1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 14d382aafbSBarry Smith #include "petscconf.h" 15d382aafbSBarry Smith #include "petscfix.h" 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2873fca5a0SBarry Smith #endif 2973fca5a0SBarry Smith 30d382aafbSBarry Smith /* ========================================================================== */ 31d382aafbSBarry Smith /* 322981ebdbSBarry Smith This facilitates using the C version of PETSc from C++ and the 33e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 34d382aafbSBarry Smith */ 35d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 36d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 37d382aafbSBarry Smith #endif 381ec50b02SJed Brown 391ec50b02SJed Brown #if defined(__cplusplus) 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 411ec50b02SJed Brown #else 421ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 431ec50b02SJed Brown #endif 44d382aafbSBarry Smith 45d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 46da861ed6SJed Brown #define PETSC_EXTERN extern "C" 47d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 48d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 49d382aafbSBarry Smith #else 50da861ed6SJed Brown #define PETSC_EXTERN extern 51d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 52d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 53d382aafbSBarry Smith #endif 54d382aafbSBarry Smith /* ========================================================================== */ 55d382aafbSBarry Smith /* 56d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 57d382aafbSBarry Smith Web page 58d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 59d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 60d382aafbSBarry Smith src/docs/website/index.html. 61d382aafbSBarry Smith */ 62d382aafbSBarry Smith #include "petscversion.h" 63301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 64d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 65301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 66d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 67301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 68d382aafbSBarry Smith #else 69301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 70301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 71d382aafbSBarry Smith #endif 72d382aafbSBarry Smith 73d382aafbSBarry Smith /*MC 74d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 75d382aafbSBarry Smith 76d382aafbSBarry Smith Input Parameter: 77d382aafbSBarry Smith . len - length of the string 78d382aafbSBarry Smith 79d382aafbSBarry Smith Output Parameter: 80d382aafbSBarry Smith . version - version string 81d382aafbSBarry Smith 82d382aafbSBarry Smith Level: developer 83d382aafbSBarry Smith 84d382aafbSBarry Smith Usage: 85d382aafbSBarry Smith char version[256]; 86d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 87d382aafbSBarry Smith 88d382aafbSBarry Smith Fortran Note: 89d382aafbSBarry Smith This routine is not supported in Fortran. 90d382aafbSBarry Smith 91d382aafbSBarry Smith .seealso: PetscGetProgramName() 92d382aafbSBarry Smith 93d382aafbSBarry Smith M*/ 94d382aafbSBarry Smith 95d382aafbSBarry Smith /* ========================================================================== */ 96d382aafbSBarry Smith 97d382aafbSBarry Smith /* 98d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 99d382aafbSBarry Smith 100d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 101d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 102d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 103d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 104d382aafbSBarry Smith mpicxx.h directly in their code 105d382aafbSBarry Smith */ 106d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 107d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 108d382aafbSBarry Smith #include "mpi.h" 10965013866SBarry Smith 110d382aafbSBarry Smith /* 1112981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 112d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 113d382aafbSBarry Smith */ 114d382aafbSBarry Smith #include <stdio.h> 115d382aafbSBarry Smith 116d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 117d382aafbSBarry Smith #if !defined(MPIAPI) 118d382aafbSBarry Smith #define MPIAPI 119d382aafbSBarry Smith #endif 120d382aafbSBarry Smith 121b3506946SBarry Smith 122d382aafbSBarry Smith /*MC 123d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 124d382aafbSBarry Smith 125d382aafbSBarry Smith Level: beginner 126d382aafbSBarry Smith 127d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 128d382aafbSBarry Smith M*/ 129d382aafbSBarry Smith typedef int PetscErrorCode; 130d382aafbSBarry Smith 131d382aafbSBarry Smith /*MC 132d382aafbSBarry Smith 133503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 134d382aafbSBarry Smith (internal integer in the data structure used for error 1352981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1360700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 137d382aafbSBarry Smith 138d382aafbSBarry Smith Level: advanced 139d382aafbSBarry Smith 1400700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 141d382aafbSBarry Smith M*/ 1420700a824SBarry Smith typedef int PetscClassId; 143d382aafbSBarry Smith 144d382aafbSBarry Smith 145d382aafbSBarry Smith /*MC 146d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 147d382aafbSBarry Smith 148d382aafbSBarry Smith Level: intermediate 149d382aafbSBarry Smith 150d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1513b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 152d382aafbSBarry Smith 1533b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 1542981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 155d382aafbSBarry Smith 1563b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1572981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 158d382aafbSBarry Smith 159d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 160d382aafbSBarry Smith 161d382aafbSBarry Smith M*/ 162d382aafbSBarry Smith typedef int PetscMPIInt; 163d382aafbSBarry Smith 164d382aafbSBarry Smith /*MC 165d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 166d382aafbSBarry Smith 167d382aafbSBarry Smith Level: intermediate 168d382aafbSBarry Smith 169d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 170d382aafbSBarry Smith M*/ 171d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 172d382aafbSBarry Smith 173d382aafbSBarry Smith /*MC 174d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1753b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 176d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 177d382aafbSBarry Smith 178d382aafbSBarry Smith Level: intermediate 179d382aafbSBarry Smith 180d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 181d382aafbSBarry Smith M*/ 182f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 183f505b413SSatish Balay typedef long long Petsc64bitInt; 184f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 185236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 186236ed0a3SSatish Balay #else 187f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 188236ed0a3SSatish Balay #endif 189d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 190236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 191d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 192d382aafbSBarry Smith #else 193d382aafbSBarry Smith typedef int PetscInt; 194d382aafbSBarry Smith #define MPIU_INT MPI_INT 195d382aafbSBarry Smith #endif 196236ed0a3SSatish Balay 197d382aafbSBarry Smith 198702bc34aSSatish Balay /*MC 199702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 200702bc34aSSatish Balay 201702bc34aSSatish Balay Level: intermediate 202702bc34aSSatish Balay 203702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 204702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 205702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 206702bc34aSSatish Balay 207702bc34aSSatish Balay PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 2082981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 209702bc34aSSatish Balay 210702bc34aSSatish Balay PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2112981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 212702bc34aSSatish Balay 2132981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 214702bc34aSSatish Balay if you run ./configure with the option 215702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2162981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2172981ebdbSBarry Smith 2182981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2192981ebdbSBarry Smith 2202981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 221702bc34aSSatish Balay 222702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 223702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 224702bc34aSSatish Balay 225702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 226702bc34aSSatish Balay 227702bc34aSSatish Balay M*/ 228702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 229702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 230702bc34aSSatish Balay #else 231702bc34aSSatish Balay typedef int PetscBLASInt; 232702bc34aSSatish Balay #endif 233702bc34aSSatish Balay 23458b60935SBarry Smith /*EC 23558b60935SBarry Smith 2362981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 23758b60935SBarry Smith 23858b60935SBarry Smith Level: advanced 23958b60935SBarry Smith 24058b60935SBarry Smith .seealso: PetscObjectSetPrecision() 24158b60935SBarry Smith E*/ 24258b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 24358b60935SBarry Smith extern const char *PetscPrecisions[]; 24458b60935SBarry Smith 245503cfb0cSBarry Smith /* 246503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 247503cfb0cSBarry Smith */ 248d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 249d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 250d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 251d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 252d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 253d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 254d382aafbSBarry Smith #else 255d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 256d382aafbSBarry Smith #endif 257d382aafbSBarry Smith 258d382aafbSBarry Smith 259d382aafbSBarry Smith /* 260d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 261d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 262d382aafbSBarry Smith */ 263d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 264d382aafbSBarry Smith 265d382aafbSBarry Smith /* 266d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 267d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 268d382aafbSBarry Smith */ 269d382aafbSBarry Smith extern FILE* PETSC_STDERR; 270d382aafbSBarry Smith 271d382aafbSBarry Smith /*MC 272d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 273d382aafbSBarry Smith 274d382aafbSBarry Smith Synopsis: 275ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 276d382aafbSBarry Smith 277eca87e8dSBarry Smith Not Collective 278eca87e8dSBarry Smith 279d382aafbSBarry Smith Input Parameters: 280d382aafbSBarry Smith . cond - condition or expression 281d382aafbSBarry Smith 282d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 283d382aafbSBarry Smith branch is unlikely. 284d382aafbSBarry Smith 285d382aafbSBarry Smith Level: advanced 286d382aafbSBarry Smith 287d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 288d382aafbSBarry Smith M*/ 289d382aafbSBarry Smith 290d382aafbSBarry Smith /*MC 291d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 292d382aafbSBarry Smith 293d382aafbSBarry Smith Synopsis: 294ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 295d382aafbSBarry Smith 296eca87e8dSBarry Smith Not Collective 297eca87e8dSBarry Smith 298d382aafbSBarry Smith Input Parameters: 299d382aafbSBarry Smith . cond - condition or expression 300d382aafbSBarry Smith 301d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 302d382aafbSBarry Smith branch is likely. 