1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11d382aafbSBarry Smith in the conf/variables definition of PETSC_INCLUDE 12d382aafbSBarry Smith */ 13d382aafbSBarry Smith #include "petscconf.h" 14d382aafbSBarry Smith #include "petscfix.h" 15d382aafbSBarry Smith 16d382aafbSBarry Smith /* ========================================================================== */ 17d382aafbSBarry Smith /* 18d382aafbSBarry Smith This facilitates using C version of PETSc from C++ and 19e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 20d382aafbSBarry Smith */ 21d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 22d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 23d382aafbSBarry Smith #endif 24d382aafbSBarry Smith 25d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 26d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 27d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 28d382aafbSBarry Smith #else 29d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 30d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 31d382aafbSBarry Smith #endif 32d382aafbSBarry Smith /* ========================================================================== */ 33d382aafbSBarry Smith /* 34d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 35d382aafbSBarry Smith Web page 36d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 37d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 38d382aafbSBarry Smith src/docs/website/index.html. 39d382aafbSBarry Smith */ 40d382aafbSBarry Smith #include "petscversion.h" 41301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 42d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 43301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 44d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 45301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 46d382aafbSBarry Smith #else 47301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 48301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 49d382aafbSBarry Smith #endif 50d382aafbSBarry Smith 51d382aafbSBarry Smith /*MC 52d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 53d382aafbSBarry Smith 54d382aafbSBarry Smith Input Parameter: 55d382aafbSBarry Smith . len - length of the string 56d382aafbSBarry Smith 57d382aafbSBarry Smith Output Parameter: 58d382aafbSBarry Smith . version - version string 59d382aafbSBarry Smith 60d382aafbSBarry Smith Level: developer 61d382aafbSBarry Smith 62d382aafbSBarry Smith Usage: 63d382aafbSBarry Smith char version[256]; 64d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 65d382aafbSBarry Smith 66d382aafbSBarry Smith Fortran Note: 67d382aafbSBarry Smith This routine is not supported in Fortran. 68d382aafbSBarry Smith 69d382aafbSBarry Smith .seealso: PetscGetProgramName() 70d382aafbSBarry Smith 71d382aafbSBarry Smith M*/ 72d382aafbSBarry Smith 73d382aafbSBarry Smith /* ========================================================================== */ 74d382aafbSBarry Smith 75d382aafbSBarry Smith /* 76d382aafbSBarry Smith Currently cannot check formatting for PETSc print statements because we have our 77d382aafbSBarry Smith own format %D and %G 78d382aafbSBarry Smith */ 79d382aafbSBarry Smith #undef PETSC_PRINTF_FORMAT_CHECK 80d382aafbSBarry Smith #define PETSC_PRINTF_FORMAT_CHECK(a,b) 81d382aafbSBarry Smith #undef PETSC_FPRINTF_FORMAT_CHECK 82d382aafbSBarry Smith #define PETSC_FPRINTF_FORMAT_CHECK(a,b) 83d382aafbSBarry Smith 84d382aafbSBarry Smith /* 85e2e64c6bSBarry Smith Fixes for ./configure time choices which impact our interface. Currently only 86d382aafbSBarry Smith calling conventions and extra compiler checking falls under this category. 87d382aafbSBarry Smith */ 88d382aafbSBarry Smith #if !defined(PETSC_STDCALL) 89d382aafbSBarry Smith #define PETSC_STDCALL 90d382aafbSBarry Smith #endif 91d382aafbSBarry Smith #if !defined(PETSC_TEMPLATE) 92d382aafbSBarry Smith #define PETSC_TEMPLATE 93d382aafbSBarry Smith #endif 94d382aafbSBarry Smith #if !defined(PETSC_HAVE_DLL_EXPORT) 95d382aafbSBarry Smith #define PETSC_DLL_EXPORT 96d382aafbSBarry Smith #define PETSC_DLL_IMPORT 97d382aafbSBarry Smith #endif 988738c821SJed Brown #if !defined(PETSCSYS_DLLEXPORT) 998738c821SJed Brown #define PETSCSYS_DLLEXPORT 100d382aafbSBarry Smith #endif 101d382aafbSBarry Smith #if !defined(PETSCVEC_DLLEXPORT) 102d382aafbSBarry Smith #define PETSCVEC_DLLEXPORT 103d382aafbSBarry Smith #endif 104d382aafbSBarry Smith #if !defined(PETSCMAT_DLLEXPORT) 105d382aafbSBarry Smith #define PETSCMAT_DLLEXPORT 106d382aafbSBarry Smith #endif 107d382aafbSBarry Smith #if !defined(PETSCDM_DLLEXPORT) 108d382aafbSBarry Smith #define PETSCDM_DLLEXPORT 109d382aafbSBarry Smith #endif 110d382aafbSBarry Smith #if !defined(PETSCKSP_DLLEXPORT) 111d382aafbSBarry Smith #define PETSCKSP_DLLEXPORT 112d382aafbSBarry Smith #endif 113d382aafbSBarry Smith #if !defined(PETSCSNES_DLLEXPORT) 114d382aafbSBarry Smith #define PETSCSNES_DLLEXPORT 115d382aafbSBarry Smith #endif 116d382aafbSBarry Smith #if !defined(PETSCTS_DLLEXPORT) 117d382aafbSBarry Smith #define PETSCTS_DLLEXPORT 118d382aafbSBarry Smith #endif 119d382aafbSBarry Smith #if !defined(PETSCFORTRAN_DLLEXPORT) 120d382aafbSBarry Smith #define PETSCFORTRAN_DLLEXPORT 121d382aafbSBarry Smith #endif 122d382aafbSBarry Smith /* ========================================================================== */ 123d382aafbSBarry Smith 124d382aafbSBarry Smith /* 125d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 126d382aafbSBarry Smith 127d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 128d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 129d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 130d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 131d382aafbSBarry Smith mpicxx.h directly in their code 132d382aafbSBarry Smith */ 133d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 134d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 135d382aafbSBarry Smith #include "mpi.h" 13665013866SBarry Smith 137d382aafbSBarry Smith /* 138d382aafbSBarry Smith Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 139d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 140d382aafbSBarry Smith 141d382aafbSBarry Smith The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 142d382aafbSBarry Smith */ 143d382aafbSBarry Smith #include <stdio.h> 144d382aafbSBarry Smith 145d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 146d382aafbSBarry Smith #if !defined(MPIAPI) 147d382aafbSBarry Smith #define MPIAPI 148d382aafbSBarry Smith #endif 149d382aafbSBarry Smith 150b3506946SBarry Smith 151d382aafbSBarry Smith /*MC 152d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 153d382aafbSBarry Smith 154d382aafbSBarry Smith Level: beginner 155d382aafbSBarry Smith 156d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 157d382aafbSBarry Smith M*/ 158d382aafbSBarry Smith typedef int PetscErrorCode; 159d382aafbSBarry Smith 160d382aafbSBarry Smith /*MC 161d382aafbSBarry Smith 162503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 163d382aafbSBarry Smith (internal integer in the data structure used for error 164d382aafbSBarry Smith checking). These are all defined by an offset from the lowest 1650700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 166d382aafbSBarry Smith 167d382aafbSBarry Smith Level: advanced 168d382aafbSBarry Smith 1690700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 170d382aafbSBarry Smith M*/ 1710700a824SBarry Smith typedef int PetscClassId; 172d382aafbSBarry Smith 173d382aafbSBarry Smith /*MC 174c60ec953SBarry Smith PetscLogEvent - id used to identify PETSc or user events which timed portions (blocks of executable) 175c60ec953SBarry Smith code. 176d382aafbSBarry Smith 177d382aafbSBarry Smith Level: intermediate 178d382aafbSBarry Smith 179d382aafbSBarry Smith .seealso: PetscLogEventRegister(), PetscLogEventBegin(), PetscLogEventEnd(), PetscLogStage 180d382aafbSBarry Smith M*/ 181d382aafbSBarry Smith typedef int PetscLogEvent; 182d382aafbSBarry Smith 183d382aafbSBarry Smith /*MC 184c60ec953SBarry Smith PetscLogStage - id used to identify user stages (phases, sections) of runs - for logging 185d382aafbSBarry Smith 186d382aafbSBarry Smith Level: intermediate 187d382aafbSBarry Smith 188d382aafbSBarry Smith .seealso: PetscLogStageRegister(), PetscLogStageBegin(), PetscLogStageEnd(), PetscLogEvent 189d382aafbSBarry Smith M*/ 190d382aafbSBarry Smith typedef int PetscLogStage; 191d382aafbSBarry Smith 192d382aafbSBarry Smith /*MC 193d382aafbSBarry Smith PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 194d382aafbSBarry Smith 195d382aafbSBarry Smith Level: intermediate 196d382aafbSBarry Smith 197d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1983b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 1993b2a8c54SBarry Smith (except on very rare BLAS/LAPACK implementations that support 64 bit integers). 2003b2a8c54SBarry Smith 2013b2a8c54SBarry Smith PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 2023b2a8c54SBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 2033b2a8c54SBarry Smith 2043b2a8c54SBarry Smith PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2053b2a8c54SBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 206d382aafbSBarry Smith 207d382aafbSBarry Smith .seealso: PetscMPIInt, PetscInt 208d382aafbSBarry Smith 209d382aafbSBarry Smith M*/ 210d382aafbSBarry Smith typedef int PetscBLASInt; 211d382aafbSBarry Smith 212d382aafbSBarry Smith /*MC 213d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 214d382aafbSBarry Smith 215d382aafbSBarry Smith Level: intermediate 216d382aafbSBarry Smith 217d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2183b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 219d382aafbSBarry Smith 2203b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 221d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 222d382aafbSBarry Smith 2233b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 224d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 225d382aafbSBarry Smith 226d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 227d382aafbSBarry Smith 228d382aafbSBarry Smith M*/ 229d382aafbSBarry Smith typedef int PetscMPIInt; 230d382aafbSBarry Smith 231d382aafbSBarry Smith /*MC 232d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 233d382aafbSBarry Smith 234d382aafbSBarry Smith Level: intermediate 235d382aafbSBarry Smith 236d382aafbSBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 237d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 238d382aafbSBarry Smith 239d382aafbSBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 240d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 241d382aafbSBarry Smith 242d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 243d382aafbSBarry Smith M*/ 244d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 245d382aafbSBarry Smith 246d382aafbSBarry Smith /*MC 247d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2483b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 249d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 250d382aafbSBarry Smith 251d382aafbSBarry Smith Level: intermediate 252d382aafbSBarry Smith 253d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 254d382aafbSBarry Smith M*/ 255d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 256d382aafbSBarry Smith typedef long long PetscInt; 257d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 258d382aafbSBarry Smith #else 259d382aafbSBarry Smith typedef int PetscInt; 260d382aafbSBarry Smith #define MPIU_INT MPI_INT 261d382aafbSBarry Smith #endif 262d382aafbSBarry Smith 263503cfb0cSBarry Smith /* 264503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 265503cfb0cSBarry Smith */ 266d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 267d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 268d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 269d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 270d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 271d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 272d382aafbSBarry Smith #else 273d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 274d382aafbSBarry Smith #endif 275d382aafbSBarry Smith 276d382aafbSBarry Smith 277d382aafbSBarry Smith /* 278d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 279d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 280d382aafbSBarry Smith */ 281d382aafbSBarry Smith 282d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 283d382aafbSBarry Smith 284d382aafbSBarry Smith /* 285d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 286d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 287d382aafbSBarry Smith */ 288d382aafbSBarry Smith extern FILE* PETSC_STDERR; 289d382aafbSBarry Smith 290d382aafbSBarry Smith /* 291d382aafbSBarry Smith PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 292d382aafbSBarry Smith in conjunction with PETSC_STDOUT, or by itself. 