1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 1272c8e378dSBarry Smith #include <mpi.h> 12865013866SBarry Smith 129d382aafbSBarry Smith /* 130a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 131a7886beaSBarry Smith This usually happens because 132a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 133a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 134a7886beaSBarry Smith */ 135a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 136a7886beaSBarry Smith # if !defined(__MPIUNI_H) 137a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 138a7886beaSBarry Smith # endif 13941f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14041f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14141f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 14241f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 14341f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 14441f4af4cSSatish Balay # endif 14541f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 14641f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 14741f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 14841f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 14941f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15041f4af4cSSatish Balay # endif 151a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 15241f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 153a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 154ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 155a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 156a7886beaSBarry Smith # endif 157a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 158a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 159a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 160ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 161c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 162a7886beaSBarry Smith # endif 16341f4af4cSSatish Balay #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 16441f4af4cSSatish Balay # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 165a7886beaSBarry Smith #endif 166a7886beaSBarry Smith 167a7886beaSBarry Smith /* 1682981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 169d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 170d382aafbSBarry Smith */ 171d382aafbSBarry Smith #include <stdio.h> 172d382aafbSBarry Smith 173d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 174d382aafbSBarry Smith #if !defined(MPIAPI) 175d382aafbSBarry Smith #define MPIAPI 176d382aafbSBarry Smith #endif 177d382aafbSBarry Smith 1781cc8b206SBarry Smith /* 1791cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1801cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1811cc8b206SBarry Smith does not match the actual type of the argument being passed in 1821cc8b206SBarry Smith */ 183c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 184894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 185894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1868ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1878ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 188894dd566SJed Brown # endif 189894dd566SJed Brown #endif 190894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 191894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1928ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1938ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 194894dd566SJed Brown #endif 195b3506946SBarry Smith 196d382aafbSBarry Smith /*MC 1971957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 198d382aafbSBarry Smith 199d382aafbSBarry Smith Level: beginner 200d382aafbSBarry Smith 201d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 202d382aafbSBarry Smith M*/ 203d382aafbSBarry Smith typedef int PetscErrorCode; 204d382aafbSBarry Smith 205d382aafbSBarry Smith /*MC 206d382aafbSBarry Smith 207503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 208d382aafbSBarry Smith 209e28ce29aSPatrick Sanan Notes: 210e28ce29aSPatrick Sanan Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 2111957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2121957e957SBarry Smith 213e28ce29aSPatrick Sanan Developer Notes: 214e28ce29aSPatrick Sanan Internal integer stored in the _p_PetscObject data structure. 2151957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2161957e957SBarry Smith 2171957e957SBarry Smith Level: developer 218d382aafbSBarry Smith 2190700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 220d382aafbSBarry Smith M*/ 2210700a824SBarry Smith typedef int PetscClassId; 222d382aafbSBarry Smith 223d382aafbSBarry Smith 224d382aafbSBarry Smith /*MC 225d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 226d382aafbSBarry Smith 227d382aafbSBarry Smith Level: intermediate 228d382aafbSBarry Smith 229e28ce29aSPatrick Sanan Notes: 230e28ce29aSPatrick Sanan usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 231e28ce29aSPatrick Sanan standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt; it remains 32 bit. 232d382aafbSBarry Smith 2334dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2342981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 235d382aafbSBarry Smith 2361cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 237d382aafbSBarry Smith 238d382aafbSBarry Smith M*/ 239d382aafbSBarry Smith typedef int PetscMPIInt; 240d382aafbSBarry Smith 241d382aafbSBarry Smith /*MC 242d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 243d382aafbSBarry Smith 244d382aafbSBarry Smith Level: intermediate 245d382aafbSBarry Smith 246d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 247d382aafbSBarry Smith M*/ 248d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2495a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 250d382aafbSBarry Smith 251fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 252fab38c73SJed Brown #include <stdint.h> 253fab38c73SJed Brown #endif 254a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 25513e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 256a05e1a72SSatish Balay #include <inttypes.h> 25737354ed4SSatish Balay # if !defined(PRId64) 25837354ed4SSatish Balay # define PRId64 "ld" 25937354ed4SSatish Balay # endif 260a05e1a72SSatish Balay #endif 261fab38c73SJed Brown 26299a4b90dSDave May typedef short PetscShort; 26399a4b90dSDave May typedef char PetscChar; 26499a4b90dSDave May typedef float PetscFloat; 26599a4b90dSDave May 266d382aafbSBarry Smith /*MC 267bb42e86aSJed Brown PetscInt - PETSc type that represents an integer, used primarily to 268e28ce29aSPatrick Sanan represent size of arrays and indexing into arrays. Its size can be configured with the option --with-64-bit-indices to be either 32-bit (default) or 64-bit. 269d382aafbSBarry Smith 270e28ce29aSPatrick Sanan Notes: 271e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of the size of PetscInt. 272390e1bf2SBarry Smith 273e28ce29aSPatrick Sanan Level: beginner 274390e1bf2SBarry Smith 275e28ce29aSPatrick Sanan .seealso: PetscBLASInt, PetscMPIInt, PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 276d382aafbSBarry Smith M*/ 277e28ce29aSPatrick Sanan 278e28ce29aSPatrick Sanan /*MC 279e28ce29aSPatrick Sanan MPIU_INT - MPI datatype corresponding to PetscInt 280e28ce29aSPatrick Sanan 281e28ce29aSPatrick Sanan Notes: 282e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscInt or array of PetscInt values, pass this value. 283e28ce29aSPatrick Sanan 284e28ce29aSPatrick Sanan Level: beginner 285e28ce29aSPatrick Sanan 286e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX 287e28ce29aSPatrick Sanan M*/ 288e28ce29aSPatrick Sanan 28937354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 290bafee8b4SSatish Balay typedef int64_t PetscInt64; 291bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 292a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 293fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 294bafee8b4SSatish Balay typedef long long PetscInt64; 295bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 296a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 297f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 298bafee8b4SSatish Balay typedef __int64 PetscInt64; 299bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 300a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 301236ed0a3SSatish Balay #else 302bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 303236ed0a3SSatish Balay #endif 304b7b8f77aSBarry Smith 305b7b8f77aSBarry Smith #if PETSC_SIZEOF_VOID_P == 4 306b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPI_INT 307b7b8f77aSBarry Smith #else 308b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPIU_INT64 309b7b8f77aSBarry Smith #endif 310b7b8f77aSBarry Smith 311d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 312bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 313bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 314a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 315d382aafbSBarry Smith #else 316d382aafbSBarry Smith typedef int PetscInt; 317d382aafbSBarry Smith #define MPIU_INT MPI_INT 318a05e1a72SSatish Balay #define PetscInt_FMT "d" 319d382aafbSBarry Smith #endif 320d382aafbSBarry Smith 321702bc34aSSatish Balay /*MC 322702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 323702bc34aSSatish Balay 324e28ce29aSPatrick Sanan Notes: 325e28ce29aSPatrick Sanan Usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 326702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 327702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 328702bc34aSSatish Balay 329c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3302981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 331702bc34aSSatish Balay 332e28ce29aSPatrick Sanan Installation Notes: 333e28ce29aSPatrick Sanan The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 334702bc34aSSatish Balay if you run ./configure with the option 335149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3362981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3372981ebdbSBarry Smith 338390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 339390e1bf2SBarry Smith --known-64-bit-blas-indices 340390e1bf2SBarry Smith 341390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 342390e1bf2SBarry Smith will build a 64 bit integer version 3432981ebdbSBarry Smith 344e28ce29aSPatrick Sanan Developer Notes: 345e28ce29aSPatrick Sanan Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 346702bc34aSSatish Balay 347702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 348702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 349702bc34aSSatish Balay 350e28ce29aSPatrick Sanan Level: intermediate 351e28ce29aSPatrick Sanan 3521cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 353702bc34aSSatish Balay 354702bc34aSSatish Balay M*/ 355702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 356bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 357702bc34aSSatish Balay #else 358702bc34aSSatish Balay typedef int PetscBLASInt; 359702bc34aSSatish Balay #endif 360702bc34aSSatish Balay 361503cfb0cSBarry Smith /* 362503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 363503cfb0cSBarry Smith */ 364d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 365adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 366d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 367adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 368d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 369adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 370d382aafbSBarry Smith #else 371d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 372d382aafbSBarry Smith #endif 373d382aafbSBarry Smith 374d382aafbSBarry Smith /* 375d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 376d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 377d382aafbSBarry Smith */ 378014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 379d382aafbSBarry Smith 380d382aafbSBarry Smith /* 381d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 382d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 383d382aafbSBarry Smith */ 384014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 385d382aafbSBarry Smith 386d382aafbSBarry Smith /*MC 387d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 388d382aafbSBarry Smith 389d382aafbSBarry Smith Synopsis: 390aaa7dc30SBarry Smith #include <petscsys.h> 391ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 392d382aafbSBarry Smith 393eca87e8dSBarry Smith Not Collective 394eca87e8dSBarry Smith 395d382aafbSBarry Smith Input Parameters: 396d382aafbSBarry Smith . cond - condition or expression 397d382aafbSBarry Smith 398e28ce29aSPatrick Sanan Notes: 399e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 400d382aafbSBarry Smith branch is unlikely. 401d382aafbSBarry Smith 402d382aafbSBarry Smith Level: advanced 403d382aafbSBarry Smith 404d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 405d382aafbSBarry Smith M*/ 406d382aafbSBarry Smith 407d382aafbSBarry Smith /*MC 408d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 409d382aafbSBarry Smith 410d382aafbSBarry Smith Synopsis: 411aaa7dc30SBarry Smith #include <petscsys.h> 41223072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 413d382aafbSBarry Smith 414eca87e8dSBarry Smith Not Collective 415eca87e8dSBarry Smith 416d382aafbSBarry Smith Input Parameters: 417d382aafbSBarry Smith . cond - condition or expression 418d382aafbSBarry Smith 419e28ce29aSPatrick Sanan Notes: 420e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 421d382aafbSBarry Smith branch is likely. 