303d382aafbSBarry Smith 304d382aafbSBarry Smith Level: advanced 305d382aafbSBarry Smith 306d382aafbSBarry Smith .seealso: PetscUnlikely() 307d382aafbSBarry Smith M*/ 308d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 309d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 310d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 311d382aafbSBarry Smith #else 312cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 313cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 314d382aafbSBarry Smith #endif 315d382aafbSBarry Smith 316d382aafbSBarry Smith /* 317d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 318d382aafbSBarry Smith */ 319d382aafbSBarry Smith #include "petscmath.h" 320d382aafbSBarry Smith 321d382aafbSBarry Smith /* 322d382aafbSBarry Smith Declare extern C stuff after including external header files 323d382aafbSBarry Smith */ 324d382aafbSBarry Smith 325d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 326d382aafbSBarry Smith 327d382aafbSBarry Smith /* 328d382aafbSBarry Smith Basic PETSc constants 329d382aafbSBarry Smith */ 330d382aafbSBarry Smith 331d382aafbSBarry Smith /*E 332ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 333d382aafbSBarry Smith 334d382aafbSBarry Smith Level: beginner 335d382aafbSBarry Smith 336ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 33734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 33834e82e7dSBarry Smith 339d382aafbSBarry Smith E*/ 340ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 341ace3abfcSBarry Smith extern const char *PetscBools[]; 34270b3c8c7SBarry Smith 34370b3c8c7SBarry Smith /*E 34470b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 34570b3c8c7SBarry Smith 34670b3c8c7SBarry Smith Level: beginner 34770b3c8c7SBarry Smith 34870b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 34970b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 35070b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 35170b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 35270b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 35370b3c8c7SBarry Smith 35470b3c8c7SBarry Smith E*/ 35570b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 35670b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 357d382aafbSBarry Smith 358d382aafbSBarry Smith /*MC 359ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 360d382aafbSBarry Smith 361d382aafbSBarry Smith Level: beginner 362d382aafbSBarry Smith 363d382aafbSBarry Smith Note: Zero integer 364d382aafbSBarry Smith 365ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 366d382aafbSBarry Smith M*/ 367d382aafbSBarry Smith 368d382aafbSBarry Smith /*MC 369ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 370d382aafbSBarry Smith 371d382aafbSBarry Smith Level: beginner 372d382aafbSBarry Smith 373d382aafbSBarry Smith Note: Nonzero integer 374d382aafbSBarry Smith 375ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 376d382aafbSBarry Smith M*/ 377d382aafbSBarry Smith 378d382aafbSBarry Smith /*MC 379d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 380d382aafbSBarry Smith 381d382aafbSBarry Smith Level: beginner 382d382aafbSBarry Smith 383d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 384d382aafbSBarry Smith some default 385d382aafbSBarry Smith 386d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 387503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 388d382aafbSBarry Smith 38934e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 39034e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 39134e82e7dSBarry Smith 392d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 393d382aafbSBarry Smith 394d382aafbSBarry Smith M*/ 395d382aafbSBarry Smith #define PETSC_NULL 0 396d382aafbSBarry Smith 397d382aafbSBarry Smith /*MC 398d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 399d382aafbSBarry Smith 400d382aafbSBarry Smith Level: beginner 401d382aafbSBarry Smith 402d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 403d382aafbSBarry Smith some default 404d382aafbSBarry Smith 405d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 406d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 407d382aafbSBarry Smith 408d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 409d382aafbSBarry Smith 410d382aafbSBarry Smith M*/ 411d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 412d382aafbSBarry Smith 413d382aafbSBarry Smith /*MC 414557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 415557d4da8SBarry Smith where you wish PETSc to use the default. 416557d4da8SBarry Smith 417557d4da8SBarry Smith Level: beginner 418557d4da8SBarry Smith 419557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 420557d4da8SBarry Smith 421557d4da8SBarry Smith M*/ 422557d4da8SBarry Smith #define PETSC_DECIDE -1 423557d4da8SBarry Smith 424557d4da8SBarry Smith /*MC 425d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 426d382aafbSBarry Smith where you wish PETSc to compute the required value. 427d382aafbSBarry Smith 428d382aafbSBarry Smith Level: beginner 429d382aafbSBarry Smith 430557d4da8SBarry Smith 431557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 432557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 433557d4da8SBarry Smith 434d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 435d382aafbSBarry Smith 436d382aafbSBarry Smith M*/ 437d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 438d382aafbSBarry Smith 439d382aafbSBarry Smith /*MC 440557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 441557d4da8SBarry Smith where you wish PETSc to use the default. 442557d4da8SBarry Smith 443557d4da8SBarry Smith Level: beginner 444557d4da8SBarry Smith 445557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 446557d4da8SBarry Smith 447557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 448557d4da8SBarry Smith 449557d4da8SBarry Smith M*/ 450557d4da8SBarry Smith #define PETSC_DEFAULT -2 451557d4da8SBarry Smith 452557d4da8SBarry Smith /*MC 453d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 454d382aafbSBarry Smith all the processs that PETSc knows about. 455d382aafbSBarry Smith 456d382aafbSBarry Smith Level: beginner 457d382aafbSBarry Smith 458d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 459d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 460d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 461d382aafbSBarry Smith PetscInitialize() 462d382aafbSBarry Smith 463d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 464d382aafbSBarry Smith 465d382aafbSBarry Smith M*/ 466d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 467d382aafbSBarry Smith 468d382aafbSBarry Smith /*MC 469503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 470d382aafbSBarry Smith 471d382aafbSBarry Smith Level: beginner 472d382aafbSBarry Smith 473d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 474d382aafbSBarry Smith 475d382aafbSBarry Smith M*/ 476d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 477d382aafbSBarry Smith 4787087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 4797087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 4808b5db460SBarry Smith extern PetscBool PetscCUSPSynchronize; 481d382aafbSBarry Smith 4827087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 4837087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 4847087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 485d382aafbSBarry Smith 486d382aafbSBarry Smith /*MC 487d382aafbSBarry Smith PetscMalloc - Allocates memory 488d382aafbSBarry Smith 489eca87e8dSBarry Smith Synopsis: 490eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 491eca87e8dSBarry Smith 492eca87e8dSBarry Smith Not Collective 493eca87e8dSBarry Smith 494d382aafbSBarry Smith Input Parameter: 495d382aafbSBarry Smith . m - number of bytes to allocate 496d382aafbSBarry Smith 497d382aafbSBarry Smith Output Parameter: 498d382aafbSBarry Smith . result - memory allocated 499d382aafbSBarry Smith 500d382aafbSBarry Smith Level: beginner 501d382aafbSBarry Smith 502d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 503d382aafbSBarry Smith 504d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 505d382aafbSBarry Smith properly handle not freeing the null pointer. 506d382aafbSBarry Smith 507d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 508d382aafbSBarry Smith 509d382aafbSBarry Smith Concepts: memory allocation 510d382aafbSBarry Smith 511d382aafbSBarry Smith M*/ 5122714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 513d382aafbSBarry Smith 514d382aafbSBarry Smith /*MC 515503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 516d382aafbSBarry Smith 517d382aafbSBarry Smith Synopsis: 518d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 519d382aafbSBarry Smith 520eca87e8dSBarry Smith Not Collective 521eca87e8dSBarry Smith 522eca87e8dSBarry Smith Input Parameters: 523eca87e8dSBarry Smith . addr - address to align (any pointer type) 524eca87e8dSBarry Smith 525d382aafbSBarry Smith Level: developer 526d382aafbSBarry Smith 527d382aafbSBarry Smith .seealso: PetscMallocAlign() 528d382aafbSBarry Smith 529d382aafbSBarry Smith Concepts: memory allocation 530d382aafbSBarry Smith M*/ 531d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 532d382aafbSBarry Smith 533d382aafbSBarry Smith /*MC 534503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 535d382aafbSBarry Smith 536eca87e8dSBarry Smith Synopsis: 537eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 538eca87e8dSBarry Smith 539eca87e8dSBarry Smith Not Collective 540eca87e8dSBarry Smith 541d382aafbSBarry Smith Input Parameter: 542d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 543d382aafbSBarry Smith . t1 - type of first memory elements 544d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 545d382aafbSBarry Smith - t2 - type of second memory elements 546d382aafbSBarry Smith 547d382aafbSBarry Smith Output Parameter: 548d382aafbSBarry Smith + r1 - memory allocated in first chunk 549d382aafbSBarry Smith - r2 - memory allocated in second chunk 550d382aafbSBarry Smith 551d382aafbSBarry Smith Level: developer 552d382aafbSBarry Smith 553d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 554d382aafbSBarry Smith 555d382aafbSBarry Smith Concepts: memory allocation 556d382aafbSBarry Smith 557d382aafbSBarry Smith M*/ 558d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 559d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 560d382aafbSBarry Smith #else 5612981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 562d382aafbSBarry Smith #endif 563d382aafbSBarry Smith 564d382aafbSBarry Smith /*MC 565503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 566d382aafbSBarry Smith 567eca87e8dSBarry Smith Synopsis: 568eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 569eca87e8dSBarry Smith 570eca87e8dSBarry Smith Not Collective 571eca87e8dSBarry Smith 572d382aafbSBarry Smith Input Parameter: 573d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 574d382aafbSBarry Smith . t1 - type of first memory elements 575d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 576d382aafbSBarry Smith . t2 - type of second memory elements 577d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 578d382aafbSBarry Smith - t3 - type of third memory elements 579d382aafbSBarry Smith 580d382aafbSBarry Smith Output Parameter: 581d382aafbSBarry Smith + r1 - memory allocated in first chunk 582d382aafbSBarry Smith . r2 - memory allocated in second chunk 583d382aafbSBarry Smith - r3 - memory allocated in third chunk 584d382aafbSBarry Smith 585d382aafbSBarry Smith Level: developer 586d382aafbSBarry Smith 587d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 588d382aafbSBarry Smith 589d382aafbSBarry Smith Concepts: memory allocation 590d382aafbSBarry Smith 591d382aafbSBarry Smith M*/ 592d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 593d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 594d382aafbSBarry Smith #else 5953b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 596d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 597d382aafbSBarry Smith #endif 598d382aafbSBarry Smith 599d382aafbSBarry Smith /*MC 600503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 601d382aafbSBarry Smith 602eca87e8dSBarry Smith Synopsis: 603eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 604eca87e8dSBarry Smith 605eca87e8dSBarry Smith Not Collective 606eca87e8dSBarry Smith 607d382aafbSBarry Smith Input Parameter: 608d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 609d382aafbSBarry Smith . t1 - type of first memory elements 610d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 611d382aafbSBarry Smith . t2 - type of second memory elements 612d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 613d382aafbSBarry Smith . t3 - type of third memory elements 614d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 615d382aafbSBarry Smith - t4 - type of fourth memory elements 616d382aafbSBarry Smith 617d382aafbSBarry Smith Output Parameter: 618d382aafbSBarry Smith + r1 - memory allocated in first chunk 619d382aafbSBarry Smith . r2 - memory allocated in second chunk 620d382aafbSBarry Smith . r3 - memory allocated in third chunk 621d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 622d382aafbSBarry Smith 623d382aafbSBarry Smith Level: developer 624d382aafbSBarry Smith 625d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 626d382aafbSBarry Smith 627d382aafbSBarry Smith Concepts: memory allocation 628d382aafbSBarry Smith 629d382aafbSBarry Smith M*/ 630d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 631d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 632d382aafbSBarry Smith #else 633d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6343b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 635d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 636d382aafbSBarry Smith #endif 637d382aafbSBarry Smith 638d382aafbSBarry Smith /*MC 639503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 640d382aafbSBarry Smith 641eca87e8dSBarry Smith Synopsis: 642eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 643eca87e8dSBarry Smith 644eca87e8dSBarry Smith Not Collective 645eca87e8dSBarry Smith 646d382aafbSBarry Smith Input Parameter: 647d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 648d382aafbSBarry Smith . t1 - type of first memory elements 649d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 650d382aafbSBarry Smith . t2 - type of second memory elements 651d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 652d382aafbSBarry Smith . t3 - type of third memory elements 