293d382aafbSBarry Smith */ 294d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD; 295d382aafbSBarry Smith 296d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 297d382aafbSBarry Smith /*MC 298d382aafbSBarry Smith PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 299d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 300d382aafbSBarry Smith 301d382aafbSBarry Smith Synopsis: 302d382aafbSBarry Smith PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 303d382aafbSBarry Smith 304eca87e8dSBarry Smith Not collective 305eca87e8dSBarry Smith 306d382aafbSBarry Smith Level: developer 307d382aafbSBarry Smith 308d382aafbSBarry Smith Example: 309d382aafbSBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 310d382aafbSBarry Smith PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 311d382aafbSBarry Smith 312d382aafbSBarry Smith .seealso: PetscPolymorphicFunction() 313d382aafbSBarry Smith 314d382aafbSBarry Smith M*/ 315d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 316d382aafbSBarry Smith 317d382aafbSBarry Smith /*MC 318d382aafbSBarry Smith PetscPolymorphicScalar - allows defining a C++ polymorphic version of 319d382aafbSBarry Smith a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 320d382aafbSBarry Smith 321d382aafbSBarry Smith Synopsis: 322d382aafbSBarry Smith PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 323d382aafbSBarry Smith 324eca87e8dSBarry Smith Not collective 325eca87e8dSBarry Smith 326d382aafbSBarry Smith Level: developer 327d382aafbSBarry Smith 328d382aafbSBarry Smith Example: 329d382aafbSBarry Smith PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 330d382aafbSBarry Smith PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 331d382aafbSBarry Smith 332d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 333d382aafbSBarry Smith 334d382aafbSBarry Smith M*/ 335d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 336d382aafbSBarry Smith 337d382aafbSBarry Smith /*MC 338d382aafbSBarry Smith PetscPolymorphicFunction - allows defining a C++ polymorphic version of 339d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 340d382aafbSBarry Smith and returns the computed value (istead of an error code) 341d382aafbSBarry Smith 342d382aafbSBarry Smith Synopsis: 343d382aafbSBarry Smith PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 344d382aafbSBarry Smith 345eca87e8dSBarry Smith Not collective 346eca87e8dSBarry Smith 347d382aafbSBarry Smith Level: developer 348d382aafbSBarry Smith 349d382aafbSBarry Smith Example: 350d382aafbSBarry Smith PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 351d382aafbSBarry Smith PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 352d382aafbSBarry Smith 353d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine() 354d382aafbSBarry Smith 355d382aafbSBarry Smith M*/ 356d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 357d382aafbSBarry Smith 358d382aafbSBarry Smith #else 359d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) 360d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) 361d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) 362d382aafbSBarry Smith #endif 363d382aafbSBarry Smith 364d382aafbSBarry Smith /*MC 365d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 366d382aafbSBarry Smith 367d382aafbSBarry Smith Synopsis: 368d382aafbSBarry Smith PetscTruth PetscUnlikely(PetscTruth cond) 369d382aafbSBarry Smith 370eca87e8dSBarry Smith Not Collective 371eca87e8dSBarry Smith 372d382aafbSBarry Smith Input Parameters: 373d382aafbSBarry Smith . cond - condition or expression 374d382aafbSBarry Smith 375d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 376d382aafbSBarry Smith branch is unlikely. 377d382aafbSBarry Smith 378d382aafbSBarry Smith Level: advanced 379d382aafbSBarry Smith 380d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 381d382aafbSBarry Smith M*/ 382d382aafbSBarry Smith 383d382aafbSBarry Smith /*MC 384d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 385d382aafbSBarry Smith 386d382aafbSBarry Smith Synopsis: 387d382aafbSBarry Smith PetscTruth PetscUnlikely(PetscTruth cond) 388d382aafbSBarry Smith 389eca87e8dSBarry Smith Not Collective 390eca87e8dSBarry Smith 391d382aafbSBarry Smith Input Parameters: 392d382aafbSBarry Smith . cond - condition or expression 393d382aafbSBarry Smith 394d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 395d382aafbSBarry Smith branch is likely. 396d382aafbSBarry Smith 397d382aafbSBarry Smith Level: advanced 398d382aafbSBarry Smith 399d382aafbSBarry Smith .seealso: PetscUnlikely() 400d382aafbSBarry Smith M*/ 401d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 402d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 403d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 404d382aafbSBarry Smith #else 405cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 406cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 407d382aafbSBarry Smith #endif 408d382aafbSBarry Smith 409d382aafbSBarry Smith /* 410d382aafbSBarry Smith Extern indicates a PETSc function defined elsewhere 411d382aafbSBarry Smith */ 412d382aafbSBarry Smith #if !defined(EXTERN) 413d382aafbSBarry Smith #define EXTERN extern 414d382aafbSBarry Smith #endif 415d382aafbSBarry Smith 416d382aafbSBarry Smith /* 417d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 418d382aafbSBarry Smith */ 419d382aafbSBarry Smith #include "petscmath.h" 420d382aafbSBarry Smith 421d382aafbSBarry Smith /* 422d382aafbSBarry Smith Declare extern C stuff after including external header files 423d382aafbSBarry Smith */ 424d382aafbSBarry Smith 425d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 426d382aafbSBarry Smith 427d382aafbSBarry Smith /* 428d382aafbSBarry Smith Basic PETSc constants 429d382aafbSBarry Smith */ 430d382aafbSBarry Smith 431d382aafbSBarry Smith /*E 432503cfb0cSBarry Smith PetscTruth - Logical variable. Actually an int in C and a logical in Fortran. 433d382aafbSBarry Smith 434d382aafbSBarry Smith Level: beginner 435d382aafbSBarry Smith 43634e82e7dSBarry Smith Developer Note: Why have PetscTruth, why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 43734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 43834e82e7dSBarry Smith 439d382aafbSBarry Smith E*/ 440d382aafbSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscTruth; 441d382aafbSBarry Smith extern const char *PetscTruths[]; 442d382aafbSBarry Smith 443d382aafbSBarry Smith /*MC 444d382aafbSBarry Smith PETSC_FALSE - False value of PetscTruth 445d382aafbSBarry Smith 446d382aafbSBarry Smith Level: beginner 447d382aafbSBarry Smith 448d382aafbSBarry Smith Note: Zero integer 449d382aafbSBarry Smith 450d382aafbSBarry Smith .seealso: PetscTruth, PETSC_TRUE 451d382aafbSBarry Smith M*/ 452d382aafbSBarry Smith 453d382aafbSBarry Smith /*MC 454d382aafbSBarry Smith PETSC_TRUE - True value of PetscTruth 455d382aafbSBarry Smith 456d382aafbSBarry Smith Level: beginner 457d382aafbSBarry Smith 458d382aafbSBarry Smith Note: Nonzero integer 459d382aafbSBarry Smith 460d382aafbSBarry Smith .seealso: PetscTruth, PETSC_FALSE 461d382aafbSBarry Smith M*/ 462d382aafbSBarry Smith 463d382aafbSBarry Smith /*MC 464d382aafbSBarry Smith PETSC_YES - Alias for PETSC_TRUE 465d382aafbSBarry Smith 466d382aafbSBarry Smith Level: beginner 467d382aafbSBarry Smith 468d382aafbSBarry Smith Note: Zero integer 469d382aafbSBarry Smith 470d382aafbSBarry Smith .seealso: PetscTruth, PETSC_TRUE, PETSC_FALSE, PETSC_NO 471d382aafbSBarry Smith M*/ 472d382aafbSBarry Smith #define PETSC_YES PETSC_TRUE 473d382aafbSBarry Smith 474d382aafbSBarry Smith /*MC 475d382aafbSBarry Smith PETSC_NO - Alias for PETSC_FALSE 476d382aafbSBarry Smith 477d382aafbSBarry Smith Level: beginner 478d382aafbSBarry Smith 479d382aafbSBarry Smith Note: Nonzero integer 480d382aafbSBarry Smith 481d382aafbSBarry Smith .seealso: PetscTruth, PETSC_TRUE, PETSC_FALSE, PETSC_YES 482d382aafbSBarry Smith M*/ 483d382aafbSBarry Smith #define PETSC_NO PETSC_FALSE 484d382aafbSBarry Smith 485d382aafbSBarry Smith /*MC 486d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 487d382aafbSBarry Smith 488d382aafbSBarry Smith Level: beginner 489d382aafbSBarry Smith 490d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 491d382aafbSBarry Smith some default 492d382aafbSBarry Smith 493d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 494503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 495d382aafbSBarry Smith 49634e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 49734e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 49834e82e7dSBarry Smith 499d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 500d382aafbSBarry Smith 501d382aafbSBarry Smith M*/ 502d382aafbSBarry Smith #define PETSC_NULL 0 503d382aafbSBarry Smith 504d382aafbSBarry Smith /*MC 505d382aafbSBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 506d382aafbSBarry Smith where you wish PETSc to use the default. 507d382aafbSBarry Smith 508d382aafbSBarry Smith Level: beginner 509d382aafbSBarry Smith 510d382aafbSBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 511d382aafbSBarry Smith 512d382aafbSBarry Smith M*/ 513d382aafbSBarry Smith #define PETSC_DECIDE -1 514d382aafbSBarry Smith 515d382aafbSBarry Smith /*MC 516d382aafbSBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 517d382aafbSBarry Smith where you wish PETSc to use the default. 518d382aafbSBarry Smith 519d382aafbSBarry Smith Level: beginner 520d382aafbSBarry Smith 521d382aafbSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 522d382aafbSBarry Smith 523d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 524d382aafbSBarry Smith 525d382aafbSBarry Smith M*/ 526d382aafbSBarry Smith #define PETSC_DEFAULT -2 527d382aafbSBarry Smith 528d382aafbSBarry Smith 529d382aafbSBarry Smith /*MC 530d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 531d382aafbSBarry Smith 532d382aafbSBarry Smith Level: beginner 533d382aafbSBarry Smith 534d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 535d382aafbSBarry Smith some default 536d382aafbSBarry Smith 537d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 538d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 539d382aafbSBarry Smith 540d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 541d382aafbSBarry Smith 542d382aafbSBarry Smith M*/ 543d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 544d382aafbSBarry Smith 545d382aafbSBarry Smith /*MC 546d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 547d382aafbSBarry Smith where you wish PETSc to compute the required value. 548d382aafbSBarry Smith 549d382aafbSBarry Smith Level: beginner 550d382aafbSBarry Smith 551d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 552d382aafbSBarry Smith 553d382aafbSBarry Smith M*/ 554d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 555d382aafbSBarry Smith 556d382aafbSBarry Smith /*MC 557d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 558d382aafbSBarry Smith all the processs that PETSc knows about. 559d382aafbSBarry Smith 560d382aafbSBarry Smith Level: beginner 561d382aafbSBarry Smith 562d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 563d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 564d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 565d382aafbSBarry Smith PetscInitialize() 566d382aafbSBarry Smith 567d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 568d382aafbSBarry Smith 569d382aafbSBarry Smith M*/ 570d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 571d382aafbSBarry Smith 572d382aafbSBarry Smith /*MC 573503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 574d382aafbSBarry Smith 575d382aafbSBarry Smith Level: beginner 576d382aafbSBarry Smith 577d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 578d382aafbSBarry Smith 579d382aafbSBarry Smith M*/ 580d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 581d382aafbSBarry Smith 5828738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscTruth PetscInitializeCalled; 5838738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscTruth PetscFinalizeCalled; 584d382aafbSBarry Smith 5858738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 5868738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 5878738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscCommDestroy(MPI_Comm*); 588d382aafbSBarry Smith 589d382aafbSBarry Smith /*MC 590d382aafbSBarry Smith PetscMalloc - Allocates memory 591d382aafbSBarry Smith 592eca87e8dSBarry Smith Synopsis: 593eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 594eca87e8dSBarry Smith 595eca87e8dSBarry Smith Not Collective 596eca87e8dSBarry Smith 597d382aafbSBarry Smith Input Parameter: 598d382aafbSBarry Smith . m - number of bytes to allocate 599d382aafbSBarry Smith 600d382aafbSBarry Smith Output Parameter: 601d382aafbSBarry Smith . result - memory allocated 602d382aafbSBarry Smith 603d382aafbSBarry Smith Level: beginner 604d382aafbSBarry Smith 605d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 606d382aafbSBarry Smith 607d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 608d382aafbSBarry Smith properly handle not freeing the null pointer. 609d382aafbSBarry Smith 610d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 611d382aafbSBarry Smith 612d382aafbSBarry Smith Concepts: memory allocation 613d382aafbSBarry Smith 614d382aafbSBarry Smith M*/ 6152714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 616d382aafbSBarry Smith 617d382aafbSBarry Smith /*MC 618503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 619d382aafbSBarry Smith 620d382aafbSBarry Smith Synopsis: 621d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 622d382aafbSBarry Smith 623eca87e8dSBarry Smith Not Collective 624eca87e8dSBarry Smith 625eca87e8dSBarry Smith Input Parameters: 626eca87e8dSBarry Smith . addr - address to align (any pointer type) 627eca87e8dSBarry Smith 628d382aafbSBarry Smith Level: developer 629d382aafbSBarry Smith 630d382aafbSBarry Smith .seealso: PetscMallocAlign() 631d382aafbSBarry Smith 632d382aafbSBarry Smith Concepts: memory allocation 633d382aafbSBarry Smith M*/ 634d382aafbSBarry Smith #if defined PETSC_UINTPTR_T 635d382aafbSBarry Smith # define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 636d382aafbSBarry Smith #else 637d382aafbSBarry Smith # define PetscAddrAlign(a) (void*)(a) 638d382aafbSBarry Smith #endif 639d382aafbSBarry Smith 640d382aafbSBarry Smith /*MC 641503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 642d382aafbSBarry Smith 643eca87e8dSBarry Smith Synopsis: 644eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 645eca87e8dSBarry Smith 646eca87e8dSBarry Smith Not Collective 647eca87e8dSBarry Smith 648d382aafbSBarry Smith Input Parameter: 649d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 650d382aafbSBarry Smith . t1 - type of first memory elements 651d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 652d382aafbSBarry Smith - t2 - type of second memory elements 653d382aafbSBarry Smith 654d382aafbSBarry Smith Output Parameter: 655d382aafbSBarry Smith + r1 - memory allocated in first chunk 656d382aafbSBarry Smith - r2 - memory allocated in second chunk 657d382aafbSBarry Smith 658d382aafbSBarry Smith Level: developer 659d382aafbSBarry Smith 660d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 661d382aafbSBarry Smith 662d382aafbSBarry Smith Concepts: memory allocation 663d382aafbSBarry Smith 664d382aafbSBarry Smith M*/ 665d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 666d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 667d382aafbSBarry Smith #else 6683b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 669d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 670d382aafbSBarry Smith #endif 671d382aafbSBarry Smith 672d382aafbSBarry Smith /*MC 673503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 674d382aafbSBarry Smith 675eca87e8dSBarry Smith Synopsis: 676eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 677eca87e8dSBarry Smith 678eca87e8dSBarry Smith Not Collective 679eca87e8dSBarry Smith 680d382aafbSBarry Smith Input Parameter: 681d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 682d382aafbSBarry Smith . t1 - type of first memory elements 683d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 684d382aafbSBarry Smith . t2 - type of second memory