422d382aafbSBarry Smith 423d382aafbSBarry Smith Level: advanced 424d382aafbSBarry Smith 425d382aafbSBarry Smith .seealso: PetscUnlikely() 426d382aafbSBarry Smith M*/ 427d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 428d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 429d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 430d382aafbSBarry Smith #else 431cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 432cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 433d382aafbSBarry Smith #endif 434d382aafbSBarry Smith 435d382aafbSBarry Smith /* 436d382aafbSBarry Smith Declare extern C stuff after including external header files 437d382aafbSBarry Smith */ 438d382aafbSBarry Smith 439d382aafbSBarry Smith 440d382aafbSBarry Smith /* 441d382aafbSBarry Smith Basic PETSc constants 442d382aafbSBarry Smith */ 443d382aafbSBarry Smith 444d382aafbSBarry Smith /*E 445ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 446d382aafbSBarry Smith 447d382aafbSBarry Smith Level: beginner 448d382aafbSBarry Smith 449e28ce29aSPatrick Sanan Developer Note: 450e28ce29aSPatrick Sanan Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 45134e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 45234e82e7dSBarry Smith 4531cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 454d382aafbSBarry Smith E*/ 455ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4566a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4575a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 45870b3c8c7SBarry Smith 4598b49ba18SBarry Smith /* 460390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4618b49ba18SBarry Smith */ 4628b49ba18SBarry Smith #include <petscmath.h> 4638b49ba18SBarry Smith 46470b3c8c7SBarry Smith /*E 46570b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 46670b3c8c7SBarry Smith 46770b3c8c7SBarry Smith Level: beginner 46870b3c8c7SBarry Smith 46970b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 47070b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 47170b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 47270b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 47370b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 47470b3c8c7SBarry Smith 47570b3c8c7SBarry Smith E*/ 47670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4776a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 478d382aafbSBarry Smith 479d382aafbSBarry Smith /*MC 480ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 481d382aafbSBarry Smith 482d382aafbSBarry Smith Level: beginner 483d382aafbSBarry Smith 484e28ce29aSPatrick Sanan Note: 485e28ce29aSPatrick Sanan Zero integer 486d382aafbSBarry Smith 487ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 488d382aafbSBarry Smith M*/ 489d382aafbSBarry Smith 490d382aafbSBarry Smith /*MC 491ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 492d382aafbSBarry Smith 493d382aafbSBarry Smith Level: beginner 494d382aafbSBarry Smith 495e28ce29aSPatrick Sanan Note: 496e28ce29aSPatrick Sanan Nonzero integer 497d382aafbSBarry Smith 498ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 499d382aafbSBarry Smith M*/ 500d382aafbSBarry Smith 501d382aafbSBarry Smith /*MC 5020298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 503d382aafbSBarry Smith 504d382aafbSBarry Smith Level: beginner 505d382aafbSBarry Smith 506e28ce29aSPatrick Sanan Note: 507e28ce29aSPatrick Sanan Accepted by many PETSc functions to not set a parameter and instead use 508d382aafbSBarry Smith some default 509d382aafbSBarry Smith 510e28ce29aSPatrick Sanan Fortran Notes: 511e28ce29aSPatrick Sanan This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 512d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 513d382aafbSBarry Smith 514e28ce29aSPatrick Sanan .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_DETERMINE 515d382aafbSBarry Smith 516d382aafbSBarry Smith M*/ 5170298fd71SBarry Smith #define PETSC_IGNORE NULL 518d382aafbSBarry Smith 519c528d872SBarry Smith /* This is deprecated */ 520c528d872SBarry Smith #define PETSC_NULL NULL 521c528d872SBarry Smith 522d382aafbSBarry Smith /*MC 523557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 524557d4da8SBarry Smith where you wish PETSc to use the default. 525557d4da8SBarry Smith 526557d4da8SBarry Smith Level: beginner 527557d4da8SBarry Smith 528e28ce29aSPatrick Sanan .seealso: PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 529557d4da8SBarry Smith 530557d4da8SBarry Smith M*/ 531557d4da8SBarry Smith #define PETSC_DECIDE -1 532557d4da8SBarry Smith 533557d4da8SBarry Smith /*MC 534d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 535d382aafbSBarry Smith where you wish PETSc to compute the required value. 536d382aafbSBarry Smith 537d382aafbSBarry Smith Level: beginner 538d382aafbSBarry Smith 539e28ce29aSPatrick Sanan Developer Note: 540e28ce29aSPatrick Sanan I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 541557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 542557d4da8SBarry Smith 5430298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 544d382aafbSBarry Smith 545d382aafbSBarry Smith M*/ 546d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 547d382aafbSBarry Smith 548d382aafbSBarry Smith /*MC 549557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 550557d4da8SBarry Smith where you wish PETSc to use the default. 551557d4da8SBarry Smith 552557d4da8SBarry Smith Level: beginner 553557d4da8SBarry Smith 554e28ce29aSPatrick Sanan Fortran Notes: 555e28ce29aSPatrick Sanan You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 556557d4da8SBarry Smith 5570298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 558557d4da8SBarry Smith 559557d4da8SBarry Smith M*/ 560557d4da8SBarry Smith #define PETSC_DEFAULT -2 561557d4da8SBarry Smith 562557d4da8SBarry Smith /*MC 563d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 564d382aafbSBarry Smith all the processs that PETSc knows about. 565d382aafbSBarry Smith 566d382aafbSBarry Smith Level: beginner 567d382aafbSBarry Smith 568e28ce29aSPatrick Sanan Notes: 569e28ce29aSPatrick Sanan By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 570d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 571d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 572a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 573a990b902SBarry Smith 574a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 575a990b902SBarry Smith is called because it may not have a valid value yet. 576d382aafbSBarry Smith 577d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 578d382aafbSBarry Smith 579d382aafbSBarry Smith M*/ 580014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 581d382aafbSBarry Smith 582d382aafbSBarry Smith /*MC 583503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 584d382aafbSBarry Smith 585d382aafbSBarry Smith Level: beginner 586d382aafbSBarry Smith 587e28ce29aSPatrick Sanan Notes: 588e28ce29aSPatrick Sanan Do not USE/access or set this variable before PetscInitialize() has been called. 589a990b902SBarry Smith 590d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 591d382aafbSBarry Smith 592d382aafbSBarry Smith M*/ 593d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 594d382aafbSBarry Smith 595d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 596014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 597014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 598014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5994cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 60082f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 601d382aafbSBarry Smith 602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 605d382aafbSBarry Smith 606d382aafbSBarry Smith /*MC 60795dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 608d382aafbSBarry Smith 609eca87e8dSBarry Smith Synopsis: 610aaa7dc30SBarry Smith #include <petscsys.h> 611eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 612eca87e8dSBarry Smith 613eca87e8dSBarry Smith Not Collective 614eca87e8dSBarry Smith 615d382aafbSBarry Smith Input Parameter: 616d382aafbSBarry Smith . m - number of bytes to allocate 617d382aafbSBarry Smith 618d382aafbSBarry Smith Output Parameter: 619d382aafbSBarry Smith . result - memory allocated 620d382aafbSBarry Smith 621d382aafbSBarry Smith Level: beginner 622d382aafbSBarry Smith 62349d7da52SJed Brown Notes: 62449d7da52SJed Brown Memory is always allocated at least double aligned 625d382aafbSBarry Smith 62649d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 627d382aafbSBarry Smith 628d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 629d382aafbSBarry Smith 630d382aafbSBarry Smith Concepts: memory allocation 631d382aafbSBarry Smith 632d382aafbSBarry Smith M*/ 63349d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 634d382aafbSBarry Smith 635d382aafbSBarry Smith /*MC 6363221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6373221ece2SMatthew G. Knepley 6383221ece2SMatthew G. Knepley Synopsis: 6393221ece2SMatthew G. Knepley #include <petscsys.h> 6403221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6413221ece2SMatthew G. Knepley 6423221ece2SMatthew G. Knepley Not Collective 6433221ece2SMatthew G. Knepley 6443221ece2SMatthew G. Knepley Input Parameters: 6453221ece2SMatthew G. Knepley + m - number of bytes to allocate 6463221ece2SMatthew G. Knepley - result - initial memory allocated 6473221ece2SMatthew G. Knepley 6483221ece2SMatthew G. Knepley Output Parameter: 6493221ece2SMatthew G. Knepley . result - new memory allocated 6503221ece2SMatthew G. Knepley 6513221ece2SMatthew G. Knepley Level: developer 6523221ece2SMatthew G. Knepley 6533221ece2SMatthew G. Knepley Notes: 6543221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6553221ece2SMatthew G. Knepley 6563221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6573221ece2SMatthew G. Knepley 6583221ece2SMatthew G. Knepley Concepts: memory allocation 6593221ece2SMatthew G. Knepley 6603221ece2SMatthew G. Knepley M*/ 6613221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6623221ece2SMatthew G. Knepley 6633221ece2SMatthew G. Knepley /*MC 664503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 665d382aafbSBarry Smith 666d382aafbSBarry Smith Synopsis: 667aaa7dc30SBarry Smith #include <petscsys.h> 668d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 669d382aafbSBarry Smith 670eca87e8dSBarry Smith Not Collective 671eca87e8dSBarry Smith 672eca87e8dSBarry Smith Input Parameters: 673eca87e8dSBarry Smith . addr - address to align (any pointer type) 674eca87e8dSBarry Smith 675d382aafbSBarry Smith Level: developer 676d382aafbSBarry Smith 677d382aafbSBarry Smith .seealso: PetscMallocAlign() 678d382aafbSBarry Smith 679d382aafbSBarry Smith Concepts: memory allocation 680d382aafbSBarry Smith M*/ 681d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 682d382aafbSBarry Smith 683d382aafbSBarry Smith /*MC 684785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 685d382aafbSBarry Smith 686eca87e8dSBarry Smith Synopsis: 687aaa7dc30SBarry Smith #include <petscsys.h> 688785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 689785e854fSJed Brown 690785e854fSJed Brown Not Collective 691785e854fSJed Brown 692785e854fSJed Brown Input Parameter: 693390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 694785e854fSJed Brown 695785e854fSJed Brown Output Parameter: 696785e854fSJed Brown . r1 - memory allocated in first chunk 697785e854fSJed Brown 698e28ce29aSPatrick Sanan Note: 699e28ce29aSPatrick Sanan This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 700390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 701390e1bf2SBarry Smith $ PetscInt *id; 702390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 703390e1bf2SBarry Smith not 704390e1bf2SBarry Smith $ PetscInt *id; 705390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 706390e1bf2SBarry Smith 707390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 708390e1bf2SBarry Smith 709390e1bf2SBarry Smith Level: beginner 710785e854fSJed Brown 7111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 712785e854fSJed Brown 713785e854fSJed Brown Concepts: memory allocation 714785e854fSJed Brown 715785e854fSJed Brown M*/ 7162553b7ecSJed Brown #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 717785e854fSJed Brown 718785e854fSJed Brown /*MC 7191795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 7201795a4d1SJed Brown 7211795a4d1SJed Brown Synopsis: 722aaa7dc30SBarry Smith #include <petscsys.h> 7231795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 7241795a4d1SJed Brown 7251795a4d1SJed Brown Not Collective 7261795a4d1SJed Brown 7271795a4d1SJed Brown Input Parameter: 7281795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 7291795a4d1SJed Brown 7301795a4d1SJed Brown Output Parameter: 7311795a4d1SJed Brown . r1 - memory allocated in first chunk 7321795a4d1SJed Brown 733e28ce29aSPatrick Sanan Notes: 734e28ce29aSPatrick Sanan See PetsMalloc1() for more details on usage. 735390e1bf2SBarry Smith 736390e1bf2SBarry Smith Level: beginner 7371795a4d1SJed Brown 7381795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 7391795a4d1SJed Brown 7401795a4d1SJed Brown Concepts: memory allocation 7411795a4d1SJed Brown 7421795a4d1SJed Brown M*/ 7432553b7ecSJed Brown #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 7441795a4d1SJed Brown 7451795a4d1SJed Brown /*MC 746dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 747d382aafbSBarry Smith 748eca87e8dSBarry Smith Synopsis: 749aaa7dc30SBarry Smith #include <petscsys.h> 750dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 751eca87e8dSBarry Smith 752eca87e8dSBarry Smith Not Collective 753eca87e8dSBarry Smith 754d382aafbSBarry Smith Input Parameter: 755d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 756dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 757d382aafbSBarry Smith 758d382aafbSBarry Smith Output Parameter: 759d382aafbSBarry Smith + r1 - memory allocated in first chunk 760d382aafbSBarry Smith - r2 - memory allocated in second chunk 761d382aafbSBarry Smith 762d382aafbSBarry Smith Level: developer 763d382aafbSBarry Smith 7641795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 765d382aafbSBarry Smith 766d382aafbSBarry Smith Concepts: memory allocation 767d382aafbSBarry Smith 768d382aafbSBarry Smith M*/ 7692553b7ecSJed Brown #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 770d382aafbSBarry Smith 771d382aafbSBarry Smith /*MC 7721795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 773d382aafbSBarry Smith 774eca87e8dSBarry Smith Synopsis: 775aaa7dc30SBarry Smith #include <petscsys.h> 7761795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 777eca87e8dSBarry Smith 778eca87e8dSBarry Smith Not Collective 779eca87e8dSBarry Smith 780d382aafbSBarry Smith Input Parameter: 781d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7821795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7831795a4d1SJed Brown 7841795a4d1SJed Brown Output Parameter: 7851795a4d1SJed Brown + r1 - memory allocated in first chunk 7861795a4d1SJed Brown - r2 - memory allocated in second chunk 7871795a4d1SJed Brown 7881795a4d1SJed Brown Level: developer 7891795a4d1SJed Brown 7901795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7911795a4d1SJed Brown 7921795a4d1SJed Brown Concepts: memory allocation 7931795a4d1SJed Brown M*/ 7942553b7ecSJed Brown #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 7951795a4d1SJed Brown 7961795a4d1SJed Brown /*MC 797dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 798d382aafbSBarry Smith 799d382aafbSBarry Smith Synopsis: 800aaa7dc30SBarry Smith #include <petscsys.h> 801dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 802d382aafbSBarry Smith 803d382aafbSBarry Smith Not Collective 804d382aafbSBarry Smith 805d382aafbSBarry Smith Input Parameter: 806d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 807d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 808dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 809d382aafbSBarry Smith 810d382aafbSBarry Smith Output Parameter: 811d382aafbSBarry Smith + r1 - memory allocated in first chunk 812d382aafbSBarry Smith . r2 - memory allocated in second chunk 813d382aafbSBarry Smith - r3 - memory allocated in third chunk 814d382aafbSBarry Smith 815d382aafbSBarry Smith Level: developer 816d382aafbSBarry Smith 8171795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 818d382aafbSBarry Smith 819d382aafbSBarry Smith Concepts: memory allocation 820d382aafbSBarry Smith 821d382aafbSBarry Smith M*/ 