653d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 654d382aafbSBarry Smith . t4 - type of fourth memory elements 655d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 656d382aafbSBarry Smith - t5 - type of fifth memory elements 657d382aafbSBarry Smith 658d382aafbSBarry Smith Output Parameter: 659d382aafbSBarry Smith + r1 - memory allocated in first chunk 660d382aafbSBarry Smith . r2 - memory allocated in second chunk 661d382aafbSBarry Smith . r3 - memory allocated in third chunk 662d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 663d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 664d382aafbSBarry Smith 665d382aafbSBarry Smith Level: developer 666d382aafbSBarry Smith 667d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 668d382aafbSBarry Smith 669d382aafbSBarry Smith Concepts: memory allocation 670d382aafbSBarry Smith 671d382aafbSBarry Smith M*/ 672d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 673d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 674d382aafbSBarry Smith #else 675d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 6763b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 677d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 678d382aafbSBarry Smith #endif 679d382aafbSBarry Smith 680d382aafbSBarry Smith 681d382aafbSBarry Smith /*MC 682503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 683d382aafbSBarry Smith 684eca87e8dSBarry Smith Synopsis: 685eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 686eca87e8dSBarry Smith 687eca87e8dSBarry Smith Not Collective 688eca87e8dSBarry Smith 689d382aafbSBarry Smith Input Parameter: 690d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 691d382aafbSBarry Smith . t1 - type of first memory elements 692d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 693d382aafbSBarry Smith . t2 - type of second memory elements 694d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 695d382aafbSBarry Smith . t3 - type of third memory elements 696d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 697d382aafbSBarry Smith . t4 - type of fourth memory elements 698d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 699d382aafbSBarry Smith . t5 - type of fifth memory elements 700d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 701d382aafbSBarry Smith - t6 - type of sixth memory elements 702d382aafbSBarry Smith 703d382aafbSBarry Smith Output Parameter: 704d382aafbSBarry Smith + r1 - memory allocated in first chunk 705d382aafbSBarry Smith . r2 - memory allocated in second chunk 706d382aafbSBarry Smith . r3 - memory allocated in third chunk 707d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 708d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 709d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 710d382aafbSBarry Smith 711d382aafbSBarry Smith Level: developer 712d382aafbSBarry Smith 713d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 714d382aafbSBarry Smith 715d382aafbSBarry Smith Concepts: memory allocation 716d382aafbSBarry Smith 717d382aafbSBarry Smith M*/ 718d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 719d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 720d382aafbSBarry Smith #else 721d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7223b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 723d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 724d382aafbSBarry Smith #endif 725d382aafbSBarry Smith 726d382aafbSBarry Smith /*MC 727503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 728d382aafbSBarry Smith 729eca87e8dSBarry Smith Synopsis: 730eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 731eca87e8dSBarry Smith 732eca87e8dSBarry Smith Not Collective 733eca87e8dSBarry Smith 734d382aafbSBarry Smith Input Parameter: 735d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 736d382aafbSBarry Smith . t1 - type of first memory elements 737d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 738d382aafbSBarry Smith . t2 - type of second memory elements 739d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 740d382aafbSBarry Smith . t3 - type of third memory elements 741d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 742d382aafbSBarry Smith . t4 - type of fourth memory elements 743d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 744d382aafbSBarry Smith . t5 - type of fifth memory elements 745d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 746d382aafbSBarry Smith . t6 - type of sixth memory elements 747d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 748d382aafbSBarry Smith - t7 - type of sixth memory elements 749d382aafbSBarry Smith 750d382aafbSBarry Smith Output Parameter: 751d382aafbSBarry Smith + r1 - memory allocated in first chunk 752d382aafbSBarry Smith . r2 - memory allocated in second chunk 753d382aafbSBarry Smith . r3 - memory allocated in third chunk 754d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 755d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 756d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 757eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 758d382aafbSBarry Smith 759d382aafbSBarry Smith Level: developer 760d382aafbSBarry Smith 761d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 762d382aafbSBarry Smith 763d382aafbSBarry Smith Concepts: memory allocation 764d382aafbSBarry Smith 765d382aafbSBarry Smith M*/ 766d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 767d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 768d382aafbSBarry Smith #else 769d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 7703b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 771d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 772d382aafbSBarry Smith #endif 773d382aafbSBarry Smith 774d382aafbSBarry Smith /*MC 775503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 776d382aafbSBarry Smith 777eca87e8dSBarry Smith Synopsis: 778eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 779eca87e8dSBarry Smith 780eca87e8dSBarry Smith Not Collective 781eca87e8dSBarry Smith 782d382aafbSBarry Smith Input Parameter: 783d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 784d382aafbSBarry Smith 785d382aafbSBarry Smith Output Parameter: 786d382aafbSBarry Smith . result - memory allocated 787d382aafbSBarry Smith 788d382aafbSBarry Smith Level: beginner 789d382aafbSBarry Smith 790ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 791d382aafbSBarry Smith 792d382aafbSBarry Smith Concepts: memory allocation 793d382aafbSBarry Smith 794d382aafbSBarry Smith M*/ 795d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 796ad0619ddSBarry Smith 797ad0619ddSBarry Smith /*MC 798ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 799ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 800ad0619ddSBarry Smith 801ad0619ddSBarry Smith Synopsis: 802ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 803ad0619ddSBarry Smith 804ad0619ddSBarry Smith Not Collective 805ad0619ddSBarry Smith 806ad0619ddSBarry Smith Input Parameter: 807ad0619ddSBarry Smith + obj - object memory is logged to 808ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 809ad0619ddSBarry Smith 810ad0619ddSBarry Smith Output Parameter: 811ad0619ddSBarry Smith . result - memory allocated 812ad0619ddSBarry Smith 813ad0619ddSBarry Smith Level: developer 814ad0619ddSBarry Smith 815ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 816ad0619ddSBarry Smith 817ad0619ddSBarry Smith Concepts: memory allocation 818ad0619ddSBarry Smith 819ad0619ddSBarry Smith M*/ 820d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 821d382aafbSBarry Smith 822d382aafbSBarry Smith /*MC 823d382aafbSBarry Smith PetscFree - Frees memory 824d382aafbSBarry Smith 825eca87e8dSBarry Smith Synopsis: 826eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 827eca87e8dSBarry Smith 828eca87e8dSBarry Smith Not Collective 829eca87e8dSBarry Smith 830d382aafbSBarry Smith Input Parameter: 831d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 832d382aafbSBarry Smith 833d382aafbSBarry Smith Level: beginner 834d382aafbSBarry Smith 835d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 836d382aafbSBarry Smith 837d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 838d382aafbSBarry Smith 839d382aafbSBarry Smith Concepts: memory allocation 840d382aafbSBarry Smith 841d382aafbSBarry Smith M*/ 84212537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 843d382aafbSBarry Smith 844d382aafbSBarry Smith /*MC 845d382aafbSBarry Smith PetscFreeVoid - Frees memory 846d382aafbSBarry Smith 847d382aafbSBarry Smith Synopsis: 848d382aafbSBarry Smith void PetscFreeVoid(void *memory) 849d382aafbSBarry Smith 850eca87e8dSBarry Smith Not Collective 851eca87e8dSBarry Smith 852eca87e8dSBarry Smith Input Parameter: 853eca87e8dSBarry Smith . memory - memory to free 854eca87e8dSBarry Smith 855d382aafbSBarry Smith Level: beginner 856d382aafbSBarry Smith 857d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 858d382aafbSBarry Smith 859d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 860d382aafbSBarry Smith 861d382aafbSBarry Smith Concepts: memory allocation 862d382aafbSBarry Smith 863d382aafbSBarry Smith M*/ 8642714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 865d382aafbSBarry Smith 866d382aafbSBarry Smith 867d382aafbSBarry Smith /*MC 868d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 869d382aafbSBarry Smith 870eca87e8dSBarry Smith Synopsis: 871eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 872eca87e8dSBarry Smith 873eca87e8dSBarry Smith Not Collective 874eca87e8dSBarry Smith 875d382aafbSBarry Smith Input Parameter: 876d382aafbSBarry Smith + memory1 - memory to free 877d382aafbSBarry Smith - memory2 - 2nd memory to free 878d382aafbSBarry Smith 879d382aafbSBarry Smith Level: developer 880d382aafbSBarry Smith 881d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 882d382aafbSBarry Smith 883d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 884d382aafbSBarry Smith 885d382aafbSBarry Smith Concepts: memory allocation 886d382aafbSBarry Smith 887d382aafbSBarry Smith M*/ 888d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 889d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 890d382aafbSBarry Smith #else 89181dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 892d382aafbSBarry Smith #endif 893d382aafbSBarry Smith 894d382aafbSBarry Smith /*MC 895d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 896d382aafbSBarry Smith 897eca87e8dSBarry Smith Synopsis: 898eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 899eca87e8dSBarry Smith 900eca87e8dSBarry Smith Not Collective 901eca87e8dSBarry Smith 902d382aafbSBarry Smith Input Parameter: 903d382aafbSBarry Smith + memory1 - memory to free 904d382aafbSBarry Smith . memory2 - 2nd memory to free 905d382aafbSBarry Smith - memory3 - 3rd memory to free 906d382aafbSBarry Smith 907d382aafbSBarry Smith Level: developer 908d382aafbSBarry Smith 909d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 910d382aafbSBarry Smith 911d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 912d382aafbSBarry Smith 913d382aafbSBarry Smith Concepts: memory allocation 914d382aafbSBarry Smith 915d382aafbSBarry Smith M*/ 916d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 917d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 918d382aafbSBarry Smith #else 91981dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 920d382aafbSBarry Smith #endif 921d382aafbSBarry Smith 922d382aafbSBarry Smith /*MC 923d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 924d382aafbSBarry Smith 925eca87e8dSBarry Smith Synopsis: 926eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 927eca87e8dSBarry Smith 928eca87e8dSBarry Smith Not Collective 929eca87e8dSBarry Smith 930d382aafbSBarry Smith Input Parameter: 931d382aafbSBarry Smith + m1 - memory to free 932d382aafbSBarry Smith . m2 - 2nd memory to free 933d382aafbSBarry Smith . m3 - 3rd memory to free 934d382aafbSBarry Smith - m4 - 4th memory to free 935d382aafbSBarry Smith 936d382aafbSBarry Smith Level: developer 937d382aafbSBarry Smith 938d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 939d382aafbSBarry Smith 940d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 941d382aafbSBarry Smith 942d382aafbSBarry Smith Concepts: memory allocation 943d382aafbSBarry Smith 944d382aafbSBarry Smith M*/ 945d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 946d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 947d382aafbSBarry Smith #else 94881dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 949d382aafbSBarry Smith #endif 950d382aafbSBarry Smith 951d382aafbSBarry Smith /*MC 952d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 953d382aafbSBarry Smith 954eca87e8dSBarry Smith Synopsis: 955eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 956eca87e8dSBarry Smith 957eca87e8dSBarry Smith Not Collective 958eca87e8dSBarry Smith 959d382aafbSBarry Smith Input Parameter: 960d382aafbSBarry Smith + m1 - memory to free 961d382aafbSBarry Smith . m2 - 2nd memory to free 962d382aafbSBarry Smith . m3 - 3rd memory to free 963d382aafbSBarry Smith . m4 - 4th memory to free 964d382aafbSBarry Smith - m5 - 5th memory to free 965d382aafbSBarry Smith 966d382aafbSBarry Smith Level: developer 967d382aafbSBarry Smith 