1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ed938b00SJed Brown #if defined(__cplusplus) 44ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 45ed938b00SJed Brown #else 46ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 47ed938b00SJed Brown #endif 48ed938b00SJed Brown 49ed938b00SJed Brown #if defined(__cplusplus) 50ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 51ed938b00SJed Brown #else 52ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 53ed938b00SJed Brown #endif 54ed938b00SJed Brown 55ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 56014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 57014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 5821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 59014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 60014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 61014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 6221f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 63d382aafbSBarry Smith #else 64014dd563SJed Brown # define PETSC_DLLEXPORT 65014dd563SJed Brown # define PETSC_DLLIMPORT 6621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #endif 68014dd563SJed Brown 69014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 70014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 71014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 72014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 73014dd563SJed Brown #endif 74014dd563SJed Brown 752c280183SJed Brown #if defined(__cplusplus) 76014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 77638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 7821f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #else 80014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 81638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 826258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 83d382aafbSBarry Smith #endif 8427710113SBarry Smith 852c8e378dSBarry Smith #include <petscversion.h> 86301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 87d382aafbSBarry Smith 88d382aafbSBarry Smith /* ========================================================================== */ 89d382aafbSBarry Smith 90d382aafbSBarry Smith /* 91d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 92d382aafbSBarry Smith 93d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 94d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 95d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 96d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 97d382aafbSBarry Smith mpicxx.h directly in their code 98d382aafbSBarry Smith */ 99fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 100d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 101fa9e63e2SJed Brown #endif 102fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 103d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 104fa9e63e2SJed Brown #endif 1052c8e378dSBarry Smith #include <mpi.h> 10665013866SBarry Smith 107d382aafbSBarry Smith /* 108*a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 109*a7886beaSBarry Smith This usually happens because 110*a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 111*a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 112*a7886beaSBarry Smith */ 113*a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 114*a7886beaSBarry Smith # if !defined(__MPIUNI_H) 115*a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 116*a7886beaSBarry Smith # endif 117*a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 118*a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 119*a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 120*a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 121*a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 122*a7886beaSBarry Smith # endif 123*a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 124*a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 125*a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 126*a7886beaSBarry Smith # elif OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION 127*a7886beaSBarry Smith # error "PETSc was configured with one OpenMPI mpi.h major version but now appears to be compiling using a different OpenMPI mpi.h major version" 128*a7886beaSBarry Smith # elif OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MAINOR_VERSION 129*a7886beaSBarry Smith # error "PETSc was configured with one OpenMPI minor mpi.h version but now appears to be compiling using a different OpenMPI mpi.h minor version" 130*a7886beaSBarry Smith # endif 131*a7886beaSBarry Smith #endif 132*a7886beaSBarry Smith 133*a7886beaSBarry Smith /* 1342981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 135d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 136d382aafbSBarry Smith */ 137d382aafbSBarry Smith #include <stdio.h> 138d382aafbSBarry Smith 139d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 140d382aafbSBarry Smith #if !defined(MPIAPI) 141d382aafbSBarry Smith #define MPIAPI 142d382aafbSBarry Smith #endif 143d382aafbSBarry Smith 