8222553b7ecSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 823d382aafbSBarry Smith 824d382aafbSBarry Smith /*MC 8251795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 826d382aafbSBarry Smith 827eca87e8dSBarry Smith Synopsis: 828aaa7dc30SBarry Smith #include <petscsys.h> 8291795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 830eca87e8dSBarry Smith 831eca87e8dSBarry Smith Not Collective 832eca87e8dSBarry Smith 833d382aafbSBarry Smith Input Parameter: 834d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 835d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8361795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8371795a4d1SJed Brown 8381795a4d1SJed Brown Output Parameter: 8391795a4d1SJed Brown + r1 - memory allocated in first chunk 8401795a4d1SJed Brown . r2 - memory allocated in second chunk 8411795a4d1SJed Brown - r3 - memory allocated in third chunk 8421795a4d1SJed Brown 8431795a4d1SJed Brown Level: developer 8441795a4d1SJed Brown 8451795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8461795a4d1SJed Brown 8471795a4d1SJed Brown Concepts: memory allocation 8481795a4d1SJed Brown M*/ 8492553b7ecSJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 8501795a4d1SJed Brown 8511795a4d1SJed Brown /*MC 852dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 853d382aafbSBarry Smith 854d382aafbSBarry Smith Synopsis: 855aaa7dc30SBarry Smith #include <petscsys.h> 856dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 857d382aafbSBarry Smith 858d382aafbSBarry Smith Not Collective 859d382aafbSBarry Smith 860d382aafbSBarry Smith Input Parameter: 861d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 862d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 863d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 864dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 865d382aafbSBarry Smith 866d382aafbSBarry Smith Output Parameter: 867d382aafbSBarry Smith + r1 - memory allocated in first chunk 868d382aafbSBarry Smith . r2 - memory allocated in second chunk 869d382aafbSBarry Smith . r3 - memory allocated in third chunk 870d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 871d382aafbSBarry Smith 872d382aafbSBarry Smith Level: developer 873d382aafbSBarry Smith 8741795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 875d382aafbSBarry Smith 876d382aafbSBarry Smith Concepts: memory allocation 877d382aafbSBarry Smith 878d382aafbSBarry Smith M*/ 8792553b7ecSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 880d382aafbSBarry Smith 881d382aafbSBarry Smith /*MC 8821795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 883d382aafbSBarry Smith 884eca87e8dSBarry Smith Synopsis: 885aaa7dc30SBarry Smith #include <petscsys.h> 8861795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 887eca87e8dSBarry Smith 888eca87e8dSBarry Smith Not Collective 889eca87e8dSBarry Smith 890e28ce29aSPatrick Sanan Input Parameters: 891d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 892d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 893d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8941795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8951795a4d1SJed Brown 896e28ce29aSPatrick Sanan Output Parameters: 8971795a4d1SJed Brown + r1 - memory allocated in first chunk 8981795a4d1SJed Brown . r2 - memory allocated in second chunk 8991795a4d1SJed Brown . r3 - memory allocated in third chunk 9001795a4d1SJed Brown - r4 - memory allocated in fourth chunk 9011795a4d1SJed Brown 9021795a4d1SJed Brown Level: developer 9031795a4d1SJed Brown 9041795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 9051795a4d1SJed Brown 9061795a4d1SJed Brown Concepts: memory allocation 9071795a4d1SJed Brown 9081795a4d1SJed Brown M*/ 9092553b7ecSJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 9101795a4d1SJed Brown 9111795a4d1SJed Brown /*MC 912dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 913d382aafbSBarry Smith 914d382aafbSBarry Smith Synopsis: 915aaa7dc30SBarry Smith #include <petscsys.h> 916dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 917d382aafbSBarry Smith 918d382aafbSBarry Smith Not Collective 919d382aafbSBarry Smith 920e28ce29aSPatrick Sanan Input Parameters: 921d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 922d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 923d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 924d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 925dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 926d382aafbSBarry Smith 927e28ce29aSPatrick Sanan Output Parameters: 928d382aafbSBarry Smith + r1 - memory allocated in first chunk 929d382aafbSBarry Smith . r2 - memory allocated in second chunk 930d382aafbSBarry Smith . r3 - memory allocated in third chunk 931d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 932d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 933d382aafbSBarry Smith 934d382aafbSBarry Smith Level: developer 935d382aafbSBarry Smith 9361795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 937d382aafbSBarry Smith 938d382aafbSBarry Smith Concepts: memory allocation 939d382aafbSBarry Smith 940d382aafbSBarry Smith M*/ 9412553b7ecSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 942d382aafbSBarry Smith 943d382aafbSBarry Smith /*MC 9441795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 945d382aafbSBarry Smith 946eca87e8dSBarry Smith Synopsis: 947aaa7dc30SBarry Smith #include <petscsys.h> 9481795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 949eca87e8dSBarry Smith 950eca87e8dSBarry Smith Not Collective 951eca87e8dSBarry Smith 952e28ce29aSPatrick Sanan Input Parameters: 953d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 954d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 955d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 956d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9571795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9581795a4d1SJed Brown 959e28ce29aSPatrick Sanan Output Parameters: 9601795a4d1SJed Brown + r1 - memory allocated in first chunk 9611795a4d1SJed Brown . r2 - memory allocated in second chunk 9621795a4d1SJed Brown . r3 - memory allocated in third chunk 9631795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9641795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9651795a4d1SJed Brown 9661795a4d1SJed Brown Level: developer 9671795a4d1SJed Brown 9681795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9691795a4d1SJed Brown 9701795a4d1SJed Brown Concepts: memory allocation 9711795a4d1SJed Brown 9721795a4d1SJed Brown M*/ 9732553b7ecSJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 974d382aafbSBarry Smith 975d382aafbSBarry Smith /*MC 976dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 977d382aafbSBarry Smith 978d382aafbSBarry Smith Synopsis: 979aaa7dc30SBarry Smith #include <petscsys.h> 980dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 981d382aafbSBarry Smith 982d382aafbSBarry Smith Not Collective 983d382aafbSBarry Smith 984e28ce29aSPatrick Sanan Input Parameters: 985d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 986d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 987d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 988d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 989d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 990dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 991d382aafbSBarry Smith 992e28ce29aSPatrick Sanan Output Parameteasr: 993d382aafbSBarry Smith + r1 - memory allocated in first chunk 994d382aafbSBarry Smith . r2 - memory allocated in second chunk 995d382aafbSBarry Smith . r3 - memory allocated in third chunk 996d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 997d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 998d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 999d382aafbSBarry Smith 1000d382aafbSBarry Smith Level: developer 1001d382aafbSBarry Smith 10021795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith Concepts: memory allocation 1005d382aafbSBarry Smith 1006d382aafbSBarry Smith M*/ 10072553b7ecSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 1008d382aafbSBarry Smith 1009d382aafbSBarry Smith /*MC 10101795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1011d382aafbSBarry Smith 1012eca87e8dSBarry Smith Synopsis: 1013aaa7dc30SBarry Smith #include <petscsys.h> 10141795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1015eca87e8dSBarry Smith 1016eca87e8dSBarry Smith Not Collective 1017eca87e8dSBarry Smith 1018e28ce29aSPatrick Sanan Input Parameters: 1019d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1020d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1021d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1022d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1023d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10241795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10251795a4d1SJed Brown 1026e28ce29aSPatrick Sanan Output Parameters: 10271795a4d1SJed Brown + r1 - memory allocated in first chunk 10281795a4d1SJed Brown . r2 - memory allocated in second chunk 10291795a4d1SJed Brown . r3 - memory allocated in third chunk 10301795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10311795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10321795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10331795a4d1SJed Brown 10341795a4d1SJed Brown Level: developer 10351795a4d1SJed Brown 10361795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10371795a4d1SJed Brown 10381795a4d1SJed Brown Concepts: memory allocation 10391795a4d1SJed Brown M*/ 10402553b7ecSJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 10411795a4d1SJed Brown 10421795a4d1SJed Brown /*MC 1043dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1044d382aafbSBarry Smith 1045d382aafbSBarry Smith Synopsis: 1046aaa7dc30SBarry Smith #include <petscsys.h> 1047dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1048d382aafbSBarry Smith 1049d382aafbSBarry Smith Not Collective 1050d382aafbSBarry Smith 1051e28ce29aSPatrick Sanan Input Parameters: 1052d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1053d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1054d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1055d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1056d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1057d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1058dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1059d382aafbSBarry Smith 1060e28ce29aSPatrick Sanan Output Parameters: 1061d382aafbSBarry Smith + r1 - memory allocated in first chunk 1062d382aafbSBarry Smith . r2 - memory allocated in second chunk 1063d382aafbSBarry Smith . r3 - memory allocated in third chunk 1064d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1065d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1066d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1067eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1068d382aafbSBarry Smith 1069d382aafbSBarry Smith Level: developer 1070d382aafbSBarry Smith 10711795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1072d382aafbSBarry Smith 1073d382aafbSBarry Smith Concepts: memory allocation 1074d382aafbSBarry Smith 1075d382aafbSBarry Smith M*/ 10762553b7ecSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 1077d382aafbSBarry Smith 1078d382aafbSBarry Smith /*MC 10791795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10801795a4d1SJed Brown 10811795a4d1SJed Brown Synopsis: 1082aaa7dc30SBarry Smith #include <petscsys.h> 10831795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10841795a4d1SJed Brown 10851795a4d1SJed Brown Not Collective 10861795a4d1SJed Brown 1087e28ce29aSPatrick Sanan Input Parameters: 10881795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10891795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10901795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10911795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10921795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10931795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10941795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10951795a4d1SJed Brown 1096e28ce29aSPatrick Sanan Output Parameters: 10971795a4d1SJed Brown + r1 - memory allocated in first chunk 10981795a4d1SJed Brown . r2 - memory allocated in second chunk 10991795a4d1SJed Brown . r3 - memory allocated in third chunk 11001795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11011795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11021795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11031795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11041795a4d1SJed Brown 11051795a4d1SJed Brown Level: developer 11061795a4d1SJed Brown 11071795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11081795a4d1SJed Brown 11091795a4d1SJed Brown Concepts: memory allocation 11101795a4d1SJed Brown M*/ 11112553b7ecSJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 11121795a4d1SJed Brown 11131795a4d1SJed Brown /*MC 1114503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1115d382aafbSBarry Smith 1116eca87e8dSBarry Smith Synopsis: 1117aaa7dc30SBarry Smith #include <petscsys.h> 1118b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1119eca87e8dSBarry Smith 1120eca87e8dSBarry Smith Not Collective 1121eca87e8dSBarry Smith 1122d382aafbSBarry Smith Output Parameter: 1123b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith Level: beginner 1126d382aafbSBarry Smith 1127390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith Concepts: memory allocation 1130d382aafbSBarry Smith 1131d382aafbSBarry Smith M*/ 1132b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1133ad0619ddSBarry Smith 1134ad0619ddSBarry Smith /*MC 1135b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1136ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1137ad0619ddSBarry Smith 1138ad0619ddSBarry Smith Synopsis: 1139aaa7dc30SBarry Smith #include <petscsys.h> 1140b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1141ad0619ddSBarry Smith 1142ad0619ddSBarry Smith Not Collective 1143ad0619ddSBarry Smith 1144ad0619ddSBarry Smith Input Parameter: 1145b00a9115SJed Brown . obj - object memory is logged to 1146ad0619ddSBarry Smith 1147ad0619ddSBarry Smith Output Parameter: 1148b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1149ad0619ddSBarry Smith 1150ad0619ddSBarry Smith Level: developer 1151ad0619ddSBarry Smith 1152390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1153ad0619ddSBarry Smith 1154ad0619ddSBarry Smith Concepts: memory allocation 1155ad0619ddSBarry Smith 1156ad0619ddSBarry Smith M*/ 1157d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith /*MC 1160d382aafbSBarry Smith PetscFree - Frees memory 1161d382aafbSBarry Smith 1162eca87e8dSBarry Smith Synopsis: 1163aaa7dc30SBarry Smith #include <petscsys.h> 1164eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1165eca87e8dSBarry Smith 1166eca87e8dSBarry Smith Not Collective 1167eca87e8dSBarry Smith 1168d382aafbSBarry Smith Input Parameter: 