968d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 969d382aafbSBarry Smith 970d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 971d382aafbSBarry Smith 972d382aafbSBarry Smith Concepts: memory allocation 973d382aafbSBarry Smith 974d382aafbSBarry Smith M*/ 975d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 976d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 977d382aafbSBarry Smith #else 97881dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 979d382aafbSBarry Smith #endif 980d382aafbSBarry Smith 981d382aafbSBarry Smith 982d382aafbSBarry Smith /*MC 983d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 984d382aafbSBarry Smith 985eca87e8dSBarry Smith Synopsis: 986eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 987eca87e8dSBarry Smith 988eca87e8dSBarry Smith Not Collective 989eca87e8dSBarry Smith 990d382aafbSBarry Smith Input Parameter: 991d382aafbSBarry Smith + m1 - memory to free 992d382aafbSBarry Smith . m2 - 2nd memory to free 993d382aafbSBarry Smith . m3 - 3rd memory to free 994d382aafbSBarry Smith . m4 - 4th memory to free 995d382aafbSBarry Smith . m5 - 5th memory to free 996d382aafbSBarry Smith - m6 - 6th memory to free 997d382aafbSBarry Smith 998d382aafbSBarry Smith 999d382aafbSBarry Smith Level: developer 1000d382aafbSBarry Smith 1001d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1004d382aafbSBarry Smith 1005d382aafbSBarry Smith Concepts: memory allocation 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith M*/ 1008d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1009d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1010d382aafbSBarry Smith #else 101181dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1012d382aafbSBarry Smith #endif 1013d382aafbSBarry Smith 1014d382aafbSBarry Smith /*MC 1015d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1016d382aafbSBarry Smith 1017eca87e8dSBarry Smith Synopsis: 1018eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1019eca87e8dSBarry Smith 1020eca87e8dSBarry Smith Not Collective 1021eca87e8dSBarry Smith 1022d382aafbSBarry Smith Input Parameter: 1023d382aafbSBarry Smith + m1 - memory to free 1024d382aafbSBarry Smith . m2 - 2nd memory to free 1025d382aafbSBarry Smith . m3 - 3rd memory to free 1026d382aafbSBarry Smith . m4 - 4th memory to free 1027d382aafbSBarry Smith . m5 - 5th memory to free 1028d382aafbSBarry Smith . m6 - 6th memory to free 1029d382aafbSBarry Smith - m7 - 7th memory to free 1030d382aafbSBarry Smith 1031d382aafbSBarry Smith 1032d382aafbSBarry Smith Level: developer 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1035d382aafbSBarry Smith 1036d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1037d382aafbSBarry Smith PetscMalloc7() 1038d382aafbSBarry Smith 1039d382aafbSBarry Smith Concepts: memory allocation 1040d382aafbSBarry Smith 1041d382aafbSBarry Smith M*/ 1042d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1043d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1044d382aafbSBarry Smith #else 104581dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1046d382aafbSBarry Smith #endif 1047d382aafbSBarry Smith 10487087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 10497087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 10507087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 10517087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1052d382aafbSBarry Smith 1053d382aafbSBarry Smith /* 1054*a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1055*a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1056*a5057860SBarry Smith timing etc. 1057*a5057860SBarry Smith */ 1058*a5057860SBarry Smith typedef double PetscLogDouble; 1059*a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1060*a5057860SBarry Smith 1061*a5057860SBarry Smith /* 106266d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1063d382aafbSBarry Smith */ 10647087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 10657087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 10667087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 10677087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 10687087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 10697087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 10707087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 107118a2528dSJed Brown extern PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1072d382aafbSBarry Smith 1073d382aafbSBarry Smith /*E 1074d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1075d382aafbSBarry Smith 1076d382aafbSBarry Smith Level: beginner 1077d382aafbSBarry Smith 1078d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1079d382aafbSBarry Smith 1080d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1081d382aafbSBarry Smith PetscDataTypeGetSize() 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith E*/ 1084d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 108559a34000SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType; 1086d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1087d382aafbSBarry Smith 1088d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1089d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1090d382aafbSBarry Smith #else 1091ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1092d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 109359a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 109459a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1095d382aafbSBarry Smith #else 1096d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1097d382aafbSBarry Smith #endif 1098d382aafbSBarry Smith #endif 1099ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1100d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 110159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 110259a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1103d382aafbSBarry Smith #else 1104d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1105d382aafbSBarry Smith #endif 1106d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1107d382aafbSBarry Smith 11087087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11097087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11107087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1111d382aafbSBarry Smith 1112d382aafbSBarry Smith /* 1113d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1114d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1115d382aafbSBarry Smith functionality and/or error checking. 1116d382aafbSBarry Smith */ 11177087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11187087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11197087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11207087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11217087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11227087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11237087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11247087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11257087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 11267087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 11277087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 11287087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 11297087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 11307087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 11317087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 11327087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 11337087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 11347087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 11357087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 113674722a09SBarry Smith extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11377ba3a57cSBarry Smith extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 11387087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 11397087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith /*S 1142d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1143d382aafbSBarry Smith 1144d382aafbSBarry Smith Level: intermediate 1145d382aafbSBarry Smith 1146d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1147d382aafbSBarry Smith S*/ 1148d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1149d382aafbSBarry Smith 11507087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 11517087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 11528c74ee41SBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken*); 1153d382aafbSBarry Smith 1154d382aafbSBarry Smith /* 1155d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1156d382aafbSBarry Smith */ 11577087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 11582414b3c7SJed Brown #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1159b0c94c62SJed Brown extern MPI_Op MPIU_SUM; 11602414b3c7SJed Brown #else 11612414b3c7SJed Brown #define MPIU_SUM MPI_SUM 11622414b3c7SJed Brown #endif 11632414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1164d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1165d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1166d9822059SBarry Smith #else 1167d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1168d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1169d9822059SBarry Smith #endif 11707087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1171d382aafbSBarry Smith 1172a25532f0SBarry Smith extern PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1173a25532f0SBarry Smith extern PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1174eb3f98d2SBarry Smith 1175d382aafbSBarry Smith /*S 1176d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1177d382aafbSBarry Smith 1178d382aafbSBarry Smith Level: beginner 1179d382aafbSBarry Smith 11802981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1181d382aafbSBarry Smith 11821890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1183d382aafbSBarry Smith S*/ 1184d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1185d382aafbSBarry Smith 1186d382aafbSBarry Smith /*S 1187d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1188d382aafbSBarry Smith by string name 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith Level: advanced 1191d382aafbSBarry Smith 11922981ebdbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy(), PetscOpFlist 1193d382aafbSBarry Smith S*/ 1194d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1195d382aafbSBarry Smith 1196e4d1774bSDmitry Karpeev /*S 1197e4d1774bSDmitry Karpeev PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries, 1198e4d1774bSDmitry Karpeev accessed by string op name together with string argument types. 1199e4d1774bSDmitry Karpeev 1200e4d1774bSDmitry Karpeev Level: advanced 1201e4d1774bSDmitry Karpeev 12022981ebdbSBarry Smith .seealso: PetscFList, PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy() 1203e4d1774bSDmitry Karpeev S*/ 1204e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList; 1205e4d1774bSDmitry Karpeev 1206d382aafbSBarry Smith /*E 1207d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith Level: beginner 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1212d382aafbSBarry Smith 1213d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1214d382aafbSBarry Smith 1215d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1216d382aafbSBarry Smith 1217d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1218d382aafbSBarry Smith 1219d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1220d382aafbSBarry Smith 1221d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1222d382aafbSBarry Smith E*/ 1223d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith #include "petscviewer.h" 1226d382aafbSBarry Smith #include "petscoptions.h" 1227d382aafbSBarry Smith 12280700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 12297087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 12307087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 12317087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith /* 1234d382aafbSBarry Smith Routines that get memory usage information from the OS 1235d382aafbSBarry Smith */ 12367087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 12377087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 12387087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 12397087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1240d382aafbSBarry Smith 12417087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 12427087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 12437087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 12447087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1245d382aafbSBarry Smith 1246d382aafbSBarry Smith /* 1247d382aafbSBarry Smith Initialization of PETSc 1248d382aafbSBarry Smith */ 12497087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 12502981ebdbSBarry Smith extern PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 12517087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 12527087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 12537087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 12547087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 125509573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 12567087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 12577087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 