elements 685d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 686d382aafbSBarry Smith - t3 - type of third memory elements 687d382aafbSBarry Smith 688d382aafbSBarry Smith Output Parameter: 689d382aafbSBarry Smith + r1 - memory allocated in first chunk 690d382aafbSBarry Smith . r2 - memory allocated in second chunk 691d382aafbSBarry Smith - r3 - memory allocated in third chunk 692d382aafbSBarry Smith 693d382aafbSBarry Smith Level: developer 694d382aafbSBarry Smith 695d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 696d382aafbSBarry Smith 697d382aafbSBarry Smith Concepts: memory allocation 698d382aafbSBarry Smith 699d382aafbSBarry Smith M*/ 700d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 701d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 702d382aafbSBarry Smith #else 7033b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 704d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 705d382aafbSBarry Smith #endif 706d382aafbSBarry Smith 707d382aafbSBarry Smith /*MC 708503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 709d382aafbSBarry Smith 710eca87e8dSBarry Smith Synopsis: 711eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 712eca87e8dSBarry Smith 713eca87e8dSBarry Smith Not Collective 714eca87e8dSBarry Smith 715d382aafbSBarry Smith Input Parameter: 716d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 717d382aafbSBarry Smith . t1 - type of first memory elements 718d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 719d382aafbSBarry Smith . t2 - type of second memory elements 720d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 721d382aafbSBarry Smith . t3 - type of third memory elements 722d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 723d382aafbSBarry Smith - t4 - type of fourth memory elements 724d382aafbSBarry Smith 725d382aafbSBarry Smith Output Parameter: 726d382aafbSBarry Smith + r1 - memory allocated in first chunk 727d382aafbSBarry Smith . r2 - memory allocated in second chunk 728d382aafbSBarry Smith . r3 - memory allocated in third chunk 729d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 730d382aafbSBarry Smith 731d382aafbSBarry Smith Level: developer 732d382aafbSBarry Smith 733d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 734d382aafbSBarry Smith 735d382aafbSBarry Smith Concepts: memory allocation 736d382aafbSBarry Smith 737d382aafbSBarry Smith M*/ 738d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 739d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 740d382aafbSBarry Smith #else 741d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 7423b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 743d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 744d382aafbSBarry Smith #endif 745d382aafbSBarry Smith 746d382aafbSBarry Smith /*MC 747503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 748d382aafbSBarry Smith 749eca87e8dSBarry Smith Synopsis: 750eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 751eca87e8dSBarry Smith 752eca87e8dSBarry Smith Not Collective 753eca87e8dSBarry Smith 754d382aafbSBarry Smith Input Parameter: 755d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 756d382aafbSBarry Smith . t1 - type of first memory elements 757d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 758d382aafbSBarry Smith . t2 - type of second memory elements 759d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 760d382aafbSBarry Smith . t3 - type of third memory elements 761d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 762d382aafbSBarry Smith . t4 - type of fourth memory elements 763d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 764d382aafbSBarry Smith - t5 - type of fifth memory elements 765d382aafbSBarry Smith 766d382aafbSBarry Smith Output Parameter: 767d382aafbSBarry Smith + r1 - memory allocated in first chunk 768d382aafbSBarry Smith . r2 - memory allocated in second chunk 769d382aafbSBarry Smith . r3 - memory allocated in third chunk 770d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 771d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 772d382aafbSBarry Smith 773d382aafbSBarry Smith Level: developer 774d382aafbSBarry Smith 775d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 776d382aafbSBarry Smith 777d382aafbSBarry Smith Concepts: memory allocation 778d382aafbSBarry Smith 779d382aafbSBarry Smith M*/ 780d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 781d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 782d382aafbSBarry Smith #else 783d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 7843b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 785d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 786d382aafbSBarry Smith #endif 787d382aafbSBarry Smith 788d382aafbSBarry Smith 789d382aafbSBarry Smith /*MC 790503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 791d382aafbSBarry Smith 792eca87e8dSBarry Smith Synopsis: 793eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 794eca87e8dSBarry Smith 795eca87e8dSBarry Smith Not Collective 796eca87e8dSBarry Smith 797d382aafbSBarry Smith Input Parameter: 798d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 799d382aafbSBarry Smith . t1 - type of first memory elements 800d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 801d382aafbSBarry Smith . t2 - type of second memory elements 802d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 803d382aafbSBarry Smith . t3 - type of third memory elements 804d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 805d382aafbSBarry Smith . t4 - type of fourth memory elements 806d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 807d382aafbSBarry Smith . t5 - type of fifth memory elements 808d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 809d382aafbSBarry Smith - t6 - type of sixth memory elements 810d382aafbSBarry Smith 811d382aafbSBarry Smith Output Parameter: 812d382aafbSBarry Smith + r1 - memory allocated in first chunk 813d382aafbSBarry Smith . r2 - memory allocated in second chunk 814d382aafbSBarry Smith . r3 - memory allocated in third chunk 815d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 816d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 817d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 818d382aafbSBarry Smith 819d382aafbSBarry Smith Level: developer 820d382aafbSBarry Smith 821d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 822d382aafbSBarry Smith 823d382aafbSBarry Smith Concepts: memory allocation 824d382aafbSBarry Smith 825d382aafbSBarry Smith M*/ 826d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 827d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 828d382aafbSBarry Smith #else 829d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 8303b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 831d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 832d382aafbSBarry Smith #endif 833d382aafbSBarry Smith 834d382aafbSBarry Smith /*MC 835503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 836d382aafbSBarry Smith 837eca87e8dSBarry Smith Synopsis: 838eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 839eca87e8dSBarry Smith 840eca87e8dSBarry Smith Not Collective 841eca87e8dSBarry Smith 842d382aafbSBarry Smith Input Parameter: 843d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 844d382aafbSBarry Smith . t1 - type of first memory elements 845d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 846d382aafbSBarry Smith . t2 - type of second memory elements 847d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 848d382aafbSBarry Smith . t3 - type of third memory elements 849d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 850d382aafbSBarry Smith . t4 - type of fourth memory elements 851d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 852d382aafbSBarry Smith . t5 - type of fifth memory elements 853d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 854d382aafbSBarry Smith . t6 - type of sixth memory elements 855d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 856d382aafbSBarry Smith - t7 - type of sixth memory elements 857d382aafbSBarry Smith 858d382aafbSBarry Smith Output Parameter: 859d382aafbSBarry Smith + r1 - memory allocated in first chunk 860d382aafbSBarry Smith . r2 - memory allocated in second chunk 861d382aafbSBarry Smith . r3 - memory allocated in third chunk 862d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 863d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 864d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 865eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 866d382aafbSBarry Smith 867d382aafbSBarry Smith Level: developer 868d382aafbSBarry Smith 869d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 870d382aafbSBarry Smith 871d382aafbSBarry Smith Concepts: memory allocation 872d382aafbSBarry Smith 873d382aafbSBarry Smith M*/ 874d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 875d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 876d382aafbSBarry Smith #else 877d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 8783b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 879d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 880d382aafbSBarry Smith #endif 881d382aafbSBarry Smith 882d382aafbSBarry Smith /*MC 883503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 884d382aafbSBarry Smith 885eca87e8dSBarry Smith Synopsis: 886eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 887eca87e8dSBarry Smith 888eca87e8dSBarry Smith Not Collective 889eca87e8dSBarry Smith 890d382aafbSBarry Smith Input Parameter: 891d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 892d382aafbSBarry Smith 893d382aafbSBarry Smith Output Parameter: 894d382aafbSBarry Smith . result - memory allocated 895d382aafbSBarry Smith 896d382aafbSBarry Smith Level: beginner 897d382aafbSBarry Smith 898d382aafbSBarry Smith .seealso: PetscFree(), PetscMalloc() 899d382aafbSBarry Smith 900d382aafbSBarry Smith Concepts: memory allocation 901d382aafbSBarry Smith 902d382aafbSBarry Smith M*/ 903d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 904d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 905d382aafbSBarry Smith 906d382aafbSBarry Smith /*MC 907d382aafbSBarry Smith PetscFree - Frees memory 908d382aafbSBarry Smith 909eca87e8dSBarry Smith Synopsis: 910eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 911eca87e8dSBarry Smith 912eca87e8dSBarry Smith Not Collective 913eca87e8dSBarry Smith 914d382aafbSBarry Smith Input Parameter: 915d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 916d382aafbSBarry Smith 917d382aafbSBarry Smith Level: beginner 918d382aafbSBarry Smith 919d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 920d382aafbSBarry Smith 921d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 922d382aafbSBarry Smith 923d382aafbSBarry Smith Concepts: memory allocation 924d382aafbSBarry Smith 925d382aafbSBarry Smith M*/ 92681dabb53SJed Brown #define PetscFree(a) ((a) ? ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || (((a) = 0),0)) : 0) 927d382aafbSBarry Smith 928d382aafbSBarry Smith /*MC 929d382aafbSBarry Smith PetscFreeVoid - Frees memory 930d382aafbSBarry Smith 931d382aafbSBarry Smith Synopsis: 932d382aafbSBarry Smith void PetscFreeVoid(void *memory) 933d382aafbSBarry Smith 934eca87e8dSBarry Smith Not Collective 935eca87e8dSBarry Smith 936eca87e8dSBarry Smith Input Parameter: 937eca87e8dSBarry Smith . memory - memory to free 938eca87e8dSBarry Smith 939d382aafbSBarry Smith Level: beginner 940d382aafbSBarry Smith 941d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 942d382aafbSBarry Smith 943d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 944d382aafbSBarry Smith 945d382aafbSBarry Smith Concepts: memory allocation 946d382aafbSBarry Smith 947d382aafbSBarry Smith M*/ 9482714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 949d382aafbSBarry Smith 950d382aafbSBarry Smith 951d382aafbSBarry Smith /*MC 952d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 953d382aafbSBarry Smith 954eca87e8dSBarry Smith Synopsis: 955eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 956eca87e8dSBarry Smith 957eca87e8dSBarry Smith Not Collective 958eca87e8dSBarry Smith 959d382aafbSBarry Smith Input Parameter: 960d382aafbSBarry Smith + memory1 - memory to free 961d382aafbSBarry Smith - memory2 - 2nd memory to free 962d382aafbSBarry Smith 963d382aafbSBarry Smith Level: developer 964d382aafbSBarry Smith 965d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 966d382aafbSBarry Smith 967d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 968d382aafbSBarry Smith 969d382aafbSBarry Smith Concepts: memory allocation 970d382aafbSBarry Smith 971d382aafbSBarry Smith M*/ 972d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 973d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 974d382aafbSBarry Smith #else 97581dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 976d382aafbSBarry Smith #endif 977d382aafbSBarry Smith 978d382aafbSBarry Smith /*MC 979d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 980d382aafbSBarry Smith 981eca87e8dSBarry Smith Synopsis: 982eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 983eca87e8dSBarry Smith 984eca87e8dSBarry Smith Not Collective 985eca87e8dSBarry Smith 986d382aafbSBarry Smith Input Parameter: 987d382aafbSBarry Smith + memory1 - memory to free 988d382aafbSBarry Smith . memory2 - 2nd memory to free 989d382aafbSBarry Smith - memory3 - 3rd memory to free 990d382aafbSBarry Smith 991d382aafbSBarry Smith Level: developer 992d382aafbSBarry Smith 993d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 994d382aafbSBarry Smith 995d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 996d382aafbSBarry Smith 997d382aafbSBarry Smith Concepts: memory allocation 998d382aafbSBarry Smith 999d382aafbSBarry Smith M*/ 1000d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1001d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1002d382aafbSBarry Smith #else 100381dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 1004d382aafbSBarry Smith #endif 1005d382aafbSBarry Smith 1006d382aafbSBarry Smith /*MC 1007d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1008d382aafbSBarry Smith 1009eca87e8dSBarry Smith Synopsis: 1010eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1011eca87e8dSBarry Smith 1012eca87e8dSBarry Smith Not Collective 1013eca87e8dSBarry Smith 1014d382aafbSBarry Smith Input Parameter: 1015d382aafbSBarry Smith + m1 - memory to free 1016d382aafbSBarry Smith . m2 - 2nd memory to free 1017d382aafbSBarry Smith . m3 - 3rd memory to free 1018d382aafbSBarry Smith - m4 - 4th