1169390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1170d382aafbSBarry Smith 1171d382aafbSBarry Smith Level: beginner 1172d382aafbSBarry Smith 117349d7da52SJed Brown Notes: 1174390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1175390e1bf2SBarry Smith 117649d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1177d382aafbSBarry Smith 1178390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith Concepts: memory allocation 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith M*/ 118349d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1184d382aafbSBarry Smith 1185d382aafbSBarry Smith /*MC 1186d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1187d382aafbSBarry Smith 1188eca87e8dSBarry Smith Synopsis: 1189aaa7dc30SBarry Smith #include <petscsys.h> 1190eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1191eca87e8dSBarry Smith 1192eca87e8dSBarry Smith Not Collective 1193eca87e8dSBarry Smith 1194e28ce29aSPatrick Sanan Input Parameters: 1195d382aafbSBarry Smith + memory1 - memory to free 1196d382aafbSBarry Smith - memory2 - 2nd memory to free 1197d382aafbSBarry Smith 1198d382aafbSBarry Smith Level: developer 1199d382aafbSBarry Smith 1200d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith Concepts: memory allocation 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith M*/ 1207ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith /*MC 1210d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1211d382aafbSBarry Smith 1212eca87e8dSBarry Smith Synopsis: 1213aaa7dc30SBarry Smith #include <petscsys.h> 1214eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1215eca87e8dSBarry Smith 1216eca87e8dSBarry Smith Not Collective 1217eca87e8dSBarry Smith 1218e28ce29aSPatrick Sanan Input Parameters: 1219d382aafbSBarry Smith + memory1 - memory to free 1220d382aafbSBarry Smith . memory2 - 2nd memory to free 1221d382aafbSBarry Smith - memory3 - 3rd memory to free 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Level: developer 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith Concepts: memory allocation 1230d382aafbSBarry Smith 1231d382aafbSBarry Smith M*/ 1232ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1233d382aafbSBarry Smith 1234d382aafbSBarry Smith /*MC 1235d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1236d382aafbSBarry Smith 1237eca87e8dSBarry Smith Synopsis: 1238aaa7dc30SBarry Smith #include <petscsys.h> 1239eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1240eca87e8dSBarry Smith 1241eca87e8dSBarry Smith Not Collective 1242eca87e8dSBarry Smith 1243e28ce29aSPatrick Sanan Input Parameters: 1244d382aafbSBarry Smith + m1 - memory to free 1245d382aafbSBarry Smith . m2 - 2nd memory to free 1246d382aafbSBarry Smith . m3 - 3rd memory to free 1247d382aafbSBarry Smith - m4 - 4th memory to free 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith Level: developer 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1252d382aafbSBarry Smith 1253d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith Concepts: memory allocation 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith M*/ 1258ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith /*MC 1261d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1262d382aafbSBarry Smith 1263eca87e8dSBarry Smith Synopsis: 1264aaa7dc30SBarry Smith #include <petscsys.h> 1265eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1266eca87e8dSBarry Smith 1267eca87e8dSBarry Smith Not Collective 1268eca87e8dSBarry Smith 1269e28ce29aSPatrick Sanan Input Parameters: 1270d382aafbSBarry Smith + m1 - memory to free 1271d382aafbSBarry Smith . m2 - 2nd memory to free 1272d382aafbSBarry Smith . m3 - 3rd memory to free 1273d382aafbSBarry Smith . m4 - 4th memory to free 1274d382aafbSBarry Smith - m5 - 5th memory to free 1275d382aafbSBarry Smith 1276d382aafbSBarry Smith Level: developer 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1281d382aafbSBarry Smith 1282d382aafbSBarry Smith Concepts: memory allocation 1283d382aafbSBarry Smith 1284d382aafbSBarry Smith M*/ 1285ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith /*MC 1288d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1289d382aafbSBarry Smith 1290eca87e8dSBarry Smith Synopsis: 1291aaa7dc30SBarry Smith #include <petscsys.h> 1292eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1293eca87e8dSBarry Smith 1294eca87e8dSBarry Smith Not Collective 1295eca87e8dSBarry Smith 1296e28ce29aSPatrick Sanan Input Parameters: 1297d382aafbSBarry Smith + m1 - memory to free 1298d382aafbSBarry Smith . m2 - 2nd memory to free 1299d382aafbSBarry Smith . m3 - 3rd memory to free 1300d382aafbSBarry Smith . m4 - 4th memory to free 1301d382aafbSBarry Smith . m5 - 5th memory to free 1302d382aafbSBarry Smith - m6 - 6th memory to free 1303d382aafbSBarry Smith 1304d382aafbSBarry Smith 1305d382aafbSBarry Smith Level: developer 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1308d382aafbSBarry Smith 1309d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1310d382aafbSBarry Smith 1311d382aafbSBarry Smith Concepts: memory allocation 1312d382aafbSBarry Smith 1313d382aafbSBarry Smith M*/ 1314ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith /*MC 1317d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1318d382aafbSBarry Smith 1319eca87e8dSBarry Smith Synopsis: 1320aaa7dc30SBarry Smith #include <petscsys.h> 1321eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1322eca87e8dSBarry Smith 1323eca87e8dSBarry Smith Not Collective 1324eca87e8dSBarry Smith 1325e28ce29aSPatrick Sanan Input Parameters: 1326d382aafbSBarry Smith + m1 - memory to free 1327d382aafbSBarry Smith . m2 - 2nd memory to free 1328d382aafbSBarry Smith . m3 - 3rd memory to free 1329d382aafbSBarry Smith . m4 - 4th memory to free 1330d382aafbSBarry Smith . m5 - 5th memory to free 1331d382aafbSBarry Smith . m6 - 6th memory to free 1332d382aafbSBarry Smith - m7 - 7th memory to free 1333d382aafbSBarry Smith 1334d382aafbSBarry Smith 1335d382aafbSBarry Smith Level: developer 1336d382aafbSBarry Smith 1337d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1338d382aafbSBarry Smith 1339d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1340d382aafbSBarry Smith PetscMalloc7() 1341d382aafbSBarry Smith 1342d382aafbSBarry Smith Concepts: memory allocation 1343d382aafbSBarry Smith 1344d382aafbSBarry Smith M*/ 1345ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1346d382aafbSBarry Smith 1347ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1348ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1349efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1350efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13513221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1352ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 1353efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1355d382aafbSBarry Smith 1356d382aafbSBarry Smith /* 1357c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1358c1706be6SHong Zhang */ 1359c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1360c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1361c1706be6SHong Zhang 1362c1706be6SHong Zhang /* 1363a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1364a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1365a5057860SBarry Smith timing etc. 1366a5057860SBarry Smith */ 1367a5057860SBarry Smith typedef double PetscLogDouble; 1368a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1369a5057860SBarry Smith 1370a5057860SBarry Smith /* 137166d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1372d382aafbSBarry Smith */ 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13780acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1379efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1381574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1383d382aafbSBarry Smith 1384d382aafbSBarry Smith /*E 1385d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1386d382aafbSBarry Smith 1387d382aafbSBarry Smith Level: beginner 1388d382aafbSBarry Smith 1389e8a7dd7fSJed Brown Notes: 1390e8a7dd7fSJed Brown Use of this should be avoided if one can directly use MPI_Datatype instead. 139194fbd55eSBarry Smith 1392e28ce29aSPatrick Sanan Developer comment: 1393e28ce29aSPatrick Sanan It would be nice if we could always just use MPI Datatypes, why can we not? 1394d382aafbSBarry Smith 1395d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1396d382aafbSBarry Smith PetscDataTypeGetSize() 1397d382aafbSBarry Smith 1398d382aafbSBarry Smith E*/ 1399d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1400570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14016a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1402d382aafbSBarry Smith 1403d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1404d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1405d382aafbSBarry Smith #else 1406ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1407d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 140859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 140959a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1410570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1411570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1412d382aafbSBarry Smith #else 1413d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1414d382aafbSBarry Smith #endif 1415d382aafbSBarry Smith #endif 1416ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1417d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 141859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141959a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1420570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1421570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1422d382aafbSBarry Smith #else 1423d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1424d382aafbSBarry Smith #endif 1425d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1426d382aafbSBarry Smith 1427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14308e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1431d382aafbSBarry Smith 1432d382aafbSBarry Smith /* 1433d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1434d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1435d382aafbSBarry Smith functionality and/or error checking. 1436d382aafbSBarry Smith */ 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1441d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1449*a126751eSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrlcat(char[],const char[],size_t); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14532f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14582c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 146147340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14626fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14636991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14646991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1466d382aafbSBarry Smith 1467573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1468573b0fb4SBarry Smith 1469d382aafbSBarry Smith /*S 1470d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1471d382aafbSBarry Smith 1472d382aafbSBarry Smith Level: intermediate 1473d382aafbSBarry Smith 1474d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1475d382aafbSBarry Smith S*/ 1476d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1477d382aafbSBarry Smith 1478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1479014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1480014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1481d382aafbSBarry Smith 1482a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1483a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1484a53986e1SJed Brown 1485d382aafbSBarry Smith /* 1486d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1487d382aafbSBarry Smith */ 1488367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1489570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1490014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14912414b3c7SJed Brown #else 14922414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14932414b3c7SJed Brown #endif 1494570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1495014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1496014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1497d9822059SBarry Smith #else 1498d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1499d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1500d9822059SBarry Smith #endif 1501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1502d382aafbSBarry Smith 1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1505eb3f98d2SBarry Smith 1506d382aafbSBarry Smith /*S 1507d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1508d382aafbSBarry Smith 1509d382aafbSBarry Smith Level: beginner 1510d382aafbSBarry Smith 1511e28ce29aSPatrick Sanan Note: 1512e28ce29aSPatrick Sanan This is the base class from which all PETSc objects are derived from. 1513d382aafbSBarry Smith 15142b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1515d382aafbSBarry Smith S*/ 1516d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1517d382aafbSBarry Smith 1518270bf2e7SJed Brown /*MC 1519127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1520127c8a3bSJed Brown 1521127c8a3bSJed Brown Level: developer 1522127c8a3bSJed Brown 1523e28ce29aSPatrick Sanan Notes: 1524e28ce29aSPatrick Sanan Unlike pointer values, object ids are never reused. 1525127c8a3bSJed Brown 1526127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1527127c8a3bSJed Brown M*/ 152806e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 152906e41213SSatish Balay typedef int PetscObjectId; 153006e41213SSatish Balay #else 1531bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 153206e41213SSatish Balay #endif 1533127c8a3bSJed Brown 1534127c8a3bSJed Brown /*MC 1535270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1536270bf2e7SJed Brown 1537270bf2e7SJed Brown Level: developer 1538270bf2e7SJed Brown 1539270bf2e7SJed Brown Notes: 1540270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1541270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1542270bf2e7SJed Brown 15438dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1544270bf2e7SJed Brown M*/ 154506e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 154606e41213SSatish Balay typedef int PetscObjectState; 154706e41213SSatish Balay #else 1548bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 154906e41213SSatish Balay #endif 1550270bf2e7SJed Brown 1551d382aafbSBarry Smith /*S 1552140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1553d382aafbSBarry Smith by string name 1554d382aafbSBarry Smith 1555d382aafbSBarry Smith Level: advanced 1556d382aafbSBarry Smith 1557140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1558d382aafbSBarry Smith S*/ 1559140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1560d382aafbSBarry Smith 1561d382aafbSBarry Smith /*E 1562d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1563d382aafbSBarry Smith 1564d382aafbSBarry Smith Level: beginner 1565d382aafbSBarry Smith 15661cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15671cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15681cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15691cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15701cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1571d382aafbSBarry Smith 1572d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1573d382aafbSBarry Smith E*/ 1574d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1575d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1576d6a4318aSJed Brown 1577639ff905SBarry Smith /* 1578639ff905SBarry Smith Defines PETSc error handling. 