812SBarry Smith Input Parameter: 226061b0d812SBarry Smith . a - the PetscInt value 226161b0d812SBarry Smith 226261b0d812SBarry Smith Output Parameter: 226361b0d812SBarry Smith . b - the resulting PetscMPIInt value 226461b0d812SBarry Smith 226561b0d812SBarry Smith Level: advanced 226661b0d812SBarry Smith 226761b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 226861b0d812SBarry Smith @*/ 22694dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22704dc2109aSBarry Smith { 22714dc2109aSBarry Smith PetscFunctionBegin; 2272ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22734dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22744dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22754dc2109aSBarry Smith #endif 22764dc2109aSBarry Smith PetscFunctionReturn(0); 22774dc2109aSBarry Smith } 22784dc2109aSBarry Smith 22792f18eb33SBarry Smith #define PetscIntMult64bit(a,b) ((Petsc64bitInt)(a))*((Petsc64bitInt)(b)) 22802f18eb33SBarry Smith 22812f18eb33SBarry Smith #undef __FUNCT__ 22822f18eb33SBarry Smith #define __FUNCT__ "PetscRealIntMultTruncate" 22832f18eb33SBarry Smith /*@C 22842f18eb33SBarry Smith 22852f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22862f18eb33SBarry Smith 22872f18eb33SBarry Smith Not Collective 22882f18eb33SBarry Smith 22892f18eb33SBarry Smith Input Parameter: 22902f18eb33SBarry Smith + a - the PetscReal value 22912f18eb33SBarry Smith - b - the second value 22922f18eb33SBarry Smith 22932f18eb33SBarry Smith Output Parameter: 22942f18eb33SBarry Smith . c - the result as a PetscInt value 22952f18eb33SBarry Smith 22962f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 22972f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 22982f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22992f18eb33SBarry Smith 23002f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23012f18eb33SBarry Smith 23022f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23032f18eb33SBarry Smith 23042f18eb33SBarry Smith Level: advanced 23052f18eb33SBarry Smith 23062f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23072f18eb33SBarry Smith @*/ 23082f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23092f18eb33SBarry Smith { 23102f18eb33SBarry Smith Petsc64bitInt r; 23112f18eb33SBarry Smith 23122d4442ebSLisandro Dalcin r = (Petsc64bitInt) (a*(PetscReal)b); 23132f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23142f18eb33SBarry Smith return (PetscInt) r; 23152f18eb33SBarry Smith } 23162f18eb33SBarry Smith 23172f18eb33SBarry Smith #undef __FUNCT__ 23182f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultTruncate" 23192f18eb33SBarry Smith /*@C 23202f18eb33SBarry Smith 23212f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23222f18eb33SBarry Smith 23232f18eb33SBarry Smith Not Collective 23242f18eb33SBarry Smith 23252f18eb33SBarry Smith Input Parameter: 23262f18eb33SBarry Smith + a - the PetscInt value 23272f18eb33SBarry Smith - b - the second value 23282f18eb33SBarry Smith 23292f18eb33SBarry Smith Output Parameter: 23302f18eb33SBarry Smith . c - the result as a PetscInt value 23312f18eb33SBarry Smith 23322f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 23332f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23342f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23352f18eb33SBarry Smith 23362f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23372f18eb33SBarry Smith 23382f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23392f18eb33SBarry Smith 23402f18eb33SBarry Smith Level: advanced 23412f18eb33SBarry Smith 23422f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23432f18eb33SBarry Smith @*/ 23442f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23452f18eb33SBarry Smith { 23462f18eb33SBarry Smith Petsc64bitInt r; 23472f18eb33SBarry Smith 23482f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 23492f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23502f18eb33SBarry Smith return (PetscInt) r; 23512f18eb33SBarry Smith } 23522f18eb33SBarry Smith 23532f18eb33SBarry Smith #undef __FUNCT__ 2354f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumTruncate" 2355f91af8c7SBarry Smith /*@C 2356f91af8c7SBarry Smith 2357f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2358f91af8c7SBarry Smith 2359f91af8c7SBarry Smith Not Collective 2360f91af8c7SBarry Smith 2361f91af8c7SBarry Smith Input Parameter: 2362f91af8c7SBarry Smith + a - the PetscInt value 2363f91af8c7SBarry Smith - b - the second value 2364f91af8c7SBarry Smith 2365f91af8c7SBarry Smith Output Parameter: 2366f91af8c7SBarry Smith . c - the result as a PetscInt value 2367f91af8c7SBarry Smith 2368f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 2369f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2370f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2371f91af8c7SBarry Smith 2372f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2373f91af8c7SBarry Smith 2374f91af8c7SBarry Smith Level: advanced 2375f91af8c7SBarry Smith 2376f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2377f91af8c7SBarry Smith @*/ 2378f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2379f91af8c7SBarry Smith { 2380f91af8c7SBarry Smith Petsc64bitInt r; 2381f91af8c7SBarry Smith 2382f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2383f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2384f91af8c7SBarry Smith return (PetscInt) r; 2385f91af8c7SBarry Smith } 2386f91af8c7SBarry Smith 2387f91af8c7SBarry Smith #undef __FUNCT__ 23882f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultError" 23892f18eb33SBarry Smith /*@C 23902f18eb33SBarry Smith 23912f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23922f18eb33SBarry Smith 23932f18eb33SBarry Smith Not Collective 