memory to free 1019d382aafbSBarry Smith 1020d382aafbSBarry Smith Level: developer 1021d382aafbSBarry Smith 1022d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1023d382aafbSBarry Smith 1024d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1025d382aafbSBarry Smith 1026d382aafbSBarry Smith Concepts: memory allocation 1027d382aafbSBarry Smith 1028d382aafbSBarry Smith M*/ 1029d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1030d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1031d382aafbSBarry Smith #else 103281dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1033d382aafbSBarry Smith #endif 1034d382aafbSBarry Smith 1035d382aafbSBarry Smith /*MC 1036d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1037d382aafbSBarry Smith 1038eca87e8dSBarry Smith Synopsis: 1039eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1040eca87e8dSBarry Smith 1041eca87e8dSBarry Smith Not Collective 1042eca87e8dSBarry Smith 1043d382aafbSBarry Smith Input Parameter: 1044d382aafbSBarry Smith + m1 - memory to free 1045d382aafbSBarry Smith . m2 - 2nd memory to free 1046d382aafbSBarry Smith . m3 - 3rd memory to free 1047d382aafbSBarry Smith . m4 - 4th memory to free 1048d382aafbSBarry Smith - m5 - 5th memory to free 1049d382aafbSBarry Smith 1050d382aafbSBarry Smith Level: developer 1051d382aafbSBarry Smith 1052d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1053d382aafbSBarry Smith 1054d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1055d382aafbSBarry Smith 1056d382aafbSBarry Smith Concepts: memory allocation 1057d382aafbSBarry Smith 1058d382aafbSBarry Smith M*/ 1059d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1060d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1061d382aafbSBarry Smith #else 106281dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1063d382aafbSBarry Smith #endif 1064d382aafbSBarry Smith 1065d382aafbSBarry Smith 1066d382aafbSBarry Smith /*MC 1067d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1068d382aafbSBarry Smith 1069eca87e8dSBarry Smith Synopsis: 1070eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1071eca87e8dSBarry Smith 1072eca87e8dSBarry Smith Not Collective 1073eca87e8dSBarry Smith 1074d382aafbSBarry Smith Input Parameter: 1075d382aafbSBarry Smith + m1 - memory to free 1076d382aafbSBarry Smith . m2 - 2nd memory to free 1077d382aafbSBarry Smith . m3 - 3rd memory to free 1078d382aafbSBarry Smith . m4 - 4th memory to free 1079d382aafbSBarry Smith . m5 - 5th memory to free 1080d382aafbSBarry Smith - m6 - 6th memory to free 1081d382aafbSBarry Smith 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith Level: developer 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1088d382aafbSBarry Smith 1089d382aafbSBarry Smith Concepts: memory allocation 1090d382aafbSBarry Smith 1091d382aafbSBarry Smith M*/ 1092d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1093d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1094d382aafbSBarry Smith #else 109581dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1096d382aafbSBarry Smith #endif 1097d382aafbSBarry Smith 1098d382aafbSBarry Smith /*MC 1099d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1100d382aafbSBarry Smith 1101eca87e8dSBarry Smith Synopsis: 1102eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1103eca87e8dSBarry Smith 1104eca87e8dSBarry Smith Not Collective 1105eca87e8dSBarry Smith 1106d382aafbSBarry Smith Input Parameter: 1107d382aafbSBarry Smith + m1 - memory to free 1108d382aafbSBarry Smith . m2 - 2nd memory to free 1109d382aafbSBarry Smith . m3 - 3rd memory to free 1110d382aafbSBarry Smith . m4 - 4th memory to free 1111d382aafbSBarry Smith . m5 - 5th memory to free 1112d382aafbSBarry Smith . m6 - 6th memory to free 1113d382aafbSBarry Smith - m7 - 7th memory to free 1114d382aafbSBarry Smith 1115d382aafbSBarry Smith 1116d382aafbSBarry Smith Level: developer 1117d382aafbSBarry Smith 1118d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1119d382aafbSBarry Smith 1120d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1121d382aafbSBarry Smith PetscMalloc7() 1122d382aafbSBarry Smith 1123d382aafbSBarry Smith Concepts: memory allocation 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith M*/ 1126d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1127d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1128d382aafbSBarry Smith #else 112981dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1130d382aafbSBarry Smith #endif 1131d382aafbSBarry Smith 11328738c821SJed Brown EXTERN PETSCSYS_DLLEXPORT PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 11338738c821SJed Brown EXTERN PETSCSYS_DLLEXPORT PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 11348738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 11358738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocClear(void); 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith /* 1138d382aafbSBarry Smith Routines for tracing memory corruption/bleeding with default PETSc 1139d382aafbSBarry Smith memory allocation 1140d382aafbSBarry Smith */ 11418738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocDump(FILE *); 11428738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocDumpLog(FILE *); 11438738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocGetCurrentUsage(PetscLogDouble *); 11448738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocGetMaximumUsage(PetscLogDouble *); 11458738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocDebug(PetscTruth); 11468738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocValidate(int,const char[],const char[],const char[]); 11478738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMallocSetDumpLog(void); 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith 1150d382aafbSBarry Smith /* 1151d382aafbSBarry Smith Variable type where we stash PETSc object pointers in Fortran. 1152d382aafbSBarry Smith On most machines size(pointer) == sizeof(long) - except windows 1153d382aafbSBarry Smith where its sizeof(long long) 1154d382aafbSBarry Smith */ 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith #if (PETSC_SIZEOF_VOID_P) == (PETSC_SIZEOF_LONG) 1157d382aafbSBarry Smith #define PetscFortranAddr long 1158d382aafbSBarry Smith #elif (PETSC_SIZEOF_VOID_P) == (PETSC_SIZEOF_LONG_LONG) 1159d382aafbSBarry Smith #define PetscFortranAddr long long 1160d382aafbSBarry Smith #else 1161d382aafbSBarry Smith #error "Unknown size for PetscFortranAddr! Send us a bugreport at petsc-maint@mcs.anl.gov" 1162d382aafbSBarry Smith #endif 1163d382aafbSBarry Smith 1164d382aafbSBarry Smith /*E 1165d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1166d382aafbSBarry Smith 1167d382aafbSBarry Smith Level: beginner 1168d382aafbSBarry Smith 1169d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1170d382aafbSBarry Smith 1171d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1172d382aafbSBarry Smith PetscDataTypeGetSize() 1173d382aafbSBarry Smith 1174d382aafbSBarry Smith E*/ 1175d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 11769f7b6320SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_TRUTH=9, PETSC_LONG_DOUBLE = 10, PETSC_QD_DD = 11} PetscDataType; 1177d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1178d382aafbSBarry Smith 1179d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1180d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1181d382aafbSBarry Smith #else 1182d382aafbSBarry Smith #if defined(PETSC_USE_SCALAR_SINGLE) 1183d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 1184d382aafbSBarry Smith #elif defined(PETSC_USE_SCALAR_LONG_DOUBLE) 1185d382aafbSBarry Smith #define PETSC_SCALAR PETSC_LONG_DOUBLE 1186d382aafbSBarry Smith #elif defined(PETSC_USE_SCALAR_INT) 1187d382aafbSBarry Smith #define PETSC_SCALAR PETSC_INT 1188d382aafbSBarry Smith #elif defined(PETSC_USE_SCALAR_QD_DD) 1189d382aafbSBarry Smith #define PETSC_SCALAR PETSC_QD_DD 1190d382aafbSBarry Smith #else 1191d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1192d382aafbSBarry Smith #endif 1193d382aafbSBarry Smith #endif 1194d382aafbSBarry Smith #if defined(PETSC_USE_SCALAR_SINGLE) 1195d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 1196d382aafbSBarry Smith #elif defined(PETSC_USE_SCALAR_LONG_DOUBLE) 1197d382aafbSBarry Smith #define PETSC_REAL PETSC_LONG_DOUBLE 1198d382aafbSBarry Smith #elif defined(PETSC_USE_SCALAR_INT) 1199d382aafbSBarry Smith #define PETSC_REAL PETSC_INT 1200d382aafbSBarry Smith #elif defined(PETSC_USE_SCALAR_QD_DD) 1201d382aafbSBarry Smith #define PETSC_REAL PETSC_QD_DD 1202d382aafbSBarry Smith #else 1203d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1204d382aafbSBarry Smith #endif 1205d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1206d382aafbSBarry Smith 12078738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 12088738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 12098738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDataTypeGetSize(PetscDataType,size_t*); 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith /* 1212d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1213d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1214d382aafbSBarry Smith functionality and/or error checking. 1215d382aafbSBarry Smith */ 12168738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 12178738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMemmove(void*,void *,size_t); 12188738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMemcmp(const void*,const void*,size_t,PetscTruth *); 12198738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrlen(const char[],size_t*); 12208738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrToArray(const char[],int*,char ***); 12218738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrToArrayDestroy(int,char **); 12228738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrcmp(const char[],const char[],PetscTruth *); 12238738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrgrt(const char[],const char[],PetscTruth *); 12248738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrcasecmp(const char[],const char[],PetscTruth*); 12258738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrncmp(const char[],const char[],size_t,PetscTruth*); 12268738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrcpy(char[],const char[]); 12278738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrcat(char[],const char[]); 12288738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrncat(char[],const char[],size_t); 12298738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrncpy(char[],const char[],size_t); 12308738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrchr(const char[],char,char *[]); 12318738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrtolower(char[]); 12328738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrrchr(const char[],char,char *[]); 12338738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrstr(const char[],const char[],char *[]); 12348738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrrstr(const char[],const char[],char *[]); 12358738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrallocpy(const char[],char *[]); 12368738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith /*S 1239d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1240d382aafbSBarry Smith 1241d382aafbSBarry Smith Level: intermediate 1242d382aafbSBarry Smith 1243d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1244d382aafbSBarry Smith S*/ 1245d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1246d382aafbSBarry Smith 12478738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscTokenCreate(const char[],const char,PetscToken*); 12488738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscTokenFind(PetscToken,char *[]); 12498738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscTokenDestroy(PetscToken); 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith /* 1252d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1253d382aafbSBarry Smith */ 12548738c821SJed Brown EXTERN PETSCSYS_DLLEXPORT MPI_Op PetscMaxSum_Op; 1255d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 12568738c821SJed Brown EXTERN PETSCSYS_DLLEXPORT MPI_Op MPIU_SUM; 1257d382aafbSBarry Smith #else 1258d382aafbSBarry Smith #define MPIU_SUM MPI_SUM 1259d382aafbSBarry Smith #endif 12608738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith /*S 1263d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1264d382aafbSBarry Smith 1265d382aafbSBarry Smith Level: beginner 1266d382aafbSBarry Smith 1267d382aafbSBarry Smith Note: This is the base class from which all objects appear. 