1579639ff905SBarry Smith */ 1580639ff905SBarry Smith #include <petscerror.h> 1581d382aafbSBarry Smith 15820700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1583014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1584014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1586d382aafbSBarry Smith 1587d382aafbSBarry Smith /* 1588d382aafbSBarry Smith Routines that get memory usage information from the OS 1589d382aafbSBarry Smith */ 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1593b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1594d382aafbSBarry Smith 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1597d382aafbSBarry Smith 1598d382aafbSBarry Smith /* 1599d382aafbSBarry Smith Initialization of PETSc 1600d382aafbSBarry Smith */ 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1611d382aafbSBarry Smith 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1613607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1614d382aafbSBarry Smith 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1619d382aafbSBarry Smith 1620d382aafbSBarry Smith /* 1621d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16222981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1623d382aafbSBarry Smith */ 1624638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1625638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1626638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1627d382aafbSBarry Smith 1628d382aafbSBarry Smith /* 1629d382aafbSBarry Smith Functions that can act on any PETSc object. 1630d382aafbSBarry Smith */ 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1649bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1650bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16530eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16540eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1656d382aafbSBarry Smith 1657665c2dedSJed Brown #include <petscviewertypes.h> 1658639ff905SBarry Smith #include <petscoptions.h> 1659639ff905SBarry Smith 16600633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16610633abcbSJed Brown 1662639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1663c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1664dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1665639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16660005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16670005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1675685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 16784099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1682d382aafbSBarry Smith 1683e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16847aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1685e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1686e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1687e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1688e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1689e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1690e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1691e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1692e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1693e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 169415681b3cSBarry Smith 1695ec7429eaSBarry Smith #else 16967aab2a10SBarry Smith #define PetscSAWsBlock() 0 1697e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1698e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1699e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1700e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1701e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1702e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1703e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1704e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1705e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 170615681b3cSBarry Smith 1707ec7429eaSBarry Smith #endif 1708b90c6cbeSBarry Smith 17097d5d4d99SBarry Smith typedef void* PetscDLHandle; 1710e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 171182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17147d5d4d99SBarry Smith 17155fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1716a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17175fe58b6fSBarry Smith #endif 17187eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1719a64a8e02SBarry Smith 1720d382aafbSBarry Smith /*S 1721140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1722d382aafbSBarry Smith 17231d0fab5eSBarry Smith Level: developer 1724d382aafbSBarry Smith 1725e28ce29aSPatrick Sanan Notes: 1726e28ce29aSPatrick Sanan Used by PetscObjectCompose() and PetscObjectQuery() 17271d0fab5eSBarry Smith 1728140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1729d382aafbSBarry Smith S*/ 1730140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1731d382aafbSBarry Smith 1732140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1733140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1734140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1735140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1736140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1737140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1738d382aafbSBarry Smith 1739d382aafbSBarry Smith /* 1740503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1741d382aafbSBarry Smith link libraries that will be loaded as needed. 1742d382aafbSBarry Smith */ 1743a240a19fSJed Brown 1744a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1745a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1746140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17471c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17481c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1749140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1750140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1751140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1752140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1753d382aafbSBarry Smith 1754d382aafbSBarry Smith /*S 1755d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1756d382aafbSBarry Smith 1757d382aafbSBarry Smith Level: advanced 1758d382aafbSBarry Smith 1759d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1760d382aafbSBarry Smith S*/ 1761d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1762014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith /* 1772d382aafbSBarry Smith Useful utility routines 1773d382aafbSBarry Smith */ 1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 17806ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxInt(MPI_Comm,PetscInt[],PetscInt[]); 17816ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxReal(MPI_Comm,PetscReal[],PetscReal[]); 1782d382aafbSBarry Smith 1783503cfb0cSBarry Smith /* 1784ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1785503cfb0cSBarry Smith 1786e28ce29aSPatrick Sanan Notes: 1787e28ce29aSPatrick Sanan This is useful in cases like 1788503cfb0cSBarry Smith $ int *a; 1789ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17901cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1791503cfb0cSBarry Smith */ 1792d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1793503cfb0cSBarry Smith 1794d382aafbSBarry Smith /*MC 1795d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1796d382aafbSBarry Smith 1797d382aafbSBarry Smith Synopsis: 1798aaa7dc30SBarry Smith #include <petscsys.h> 1799d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1800d382aafbSBarry Smith 1801eca87e8dSBarry Smith Not Collective 1802eca87e8dSBarry Smith 1803d382aafbSBarry Smith Input Parameters: 1804d382aafbSBarry Smith . format - the usual printf() format string 1805d382aafbSBarry Smith 1806d382aafbSBarry Smith Level: developer 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith Fortran Note: 1809d382aafbSBarry Smith This routine is not supported in Fortran. 1810d382aafbSBarry Smith 1811d382aafbSBarry Smith Concepts: help messages^printing 1812d382aafbSBarry Smith Concepts: printing^help messages 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1815d382aafbSBarry Smith M*/ 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1817d382aafbSBarry Smith 1818fcfd50ebSBarry Smith /* 1819fcfd50ebSBarry Smith Defines PETSc profiling. 1820fcfd50ebSBarry Smith */ 18212c8e378dSBarry Smith #include <petsclog.h> 1822fcfd50ebSBarry Smith 1823fcfd50ebSBarry Smith /* 1824fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1825fcfd50ebSBarry Smith */ 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1833fcfd50ebSBarry Smith 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1840016831caSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*); 184174ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1842d382aafbSBarry Smith #endif 1843d382aafbSBarry Smith 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18460ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1851d382aafbSBarry Smith 1852d382aafbSBarry Smith /*S 1853d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith Level: advanced 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1858d382aafbSBarry Smith S*/ 1859014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1860d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1866b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1867d382aafbSBarry Smith 1868d382aafbSBarry Smith /* 1869d382aafbSBarry Smith For use in debuggers 1870d382aafbSBarry Smith */ 1871014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1872014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1873014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1874014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1875014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1876d382aafbSBarry Smith 1877a663daf8SBarry Smith #include <stddef.h> 1878a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1879d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1880d382aafbSBarry Smith #include <stdlib.h> 1881d382aafbSBarry Smith #endif 18826c7e564aSBarry Smith 18834a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1884d382aafbSBarry Smith #include <xmmintrin.h> 1885d382aafbSBarry Smith #endif 1886d382aafbSBarry Smith 1887d382aafbSBarry Smith /*@C 1888d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1889d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1890d382aafbSBarry Smith PetscMemmove() in that case. 1891d382aafbSBarry Smith 1892d382aafbSBarry Smith Not Collective 1893d382aafbSBarry Smith 1894d382aafbSBarry Smith Input Parameters: 1895d382aafbSBarry Smith + b - pointer to initial memory space 1896d382aafbSBarry Smith - n - length (in bytes) of space to copy 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith Output Parameter: 1899d382aafbSBarry Smith . a - pointer to copy space 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith Level: intermediate 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith Compile Option: 1904d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1905d382aafbSBarry Smith for memory copies on double precision values. 1906d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1907d382aafbSBarry Smith for memory copies on double precision values. 1908d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1909d382aafbSBarry Smith for memory copies on double precision values. 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith Note: 1912d382aafbSBarry Smith This routine is analogous to memcpy(). 1913d382aafbSBarry Smith 19141fd49c25SBarry Smith Not available from Fortran 19151fd49c25SBarry Smith 1916f5f57ec0SBarry Smith Developer Note: this is inlined for fastest performance 1917f5f57ec0SBarry Smith 1918d382aafbSBarry Smith Concepts: memory^copying 1919d382aafbSBarry Smith Concepts: copying^memory 1920d382aafbSBarry Smith 19211fd49c25SBarry Smith .seealso: PetscMemmove(), PetscStrallocpy() 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith @*/ 19247087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1925d382aafbSBarry Smith { 1926d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1927c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1928c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1929a7e36092SMatthew G Knepley PetscFunctionBegin; 1930e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1931e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1932a7e36092SMatthew G Knepley #else 1933d382aafbSBarry Smith PetscFunctionBegin; 1934a7e36092SMatthew G Knepley #endif 1935a47a537aSLisandro Dalcin if (a != b && n > 0) { 1936d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1937e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1938d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1939d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1940d382aafbSBarry Smith #endif 1941d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1942c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1943d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1944d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1945c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1946c5df96a5SBarry Smith PetscErrorCode ierr; 1947c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19488b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1949d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1950d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1951d382aafbSBarry Smith #else 1952d382aafbSBarry Smith size_t i; 1953d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1954d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1955d382aafbSBarry Smith #endif 1956d382aafbSBarry Smith } else { 1957d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1958d382aafbSBarry Smith } 1959d382aafbSBarry Smith #else 1960d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith } 1963d382aafbSBarry Smith PetscFunctionReturn(0); 1964d382aafbSBarry Smith } 1965d382aafbSBarry Smith 1966d382aafbSBarry Smith /*@C 1967d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1968d382aafbSBarry Smith 1969d382aafbSBarry Smith Not Collective 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith Input Parameters: 1972d382aafbSBarry Smith + a - pointer to beginning memory location 1973d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith Level: intermediate 1976d382aafbSBarry