144894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 145894dd566SJed Brown #if defined(__has_attribute) 146894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 147894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1488ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1498ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 150894dd566SJed Brown # endif 151894dd566SJed Brown #endif 152894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 153894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1548ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1558ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 156894dd566SJed Brown #endif 157b3506946SBarry Smith 158d382aafbSBarry Smith /*MC 1591957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 160d382aafbSBarry Smith 161d382aafbSBarry Smith Level: beginner 162d382aafbSBarry Smith 163d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 164d382aafbSBarry Smith M*/ 165d382aafbSBarry Smith typedef int PetscErrorCode; 166d382aafbSBarry Smith 167d382aafbSBarry Smith /*MC 168d382aafbSBarry Smith 169503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 170d382aafbSBarry Smith 1711957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1721957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 1731957e957SBarry Smith 1741957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 1751957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 1761957e957SBarry Smith 1771957e957SBarry Smith Level: developer 178d382aafbSBarry Smith 1790700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 180d382aafbSBarry Smith M*/ 1810700a824SBarry Smith typedef int PetscClassId; 182d382aafbSBarry Smith 183d382aafbSBarry Smith 184d382aafbSBarry Smith /*MC 185d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 186d382aafbSBarry Smith 187d382aafbSBarry Smith Level: intermediate 188d382aafbSBarry Smith 189d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1903b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 191d382aafbSBarry Smith 1924dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1932981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 194d382aafbSBarry Smith 195d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 196d382aafbSBarry Smith 197d382aafbSBarry Smith M*/ 198d382aafbSBarry Smith typedef int PetscMPIInt; 199d382aafbSBarry Smith 200d382aafbSBarry Smith /*MC 201d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 202d382aafbSBarry Smith 203d382aafbSBarry Smith Level: intermediate 204d382aafbSBarry Smith 205d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 206d382aafbSBarry Smith M*/ 207d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2085a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 209d382aafbSBarry Smith 210fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 211fab38c73SJed Brown #include <stdint.h> 212fab38c73SJed Brown #endif 213fab38c73SJed Brown 214d382aafbSBarry Smith /*MC 215d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2163b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 217d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 218d382aafbSBarry Smith 219d382aafbSBarry Smith Level: intermediate 220d382aafbSBarry Smith 221d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 222d382aafbSBarry Smith M*/ 223fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 224fab38c73SJed Brown typedef int64_t Petsc64bitInt; 225fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 226f505b413SSatish Balay typedef long long Petsc64bitInt; 227f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 228236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 229236ed0a3SSatish Balay #else 230f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 231236ed0a3SSatish Balay #endif 232d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 233236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 23441860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 235fab38c73SJed Brown # define MPIU_INT MPI_INT64_T 236fab38c73SJed Brown # else 237d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 238fab38c73SJed Brown # endif 239d382aafbSBarry Smith #else 240d382aafbSBarry Smith typedef int PetscInt; 241d382aafbSBarry Smith #define MPIU_INT MPI_INT 242d382aafbSBarry Smith #endif 243e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 244e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 245e56f5c9eSBarry Smith #else 246e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 247e56f5c9eSBarry Smith #endif 248236ed0a3SSatish Balay 249d382aafbSBarry Smith 250702bc34aSSatish Balay /*MC 251702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 252702bc34aSSatish Balay 253702bc34aSSatish Balay Level: intermediate 254702bc34aSSatish Balay 255702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 256702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 257702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 258702bc34aSSatish Balay 259c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2602981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 