1268d382aafbSBarry Smith 12691890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1270d382aafbSBarry Smith S*/ 1271d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1272d382aafbSBarry Smith 1273d382aafbSBarry Smith /*S 1274d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1275d382aafbSBarry Smith by string name 1276d382aafbSBarry Smith 1277d382aafbSBarry Smith Level: advanced 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy() 1280d382aafbSBarry Smith S*/ 1281d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith /*E 1284d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1285d382aafbSBarry Smith 1286d382aafbSBarry Smith Level: beginner 1287d382aafbSBarry Smith 1288d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1291d382aafbSBarry Smith 1292d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1293d382aafbSBarry Smith 1294d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1297d382aafbSBarry Smith 1298d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1299d382aafbSBarry Smith E*/ 1300d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1301d382aafbSBarry Smith 1302d382aafbSBarry Smith #include "petscviewer.h" 1303d382aafbSBarry Smith #include "petscoptions.h" 1304d382aafbSBarry Smith 13050700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 13068738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscClassId PETSC_LARGEST_CLASSID; 13078738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscClassId PETSC_OBJECT_CLASSID; 13088738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscClassIdRegister(const char[],PetscClassId *); 1309d382aafbSBarry Smith 1310d382aafbSBarry Smith /* 1311d382aafbSBarry Smith Routines that get memory usage information from the OS 1312d382aafbSBarry Smith */ 13138738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMemoryGetCurrentUsage(PetscLogDouble *); 13148738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMemoryGetMaximumUsage(PetscLogDouble *); 13158738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMemorySetGetMaximumUsage(void); 13168738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMemoryShowUsage(PetscViewer,const char[]); 1317d382aafbSBarry Smith 13188738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscInfoAllow(PetscTruth,const char []); 13198738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetTime(PetscLogDouble*); 13208738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetCPUTime(PetscLogDouble*); 13218738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSleep(PetscReal); 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith /* 1324d382aafbSBarry Smith Initialization of PETSc 1325d382aafbSBarry Smith */ 13268738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscInitialize(int*,char***,const char[],const char[]); 1327d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 13288738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscInitializeNoArguments(void); 13298738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscInitialized(PetscTruth *); 13308738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFinalized(PetscTruth *); 13318738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFinalize(void); 1332d382aafbSBarry Smith EXTERN PetscErrorCode PetscInitializeFortran(void); 13338738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetArgs(int*,char ***); 13348738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetArguments(char ***); 13358738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFreeArguments(char **); 1336d382aafbSBarry Smith 13378738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscEnd(void); 13388738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSysInitializePackage(const char[]); 1339d382aafbSBarry Smith 1340d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 13418738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenMPMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 13428738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenMPSpawn(PetscMPIInt); 13438738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenMPFinalize(void); 13448738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenMPRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 13458738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenMPRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 13468738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenMPFree(MPI_Comm,void*); 13478738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenMPMalloc(MPI_Comm,size_t,void**); 1348d382aafbSBarry Smith 13498738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPythonInitialize(const char[],const char[]); 13508738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPythonFinalize(void); 1351e0ab9aedSLisandro Dalcin EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPythonPrintError(void); 1352d382aafbSBarry Smith 1353d382aafbSBarry Smith /* 1354d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 1355d382aafbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be 1356d382aafbSBarry Smith C++. 1357d382aafbSBarry Smith */ 1358d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1359d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1360d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1361d382aafbSBarry Smith 1362d382aafbSBarry Smith /* 1363d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1364d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1365503cfb0cSBarry Smith 1366503cfb0cSBarry Smith Level: developer 1367503cfb0cSBarry Smith 1368503cfb0cSBarry Smith .seealso: PetscUseMethod() 1369d382aafbSBarry Smith */ 1370d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1371d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1372d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1373d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1374d382aafbSBarry Smith } 1375503cfb0cSBarry Smith 1376503cfb0cSBarry Smith /* 1377503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1378503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1379503cfb0cSBarry Smith 1380503cfb0cSBarry Smith Level: developer 1381503cfb0cSBarry Smith 1382503cfb0cSBarry Smith .seealso: PetscTryMethod() 1383503cfb0cSBarry Smith */ 1384d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1385d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1386d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1387d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1388be015529SBarry Smith else SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1389d382aafbSBarry Smith } 1390503cfb0cSBarry Smith 1391d382aafbSBarry Smith /* 1392d382aafbSBarry Smith Functions that can act on any PETSc object. 1393d382aafbSBarry Smith */ 13948738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectCreate(MPI_Comm,PetscObject*); 13958738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectCreateGeneric(MPI_Comm, PetscClassId, const char [], PetscObject *); 13968738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectDestroy(PetscObject); 13978738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetComm(PetscObject,MPI_Comm *); 13988738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetClassId(PetscObject,PetscClassId *); 13998738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectSetType(PetscObject,const char []); 14008738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetType(PetscObject,const char *[]); 14018738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectSetName(PetscObject,const char[]); 14028738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetName(PetscObject,const char*[]); 14038738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectSetTabLevel(PetscObject,PetscInt); 14048738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetTabLevel(PetscObject,PetscInt*); 14058738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 14068738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectReference(PetscObject); 14078738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetReference(PetscObject,PetscInt*); 14088738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectDereference(PetscObject); 14098738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 14108738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectView(PetscObject,PetscViewer); 14118738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectCompose(PetscObject,const char[],PetscObject); 14128738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectQuery(PetscObject,const char[],PetscObject *); 14138738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 14148738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectSetFromOptions(PetscObject); 14158738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectSetUp(PetscObject); 14168738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 14178738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 14188738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectProcessOptionsHandlers(PetscObject); 14198738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectDestroyOptionsHandlers(PetscObject); 1420d382aafbSBarry Smith 1421d382aafbSBarry Smith /*MC 1422d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1423d382aafbSBarry Smith 1424eca87e8dSBarry Smith Synopsis: 1425eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1426eca87e8dSBarry Smith 1427ad4df100SBarry Smith Logically Collective on PetscObject 1428d382aafbSBarry Smith 1429d382aafbSBarry Smith Input Parameters: 1430d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1431d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1432d382aafbSBarry Smith . name - name associated with the child function 1433d382aafbSBarry Smith . fname - name of the function 1434d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1435d382aafbSBarry Smith 1436d382aafbSBarry Smith Level: advanced 1437d382aafbSBarry Smith 1438d382aafbSBarry Smith 1439d382aafbSBarry Smith Notes: 1440d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1441d382aafbSBarry Smith 1442d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1443d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1444d382aafbSBarry Smith 1445d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 144620de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1447d382aafbSBarry Smith enabled. 1448d382aafbSBarry Smith 1449d382aafbSBarry Smith Concepts: objects^composing functions 1450d382aafbSBarry Smith Concepts: composing functions 1451d382aafbSBarry Smith Concepts: functions^querying 1452d382aafbSBarry Smith Concepts: objects^querying 1453d382aafbSBarry Smith Concepts: querying objects 1454d382aafbSBarry Smith 1455d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1456d382aafbSBarry Smith M*/ 1457d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1458d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1459d382aafbSBarry Smith #else 1460d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1461d382aafbSBarry Smith #endif 1462d382aafbSBarry Smith 14638738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 14648738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectSetOptionsPrefix(PetscObject,const char[]); 14658738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 14668738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 14678738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1468*9fb22e1aSBarry Smith EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectAMSPublish(PetscObject); 1469c457296dSBarry Smith EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectUnPublish(PetscObject); 14708738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectChangeTypeName(PetscObject,const char[]); 14718738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectRegisterDestroy(PetscObject); 14728738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectRegisterDestroyAll(void); 14738738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscObjectName(PetscObject); 14748738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscTypeCompare(PetscObject,const char[],PetscTruth*); 14758738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRegisterFinalize(PetscErrorCode (*)(void)); 14768738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRegisterFinalizeAll(void); 1477d382aafbSBarry Smith 1478d382aafbSBarry Smith /* 1479d382aafbSBarry Smith Defines PETSc error handling. 1480d382aafbSBarry Smith */ 1481d382aafbSBarry Smith #include "petscerror.h" 1482d382aafbSBarry Smith 1483d382aafbSBarry Smith /*S 1484503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1485d382aafbSBarry Smith 14861d0fab5eSBarry Smith Level: developer 1487d382aafbSBarry Smith 14881d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14891d0fab5eSBarry Smith 14901d0fab5eSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1491d382aafbSBarry Smith S*/ 1492d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1493d382aafbSBarry Smith 14948738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOListDestroy(PetscOList); 14958738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOListFind(PetscOList,const char[],PetscObject*); 14968738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOListReverseFind(PetscOList,PetscObject,char**); 14978738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOListAdd(PetscOList *,const char[],PetscObject); 14988738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOListDuplicate(PetscOList,PetscOList *); 1499d382aafbSBarry Smith 1500d382aafbSBarry Smith /* 1501503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1502d382aafbSBarry Smith link libraries that will be loaded as needed. 1503d382aafbSBarry Smith */ 15048738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 15058738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListDestroy(PetscFList*); 15068738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListFind(PetscFList,MPI_Comm,const char[],void (**)(void)); 15078738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1508d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1509d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1510d382aafbSBarry Smith #else 1511d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1512d382aafbSBarry Smith #endif 15138738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListDuplicate(PetscFList,PetscFList *); 15148738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListView(PetscFList,PetscViewer); 15158738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListConcat(const char [],const char [],char []); 15168738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFListGet(PetscFList,char ***,int*); 1517d382aafbSBarry Smith 1518d382aafbSBarry Smith /*S 1519d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1520d382aafbSBarry Smith 1521d382aafbSBarry Smith Level: advanced 1522d382aafbSBarry Smith 152320de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1524d382aafbSBarry Smith 1525d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1526d382aafbSBarry Smith S*/ 1527d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 15288738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscDLLibrary DLLibrariesLoaded; 15298738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 15308738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 15318738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 15328738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibraryPrintPath(PetscDLLibrary); 15338738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscTruth *); 15348738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 15358738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibraryClose(PetscDLLibrary); 15368738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1537d382aafbSBarry Smith 1538d382aafbSBarry Smith /* 153905846914SDmitry Karpeev PetscFwk support. Needs to be documented. 