23942f18eb33SBarry Smith 23952f18eb33SBarry Smith Input Parameter: 23962f18eb33SBarry Smith + a - the PetscInt value 23972f18eb33SBarry Smith - b - the second value 23982f18eb33SBarry Smith 23992f18eb33SBarry Smith Output Parameter:ma 24002f18eb33SBarry Smith . c - the result as a PetscInt value 24012f18eb33SBarry Smith 24022f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 24032f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24042f18eb33SBarry Smith 24052f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 24062f18eb33SBarry Smith 24072f18eb33SBarry Smith Level: advanced 24082f18eb33SBarry Smith 24092f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 24102f18eb33SBarry Smith @*/ 24112f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24122f18eb33SBarry Smith { 24132f18eb33SBarry Smith Petsc64bitInt r; 24142f18eb33SBarry Smith 24152f18eb33SBarry Smith PetscFunctionBegin; 24162f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 24172f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24182f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24192f18eb33SBarry Smith #endif 2420f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2421f91af8c7SBarry Smith PetscFunctionReturn(0); 2422f91af8c7SBarry Smith } 2423f91af8c7SBarry Smith 2424f91af8c7SBarry Smith #undef __FUNCT__ 2425f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumError" 2426f91af8c7SBarry Smith /*@C 2427f91af8c7SBarry Smith 2428f91af8c7SBarry Smith PetscIntSumError - Computes the product of two positive PetscInt and generates an error with overflow. 2429f91af8c7SBarry Smith 2430f91af8c7SBarry Smith Not Collective 2431f91af8c7SBarry Smith 2432f91af8c7SBarry Smith Input Parameter: 2433f91af8c7SBarry Smith + a - the PetscInt value 2434f91af8c7SBarry Smith - b - the second value 2435f91af8c7SBarry Smith 2436f91af8c7SBarry Smith Output Parameter:ma 2437f91af8c7SBarry Smith . c - the result as a PetscInt value 2438f91af8c7SBarry Smith 2439f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 2440f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2441f91af8c7SBarry Smith 2442f91af8c7SBarry Smith Level: advanced 2443f91af8c7SBarry Smith 2444f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2445f91af8c7SBarry Smith @*/ 2446f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2447f91af8c7SBarry Smith { 2448f91af8c7SBarry Smith Petsc64bitInt r; 2449f91af8c7SBarry Smith 2450f91af8c7SBarry Smith PetscFunctionBegin; 2451f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2452f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2453f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2454f91af8c7SBarry Smith #endif 2455f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24562f18eb33SBarry Smith PetscFunctionReturn(0); 24572f18eb33SBarry Smith } 2458c5df96a5SBarry Smith 2459d382aafbSBarry Smith /* 24602981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2461d382aafbSBarry Smith */ 2462d382aafbSBarry Smith #if defined(hz) 2463d382aafbSBarry Smith #undef hz 2464d382aafbSBarry Smith #endif 2465d382aafbSBarry Smith 2466d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2467d382aafbSBarry Smith 2468d382aafbSBarry Smith 2469d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2470d382aafbSBarry Smith #include <limits.h> 2471d382aafbSBarry Smith #endif 2472d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2473d382aafbSBarry Smith #include <sys/param.h> 2474d382aafbSBarry Smith #endif 2475d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2476d382aafbSBarry Smith #include <sys/types.h> 2477d382aafbSBarry Smith #endif 2478d382aafbSBarry Smith #if defined(MAXPATHLEN) 2479d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2480d382aafbSBarry Smith #elif defined(MAX_PATH) 2481d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2482d382aafbSBarry Smith #elif defined(_MAX_PATH) 2483d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2484d382aafbSBarry Smith #else 2485d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2486d382aafbSBarry Smith #endif 2487d382aafbSBarry Smith 2488d382aafbSBarry Smith /*MC 2489d382aafbSBarry Smith 2490d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2491d382aafbSBarry Smith 2492d382aafbSBarry Smith $ 1) classic Fortran 77 style 2493af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2494d382aafbSBarry Smith $ XXX variablename 2495d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2496d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2497d382aafbSBarry Smith $ 2498d382aafbSBarry Smith $ 2) classic Fortran 90 style 2499af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2500af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2501d382aafbSBarry Smith $ XXX variablename 2502d382aafbSBarry Smith $ 2503d382aafbSBarry Smith $ 3) Using Fortran modules 2504af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2505d382aafbSBarry Smith $ use petscXXXX 2506d382aafbSBarry Smith $ XXX variablename 2507d382aafbSBarry Smith $ 2508d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2509af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2510d382aafbSBarry Smith $ use petscXXXX 2511d382aafbSBarry Smith $ type(XXX) variablename 2512e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2513d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2514d382aafbSBarry Smith 2515d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2516d382aafbSBarry Smith 2517d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2518d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2519d382aafbSBarry Smith $ integer variablename 2520d382aafbSBarry Smith $ 2521d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2522d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2523d382aafbSBarry Smith 2524d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2525d382aafbSBarry Smith for only a few PETSc functions. 