261702bc34aSSatish Balay 2622981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 263702bc34aSSatish Balay if you run ./configure with the option 264702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2652981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2662981ebdbSBarry Smith 2672981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2682981ebdbSBarry Smith 2692981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 270702bc34aSSatish Balay 271702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 272702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 273702bc34aSSatish Balay 274702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 275702bc34aSSatish Balay 276702bc34aSSatish Balay M*/ 277702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 278702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 279702bc34aSSatish Balay #else 280702bc34aSSatish Balay typedef int PetscBLASInt; 281702bc34aSSatish Balay #endif 282702bc34aSSatish Balay 28358b60935SBarry Smith /*EC 28458b60935SBarry Smith 2852981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 28658b60935SBarry Smith 28758b60935SBarry Smith Level: advanced 28858b60935SBarry Smith 28958b60935SBarry Smith .seealso: PetscObjectSetPrecision() 29058b60935SBarry Smith E*/ 29158b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 292014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 29358b60935SBarry Smith 294503cfb0cSBarry Smith /* 295503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 296503cfb0cSBarry Smith */ 297d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 298adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 299d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 300adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 301d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 302adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 303d382aafbSBarry Smith #else 304d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 305d382aafbSBarry Smith #endif 306d382aafbSBarry Smith 307d382aafbSBarry Smith 308d382aafbSBarry Smith /* 309d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 310d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 311d382aafbSBarry Smith */ 312014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 313d382aafbSBarry Smith 314d382aafbSBarry Smith /* 315d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 316d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 317d382aafbSBarry Smith */ 318014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 319d382aafbSBarry Smith 320d382aafbSBarry Smith /*MC 321d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 322d382aafbSBarry Smith 323d382aafbSBarry Smith Synopsis: 324aaa7dc30SBarry Smith #include <petscsys.h> 325ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 326d382aafbSBarry Smith 327eca87e8dSBarry Smith Not Collective 328eca87e8dSBarry Smith 329d382aafbSBarry Smith Input Parameters: 330d382aafbSBarry Smith . cond - condition or expression 331d382aafbSBarry Smith 332d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 333d382aafbSBarry Smith branch is unlikely. 334d382aafbSBarry Smith 335d382aafbSBarry Smith Level: advanced 336d382aafbSBarry Smith 337d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 338d382aafbSBarry Smith M*/ 339d382aafbSBarry Smith 340d382aafbSBarry Smith /*MC 341d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 342d382aafbSBarry Smith 343d382aafbSBarry Smith Synopsis: 344aaa7dc30SBarry Smith #include <petscsys.h> 345ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 346d382aafbSBarry Smith 347eca87e8dSBarry Smith Not Collective 348eca87e8dSBarry Smith 349d382aafbSBarry Smith Input Parameters: 350d382aafbSBarry Smith . cond - condition or expression 351d382aafbSBarry Smith 352d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 353d382aafbSBarry Smith branch is likely. 354d382aafbSBarry Smith 355d382aafbSBarry Smith Level: advanced 356d382aafbSBarry Smith 357d382aafbSBarry Smith .seealso: PetscUnlikely() 358d382aafbSBarry Smith M*/ 359d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 360d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 361d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 362d382aafbSBarry Smith #else 363cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 364cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 365d382aafbSBarry Smith #endif 366d382aafbSBarry Smith 367d382aafbSBarry Smith /* 368d382aafbSBarry Smith Declare extern C stuff after including external header files 369d382aafbSBarry Smith */ 370d382aafbSBarry Smith 371d382aafbSBarry Smith 372d382aafbSBarry Smith /* 373d382aafbSBarry Smith Basic PETSc constants 374d382aafbSBarry Smith */ 375d382aafbSBarry Smith 376d382aafbSBarry Smith /*E 377ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 378d382aafbSBarry Smith 379d382aafbSBarry Smith Level: beginner 380d382aafbSBarry Smith 381ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 38234e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 38334e82e7dSBarry