154005846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 154105846914SDmitry Karpeev */ 154205846914SDmitry Karpeev #include "petscfwk.h" 154305846914SDmitry Karpeev 154405846914SDmitry Karpeev /* 1545d382aafbSBarry Smith Useful utility routines 1546d382aafbSBarry Smith */ 15478738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 15488738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 15498738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1550d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1551d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 15528738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1553d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1554d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 15558738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBarrier(PetscObject); 15568738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscMPIDump(FILE*); 1557d382aafbSBarry Smith 1558503cfb0cSBarry Smith /* 1559503cfb0cSBarry Smith PetscNot - negates a logical type value and returns result as a PetscTruth 1560503cfb0cSBarry Smith 1561503cfb0cSBarry Smith Notes: This is useful in cases like 1562503cfb0cSBarry Smith $ int *a; 1563503cfb0cSBarry Smith $ PetscTruth flag = PetscNot(a) 1564503cfb0cSBarry Smith where !a does not return a PetscTruth because we cannot provide a cast from int to PetscTruth in C. 1565503cfb0cSBarry Smith */ 1566d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1567503cfb0cSBarry Smith 1568d382aafbSBarry Smith /* 1569d382aafbSBarry Smith Defines basic graphics available from PETSc. 1570d382aafbSBarry Smith */ 1571d382aafbSBarry Smith #include "petscdraw.h" 1572d382aafbSBarry Smith 1573d382aafbSBarry Smith /* 1574d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1575d382aafbSBarry Smith */ 1576d382aafbSBarry Smith #include "private/petscimpl.h" 1577503cfb0cSBarry Smith 1578d382aafbSBarry Smith /* 1579d382aafbSBarry Smith Defines PETSc profiling. 1580d382aafbSBarry Smith */ 1581d382aafbSBarry Smith #include "petsclog.h" 1582d382aafbSBarry Smith 1583d382aafbSBarry Smith /* 1584b3506946SBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1585d382aafbSBarry Smith */ 1586b3506946SBarry Smith #if defined(PETSC_HAVE_AMS) 1587b3506946SBarry Smith extern PetscTruth PetscAMSPublishAll; 1588b3506946SBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1589b3506946SBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1590b3506946SBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1591b3506946SBarry Smith #else 1592d382aafbSBarry Smith #define PetscObjectTakeAccess(obj) 0 1593d382aafbSBarry Smith #define PetscObjectGrantAccess(obj) 0 1594d382aafbSBarry Smith #define PetscObjectDepublish(obj) 0 1595b3506946SBarry Smith #endif 1596d382aafbSBarry Smith 1597d382aafbSBarry Smith /* 1598d382aafbSBarry Smith Simple PETSc parallel IO for ASCII printing 1599d382aafbSBarry Smith */ 16008738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFixFilename(const char[],char[]); 16018738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 16028738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFClose(MPI_Comm,FILE*); 16038738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFPrintf(MPI_Comm,FILE*,const char[],...) PETSC_PRINTF_FORMAT_CHECK(3,4); 16048738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPrintf(MPI_Comm,const char[],...) PETSC_PRINTF_FORMAT_CHECK(2,3); 16058738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSNPrintf(char*,size_t,const char [],...); 1606d382aafbSBarry Smith 1607d382aafbSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1608d382aafbSBarry Smith #include <stdarg.h> 1609c9a19010SBarry Smith EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 16108738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT (*PetscVFPrintf)(FILE*,const char[],va_list); 16118738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscVFPrintfDefault(FILE*,const char[],va_list); 1612d382aafbSBarry Smith 1613d382aafbSBarry Smith /*MC 1614d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith Synopsis: 1617d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1618d382aafbSBarry Smith 1619eca87e8dSBarry Smith Not Collective 1620eca87e8dSBarry Smith 1621d382aafbSBarry Smith Input Parameters: 1622d382aafbSBarry Smith . format - the usual printf() format string 1623d382aafbSBarry Smith 1624d382aafbSBarry Smith Options Database Keys: 1625d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1626d382aafbSBarry Smith (default) stderr 1627d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1628d382aafbSBarry Smith error is handled.) 1629d382aafbSBarry Smith 1630d382aafbSBarry Smith Notes: Use 1631d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1632d382aafbSBarry Smith $ error is handled.) and 1633d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1634c9a19010SBarry Smith $ of you can use your own function 1635d382aafbSBarry Smith 1636d382aafbSBarry Smith Use 1637d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1638d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1639d382aafbSBarry Smith 1640d382aafbSBarry Smith Use 1641d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1642d382aafbSBarry Smith 1643d382aafbSBarry Smith Level: developer 1644d382aafbSBarry Smith 1645d382aafbSBarry Smith Fortran Note: 1646d382aafbSBarry Smith This routine is not supported in Fortran. 1647d382aafbSBarry Smith 1648d382aafbSBarry Smith Concepts: error messages^printing 1649d382aafbSBarry Smith Concepts: printing^error messages 1650d382aafbSBarry Smith 1651c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1652d382aafbSBarry Smith M*/ 16538738c821SJed Brown EXTERN PETSCSYS_DLLEXPORT PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1654d382aafbSBarry Smith 1655d382aafbSBarry Smith /*MC 1656d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1657d382aafbSBarry Smith 1658d382aafbSBarry Smith Synopsis: 1659d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1660d382aafbSBarry Smith 1661eca87e8dSBarry Smith Not Collective 1662eca87e8dSBarry Smith 1663d382aafbSBarry Smith Input Parameters: 1664d382aafbSBarry Smith . format - the usual printf() format string 1665d382aafbSBarry Smith 1666d382aafbSBarry Smith Level: developer 1667d382aafbSBarry Smith 1668d382aafbSBarry Smith Fortran Note: 1669d382aafbSBarry Smith This routine is not supported in Fortran. 1670d382aafbSBarry Smith 1671d382aafbSBarry Smith Concepts: help messages^printing 1672d382aafbSBarry Smith Concepts: printing^help messages 1673d382aafbSBarry Smith 1674d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1675d382aafbSBarry Smith M*/ 16768738c821SJed Brown EXTERN PETSCSYS_DLLEXPORT PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1677d382aafbSBarry Smith 1678d382aafbSBarry Smith EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1679d382aafbSBarry Smith EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1680d382aafbSBarry Smith EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1681d382aafbSBarry Smith 1682d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16838738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16848738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPClose(MPI_Comm,FILE*); 1685d382aafbSBarry Smith #endif 1686d382aafbSBarry Smith 16878738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSynchronizedPrintf(MPI_Comm,const char[],...) PETSC_PRINTF_FORMAT_CHECK(2,3); 16888738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...) PETSC_PRINTF_FORMAT_CHECK(3,4); 16898738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSynchronizedFlush(MPI_Comm); 16908738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 16918738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 16928738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 16938738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetPetscDir(const char*[]); 1694d382aafbSBarry Smith 16958738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1696d382aafbSBarry Smith 1697d382aafbSBarry Smith /*S 1698d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1699d382aafbSBarry Smith 1700d382aafbSBarry Smith Level: advanced 1701d382aafbSBarry Smith 1702d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1703d382aafbSBarry Smith S*/ 17048738c821SJed Brown extern PetscClassId PETSCSYS_DLLEXPORT PETSC_CONTAINER_CLASSID; 1705d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 17068738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscContainerGetPointer(PetscContainer,void **); 17078738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscContainerSetPointer(PetscContainer,void *); 17088738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscContainerDestroy(PetscContainer); 17098738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscContainerCreate(MPI_Comm,PetscContainer *); 17108738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1711d382aafbSBarry Smith 1712d382aafbSBarry Smith /* 1713d382aafbSBarry Smith For use in debuggers 1714d382aafbSBarry Smith */ 17158738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscMPIInt PetscGlobalRank; 17168738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscMPIInt PetscGlobalSize; 17178738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscIntView(PetscInt,const PetscInt[],PetscViewer); 17188738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRealView(PetscInt,const PetscReal[],PetscViewer); 17198738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1720d382aafbSBarry Smith 1721d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1722d382aafbSBarry Smith #include <memory.h> 1723d382aafbSBarry Smith #endif 1724d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1725d382aafbSBarry Smith #include <stdlib.h> 1726d382aafbSBarry Smith #endif 1727d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1728d382aafbSBarry Smith #include <strings.h> 1729d382aafbSBarry Smith #endif 1730d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1731d382aafbSBarry Smith #include <string.h> 1732d382aafbSBarry Smith #endif 17336c7e564aSBarry Smith 17346c7e564aSBarry Smith 1735d382aafbSBarry Smith #if defined(PETSC_HAVE_XMMINTRIN_H) 1736d382aafbSBarry Smith #include <xmmintrin.h> 1737d382aafbSBarry Smith #endif 1738d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1739d382aafbSBarry Smith #include <stdint.h> 1740d382aafbSBarry Smith #endif 1741d382aafbSBarry Smith 1742d382aafbSBarry Smith /*@C 1743d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1744d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1745d382aafbSBarry Smith PetscMemmove() in that case. 1746d382aafbSBarry Smith 1747d382aafbSBarry Smith Not Collective 1748d382aafbSBarry Smith 1749d382aafbSBarry Smith Input Parameters: 1750d382aafbSBarry Smith + b - pointer to initial memory space 1751d382aafbSBarry Smith - n - length (in bytes) of space to copy 1752d382aafbSBarry Smith 1753d382aafbSBarry Smith Output Parameter: 1754d382aafbSBarry Smith . a - pointer to copy space 1755d382aafbSBarry Smith 1756d382aafbSBarry Smith Level: intermediate 1757d382aafbSBarry Smith 1758d382aafbSBarry Smith Compile Option: 1759d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1760d382aafbSBarry Smith for memory copies on double precision values. 1761d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1762d382aafbSBarry Smith for memory copies on double precision values. 1763d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1764d382aafbSBarry Smith for memory copies on double precision values. 1765d382aafbSBarry Smith 1766d382aafbSBarry Smith Note: 1767d382aafbSBarry Smith This routine is analogous to memcpy(). 1768d382aafbSBarry Smith 1769503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1770503cfb0cSBarry Smith 1771d382aafbSBarry Smith Concepts: memory^copying 1772d382aafbSBarry Smith Concepts: copying^memory 1773d382aafbSBarry Smith 1774d382aafbSBarry Smith .seealso: PetscMemmove() 1775d382aafbSBarry Smith 1776d382aafbSBarry Smith @*/ 17778738c821SJed Brown PETSC_STATIC_INLINE PetscErrorCode PETSCSYS_DLLEXPORT PetscMemcpy(void *a,const void *b,size_t n) 1778d382aafbSBarry Smith { 1779d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1780d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1781d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1782e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1783e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1784d382aafbSBarry Smith #endif 1785d382aafbSBarry Smith PetscFunctionBegin; 1786d382aafbSBarry Smith if (a != b) { 1787d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1788d382aafbSBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) { 1789e32f2f54SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1790d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1791d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1792d382aafbSBarry Smith } 1793d382aafbSBarry Smith #endif 1794d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1795d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1796d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1797d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1798d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1799d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1800d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1801d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1802d382aafbSBarry Smith #else 1803d382aafbSBarry Smith size_t i; 1804d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1805d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1806d382aafbSBarry Smith #endif 1807d382aafbSBarry Smith } else { 1808d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1809d382aafbSBarry Smith } 1810d382aafbSBarry Smith #elif defined(PETSC_HAVE__INTEL_FAST_MEMCPY) 1811d382aafbSBarry Smith _intel_fast_memcpy((char*)(a),(char*)(b),n); 1812d382aafbSBarry Smith #else 1813d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1814d382aafbSBarry Smith #endif 1815d382aafbSBarry Smith } 1816d382aafbSBarry Smith PetscFunctionReturn(0); 1817d382aafbSBarry Smith } 1818d382aafbSBarry Smith 1819d382aafbSBarry Smith /*@C 1820d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1821d382aafbSBarry Smith 1822d382aafbSBarry Smith Not Collective 1823d382aafbSBarry Smith 1824d382aafbSBarry Smith Input Parameters: 1825d382aafbSBarry Smith + a - pointer to beginning memory location 1826d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1827d382aafbSBarry Smith 1828d382aafbSBarry Smith Level: intermediate 1829d382aafbSBarry Smith 1830d382aafbSBarry Smith Compile Option: 1831d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1832d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1833d382aafbSBarry Smith 1834503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1835503cfb0cSBarry Smith 1836d382aafbSBarry Smith Concepts: memory^zeroing 1837d382aafbSBarry Smith Concepts: zeroing^memory 1838d382aafbSBarry Smith 1839d382aafbSBarry Smith .seealso: PetscMemcpy() 1840d382aafbSBarry Smith @*/ 18418738c821SJed Brown PETSC_STATIC_INLINE PetscErrorCode PETSCSYS_DLLEXPORT PetscMemzero(void *a,size_t n) 1842d382aafbSBarry Smith { 1843d382aafbSBarry Smith if (n > 0) { 1844d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1845e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1846d382aafbSBarry