2526d382aafbSBarry Smith 2527d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2528d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2529d382aafbSBarry Smith you cannot have something like 2530d382aafbSBarry Smith $ PetscInt row,col 2531d382aafbSBarry Smith $ PetscScalar val 2532d382aafbSBarry Smith $ ... 2533d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2534d382aafbSBarry Smith You must instead have 2535d382aafbSBarry Smith $ PetscInt row(1),col(1) 2536d382aafbSBarry Smith $ PetscScalar val(1) 2537d382aafbSBarry Smith $ ... 2538d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2539d382aafbSBarry Smith 2540d382aafbSBarry Smith 2541d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2542d382aafbSBarry Smith 2543af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2544af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2545d382aafbSBarry Smith 2546af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2547af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2548af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2549d382aafbSBarry Smith 2550af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2551e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2552d382aafbSBarry Smith 2553af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2554d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2555d382aafbSBarry Smith 2556af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2557d382aafbSBarry Smith automatically by "make allfortranstubs". 2558d382aafbSBarry Smith 2559af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2560af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2561d382aafbSBarry Smith include their predecessors 2562d382aafbSBarry Smith 2563d382aafbSBarry Smith Level: beginner 2564d382aafbSBarry Smith 2565d382aafbSBarry Smith M*/ 2566d382aafbSBarry Smith 2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 257327710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2574d382aafbSBarry Smith 2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 257760e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 258217d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 258317d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 258617df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2589745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 259421e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2595e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2596d382aafbSBarry Smith 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2599d382aafbSBarry Smith 260076bdecfbSBarry Smith /*J 2601d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2602d382aafbSBarry Smith 2603d382aafbSBarry Smith Level: beginner 2604d382aafbSBarry Smith 2605e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2606d382aafbSBarry Smith with the option --download-sprng 2607d382aafbSBarry Smith 26088f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 260976bdecfbSBarry Smith J*/ 261019fd82e9SBarry Smith typedef const char* PetscRandomType; 2611d382aafbSBarry Smith #define PETSCRAND "rand" 2612d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2613d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2614c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2615d382aafbSBarry Smith 2616d382aafbSBarry Smith /* Logging support */ 2617014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2618d382aafbSBarry Smith 2619607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2620d382aafbSBarry Smith 2621d382aafbSBarry Smith /*S 2622d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2623d382aafbSBarry Smith 2624d382aafbSBarry Smith Level: intermediate 2625d382aafbSBarry Smith 2626d382aafbSBarry Smith Concepts: random numbers 2627d382aafbSBarry Smith 2628d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2629d382aafbSBarry Smith S*/ 2630d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2631d382aafbSBarry Smith 2632d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2633140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2634d382aafbSBarry Smith 2635bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 263619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 263819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2639685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2641d382aafbSBarry Smith 2642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2651d382aafbSBarry Smith 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 265997540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 266097540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2661d382aafbSBarry Smith 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2673e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2674d382aafbSBarry Smith 2675d382aafbSBarry Smith /* 2676d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2677d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2678d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2679d382aafbSBarry Smith PetscBinarySeek(). 