Smith 1977d382aafbSBarry Smith Compile Option: 1978d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1979d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1980d382aafbSBarry Smith 19811fd49c25SBarry Smith Not available from Fortran 19821fd49c25SBarry Smith 1983503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1984503cfb0cSBarry Smith 1985d382aafbSBarry Smith Concepts: memory^zeroing 1986d382aafbSBarry Smith Concepts: zeroing^memory 1987d382aafbSBarry Smith 1988d382aafbSBarry Smith .seealso: PetscMemcpy() 1989d382aafbSBarry Smith @*/ 19907087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1991d382aafbSBarry Smith { 1992d382aafbSBarry Smith if (n > 0) { 1993d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1994e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1995d382aafbSBarry Smith #endif 1996d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1997d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1998d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1999d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2000d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2001d382aafbSBarry Smith } else { 2002d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2003d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2004d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2005d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2006d382aafbSBarry Smith } else { 2007d382aafbSBarry Smith #endif 2008d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2009d382aafbSBarry Smith bzero((char *)a,n); 2010d382aafbSBarry Smith #else 2011d382aafbSBarry Smith memset((char*)a,0,n); 2012d382aafbSBarry Smith #endif 2013d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2014d382aafbSBarry Smith } 2015d382aafbSBarry Smith #endif 2016d382aafbSBarry Smith } 2017d382aafbSBarry Smith return 0; 2018d382aafbSBarry Smith } 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith /*MC 2021d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2022d382aafbSBarry Smith 2023eca87e8dSBarry Smith Synopsis: 2024aaa7dc30SBarry Smith #include <petscsys.h> 2025eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2026eca87e8dSBarry Smith 2027d382aafbSBarry Smith Not Collective 2028d382aafbSBarry Smith 2029d382aafbSBarry Smith Input Parameters: 2030d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2031d382aafbSBarry Smith . n - number of elements to fetch 2032d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203350d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2034d382aafbSBarry Smith 2035d382aafbSBarry Smith Level: developer 2036d382aafbSBarry Smith 2037d382aafbSBarry Smith Notes: 2038d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2039d382aafbSBarry Smith 204050d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204150d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204250d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204363cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 204463cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 204563cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2046d382aafbSBarry Smith 2047d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2048d382aafbSBarry Smith address). 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith Concepts: memory 2051d382aafbSBarry Smith M*/ 2052d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2053d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2054d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2055d382aafbSBarry Smith } while (0) 2056d382aafbSBarry Smith 2057d382aafbSBarry Smith /* 2058d382aafbSBarry Smith Determine if some of the kernel computation routines use 2059d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2060d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2061d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2062e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2063d382aafbSBarry Smith */ 2064d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2067d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2068d382aafbSBarry Smith #endif 2069d382aafbSBarry Smith 20705a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20715a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2072d382aafbSBarry Smith #endif 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2075d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2076d382aafbSBarry Smith #endif 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2079d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2080d382aafbSBarry Smith #endif 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2083d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2084d382aafbSBarry Smith #endif 2085d382aafbSBarry Smith 2086d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2087d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2088d382aafbSBarry Smith #endif 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2091d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2092d382aafbSBarry Smith #endif 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2095d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2096d382aafbSBarry Smith #endif 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2099d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2100d382aafbSBarry Smith #endif 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2103d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2104d382aafbSBarry Smith #endif 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2107d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2108d382aafbSBarry Smith #endif 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2111d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2115d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2116d382aafbSBarry Smith #endif 2117d382aafbSBarry Smith 2118d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2119d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2120d382aafbSBarry Smith #endif 2121d382aafbSBarry Smith 2122d382aafbSBarry Smith #endif 2123d382aafbSBarry Smith 2124d382aafbSBarry Smith /* 2125d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2126d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2127d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2128d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2129d382aafbSBarry Smith ugly extern "C" {} wrappers. 2130d382aafbSBarry Smith */ 2131d382aafbSBarry Smith #if defined(__cplusplus) 2132d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2133d382aafbSBarry Smith #define EXTERN_C_END } 2134d382aafbSBarry Smith #else 2135d382aafbSBarry Smith #define EXTERN_C_BEGIN 2136d382aafbSBarry Smith #define EXTERN_C_END 2137d382aafbSBarry Smith #endif 2138d382aafbSBarry Smith 2139d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2140d382aafbSBarry Smith 2141d382aafbSBarry Smith /*MC 2142d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2143d382aafbSBarry Smith communication 2144d382aafbSBarry Smith 2145d382aafbSBarry Smith Level: beginner 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2150d382aafbSBarry Smith M*/ 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith /*MC 2153d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2154390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2155390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2156390e1bf2SBarry Smith 2157e28ce29aSPatrick Sanan Notes: 2158e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. They will automatically work correctly regardless of the size of PetscScalar. 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith Level: beginner 2161d382aafbSBarry Smith 2162e28ce29aSPatrick Sanan .seealso: PetscReal, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2163d382aafbSBarry Smith M*/ 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith /*MC 21668619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21678619c96cSJed Brown 21688619c96cSJed Brown Synopsis: 21698619c96cSJed Brown #include <petscsys.h> 21708619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21718619c96cSJed Brown 2172e28ce29aSPatrick Sanan Notes: 2173e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2174e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscComplex. 2175390e1bf2SBarry Smith 2176390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2177390e1bf2SBarry Smith 21788cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21798619c96cSJed Brown 2180e28ce29aSPatrick Sanan Level: beginner 2181e28ce29aSPatrick Sanan 2182e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 21838619c96cSJed Brown M*/ 21848619c96cSJed Brown 21858619c96cSJed Brown /*MC 2186d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2187d382aafbSBarry Smith 2188e28ce29aSPatrick Sanan 2189e28ce29aSPatrick Sanan Notes: 2190e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX, etc. for operations. 2191e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscReal. 2192e28ce29aSPatrick Sanan 2193e28ce29aSPatrick Sanan See PetscScalar for details on how to ./configure the size of PetscReal. 2194e28ce29aSPatrick Sanan 2195d382aafbSBarry Smith Level: beginner 2196d382aafbSBarry Smith 2197e28ce29aSPatrick Sanan .seealso: PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2198d382aafbSBarry Smith M*/ 2199d382aafbSBarry Smith 2200d382aafbSBarry Smith /*MC 2201d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2202d382aafbSBarry Smith 2203e28ce29aSPatrick Sanan Notes: 2204e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalar values, pass this value. 2205e28ce29aSPatrick Sanan 2206d382aafbSBarry Smith Level: beginner 2207d382aafbSBarry Smith 2208e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_COMPLEX, MPIU_INT 2209e28ce29aSPatrick Sanan M*/ 2210d382aafbSBarry Smith 2211e28ce29aSPatrick Sanan /*MC 2212e28ce29aSPatrick Sanan MPIU_COMPLEX - MPI datatype corresponding to PetscComplex 2213e28ce29aSPatrick Sanan 2214e28ce29aSPatrick Sanan Notes: 2215e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscComplex or array of PetscComplex values, pass this value. 2216e28ce29aSPatrick Sanan 2217e28ce29aSPatrick Sanan Level: beginner 2218e28ce29aSPatrick Sanan 2219e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 2220e28ce29aSPatrick Sanan M*/ 2221e28ce29aSPatrick Sanan 2222e28ce29aSPatrick Sanan /*MC 2223e28ce29aSPatrick Sanan MPIU_REAL - MPI datatype corresponding to PetscReal 2224e28ce29aSPatrick Sanan 2225e28ce29aSPatrick Sanan Notes: 2226e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscReal or array of PetscReal values, pass this value. 2227e28ce29aSPatrick Sanan 2228e28ce29aSPatrick Sanan Level: beginner 2229e28ce29aSPatrick Sanan 2230e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2231d382aafbSBarry Smith M*/ 2232d382aafbSBarry Smith 2233d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2234d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2235014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2236014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2237d382aafbSBarry Smith #else 2238d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2239d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2240d382aafbSBarry Smith #endif 2241d382aafbSBarry Smith #endif 2242d382aafbSBarry Smith 2243d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2244d382aafbSBarry Smith 2245d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2246d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2247d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2248d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2249d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2250d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2251d382aafbSBarry Smith 225261b0d812SBarry Smith /*@C 225361b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 225461b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 225561b0d812SBarry Smith 225661b0d812SBarry Smith Not Collective 225761b0d812SBarry Smith 225861b0d812SBarry Smith Input Parameter: 225961b0d812SBarry Smith . a - the PetscInt value 226061b0d812SBarry Smith 226161b0d812SBarry Smith Output Parameter: 226261b0d812SBarry Smith . b - the resulting PetscBLASInt value 226361b0d812SBarry Smith 226461b0d812SBarry Smith Level: advanced 226561b0d812SBarry Smith 22661fd49c25SBarry Smith Not available from Fortran 22671fd49c25SBarry Smith 226861b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 226961b0d812SBarry Smith @*/ 2270c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2271c5df96a5SBarry Smith { 2272c5df96a5SBarry Smith PetscFunctionBegin; 2273ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2274c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2275c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2276c5df96a5SBarry Smith #endif 2277c5df96a5SBarry Smith PetscFunctionReturn(0); 2278c5df96a5SBarry Smith } 2279c5df96a5SBarry Smith 228061b0d812SBarry Smith /*@C 228161b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 228261b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 228361b0d812SBarry Smith 228461b0d812SBarry Smith Not Collective 228561b0d812SBarry Smith 228661b0d812SBarry Smith Input Parameter: 228761b0d812SBarry Smith . a - the PetscInt value 228861b0d812SBarry Smith 228961b0d812SBarry Smith Output Parameter: 229061b0d812SBarry Smith . b - the resulting PetscMPIInt value 229161b0d812SBarry Smith 229261b0d812SBarry Smith Level: advanced 229361b0d812SBarry Smith 22941fd49c25SBarry Smith Not available from Fortran 22951fd49c25SBarry Smith 229661b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 229761b0d812SBarry Smith @*/ 22984dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22994dc2109aSBarry Smith { 23004dc2109aSBarry Smith PetscFunctionBegin; 2301ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 23024dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 23034dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 23044dc2109aSBarry Smith #endif 23054dc2109aSBarry Smith PetscFunctionReturn(0); 23064dc2109aSBarry Smith } 23074dc2109aSBarry Smith 2308bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 23092f18eb33SBarry Smith 23102f18eb33SBarry Smith /*@C 23112f18eb33SBarry Smith 23122f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 23132f18eb33SBarry Smith 23142f18eb33SBarry Smith Not Collective 23152f18eb33SBarry Smith 23162f18eb33SBarry Smith Input Parameter: 23172f18eb33SBarry Smith + a - the PetscReal value 23182f18eb33SBarry Smith - b - the second value 23192f18eb33SBarry Smith 2320390e1bf2SBarry Smith Returns: 2321390e1bf2SBarry Smith the result as a PetscInt value 23222f18eb33SBarry Smith 2323bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23242f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23252f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23262f18eb33SBarry Smith 2327e28ce29aSPatrick Sanan Developers Note: 2328e28ce29aSPatrick Sanan We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23292f18eb33SBarry Smith 23302f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23312f18eb33SBarry Smith 23321fd49c25SBarry