Smith #endif 1847d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1848d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1849d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1850d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1851d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1852d382aafbSBarry Smith } else { 1853d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1854d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1855d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1856d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1857d382aafbSBarry Smith } else { 1858d382aafbSBarry Smith #endif 1859d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1860d382aafbSBarry Smith bzero((char *)a,n); 1861d382aafbSBarry Smith #elif defined (PETSC_HAVE__INTEL_FAST_MEMSET) 1862d382aafbSBarry Smith _intel_fast_memset((char*)a,0,n); 1863d382aafbSBarry Smith #else 1864d382aafbSBarry Smith memset((char*)a,0,n); 1865d382aafbSBarry Smith #endif 1866d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1867d382aafbSBarry Smith } 1868d382aafbSBarry Smith #endif 1869d382aafbSBarry Smith } 1870d382aafbSBarry Smith return 0; 1871d382aafbSBarry Smith } 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith /*MC 1874d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1875d382aafbSBarry Smith 1876eca87e8dSBarry Smith Synopsis: 1877eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1878eca87e8dSBarry Smith 1879d382aafbSBarry Smith Not Collective 1880d382aafbSBarry Smith 1881d382aafbSBarry Smith Input Parameters: 1882d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1883d382aafbSBarry Smith . n - number of elements to fetch 1884d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 188550d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1886d382aafbSBarry Smith 1887d382aafbSBarry Smith Level: developer 1888d382aafbSBarry Smith 1889d382aafbSBarry Smith Notes: 1890d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1891d382aafbSBarry Smith 189250d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 189350d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 189450d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 189563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 189663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 189763cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1900d382aafbSBarry Smith address). 1901d382aafbSBarry Smith 1902d382aafbSBarry Smith Concepts: memory 1903d382aafbSBarry Smith M*/ 1904d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1905d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1906d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1907d382aafbSBarry Smith } while (0) 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith /* 1910d382aafbSBarry Smith Allows accessing Matlab Engine 1911d382aafbSBarry Smith */ 1912d382aafbSBarry Smith #include "petscmatlab.h" 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith /* 1915d382aafbSBarry Smith Determine if some of the kernel computation routines use 1916d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1917d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1918d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1919e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1920d382aafbSBarry Smith */ 1921d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1924d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1925d382aafbSBarry Smith #endif 1926d382aafbSBarry Smith 19275a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 19285a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1929d382aafbSBarry Smith #endif 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1932d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1933d382aafbSBarry Smith #endif 1934d382aafbSBarry Smith 1935d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1936d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1937d382aafbSBarry Smith #endif 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1940d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1944d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1948d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith 1951d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1952d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1953d382aafbSBarry Smith #endif 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1956d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1957d382aafbSBarry Smith #endif 1958d382aafbSBarry Smith 1959d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1960d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1964d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1965d382aafbSBarry Smith #endif 1966d382aafbSBarry Smith 1967d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1968d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1969d382aafbSBarry Smith #endif 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1972d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1973d382aafbSBarry Smith #endif 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1976d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1977d382aafbSBarry Smith #endif 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith #endif 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith /* 1982d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1983d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1984d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1985d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1986d382aafbSBarry Smith ugly extern "C" {} wrappers. 1987d382aafbSBarry Smith */ 1988d382aafbSBarry Smith #if defined(__cplusplus) 1989d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1990d382aafbSBarry Smith #define EXTERN_C_END } 1991d382aafbSBarry Smith #else 1992d382aafbSBarry Smith #define EXTERN_C_BEGIN 1993d382aafbSBarry Smith #define EXTERN_C_END 1994d382aafbSBarry Smith #endif 1995d382aafbSBarry Smith 1996d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1997d382aafbSBarry Smith 1998d382aafbSBarry Smith /*MC 1999d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2000d382aafbSBarry Smith communication 2001d382aafbSBarry Smith 2002d382aafbSBarry Smith Level: beginner 2003d382aafbSBarry Smith 2004d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2005d382aafbSBarry Smith 2006d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2007d382aafbSBarry Smith M*/ 2008d382aafbSBarry Smith 2009d382aafbSBarry Smith /*MC 2010d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2011d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2012d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2013d382aafbSBarry Smith 2014d382aafbSBarry Smith 2015d382aafbSBarry Smith Level: beginner 2016d382aafbSBarry Smith 2017d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2018d382aafbSBarry Smith M*/ 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith /*MC 2021d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2022d382aafbSBarry Smith 2023d382aafbSBarry Smith Level: beginner 2024d382aafbSBarry Smith 2025d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2026d382aafbSBarry Smith M*/ 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith /*MC 2029d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2030d382aafbSBarry Smith Level: beginner 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2033d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2034d382aafbSBarry Smith 2035d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2036d382aafbSBarry Smith M*/ 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith /*MC 2039d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2040d382aafbSBarry Smith 2041d382aafbSBarry Smith Level: beginner 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2044d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2047d382aafbSBarry Smith M*/ 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith /*MC 2050d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith Level: beginner 2053d382aafbSBarry Smith 2054d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2055d382aafbSBarry Smith pass this value 2056d382aafbSBarry Smith 2057d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2058d382aafbSBarry Smith M*/ 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2061d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2062d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2063d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2064d382aafbSBarry Smith #else 2065d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2066d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2067d382aafbSBarry Smith #endif 2068d382aafbSBarry Smith #endif 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2073d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2074d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2075d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2076d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2077d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2078d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2079d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2080d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2083e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2084e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2085d382aafbSBarry Smith #define PetscMPIIntCast(a) (a);PetscMPIIntCheck(a) 2086d382aafbSBarry Smith #define PetscBLASIntCast(a) (a);PetscBLASIntCheck(a) 2087d382aafbSBarry Smith 2088d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2089e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2090d382aafbSBarry Smith #define PetscHDF5IntCast(a) (a);PetscHDF5IntCheck(a) 2091d382aafbSBarry Smith #else 2092d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2093d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2094d382aafbSBarry Smith #endif 2095d382aafbSBarry Smith 2096d382aafbSBarry Smith #else 2097d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2098d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2099d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2100d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2101d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2102d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith /* 2107d382aafbSBarry Smith The IBM include files define hz, here we hide it so that it may be used 2108d382aafbSBarry Smith as a regular user variable. 2109d382aafbSBarry Smith */ 2110d382aafbSBarry Smith #if defined(hz) 2111d382aafbSBarry Smith #undef hz 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2115d382aafbSBarry Smith 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2118d382aafbSBarry Smith #include <limits.h> 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2121d382aafbSBarry Smith #include <sys/param.h> 2122d382aafbSBarry Smith #endif 2123d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2124d382aafbSBarry Smith #include <sys/types.h> 2125d382aafbSBarry Smith #endif 2126d382aafbSBarry Smith #if defined(MAXPATHLEN) 2127d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2128d382aafbSBarry Smith #elif defined(MAX_PATH) 2129d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2130d382aafbSBarry Smith #elif defined(_MAX_PATH) 2131d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2132d382aafbSBarry Smith #else 2133d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2134d382aafbSBarry Smith #endif 2135d382aafbSBarry Smith 2136d382aafbSBarry Smith /* Special support for C++ */ 2137d382aafbSBarry Smith #include "petscsys.hh" 21386c7e564aSBarry Smith 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith /*MC 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith $ 1) classic Fortran 77 style 2145d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2146d382aafbSBarry Smith $ XXX variablename 2147d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2148d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2149d382aafbSBarry Smith $ 2150d382aafbSBarry Smith $ 2) classic Fortran 90 style 2151d1716517SSatish Balay $#include "finclude/petscXXX.h" 2152d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2153d382aafbSBarry Smith $ XXX variablename 2154d382aafbSBarry Smith $ 2155d382aafbSBarry Smith $ 3) Using Fortran modules 2156d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2157d382aafbSBarry Smith $ use petscXXXX 2158d382aafbSBarry Smith $ XXX variablename 2159d382aafbSBarry Smith $ 2160d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2161d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2162d382aafbSBarry Smith $ use petscXXXX 2163d382aafbSBarry Smith $ type(XXX) variablename 2164e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2165d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2166d382aafbSBarry Smith 2167d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2168d382aafbSBarry Smith 2169d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2170d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2171d382aafbSBarry Smith $ integer variablename 2172d382aafbSBarry Smith $ 2173d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2174d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2175d382aafbSBarry Smith 2176d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2177d382aafbSBarry Smith for only a few PETSc functions. 2178d382aafbSBarry Smith 2179d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2180d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2181d382aafbSBarry Smith you cannot have something like 2182d382aafbSBarry Smith $ PetscInt row,col 2183d382aafbSBarry Smith $ PetscScalar val 2184d382aafbSBarry Smith $ ... 2185d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2186d382aafbSBarry Smith You must instead have 2187d382aafbSBarry Smith $ PetscInt row(1),col(1) 2188d382aafbSBarry Smith $ PetscScalar val(1) 2189d382aafbSBarry Smith $ ... 2190d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith 2193d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2196d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2197d382aafbSBarry Smith 2198d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2199d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2200d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2201d382aafbSBarry Smith 2202d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2203e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2204d382aafbSBarry Smith 2205d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2206d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2207d382aafbSBarry Smith 2208d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2209d382aafbSBarry Smith automatically by "make allfortranstubs". 