2680d382aafbSBarry Smith */ 2681d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2682d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2683d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2684d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2685d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2686d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2687d382aafbSBarry Smith 2688d382aafbSBarry Smith /*E 2689d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2690d382aafbSBarry Smith 2691d382aafbSBarry Smith Level: advanced 2692d382aafbSBarry Smith 2693d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2694d382aafbSBarry Smith E*/ 2695d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2698014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2699d382aafbSBarry Smith 2700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2706d382aafbSBarry Smith 2707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2708014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2709014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2710014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2711014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2712cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2713cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2714d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2715d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2716d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2717d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27186afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27196afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27206afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27216afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27226afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2723d382aafbSBarry Smith 27246145cd65SJed Brown /*E 27256145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27266145cd65SJed Brown 27276145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27286145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27296145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27306145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27316145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27321654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27331654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27346145cd65SJed Brown 27356145cd65SJed Brown Level: developer 27366145cd65SJed Brown 27376145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27386145cd65SJed Brown E*/ 27396145cd65SJed Brown typedef enum { 27406145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27416145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27421654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 274312af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27446145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27456145cd65SJed Brown } PetscBuildTwoSidedType; 27466145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27476145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27486145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27496145cd65SJed Brown 2750014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2751d382aafbSBarry Smith 2752d382aafbSBarry Smith /*E 2753d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2754d382aafbSBarry Smith 2755d382aafbSBarry Smith Level: beginner 2756d382aafbSBarry Smith 2757d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2758d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2759d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2760d382aafbSBarry Smith E*/ 27616fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2762d382aafbSBarry Smith 2763d382aafbSBarry Smith /*MC 2764d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2765d382aafbSBarry Smith 2766d382aafbSBarry Smith Level: beginner 2767d382aafbSBarry Smith 2768d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2769eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2770eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2771d382aafbSBarry Smith 2772d382aafbSBarry Smith M*/ 2773d382aafbSBarry Smith 2774d382aafbSBarry Smith /*MC 2775d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2776d382aafbSBarry Smith value into that location 2777d382aafbSBarry Smith 2778d382aafbSBarry Smith Level: beginner 2779d382aafbSBarry Smith 2780d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2781eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2782eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2783d382aafbSBarry Smith 2784d382aafbSBarry Smith M*/ 2785d382aafbSBarry Smith 2786d382aafbSBarry Smith /*MC 2787d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2788d382aafbSBarry Smith 2789d382aafbSBarry Smith Level: beginner 2790d382aafbSBarry Smith 2791d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2792d382aafbSBarry Smith 2793d382aafbSBarry Smith M*/ 2794d382aafbSBarry Smith 2795ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2796ce94432eSBarry Smith 279745487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 279845487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 279945487dadSJed Brown 2800d382aafbSBarry Smith /*S 2801306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2802306c2d5bSBarry Smith 2803306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2804306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 280536be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2806306c2d5bSBarry Smith 2807306c2d5bSBarry Smith Sample Usage: 2808306c2d5bSBarry Smith PetscSubcommCreate() 2809306c2d5bSBarry Smith PetscSubcommSetNumber() 2810306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2811306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2812306c2d5bSBarry Smith PetscSubcommDestroy() 2813d382aafbSBarry Smith 2814d382aafbSBarry Smith Level: advanced 2815d382aafbSBarry Smith 2816d382aafbSBarry Smith Concepts: communicator, create 2817306c2d5bSBarry Smith 2818306c2d5bSBarry Smith Notes: 2819306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2820306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2821306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2822306c2d5bSBarry Smith 2823306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2824306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2825306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2826306c2d5bSBarry Smith 2827306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2828306c2d5bSBarry Smith are performed. 