12587087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1259d382aafbSBarry Smith 12607087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 12617087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 126485afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 126585afcc9aSBarry Smith extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 126685afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFinalize(void); 126785afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 126885afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 126985afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 127085afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1271d382aafbSBarry Smith 12727087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 12737087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 12747087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 12755180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1276d382aafbSBarry Smith 1277d382aafbSBarry Smith /* 1278d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 12792981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1280d382aafbSBarry Smith */ 1281d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1282d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1283d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith /* 1286d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1287d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1288503cfb0cSBarry Smith 1289503cfb0cSBarry Smith Level: developer 1290503cfb0cSBarry Smith 1291503cfb0cSBarry Smith .seealso: PetscUseMethod() 1292d382aafbSBarry Smith */ 1293d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1294d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1295d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1296d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1297d382aafbSBarry Smith } 1298503cfb0cSBarry Smith 1299503cfb0cSBarry Smith /* 1300503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1301503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1302503cfb0cSBarry Smith 1303503cfb0cSBarry Smith Level: developer 1304503cfb0cSBarry Smith 1305503cfb0cSBarry Smith .seealso: PetscTryMethod() 1306503cfb0cSBarry Smith */ 1307d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1308d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1309d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1310d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1311703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1312d382aafbSBarry Smith } 1313503cfb0cSBarry Smith 1314d382aafbSBarry Smith /* 1315d382aafbSBarry Smith Functions that can act on any PETSc object. 1316d382aafbSBarry Smith */ 1317fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13187087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13197087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1320609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13217087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13227087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13237087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13247087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 13257087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 13267087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 13277087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 13287087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 13297087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 13307087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 13317087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 13327087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 13337087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 13347087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 13357087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 13366ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 13377087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 13387087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 13397087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 13407087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 13417087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 13427087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 13437087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 13447087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1345d382aafbSBarry Smith 1346d382aafbSBarry Smith /*MC 1347d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1348d382aafbSBarry Smith 1349eca87e8dSBarry Smith Synopsis: 1350eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1351eca87e8dSBarry Smith 1352ad4df100SBarry Smith Logically Collective on PetscObject 1353d382aafbSBarry Smith 1354d382aafbSBarry Smith Input Parameters: 1355d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1356d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1357d382aafbSBarry Smith . name - name associated with the child function 1358d382aafbSBarry Smith . fname - name of the function 1359d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1360d382aafbSBarry Smith 1361d382aafbSBarry Smith Level: advanced 1362d382aafbSBarry Smith 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith Notes: 1365d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1366d382aafbSBarry Smith 1367d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1368d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1369d382aafbSBarry Smith 1370d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 137120de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1372d382aafbSBarry Smith enabled. 1373d382aafbSBarry Smith 1374d382aafbSBarry Smith Concepts: objects^composing functions 1375d382aafbSBarry Smith Concepts: composing functions 1376d382aafbSBarry Smith Concepts: functions^querying 1377d382aafbSBarry Smith Concepts: objects^querying 1378d382aafbSBarry Smith Concepts: querying objects 1379d382aafbSBarry Smith 1380d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1381d382aafbSBarry Smith M*/ 1382d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1383d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1384d382aafbSBarry Smith #else 1385d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1386d382aafbSBarry Smith #endif 1387d382aafbSBarry Smith 13887087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 13897087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 13907087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 13917087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 13927087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 13937087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 13947087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 13957087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 13967087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 13977087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 13987087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 1399251f4c67SDmitry Karpeev extern PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1400251f4c67SDmitry Karpeev extern PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14017087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14027087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1403d382aafbSBarry Smith 1404d382aafbSBarry Smith /* 1405d382aafbSBarry Smith Defines PETSc error handling. 1406d382aafbSBarry Smith */ 1407d382aafbSBarry Smith #include "petscerror.h" 1408d382aafbSBarry Smith 1409d382aafbSBarry Smith /*S 1410503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1411d382aafbSBarry Smith 14121d0fab5eSBarry Smith Level: developer 1413d382aafbSBarry Smith 14141d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14151d0fab5eSBarry Smith 14162981ebdbSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFList 1417d382aafbSBarry Smith S*/ 1418d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1419d382aafbSBarry Smith 1420fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14217087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1422bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14237087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14246ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 14257087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1426d382aafbSBarry Smith 1427d382aafbSBarry Smith /* 1428503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1429d382aafbSBarry Smith link libraries that will be loaded as needed. 1430d382aafbSBarry Smith */ 14317087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 14327087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 14334b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 14347087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1435d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1436d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1437d382aafbSBarry Smith #else 1438d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1439d382aafbSBarry Smith #endif 14407087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 14417087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 14427087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 14437087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1444d382aafbSBarry Smith 144548703020SDmitry Karpeev /* 144648703020SDmitry Karpeev Multiple dispatch operation function lists. Lists of names of routines with corresponding 144748703020SDmitry Karpeev argument type names with function pointers or in dynamic link libraries that will be loaded 144848703020SDmitry Karpeev as needed. Search on the op name and argument type names. 144948703020SDmitry Karpeev */ 14502356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]); 145148703020SDmitry Karpeev extern PetscErrorCode PetscOpFListDestroy(PetscOpFList*); 14522356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]); 145348703020SDmitry Karpeev extern PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer); 14542981ebdbSBarry Smith 1455d382aafbSBarry Smith /*S 1456d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1457d382aafbSBarry Smith 1458d382aafbSBarry Smith Level: advanced 1459d382aafbSBarry Smith 146020de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1461d382aafbSBarry Smith 1462d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1463d382aafbSBarry Smith S*/ 1464d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1465d44a1e48SBarry Smith extern PetscDLLibrary PetscDLLibrariesLoaded; 14667087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 14677087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 14687087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 14697087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 14707087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 14717087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 14727087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1473d382aafbSBarry Smith 1474d382aafbSBarry Smith /* 1475a5a3d712SDmitry Karpeev PetscShell support. Needs to be better documented. 147605846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 147705846914SDmitry Karpeev */ 1478a5a3d712SDmitry Karpeev #include "petscshell.h" 147905846914SDmitry Karpeev 148005846914SDmitry Karpeev /* 1481d382aafbSBarry Smith Useful utility routines 1482d382aafbSBarry Smith */ 14837087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 14847087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 14857087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 14867087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 14877087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 14887087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1489d382aafbSBarry Smith 1490503cfb0cSBarry Smith /* 1491ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1492503cfb0cSBarry Smith 1493503cfb0cSBarry Smith Notes: This is useful in cases like 1494503cfb0cSBarry Smith $ int *a; 1495ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1496ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1497503cfb0cSBarry Smith */ 1498d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1499503cfb0cSBarry Smith 1500d382aafbSBarry Smith /* 1501d382aafbSBarry Smith Defines basic graphics available from PETSc. 1502d382aafbSBarry Smith */ 1503d382aafbSBarry Smith #include "petscdraw.h" 1504d382aafbSBarry Smith 1505d382aafbSBarry Smith /* 1506d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1507d382aafbSBarry Smith */ 1508b45d2f2cSJed Brown #include "petsc-private/petscimpl.h" 1509503cfb0cSBarry Smith 1510238ccf28SShri Abhyankar 1511d382aafbSBarry Smith /*MC 1512d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1513d382aafbSBarry Smith 1514d382aafbSBarry Smith Synopsis: 1515d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1516d382aafbSBarry Smith 1517eca87e8dSBarry Smith Not Collective 1518eca87e8dSBarry Smith 1519d382aafbSBarry Smith Input Parameters: 1520d382aafbSBarry Smith . format - the usual printf() format string 1521d382aafbSBarry Smith 1522d382aafbSBarry Smith Options Database Keys: 1523d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1524d382aafbSBarry Smith (default) stderr 1525d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1526d382aafbSBarry Smith error is handled.) 