Smith 384d382aafbSBarry Smith E*/ 385ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3866a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3875a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 38870b3c8c7SBarry Smith 3898b49ba18SBarry Smith /* 3908b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 3918b49ba18SBarry Smith */ 3928b49ba18SBarry Smith #include <petscmath.h> 3938b49ba18SBarry Smith 39470b3c8c7SBarry Smith /*E 39570b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 39670b3c8c7SBarry Smith 39770b3c8c7SBarry Smith Level: beginner 39870b3c8c7SBarry Smith 39970b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 40070b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 40170b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 40270b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 40370b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 40470b3c8c7SBarry Smith 40570b3c8c7SBarry Smith E*/ 40670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4076a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 408d382aafbSBarry Smith 409d382aafbSBarry Smith /*MC 410ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 411d382aafbSBarry Smith 412d382aafbSBarry Smith Level: beginner 413d382aafbSBarry Smith 414d382aafbSBarry Smith Note: Zero integer 415d382aafbSBarry Smith 416ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 417d382aafbSBarry Smith M*/ 418d382aafbSBarry Smith 419d382aafbSBarry Smith /*MC 420ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 421d382aafbSBarry Smith 422d382aafbSBarry Smith Level: beginner 423d382aafbSBarry Smith 424d382aafbSBarry Smith Note: Nonzero integer 425d382aafbSBarry Smith 426ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 427d382aafbSBarry Smith M*/ 428d382aafbSBarry Smith 429d382aafbSBarry Smith /*MC 4300298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 431d382aafbSBarry Smith 432d382aafbSBarry Smith Level: beginner 433d382aafbSBarry Smith 434d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 435d382aafbSBarry Smith some default 436d382aafbSBarry Smith 437d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 438503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 439d382aafbSBarry Smith 440d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 441d382aafbSBarry Smith 442d382aafbSBarry Smith M*/ 4433bcbec90SJed Brown #define PETSC_NULL NULL 444d382aafbSBarry Smith 445d382aafbSBarry Smith /*MC 4460298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 447d382aafbSBarry Smith 448d382aafbSBarry Smith Level: beginner 449d382aafbSBarry Smith 450d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 451d382aafbSBarry Smith some default 452d382aafbSBarry Smith 453d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 454d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 455d382aafbSBarry Smith 456d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 457d382aafbSBarry Smith 458d382aafbSBarry Smith M*/ 4590298fd71SBarry Smith #define PETSC_IGNORE NULL 460d382aafbSBarry Smith 461d382aafbSBarry Smith /*MC 462557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 463557d4da8SBarry Smith where you wish PETSc to use the default. 464557d4da8SBarry Smith 465557d4da8SBarry Smith Level: beginner 466557d4da8SBarry Smith 467557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 468557d4da8SBarry Smith 469557d4da8SBarry Smith M*/ 470557d4da8SBarry Smith #define PETSC_DECIDE -1 471557d4da8SBarry Smith 472557d4da8SBarry Smith /*MC 473d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 474d382aafbSBarry Smith where you wish PETSc to compute the required value. 475d382aafbSBarry Smith 476d382aafbSBarry Smith Level: beginner 477d382aafbSBarry Smith 478557d4da8SBarry Smith 479557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 480557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 481557d4da8SBarry Smith 4820298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 483d382aafbSBarry Smith 484d382aafbSBarry Smith M*/ 485d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 486d382aafbSBarry Smith 487d382aafbSBarry Smith /*MC 488557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 489557d4da8SBarry Smith where you wish PETSc to use the default. 490557d4da8SBarry Smith 491557d4da8SBarry Smith Level: beginner 492557d4da8SBarry Smith 4932d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 494557d4da8SBarry Smith 4950298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 496557d4da8SBarry Smith 497557d4da8SBarry Smith M*/ 498557d4da8SBarry Smith #define PETSC_DEFAULT -2 499557d4da8SBarry Smith 500557d4da8SBarry Smith /*MC 501d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 502d382aafbSBarry Smith all the processs that PETSc knows about. 