Smith Not available from Fortran 23331fd49c25SBarry Smith 23342f18eb33SBarry Smith Level: advanced 23352f18eb33SBarry Smith 2336390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23372f18eb33SBarry Smith @*/ 23382f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23392f18eb33SBarry Smith { 2340bafee8b4SSatish Balay PetscInt64 r; 23412f18eb33SBarry Smith 2342bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23432f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23442f18eb33SBarry Smith return (PetscInt) r; 23452f18eb33SBarry Smith } 23462f18eb33SBarry Smith 23472f18eb33SBarry Smith /*@C 23482f18eb33SBarry Smith 23492f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23502f18eb33SBarry Smith 23512f18eb33SBarry Smith Not Collective 23522f18eb33SBarry Smith 23532f18eb33SBarry Smith Input Parameter: 23542f18eb33SBarry Smith + a - the PetscInt value 23552f18eb33SBarry Smith - b - the second value 23562f18eb33SBarry Smith 2357390e1bf2SBarry Smith Returns: 2358390e1bf2SBarry Smith the result as a PetscInt value 23592f18eb33SBarry Smith 2360bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23612f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23622f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23632f18eb33SBarry Smith 23641fd49c25SBarry Smith Not available from Fortran 23651fd49c25SBarry Smith 23662f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23672f18eb33SBarry Smith 23682f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23692f18eb33SBarry Smith 23702f18eb33SBarry Smith Level: advanced 23712f18eb33SBarry Smith 2372390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23732f18eb33SBarry Smith @*/ 23742f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23752f18eb33SBarry Smith { 2376bafee8b4SSatish Balay PetscInt64 r; 23772f18eb33SBarry Smith 2378bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23792f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23802f18eb33SBarry Smith return (PetscInt) r; 23812f18eb33SBarry Smith } 23822f18eb33SBarry Smith 2383f91af8c7SBarry Smith /*@C 2384f91af8c7SBarry Smith 2385f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2386f91af8c7SBarry Smith 2387f91af8c7SBarry Smith Not Collective 2388f91af8c7SBarry Smith 2389f91af8c7SBarry Smith Input Parameter: 2390f91af8c7SBarry Smith + a - the PetscInt value 2391f91af8c7SBarry Smith - b - the second value 2392f91af8c7SBarry Smith 2393390e1bf2SBarry Smith Returns: 2394390e1bf2SBarry Smith the result as a PetscInt value 2395f91af8c7SBarry Smith 2396bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2397f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2398f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2399f91af8c7SBarry Smith 2400f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2401f91af8c7SBarry Smith 2402f5f57ec0SBarry Smith Not available from Fortran 2403f5f57ec0SBarry Smith 2404f91af8c7SBarry Smith Level: advanced 2405f91af8c7SBarry Smith 2406390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2407f91af8c7SBarry Smith @*/ 2408f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2409f91af8c7SBarry Smith { 2410bafee8b4SSatish Balay PetscInt64 r; 2411f91af8c7SBarry Smith 2412bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2413f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2414f91af8c7SBarry Smith return (PetscInt) r; 2415f91af8c7SBarry Smith } 2416f91af8c7SBarry Smith 24172f18eb33SBarry Smith /*@C 24182f18eb33SBarry Smith 24192f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 24202f18eb33SBarry Smith 24212f18eb33SBarry Smith Not Collective 24222f18eb33SBarry Smith 24232f18eb33SBarry Smith Input Parameter: 24242f18eb33SBarry Smith + a - the PetscInt value 24252f18eb33SBarry Smith - b - the second value 24262f18eb33SBarry Smith 24272f18eb33SBarry Smith Output Parameter:ma 2428390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24292f18eb33SBarry Smith 2430bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24312f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24322f18eb33SBarry Smith 2433f5f57ec0SBarry Smith Not available from Fortran 2434f5f57ec0SBarry Smith 2435220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24362f18eb33SBarry Smith 24372f18eb33SBarry Smith Level: advanced 24382f18eb33SBarry Smith 2439220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 24402f18eb33SBarry Smith @*/ 24412f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24422f18eb33SBarry Smith { 2443bafee8b4SSatish Balay PetscInt64 r; 24442f18eb33SBarry Smith 24452f18eb33SBarry Smith PetscFunctionBegin; 2446bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24472f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24482f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24492f18eb33SBarry Smith #endif 2450f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2451f91af8c7SBarry Smith PetscFunctionReturn(0); 2452f91af8c7SBarry Smith } 2453f91af8c7SBarry Smith 2454f91af8c7SBarry Smith /*@C 2455f91af8c7SBarry Smith 2456fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2457f91af8c7SBarry Smith 2458f91af8c7SBarry Smith Not Collective 2459f91af8c7SBarry Smith 2460f91af8c7SBarry Smith Input Parameter: 2461f91af8c7SBarry Smith + a - the PetscInt value 2462f91af8c7SBarry Smith - b - the second value 2463f91af8c7SBarry Smith 2464f91af8c7SBarry Smith Output Parameter:ma 2465390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2466f91af8c7SBarry Smith 2467bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2468f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2469f91af8c7SBarry Smith 2470f5f57ec0SBarry Smith Not available from Fortran 2471f5f57ec0SBarry Smith 2472f91af8c7SBarry Smith Level: advanced 2473f91af8c7SBarry Smith 2474390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2475f91af8c7SBarry Smith @*/ 2476f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2477f91af8c7SBarry Smith { 2478bafee8b4SSatish Balay PetscInt64 r; 2479f91af8c7SBarry Smith 2480f91af8c7SBarry Smith PetscFunctionBegin; 2481bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2482f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2483f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2484f91af8c7SBarry Smith #endif 2485f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24862f18eb33SBarry Smith PetscFunctionReturn(0); 24872f18eb33SBarry Smith } 2488c5df96a5SBarry Smith 2489d382aafbSBarry Smith /* 24902981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2491d382aafbSBarry Smith */ 2492d382aafbSBarry Smith #if defined(hz) 2493d382aafbSBarry Smith #undef hz 2494d382aafbSBarry Smith #endif 2495d382aafbSBarry Smith 2496d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2497d382aafbSBarry Smith 2498d382aafbSBarry Smith 2499d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2500d382aafbSBarry Smith #include <limits.h> 2501d382aafbSBarry Smith #endif 2502d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2503d382aafbSBarry Smith #include <sys/param.h> 2504d382aafbSBarry Smith #endif 2505d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2506d382aafbSBarry Smith #include <sys/types.h> 2507d382aafbSBarry Smith #endif 2508d382aafbSBarry Smith #if defined(MAXPATHLEN) 2509d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2510d382aafbSBarry Smith #elif defined(MAX_PATH) 2511d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2512d382aafbSBarry Smith #elif defined(_MAX_PATH) 2513d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2514d382aafbSBarry Smith #else 2515d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2516d382aafbSBarry Smith #endif 2517d382aafbSBarry Smith 2518d382aafbSBarry Smith /*MC 2519d382aafbSBarry Smith 252066d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 252166d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 252266d79e26SBarry Smith 252366d79e26SBarry Smith 252466d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 252566d79e26SBarry Smith 252666d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 252766d79e26SBarry Smith 252866d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 252966d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 253066d79e26SBarry Smith 253166d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 253266d79e26SBarry Smith 253366d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 253466d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 253566d79e26SBarry Smith version number (x.y.z). 253666d79e26SBarry Smith 253766d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 253866d79e26SBarry Smith 253966d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 254066d79e26SBarry Smith 254166d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 254266d79e26SBarry Smith 254366d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 254466d79e26SBarry Smith 254566d79e26SBarry Smith Level: intermediate 254666d79e26SBarry Smith 254766d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 254866d79e26SBarry Smith 254966d79e26SBarry Smith M*/ 255066d79e26SBarry Smith 255166d79e26SBarry Smith /*MC 255266d79e26SBarry Smith 25531b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 25541b266c99SBarry Smith of every function and module definition you need something like 2555d382aafbSBarry Smith 2556d382aafbSBarry Smith $ 2557af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 25580f665fc7SPatrick Sanan $ use petscXXX 25591b266c99SBarry Smith 2560692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 25611b266c99SBarry Smith 2562d382aafbSBarry Smith $ XXX variablename 25631b266c99SBarry Smith $ type(tXXX) variablename 25641b266c99SBarry Smith 2565692afcd8SPatrick Sanan For example, 25661b266c99SBarry Smith 2567bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 25681b266c99SBarry Smith $ use petscvec 2569d382aafbSBarry Smith $ 2570692afcd8SPatrick Sanan $ Vec b 2571692afcd8SPatrick Sanan $ type(tVec) x 2572d382aafbSBarry Smith 2573d382aafbSBarry Smith Level: beginner 2574d382aafbSBarry Smith 2575d382aafbSBarry Smith M*/ 2576d382aafbSBarry Smith 2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 258327710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25845f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2585d382aafbSBarry Smith 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 258722ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 258960e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2590d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25946c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 259517d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 259617d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 259917df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 260139f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2603745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 260439f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 26086c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 26096c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2610e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2611d382aafbSBarry Smith 2612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2614d382aafbSBarry Smith 261576bdecfbSBarry Smith /*J 2616d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2617d382aafbSBarry Smith 2618d382aafbSBarry Smith Level: beginner 2619d382aafbSBarry Smith 2620e28ce29aSPatrick Sanan Notes: 2621e28ce29aSPatrick Sanan To use SPRNG or RANDOM123 you must have ./configure PETSc 262225ccb61fSToby Isaac with the option --download-sprng or --download-random123 2623d382aafbSBarry Smith 26248f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 262576bdecfbSBarry Smith J*/ 262619fd82e9SBarry Smith typedef const char* PetscRandomType; 2627d382aafbSBarry Smith #define PETSCRAND "rand" 2628d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2629d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2630c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 263125ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2632d382aafbSBarry Smith 2633d382aafbSBarry Smith /* Logging support */ 2634014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2635d382aafbSBarry Smith 2636607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2637d382aafbSBarry Smith 2638d382aafbSBarry Smith /*S 2639d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2640d382aafbSBarry Smith 2641d382aafbSBarry Smith Level: intermediate 2642d382aafbSBarry Smith 2643d382aafbSBarry Smith Concepts: random numbers 2644d382aafbSBarry Smith 2645d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2646d382aafbSBarry Smith S*/ 2647d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2648d382aafbSBarry Smith 2649d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2650140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2651d382aafbSBarry Smith 2652bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 265319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 265519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2656685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2658d382aafbSBarry Smith 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2668d382aafbSBarry Smith 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 267697540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 267797540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2678d382aafbSBarry Smith 2679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2682014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2687014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2688014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2689014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2690c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2691e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2692c891a504SStefano Zampini #endif 2693d382aafbSBarry Smith 2694d382aafbSBarry Smith /* 2695d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2696d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2697d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2698d382aafbSBarry Smith PetscBinarySeek(). 