1527d382aafbSBarry Smith 1528d382aafbSBarry Smith Notes: Use 1529d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1530d382aafbSBarry Smith $ error is handled.) and 1531d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1532c9a19010SBarry Smith $ of you can use your own function 1533d382aafbSBarry Smith 1534d382aafbSBarry Smith Use 1535d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1536d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1537d382aafbSBarry Smith 1538d382aafbSBarry Smith Use 1539d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1540d382aafbSBarry Smith 1541d382aafbSBarry Smith Level: developer 1542d382aafbSBarry Smith 1543d382aafbSBarry Smith Fortran Note: 1544d382aafbSBarry Smith This routine is not supported in Fortran. 1545d382aafbSBarry Smith 1546d382aafbSBarry Smith Concepts: error messages^printing 1547d382aafbSBarry Smith Concepts: printing^error messages 1548d382aafbSBarry Smith 1549c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1550d382aafbSBarry Smith M*/ 15517087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1552d382aafbSBarry Smith 1553d382aafbSBarry Smith /*MC 1554d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1555d382aafbSBarry Smith 1556d382aafbSBarry Smith Synopsis: 1557d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1558d382aafbSBarry Smith 1559eca87e8dSBarry Smith Not Collective 1560eca87e8dSBarry Smith 1561d382aafbSBarry Smith Input Parameters: 1562d382aafbSBarry Smith . format - the usual printf() format string 1563d382aafbSBarry Smith 1564d382aafbSBarry Smith Level: developer 1565d382aafbSBarry Smith 1566d382aafbSBarry Smith Fortran Note: 1567d382aafbSBarry Smith This routine is not supported in Fortran. 1568d382aafbSBarry Smith 1569d382aafbSBarry Smith Concepts: help messages^printing 1570d382aafbSBarry Smith Concepts: printing^help messages 1571d382aafbSBarry Smith 1572d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1573d382aafbSBarry Smith M*/ 15747087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1575d382aafbSBarry Smith 1576fcfd50ebSBarry Smith /* 1577fcfd50ebSBarry Smith Defines PETSc profiling. 1578fcfd50ebSBarry Smith */ 1579fcfd50ebSBarry Smith #include "petsclog.h" 1580fcfd50ebSBarry Smith 1581fcfd50ebSBarry Smith /* 1582fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1583fcfd50ebSBarry Smith */ 1584fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1585fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1586fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1587fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1588fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1589fcfd50ebSBarry Smith #else 1590fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1591fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1592fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1593fcfd50ebSBarry Smith #endif 1594fcfd50ebSBarry Smith 1595fcfd50ebSBarry Smith /* 1596fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1597fcfd50ebSBarry Smith */ 1598fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1599fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1600fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1601fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1602fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1603fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1604257d2499SJed Brown extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1605fcfd50ebSBarry Smith 1606fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1607fcfd50ebSBarry Smith #include <stdarg.h> 1608fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1609fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1610fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1611fcfd50ebSBarry Smith 1612fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1613fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1614fcfd50ebSBarry Smith #endif 1615fcfd50ebSBarry Smith 161609573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 161709573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 161809573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1619d382aafbSBarry Smith 1620d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16217087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16227087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1623d382aafbSBarry Smith #endif 1624d382aafbSBarry Smith 16257087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 16267087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 16277087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 16287087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 16297087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 16307087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 16317087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1632d382aafbSBarry Smith 16337087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1634d382aafbSBarry Smith 1635d382aafbSBarry Smith /*S 1636d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1637d382aafbSBarry Smith 1638d382aafbSBarry Smith Level: advanced 1639d382aafbSBarry Smith 1640d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1641d382aafbSBarry Smith S*/ 16427087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1643d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 16447087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 16457087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1646fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 16477087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 16487087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1649d382aafbSBarry Smith 1650d382aafbSBarry Smith /* 1651d382aafbSBarry Smith For use in debuggers 1652d382aafbSBarry Smith */ 16537087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 16547087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 16557087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 16567087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 16577087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1658d382aafbSBarry Smith 1659d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1660d382aafbSBarry Smith #include <memory.h> 1661d382aafbSBarry Smith #endif 1662d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1663d382aafbSBarry Smith #include <stdlib.h> 1664d382aafbSBarry Smith #endif 1665d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1666d382aafbSBarry Smith #include <strings.h> 1667d382aafbSBarry Smith #endif 1668d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1669d382aafbSBarry Smith #include <string.h> 1670d382aafbSBarry Smith #endif 16716c7e564aSBarry Smith 16724a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1673d382aafbSBarry Smith #include <xmmintrin.h> 1674d382aafbSBarry Smith #endif 1675d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1676d382aafbSBarry Smith #include <stdint.h> 1677d382aafbSBarry Smith #endif 1678d382aafbSBarry Smith 1679fcfd50ebSBarry Smith #undef __FUNCT__ 1680fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1681d382aafbSBarry Smith /*@C 1682d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1683d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1684d382aafbSBarry Smith PetscMemmove() in that case. 1685d382aafbSBarry Smith 1686d382aafbSBarry Smith Not Collective 1687d382aafbSBarry Smith 1688d382aafbSBarry Smith Input Parameters: 1689d382aafbSBarry Smith + b - pointer to initial memory space 1690d382aafbSBarry Smith - n - length (in bytes) of space to copy 1691d382aafbSBarry Smith 1692d382aafbSBarry Smith Output Parameter: 1693d382aafbSBarry Smith . a - pointer to copy space 1694d382aafbSBarry Smith 1695d382aafbSBarry Smith Level: intermediate 1696d382aafbSBarry Smith 1697d382aafbSBarry Smith Compile Option: 1698d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1699d382aafbSBarry Smith for memory copies on double precision values. 1700d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1701d382aafbSBarry Smith for memory copies on double precision values. 1702d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1703d382aafbSBarry Smith for memory copies on double precision values. 1704d382aafbSBarry Smith 1705d382aafbSBarry Smith Note: 1706d382aafbSBarry Smith This routine is analogous to memcpy(). 1707d382aafbSBarry Smith 1708503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1709503cfb0cSBarry Smith 1710d382aafbSBarry Smith Concepts: memory^copying 1711d382aafbSBarry Smith Concepts: copying^memory 1712d382aafbSBarry Smith 1713d382aafbSBarry Smith .seealso: PetscMemmove() 1714d382aafbSBarry Smith 1715d382aafbSBarry Smith @*/ 17167087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1717d382aafbSBarry Smith { 1718d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1719d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1720d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1721a7e36092SMatthew G Knepley PetscFunctionBegin; 1722e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1723e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1724a7e36092SMatthew G Knepley #else 1725d382aafbSBarry Smith PetscFunctionBegin; 1726a7e36092SMatthew G Knepley #endif 1727d382aafbSBarry Smith if (a != b) { 1728d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1729e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1730d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1731d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1732d382aafbSBarry Smith #endif 1733d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1734d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1735d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1736d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1737d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1738d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1739d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1740d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1741d382aafbSBarry Smith #else 1742d382aafbSBarry Smith size_t i; 1743d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1744d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1745d382aafbSBarry Smith #endif 1746d382aafbSBarry Smith } else { 1747d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1748d382aafbSBarry Smith } 1749d382aafbSBarry Smith #else 1750d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1751d382aafbSBarry Smith #endif 1752d382aafbSBarry Smith } 1753d382aafbSBarry Smith PetscFunctionReturn(0); 1754d382aafbSBarry Smith } 1755d382aafbSBarry Smith 1756d382aafbSBarry Smith /*@C 1757d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1758d382aafbSBarry Smith 1759d382aafbSBarry Smith Not Collective 1760d382aafbSBarry Smith 1761d382aafbSBarry Smith Input Parameters: 1762d382aafbSBarry Smith + a - pointer to beginning memory location 1763d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1764d382aafbSBarry Smith 1765d382aafbSBarry Smith Level: intermediate 1766d382aafbSBarry Smith 1767d382aafbSBarry Smith Compile Option: 1768d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1769d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1770d382aafbSBarry Smith 1771503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1772503cfb0cSBarry Smith 1773d382aafbSBarry Smith Concepts: memory^zeroing 1774d382aafbSBarry Smith Concepts: zeroing^memory 1775d382aafbSBarry Smith 1776d382aafbSBarry Smith .seealso: PetscMemcpy() 1777d382aafbSBarry Smith @*/ 17787087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1779d382aafbSBarry Smith { 1780d382aafbSBarry Smith if (n > 0) { 1781d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1782e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1783d382aafbSBarry Smith #endif 1784d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1785d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1786d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1787d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1788d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1789d382aafbSBarry Smith } else { 1790d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1791d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1792d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1793d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1794d382aafbSBarry Smith } else { 1795d382aafbSBarry Smith #endif 1796d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1797d382aafbSBarry Smith bzero((char *)a,n); 1798d382aafbSBarry Smith #else 1799d382aafbSBarry Smith memset((char*)a,0,n); 1800d382aafbSBarry Smith #endif 1801d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1802d382aafbSBarry Smith } 1803d382aafbSBarry Smith #endif 1804d382aafbSBarry Smith } 1805d382aafbSBarry Smith return 0; 1806d382aafbSBarry Smith } 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith /*MC 1809d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1810d382aafbSBarry Smith 1811eca87e8dSBarry Smith Synopsis: 1812eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1813eca87e8dSBarry Smith 1814d382aafbSBarry Smith Not Collective 1815d382aafbSBarry Smith 1816d382aafbSBarry Smith Input Parameters: 1817d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1818d382aafbSBarry Smith . n - number of elements to fetch 1819d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 182050d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1821d382aafbSBarry Smith 1822d382aafbSBarry Smith Level: developer 1823d382aafbSBarry Smith 1824d382aafbSBarry Smith Notes: 1825d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1826d382aafbSBarry Smith 182750d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 182850d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 182950d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 183063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 183163cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 183263cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1833d382aafbSBarry Smith 1834d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1835d382aafbSBarry Smith address). 