2829306c2d5bSBarry Smith 2830306c2d5bSBarry Smith 2831306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2832306c2d5bSBarry Smith 2833d382aafbSBarry Smith S*/ 2834d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2835d382aafbSBarry Smith 2836d382aafbSBarry Smith struct _n_PetscSubcomm { 2837d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2838d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2839306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 284045487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 284145487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2842708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 284345487dadSJed Brown PetscSubcommType type; 2844e5acf8a4SHong Zhang char *subcommprefix; 2845d382aafbSBarry Smith }; 2846d382aafbSBarry Smith 2847c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2848306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 284936be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 285465d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2855053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2856f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2857e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2858d382aafbSBarry Smith 28590f453b92SJed Brown /*S 28600f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28610f453b92SJed Brown 28620f453b92SJed Brown Level: developer 28630f453b92SJed Brown 28640f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28650f453b92SJed Brown S*/ 28660f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 286713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28680f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 286913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2870137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2871137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2872137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 287313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 287413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28750f453b92SJed Brown 2876471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2877471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2878471ecdacSJed Brown * possible. */ 287935005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2880d382aafbSBarry Smith 2881*9de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 2882*9de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 2883*9de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 2884*9de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 2885*9de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 2886*9de0f6ecSBarry Smith 2887268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 28881f817a21SBarry Smith #undef __FUNCT__ 28891f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 28901f817a21SBarry Smith /*@C 28911f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28921f817a21SBarry Smith 28931f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28941f817a21SBarry Smith 28951f817a21SBarry Smith Input Parameters: 28961f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28971f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28981f817a21SBarry Smith 2899850545d0SSatish Balay Level: intermediate 2900850545d0SSatish Balay 29011f817a21SBarry Smith Options Database: 29021f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 29031f817a21SBarry Smith @*/ 2904dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2905dff31646SBarry Smith { 2906dff31646SBarry Smith size_t len; 2907dff31646SBarry Smith char *vstring; 2908dff31646SBarry Smith PetscErrorCode ierr; 2909dff31646SBarry Smith 29101f817a21SBarry Smith PetscFunctionBegin; 29118d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2912dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 291335005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2914dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2915dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29161f817a21SBarry Smith PetscFunctionReturn(0); 2917dff31646SBarry Smith } 2918dff31646SBarry Smith 2919b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2920fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2921fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2922f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2923fe278a28SBarry Smith 2924f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2925f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2926b967cddfSBarry Smith 292704102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2928dff31646SBarry Smith 292968e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29305dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2931d382aafbSBarry Smith 2932b2566f29SBarry Smith 2933b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2934b2566f29SBarry Smith /* 2935b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2936b2566f29SBarry Smith */ 29378f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2938b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2939b2566f29SBarry Smith #else 2940b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2941b2566f29SBarry Smith #endif 2942b2566f29SBarry Smith 2943d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2944d382aafbSBarry Smith #undef __FUNCT__ 2945d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2946d382aafbSBarry Smith 2947d382aafbSBarry Smith #endif 2948