2210d382aafbSBarry Smith 2211e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2212d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2213d382aafbSBarry Smith include their predecessors 2214d382aafbSBarry Smith 2215d382aafbSBarry Smith Level: beginner 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith M*/ 2218d382aafbSBarry Smith 22198738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetArchType(char[],size_t); 22208738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetHostName(char[],size_t); 22218738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetUserName(char[],size_t); 22228738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetProgramName(char[],size_t); 22238738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSetProgramName(const char[]); 22248738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetDate(char[],size_t); 2225d382aafbSBarry Smith 22268738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortInt(PetscInt,PetscInt[]); 22278738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 22288738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 22298738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 22308738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 22318738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 22328738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 22338738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortReal(PetscInt,PetscReal[]); 22348738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 22358738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 22368738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2237d382aafbSBarry Smith 22388738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSetDisplay(void); 22398738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetDisplay(char[],size_t); 2240d382aafbSBarry Smith 2241d382aafbSBarry Smith /*E 2242d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2243d382aafbSBarry Smith with an optional dynamic library name, for example 2244d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2245d382aafbSBarry Smith 2246d382aafbSBarry Smith Level: beginner 2247d382aafbSBarry Smith 2248e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2249d382aafbSBarry Smith with the option --download-sprng 2250d382aafbSBarry Smith 2251d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 2252d382aafbSBarry Smith E*/ 2253d382aafbSBarry Smith #define PetscRandomType char* 2254d382aafbSBarry Smith #define PETSCRAND "rand" 2255d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2256d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2257d382aafbSBarry Smith 2258d382aafbSBarry Smith /* Logging support */ 22598738c821SJed Brown extern PETSCSYS_DLLEXPORT PetscClassId PETSC_RANDOM_CLASSID; 2260d382aafbSBarry Smith 22618738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomInitializePackage(const char[]); 2262d382aafbSBarry Smith 2263d382aafbSBarry Smith /*S 2264d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2265d382aafbSBarry Smith 2266d382aafbSBarry Smith Level: intermediate 2267d382aafbSBarry Smith 2268d382aafbSBarry Smith Concepts: random numbers 2269d382aafbSBarry Smith 2270d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2271d382aafbSBarry Smith S*/ 2272d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2273d382aafbSBarry Smith 2274d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2275d382aafbSBarry Smith extern PetscFList PetscRandomList; 2276d382aafbSBarry Smith extern PetscTruth PetscRandomRegisterAllCalled; 2277d382aafbSBarry Smith 22788738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomRegisterAll(const char []); 22798738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22808738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomRegisterDestroy(void); 22818738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomSetType(PetscRandom, const PetscRandomType); 22828738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomSetFromOptions(PetscRandom); 22838738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomGetType(PetscRandom, const PetscRandomType*); 22848738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomViewFromOptions(PetscRandom,char*); 22858738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomView(PetscRandom,PetscViewer); 2286d382aafbSBarry Smith 2287d382aafbSBarry Smith /*MC 2288d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2289d382aafbSBarry Smith 2290d382aafbSBarry Smith Synopsis: 22911890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2292d382aafbSBarry Smith 2293d382aafbSBarry Smith Not Collective 2294d382aafbSBarry Smith 2295d382aafbSBarry Smith Input Parameters: 2296d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2297d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2298d382aafbSBarry Smith . func_name - The name of routine to create method context 2299d382aafbSBarry Smith - create_func - The creation routine itself 2300d382aafbSBarry Smith 2301d382aafbSBarry Smith Notes: 2302d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2303d382aafbSBarry Smith 2304d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2305d382aafbSBarry Smith 2306d382aafbSBarry Smith Sample usage: 2307d382aafbSBarry Smith .vb 2308d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2309d382aafbSBarry Smith .ve 2310d382aafbSBarry Smith 2311d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2312d382aafbSBarry Smith .vb 2313d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2314d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2315d382aafbSBarry Smith .ve 2316d382aafbSBarry Smith or at runtime via the option 2317d382aafbSBarry Smith .vb 2318d382aafbSBarry Smith -random_type my_random_name 2319d382aafbSBarry Smith .ve 2320d382aafbSBarry Smith 2321d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2322d382aafbSBarry Smith 2323d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2324d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2325d382aafbSBarry Smith 2326d382aafbSBarry Smith Level: advanced 2327d382aafbSBarry Smith 2328d382aafbSBarry Smith .keywords: PetscRandom, register 2329d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2330d382aafbSBarry Smith M*/ 2331d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2332d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2333d382aafbSBarry Smith #else 2334d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2335d382aafbSBarry Smith #endif 2336d382aafbSBarry Smith 23378738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomCreate(MPI_Comm,PetscRandom*); 23388738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomGetValue(PetscRandom,PetscScalar*); 23398738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomGetValueReal(PetscRandom,PetscReal*); 23408738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 23418738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 23428738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomSetSeed(PetscRandom,unsigned long); 23438738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomGetSeed(PetscRandom,unsigned long *); 23448738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomSeed(PetscRandom); 23458738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscRandomDestroy(PetscRandom); 2346d382aafbSBarry Smith 23478738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetFullPath(const char[],char[],size_t); 23488738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetRelativePath(const char[],char[],size_t); 23498738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetWorkingDirectory(char[],size_t); 23508738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetRealPath(const char[],char[]); 23518738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetHomeDirectory(char[],size_t); 23528738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscTestFile(const char[],char,PetscTruth*); 23538738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscTestDirectory(const char[],char,PetscTruth*); 2354d382aafbSBarry Smith 23558738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinaryRead(int,void*,PetscInt,PetscDataType); 23568738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 23578738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscTruth); 23588738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscTruth); 23598738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinaryOpen(const char[],PetscFileMode,int *); 23608738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinaryClose(int); 23618738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSharedTmp(MPI_Comm,PetscTruth *); 23628738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSharedWorkingDirectory(MPI_Comm,PetscTruth *); 23638738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGetTmp(MPI_Comm,char[],size_t); 23648738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscTruth*); 23658738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscLs(MPI_Comm,const char[],char[],size_t,PetscTruth*); 23668738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscOpenSocket(char*,int,int*); 2367a240c4b3SBarry Smith EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscWebServe(MPI_Comm,int); 2368d382aafbSBarry Smith 2369d382aafbSBarry Smith /* 2370d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2371d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2372d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2373d382aafbSBarry Smith PetscBinarySeek(). 2374d382aafbSBarry Smith */ 2375d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2376d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2377d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2378d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2379d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2380d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2381d382aafbSBarry Smith 2382d382aafbSBarry Smith /*E 2383d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2384d382aafbSBarry Smith 2385d382aafbSBarry Smith Level: advanced 2386d382aafbSBarry Smith 2387d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2388d382aafbSBarry Smith E*/ 2389d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 23908738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 23918738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2392d382aafbSBarry Smith 23938738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSetDebugTerminal(const char[]); 23948738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSetDebugger(const char[],PetscTruth); 23958738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSetDefaultDebugger(void); 23968738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSetDebuggerFromString(char*); 23978738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscAttachDebugger(void); 23988738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscStopForDebugger(void); 2399d382aafbSBarry Smith 24008738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 24018738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 24028738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 24038738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 24048738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2405d382aafbSBarry Smith 24068738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSSEIsEnabled(MPI_Comm,PetscTruth *,PetscTruth *); 2407d382aafbSBarry Smith 2408d382aafbSBarry Smith /*E 2409d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2410d382aafbSBarry Smith 2411d382aafbSBarry Smith Level: beginner 2412d382aafbSBarry Smith 2413d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2414d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2415d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2416d382aafbSBarry Smith E*/ 2417d382aafbSBarry Smith typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES} InsertMode; 2418d382aafbSBarry Smith 2419d382aafbSBarry Smith /*MC 2420d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2421d382aafbSBarry Smith 2422d382aafbSBarry Smith Level: beginner 2423d382aafbSBarry Smith 2424d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2425eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2426eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2427d382aafbSBarry Smith 2428d382aafbSBarry Smith M*/ 2429d382aafbSBarry Smith 2430d382aafbSBarry Smith /*MC 2431d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2432d382aafbSBarry Smith value into that location 2433d382aafbSBarry Smith 2434d382aafbSBarry Smith Level: beginner 2435d382aafbSBarry Smith 2436d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2437eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2438eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2439d382aafbSBarry Smith 2440d382aafbSBarry Smith M*/ 2441d382aafbSBarry Smith 2442d382aafbSBarry Smith /*MC 2443d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2444d382aafbSBarry Smith 2445d382aafbSBarry Smith Level: beginner 2446d382aafbSBarry Smith 2447d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2448d382aafbSBarry Smith 2449d382aafbSBarry Smith M*/ 2450d382aafbSBarry Smith 2451d382aafbSBarry Smith /*S 2452d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2453d382aafbSBarry Smith 2454d382aafbSBarry Smith Level: advanced 2455d382aafbSBarry Smith 2456d382aafbSBarry Smith Concepts: communicator, create 2457d382aafbSBarry Smith S*/ 2458d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2459d382aafbSBarry Smith 2460d382aafbSBarry Smith struct _n_PetscSubcomm { 2461d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2462d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2463d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2464d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2465d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2466d382aafbSBarry Smith }; 2467d382aafbSBarry Smith 2468638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2469638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2470638faf0bSHong Zhang 24718738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSubcommCreate(MPI_Comm,PetscInt,PetscSubcommType,PetscSubcomm*); 24728738c821SJed Brown EXTERN PetscErrorCode PETSCSYS_DLLEXPORT PetscSubcommDestroy(PetscSubcomm); 2473d382aafbSBarry Smith 2474d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24756c7e564aSBarry Smith 2476d382aafbSBarry Smith #endif 2477