1836d382aafbSBarry Smith 1837d382aafbSBarry Smith Concepts: memory 1838d382aafbSBarry Smith M*/ 1839d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1840d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1841d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1842d382aafbSBarry Smith } while (0) 1843d382aafbSBarry Smith 1844d382aafbSBarry Smith /* 1845e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1846d382aafbSBarry Smith */ 1847d382aafbSBarry Smith #include "petscmatlab.h" 1848d382aafbSBarry Smith 1849d382aafbSBarry Smith /* 1850d382aafbSBarry Smith Determine if some of the kernel computation routines use 1851d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1852d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1853d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1854e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1855d382aafbSBarry Smith */ 1856d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1857d382aafbSBarry Smith 1858d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1859d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1860d382aafbSBarry Smith #endif 1861d382aafbSBarry Smith 18625a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 18635a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1864d382aafbSBarry Smith #endif 1865d382aafbSBarry Smith 1866d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1867d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1868d382aafbSBarry Smith #endif 1869d382aafbSBarry Smith 1870d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1871d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1872d382aafbSBarry Smith #endif 1873d382aafbSBarry Smith 1874d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1875d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1876d382aafbSBarry Smith #endif 1877d382aafbSBarry Smith 1878d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1879d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1880d382aafbSBarry Smith #endif 1881d382aafbSBarry Smith 1882d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1883d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1884d382aafbSBarry Smith #endif 1885d382aafbSBarry Smith 1886d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1887d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1888d382aafbSBarry Smith #endif 1889d382aafbSBarry Smith 1890d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1891d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1892d382aafbSBarry Smith #endif 1893d382aafbSBarry Smith 1894d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1895d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1896d382aafbSBarry Smith #endif 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1899d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1900d382aafbSBarry Smith #endif 1901d382aafbSBarry Smith 1902d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1903d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1904d382aafbSBarry Smith #endif 1905d382aafbSBarry Smith 1906d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1907d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1908d382aafbSBarry Smith #endif 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1911d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1912d382aafbSBarry Smith #endif 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith #endif 1915d382aafbSBarry Smith 1916d382aafbSBarry Smith /* 1917d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1918d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1919d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1920d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1921d382aafbSBarry Smith ugly extern "C" {} wrappers. 1922d382aafbSBarry Smith */ 1923d382aafbSBarry Smith #if defined(__cplusplus) 1924da861ed6SJed Brown #define PETSC_EXTERN_C extern "C" 1925d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1926d382aafbSBarry Smith #define EXTERN_C_END } 1927d382aafbSBarry Smith #else 1928da861ed6SJed Brown #define PETSC_EXTERN_C 1929d382aafbSBarry Smith #define EXTERN_C_BEGIN 1930d382aafbSBarry Smith #define EXTERN_C_END 1931d382aafbSBarry Smith #endif 1932d382aafbSBarry Smith 1933d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1934d382aafbSBarry Smith 1935d382aafbSBarry Smith /*MC 1936d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1937d382aafbSBarry Smith communication 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith Level: beginner 1940d382aafbSBarry Smith 1941d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1944d382aafbSBarry Smith M*/ 1945d382aafbSBarry Smith 1946d382aafbSBarry Smith /*MC 1947d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1948d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1949d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1950d382aafbSBarry Smith 1951d382aafbSBarry Smith 1952d382aafbSBarry Smith Level: beginner 1953d382aafbSBarry Smith 1954d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1955d382aafbSBarry Smith M*/ 1956d382aafbSBarry Smith 1957d382aafbSBarry Smith /*MC 1958d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1959d382aafbSBarry Smith 1960d382aafbSBarry Smith Level: beginner 1961d382aafbSBarry Smith 1962d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1963d382aafbSBarry Smith M*/ 1964d382aafbSBarry Smith 1965d382aafbSBarry Smith /*MC 1966d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1967d382aafbSBarry Smith Level: beginner 1968d382aafbSBarry Smith 1969d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 1970d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 1973d382aafbSBarry Smith M*/ 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith /*MC 1976d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 1977d382aafbSBarry Smith 1978d382aafbSBarry Smith Level: beginner 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 1981d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 1984d382aafbSBarry Smith M*/ 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith /*MC 1987d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith Level: beginner 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 1992d382aafbSBarry Smith pass this value 1993d382aafbSBarry Smith 1994d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 1995d382aafbSBarry Smith M*/ 1996d382aafbSBarry Smith 1997d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1998d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 1999d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2000d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2001d382aafbSBarry Smith #else 2002d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2003d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2004d382aafbSBarry Smith #endif 2005d382aafbSBarry Smith #endif 2006d382aafbSBarry Smith 2007d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2008d382aafbSBarry Smith 2009d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2010d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2011d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2012d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2013d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2014d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2015d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2016d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2017d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2018d382aafbSBarry Smith 2019d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2020e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2021e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2022eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2023eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2024d382aafbSBarry Smith 2025d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2026e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2027eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2028d382aafbSBarry Smith #else 2029d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2030d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2031d382aafbSBarry Smith #endif 2032d382aafbSBarry Smith 2033d382aafbSBarry Smith #else 2034d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2035d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2036d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2037d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2038d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2039d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2040d382aafbSBarry Smith #endif 2041d382aafbSBarry Smith 2042d382aafbSBarry Smith /* 20432981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2044d382aafbSBarry Smith */ 2045d382aafbSBarry Smith #if defined(hz) 2046d382aafbSBarry Smith #undef hz 2047d382aafbSBarry Smith #endif 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2050d382aafbSBarry Smith 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2053d382aafbSBarry Smith #include <limits.h> 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2056d382aafbSBarry Smith #include <sys/param.h> 2057d382aafbSBarry Smith #endif 2058d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2059d382aafbSBarry Smith #include <sys/types.h> 2060d382aafbSBarry Smith #endif 2061d382aafbSBarry Smith #if defined(MAXPATHLEN) 2062d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2063d382aafbSBarry Smith #elif defined(MAX_PATH) 2064d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2065d382aafbSBarry Smith #elif defined(_MAX_PATH) 2066d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2067d382aafbSBarry Smith #else 2068d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2069d382aafbSBarry Smith #endif 2070d382aafbSBarry Smith 2071d382aafbSBarry Smith /* Special support for C++ */ 2072d382aafbSBarry Smith #include "petscsys.hh" 20736c7e564aSBarry Smith 2074d382aafbSBarry Smith /*MC 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith $ 1) classic Fortran 77 style 2079d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2080d382aafbSBarry Smith $ XXX variablename 2081d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2082d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2083d382aafbSBarry Smith $ 2084d382aafbSBarry Smith $ 2) classic Fortran 90 style 2085d1716517SSatish Balay $#include "finclude/petscXXX.h" 2086d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2087d382aafbSBarry Smith $ XXX variablename 2088d382aafbSBarry Smith $ 2089d382aafbSBarry Smith $ 3) Using Fortran modules 2090d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2091d382aafbSBarry Smith $ use petscXXXX 2092d382aafbSBarry Smith $ XXX variablename 2093d382aafbSBarry Smith $ 2094d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2095d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2096d382aafbSBarry Smith $ use petscXXXX 2097d382aafbSBarry Smith $ type(XXX) variablename 2098e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2099d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2102d382aafbSBarry Smith 2103d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2104d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2105d382aafbSBarry Smith $ integer variablename 2106d382aafbSBarry Smith $ 2107d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2108d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2111d382aafbSBarry Smith for only a few PETSc functions. 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2114d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2115d382aafbSBarry Smith you cannot have something like 2116d382aafbSBarry Smith $ PetscInt row,col 2117d382aafbSBarry Smith $ PetscScalar val 2118d382aafbSBarry Smith $ ... 2119d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2120d382aafbSBarry Smith You must instead have 2121d382aafbSBarry Smith $ PetscInt row(1),col(1) 2122d382aafbSBarry Smith $ PetscScalar val(1) 2123d382aafbSBarry Smith $ ... 2124d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith 2127d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2130d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2131d382aafbSBarry Smith 2132d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2133d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2134d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2135d382aafbSBarry Smith 2136d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2137e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2138d382aafbSBarry Smith 2139d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2140d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2143d382aafbSBarry Smith automatically by "make allfortranstubs". 