2699d382aafbSBarry Smith */ 2700d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2701d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2702d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2703d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2704d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2705d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2706d382aafbSBarry Smith 2707d382aafbSBarry Smith /*E 2708d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2709d382aafbSBarry Smith 2710d382aafbSBarry Smith Level: advanced 2711d382aafbSBarry Smith 2712d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2713d382aafbSBarry Smith E*/ 2714d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2715014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2716014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2717014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2718d382aafbSBarry Smith 2719014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2720014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2721014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2722014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2723014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2724014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2725d382aafbSBarry Smith 2726014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2727014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2728014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2729014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2730014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2731cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2732cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2733d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2734d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2735d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2736d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27376afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27386afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27396afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27406afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27416afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2742d382aafbSBarry Smith 27436145cd65SJed Brown /*E 27446145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27456145cd65SJed Brown 27466145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27476145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27486145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27496145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27506145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27511654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27521654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27536145cd65SJed Brown 27546145cd65SJed Brown Level: developer 27556145cd65SJed Brown 27566145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27576145cd65SJed Brown E*/ 27586145cd65SJed Brown typedef enum { 27596145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27606145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27611654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 276212af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27636145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27646145cd65SJed Brown } PetscBuildTwoSidedType; 27656145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27666145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27676145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27686145cd65SJed Brown 2769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2770d382aafbSBarry Smith 2771d382aafbSBarry Smith /*E 2772d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2773d382aafbSBarry Smith 2774d382aafbSBarry Smith Level: beginner 2775d382aafbSBarry Smith 2776d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2777d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2778d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2779d382aafbSBarry Smith E*/ 27806fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2781d382aafbSBarry Smith 2782d382aafbSBarry Smith /*MC 2783d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2784d382aafbSBarry Smith 2785d382aafbSBarry Smith Level: beginner 2786d382aafbSBarry Smith 2787d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2788eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2789eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2790d382aafbSBarry Smith 2791d382aafbSBarry Smith M*/ 2792d382aafbSBarry Smith 2793d382aafbSBarry Smith /*MC 2794d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2795d382aafbSBarry Smith value into that location 2796d382aafbSBarry Smith 2797d382aafbSBarry Smith Level: beginner 2798d382aafbSBarry Smith 2799d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2800eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2801eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2802d382aafbSBarry Smith 2803d382aafbSBarry Smith M*/ 2804d382aafbSBarry Smith 2805d382aafbSBarry Smith /*MC 2806d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2807d382aafbSBarry Smith 2808d382aafbSBarry Smith Level: beginner 2809d382aafbSBarry Smith 2810d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2811d382aafbSBarry Smith 2812d382aafbSBarry Smith M*/ 2813d382aafbSBarry Smith 2814ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2815ce94432eSBarry Smith 281645487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 281745487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 281845487dadSJed Brown 2819d382aafbSBarry Smith /*S 2820306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2821306c2d5bSBarry Smith 2822e28ce29aSPatrick Sanan Notes: 2823e28ce29aSPatrick Sanan After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2824306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 28253bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2826306c2d5bSBarry Smith 2827306c2d5bSBarry Smith Sample Usage: 2828306c2d5bSBarry Smith PetscSubcommCreate() 2829306c2d5bSBarry Smith PetscSubcommSetNumber() 2830306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2831306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2832306c2d5bSBarry Smith PetscSubcommDestroy() 2833d382aafbSBarry Smith 2834d382aafbSBarry Smith Level: advanced 2835d382aafbSBarry Smith 2836d382aafbSBarry Smith Concepts: communicator, create 2837306c2d5bSBarry Smith 2838306c2d5bSBarry Smith Notes: 2839306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 28403bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2841306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2842306c2d5bSBarry Smith 2843e28ce29aSPatrick Sanan Example: Consider a communicator with six processes split into 3 subcommunicators. 2844306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2845306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2846306c2d5bSBarry Smith 2847e28ce29aSPatrick Sanan Developer Notes: 2848e28ce29aSPatrick Sanan This is used in objects such as PCREDUNDANT to manage the subcommunicators on which the redundant computations 2849306c2d5bSBarry Smith are performed. 2850306c2d5bSBarry Smith 2851306c2d5bSBarry Smith 2852306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2853306c2d5bSBarry Smith 2854d382aafbSBarry Smith S*/ 2855d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2856d382aafbSBarry Smith 2857d382aafbSBarry Smith struct _n_PetscSubcomm { 2858d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2859d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2860306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 286145487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 286245487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2863708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 286445487dadSJed Brown PetscSubcommType type; 2865e5acf8a4SHong Zhang char *subcommprefix; 2866d382aafbSBarry Smith }; 2867d382aafbSBarry Smith 2868c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2869306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 287036be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2871014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2872014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2873014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2874014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 287565d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2876053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2877f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2878e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2879d382aafbSBarry Smith 28800f453b92SJed Brown /*S 28819962606eSBarry Smith PetscHeap - A simple class for managing heaps 28829962606eSBarry Smith 28839962606eSBarry Smith Level: intermediate 28849962606eSBarry Smith 28859962606eSBarry Smith Concepts: random numbers 28869962606eSBarry Smith 28879962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 28889962606eSBarry Smith S*/ 28899962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 28909962606eSBarry Smith 28919962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 28929962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 28939962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 28949962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 28959962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 28969962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 28979962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 28989962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 28999962606eSBarry Smith 29005e71baefSBarry Smith PETSC_EXTERN PetscErrorCode PetscProcessPlacementView(PetscViewer); 290142218b76SBarry Smith typedef struct _n_PetscCommShared* PetscCommShared; 290242218b76SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGet(MPI_Comm,PetscCommShared*); 29034e73f77fSBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGlobalToLocal(PetscCommShared,PetscMPIInt,PetscMPIInt*); 2904ee655a11SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGetComm(PetscCommShared,MPI_Comm*); 29055e71baefSBarry Smith 29069962606eSBarry Smith /*S 29070f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 29080f453b92SJed Brown 29090f453b92SJed Brown Level: developer 29100f453b92SJed Brown 29110f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 29120f453b92SJed Brown S*/ 29130f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 291413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 29150f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 291613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2917137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2918137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2919137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 292013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 292113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 29220f453b92SJed Brown 29235e71baefSBarry Smith 2924471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2925471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2926471ecdacSJed Brown * possible. */ 292735005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2928d382aafbSBarry Smith 29299de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 29309de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 29319de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 29329de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 29339de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 29349de0f6ecSBarry Smith 2935268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2936fbfcfee5SBarry Smith 29371f817a21SBarry Smith /*@C 29381f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 29391f817a21SBarry Smith 29401f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 29411f817a21SBarry Smith 29421f817a21SBarry Smith Input Parameters: 29431f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 29441f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 29451f817a21SBarry Smith 2946850545d0SSatish Balay Level: intermediate 2947850545d0SSatish Balay 2948f5f57ec0SBarry Smith Not available from Fortran 2949f5f57ec0SBarry Smith 29501f817a21SBarry Smith Options Database: 2951063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 29521f817a21SBarry Smith @*/ 2953dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2954dff31646SBarry Smith { 2955dff31646SBarry Smith size_t len; 2956dff31646SBarry Smith char *vstring; 2957dff31646SBarry Smith PetscErrorCode ierr; 2958dff31646SBarry Smith 29591f817a21SBarry Smith PetscFunctionBegin; 29608d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2961dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 296235005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2963dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2964dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29651f817a21SBarry Smith PetscFunctionReturn(0); 2966dff31646SBarry Smith } 2967dff31646SBarry Smith 2968b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2969fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2970fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2971f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2972fe278a28SBarry Smith 2973f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2974f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2975b967cddfSBarry Smith 29769f4d3c52SBarry Smith PETSC_EXTERN PetscErrorCode PetscGlobusGetTransfers(MPI_Comm,const char[],char[],size_t); 29779f4d3c52SBarry Smith 297804102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2979763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2980dff31646SBarry Smith 298168e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29825dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2983d382aafbSBarry Smith 2984b2566f29SBarry Smith 2985b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2986b2566f29SBarry Smith /* 2987b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2988b2566f29SBarry Smith */ 29898f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 299077a5e07dSBarry Smith 299177a5e07dSBarry Smith /*MC 299277a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 299377a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 299477a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 299577a5e07dSBarry Smith 299677a5e07dSBarry Smith Collective on MPI_Comm 299777a5e07dSBarry Smith 299877a5e07dSBarry Smith Synopsis: 299977a5e07dSBarry Smith #include <petscsys.h> 300077a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 300177a5e07dSBarry Smith 300277a5e07dSBarry Smith Input Parameters: 300377a5e07dSBarry Smith + indata - pointer to the input data to be reduced 300477a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 300577a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 300677a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 300777a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 300877a5e07dSBarry Smith 300977a5e07dSBarry Smith Output Parameter: 301077a5e07dSBarry Smith . outdata - the reduced values 301177a5e07dSBarry Smith 3012e28ce29aSPatrick Sanan Notes: 3013e28ce29aSPatrick Sanan In optimized mode this directly calls MPI_Allreduce() 301477a5e07dSBarry Smith 301577a5e07dSBarry Smith Level: developer 301677a5e07dSBarry Smith 301777a5e07dSBarry Smith .seealso: MPI_Allreduce() 301877a5e07dSBarry Smith M*/ 3019fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 3020b2566f29SBarry Smith #else 3021b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 3022b2566f29SBarry Smith #endif 3023b2566f29SBarry Smith 302412801b39SBarry Smith /* 302512801b39SBarry Smith Returned from PETSc functions that are called from MPI, such as related to attributes 302612801b39SBarry Smith */ 302712801b39SBarry Smith PETSC_EXTERN PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 302812801b39SBarry Smith 3029d382aafbSBarry Smith #endif 3030