2144d382aafbSBarry Smith 2145e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2146d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2147d382aafbSBarry Smith include their predecessors 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith Level: beginner 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith M*/ 2152d382aafbSBarry Smith 21537087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 21547087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 21557087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 21567087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 21577087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 21587087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2159d382aafbSBarry Smith 21607087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 21617087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 21627087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 21637087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 21647087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2165d7aa01a8SHong Zhang extern PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 21667087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 21677087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 21687087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 21697087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 21707087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 21717087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 21727087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 21739b67c4b3SDmitry Karpeev extern PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2174d382aafbSBarry Smith 21757087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 21767087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2177d382aafbSBarry Smith 217876bdecfbSBarry Smith /*J 2179d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2180d382aafbSBarry Smith with an optional dynamic library name, for example 2181d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith Level: beginner 2184d382aafbSBarry Smith 2185e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2186d382aafbSBarry Smith with the option --download-sprng 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 218976bdecfbSBarry Smith J*/ 2190d382aafbSBarry Smith #define PetscRandomType char* 2191d382aafbSBarry Smith #define PETSCRAND "rand" 2192d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2193d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith /* Logging support */ 21967087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2197d382aafbSBarry Smith 21987087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2199d382aafbSBarry Smith 2200d382aafbSBarry Smith /*S 2201d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith Level: intermediate 2204d382aafbSBarry Smith 2205d382aafbSBarry Smith Concepts: random numbers 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2208d382aafbSBarry Smith S*/ 2209d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2212d382aafbSBarry Smith extern PetscFList PetscRandomList; 2213ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2214d382aafbSBarry Smith 22157087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 22167087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22177087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 22187087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 22197087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 22207087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 22217087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 22227087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2223d382aafbSBarry Smith 2224d382aafbSBarry Smith /*MC 2225d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2226d382aafbSBarry Smith 2227d382aafbSBarry Smith Synopsis: 22281890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2229d382aafbSBarry Smith 2230d382aafbSBarry Smith Not Collective 2231d382aafbSBarry Smith 2232d382aafbSBarry Smith Input Parameters: 2233d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2234d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2235d382aafbSBarry Smith . func_name - The name of routine to create method context 2236d382aafbSBarry Smith - create_func - The creation routine itself 2237d382aafbSBarry Smith 2238d382aafbSBarry Smith Notes: 2239d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2240d382aafbSBarry Smith 2241d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2242d382aafbSBarry Smith 2243d382aafbSBarry Smith Sample usage: 2244d382aafbSBarry Smith .vb 2245d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2246d382aafbSBarry Smith .ve 2247d382aafbSBarry Smith 2248d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2249d382aafbSBarry Smith .vb 2250d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2251d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2252d382aafbSBarry Smith .ve 2253d382aafbSBarry Smith or at runtime via the option 2254d382aafbSBarry Smith .vb 2255d382aafbSBarry Smith -random_type my_random_name 2256d382aafbSBarry Smith .ve 2257d382aafbSBarry Smith 2258d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2259d382aafbSBarry Smith 2260d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2261d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2262d382aafbSBarry Smith 2263d382aafbSBarry Smith Level: advanced 2264d382aafbSBarry Smith 2265d382aafbSBarry Smith .keywords: PetscRandom, register 2266d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2267d382aafbSBarry Smith M*/ 2268d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2269d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2270d382aafbSBarry Smith #else 2271d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2272d382aafbSBarry Smith #endif 2273d382aafbSBarry Smith 22747087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 22757087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 22767087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 22777087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 22787087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 22797087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 22807087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 22817087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2282fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2283d382aafbSBarry Smith 22847087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 22857087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 22867087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 22877087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 22887087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 22897087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 22907087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2291d382aafbSBarry Smith 22927087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 22937087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 22947087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 22957087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 22967087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 22977087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 22987087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 22997087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23007087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23017087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23027087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23037087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23047087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2305d382aafbSBarry Smith 2306d382aafbSBarry Smith /* 2307d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2308d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2309d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2310d382aafbSBarry Smith PetscBinarySeek(). 2311d382aafbSBarry Smith */ 2312d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2313d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2314d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2315d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2316d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2317d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2318d382aafbSBarry Smith 2319d382aafbSBarry Smith /*E 2320d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith Level: advanced 2323d382aafbSBarry Smith 2324d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2325d382aafbSBarry Smith E*/ 2326d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 23277087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 23287087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 232946090da6SBarry Smith extern PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2330d382aafbSBarry Smith 23317087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 23327087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 23337087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 23347c764164SBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(const char*); 23357087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 23367087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2337d382aafbSBarry Smith 23387087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 23397087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 23407087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 23417087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 23427087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2343d382aafbSBarry Smith 23447087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2345d382aafbSBarry Smith 2346d382aafbSBarry Smith /*E 2347d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2348d382aafbSBarry Smith 2349d382aafbSBarry Smith Level: beginner 2350d382aafbSBarry Smith 2351d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2352d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2353d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2354d382aafbSBarry Smith E*/ 235511f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2356d382aafbSBarry Smith 2357d382aafbSBarry Smith /*MC 2358d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2359d382aafbSBarry Smith 2360d382aafbSBarry Smith Level: beginner 2361d382aafbSBarry Smith 2362d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2363eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2364eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2365d382aafbSBarry Smith 2366d382aafbSBarry Smith M*/ 2367d382aafbSBarry Smith 2368d382aafbSBarry Smith /*MC 2369d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2370d382aafbSBarry Smith value into that location 2371d382aafbSBarry Smith 2372d382aafbSBarry Smith Level: beginner 2373d382aafbSBarry Smith 2374d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2375eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2376eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2377d382aafbSBarry Smith 2378d382aafbSBarry Smith M*/ 2379d382aafbSBarry Smith 2380d382aafbSBarry Smith /*MC 2381d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2382d382aafbSBarry Smith 2383d382aafbSBarry Smith Level: beginner 2384d382aafbSBarry Smith 2385d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2386d382aafbSBarry Smith 2387d382aafbSBarry Smith M*/ 2388d382aafbSBarry Smith 2389d382aafbSBarry Smith /*S 2390d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2391d382aafbSBarry Smith 2392d382aafbSBarry Smith Level: advanced 2393d382aafbSBarry Smith 2394d382aafbSBarry Smith Concepts: communicator, create 2395d382aafbSBarry Smith S*/ 2396d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2397d382aafbSBarry Smith 2398d382aafbSBarry Smith struct _n_PetscSubcomm { 2399d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2400d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2401d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2402d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2403d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2404d382aafbSBarry Smith }; 2405d382aafbSBarry Smith 2406638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2407638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2408638faf0bSHong Zhang 24097087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2410fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24117087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24127c764164SBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 24137087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2414d382aafbSBarry Smith 241582a7e548SBarry Smith #include <petscctable.h> 241682a7e548SBarry Smith 2417d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24186c7e564aSBarry Smith 24199e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24209e03d832SJed Brown #undef __FUNCT__ 24219e03d832SJed Brown #define __FUNCT__ "User provided function" 24229e03d832SJed Brown 2423d382aafbSBarry Smith #endif 2424