503d382aafbSBarry Smith 504d382aafbSBarry Smith Level: beginner 505d382aafbSBarry Smith 506d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 507d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 508d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 509d382aafbSBarry Smith PetscInitialize() 510d382aafbSBarry Smith 511d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 512d382aafbSBarry Smith 513d382aafbSBarry Smith M*/ 514014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 515d382aafbSBarry Smith 516d382aafbSBarry Smith /*MC 517503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 518d382aafbSBarry Smith 519d382aafbSBarry Smith Level: beginner 520d382aafbSBarry Smith 521d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 522d382aafbSBarry Smith 523d382aafbSBarry Smith M*/ 524d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 525d382aafbSBarry Smith 526d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 527014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 528014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 529014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5304cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 531d382aafbSBarry Smith 532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 535d382aafbSBarry Smith 536d382aafbSBarry Smith /*MC 537d382aafbSBarry Smith PetscMalloc - Allocates memory 538d382aafbSBarry Smith 539eca87e8dSBarry Smith Synopsis: 540aaa7dc30SBarry Smith #include <petscsys.h> 541eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 542eca87e8dSBarry Smith 543eca87e8dSBarry Smith Not Collective 544eca87e8dSBarry Smith 545d382aafbSBarry Smith Input Parameter: 546d382aafbSBarry Smith . m - number of bytes to allocate 547d382aafbSBarry Smith 548d382aafbSBarry Smith Output Parameter: 549d382aafbSBarry Smith . result - memory allocated 550d382aafbSBarry Smith 551d382aafbSBarry Smith Level: beginner 552d382aafbSBarry Smith 55349d7da52SJed Brown Notes: 55449d7da52SJed Brown Memory is always allocated at least double aligned 555d382aafbSBarry Smith 55649d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 557d382aafbSBarry Smith 558d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 559d382aafbSBarry Smith 560d382aafbSBarry Smith Concepts: memory allocation 561d382aafbSBarry Smith 562d382aafbSBarry Smith M*/ 56349d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 564d382aafbSBarry Smith 565d382aafbSBarry Smith /*MC 566503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 567d382aafbSBarry Smith 568d382aafbSBarry Smith Synopsis: 569aaa7dc30SBarry Smith #include <petscsys.h> 570d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 571d382aafbSBarry Smith 572eca87e8dSBarry Smith Not Collective 573eca87e8dSBarry Smith 574eca87e8dSBarry Smith Input Parameters: 575eca87e8dSBarry Smith . addr - address to align (any pointer type) 576eca87e8dSBarry Smith 577d382aafbSBarry Smith Level: developer 578d382aafbSBarry Smith 579d382aafbSBarry Smith .seealso: PetscMallocAlign() 580d382aafbSBarry Smith 581d382aafbSBarry Smith Concepts: memory allocation 582d382aafbSBarry Smith M*/ 583d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 584d382aafbSBarry Smith 585d382aafbSBarry Smith /*MC 586785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 587d382aafbSBarry Smith 588eca87e8dSBarry Smith Synopsis: 589aaa7dc30SBarry Smith #include <petscsys.h> 590785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 591785e854fSJed Brown 592785e854fSJed Brown Not Collective 593785e854fSJed Brown 594785e854fSJed Brown Input Parameter: 595785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 596785e854fSJed Brown 597785e854fSJed Brown Output Parameter: 598785e854fSJed Brown . r1 - memory allocated in first chunk 599785e854fSJed Brown 600785e854fSJed Brown Level: developer 601785e854fSJed Brown 6021795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 603785e854fSJed Brown 604785e854fSJed Brown Concepts: memory allocation 605785e854fSJed Brown 606785e854fSJed Brown M*/ 607e1287589SMatthew G. Knepley #define PetscMalloc1(m1,r1) ((m1) ? PetscMalloc((m1)*sizeof(**(r1)),r1) : (*(r1) = 0,0)) 608785e854fSJed Brown 609785e854fSJed Brown /*MC 6101795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6111795a4d1SJed Brown 6121795a4d1SJed Brown Synopsis: 613aaa7dc30SBarry Smith #include <petscsys.h> 6141795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6151795a4d1SJed Brown 6161795a4d1SJed Brown Not Collective 6171795a4d1SJed Brown 6181795a4d1SJed Brown Input Parameter: 6191795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6201795a4d1SJed Brown 6211795a4d1SJed Brown Output Parameter: 6221795a4d1SJed Brown . r1 - memory allocated in first chunk 6231795a4d1SJed Brown 6241795a4d1SJed Brown Level: developer 6251795a4d1SJed Brown 6261795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6271795a4d1SJed Brown 6281795a4d1SJed Brown Concepts: memory allocation 6291795a4d1SJed Brown 6301795a4d1SJed Brown M*/ 6311795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6321795a4d1SJed Brown 6331795a4d1SJed Brown /*MC 634dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 635d382aafbSBarry Smith 636eca87e8dSBarry Smith Synopsis: 637aaa7dc30SBarry Smith #include <petscsys.h> 638dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 639eca87e8dSBarry Smith 640eca87e8dSBarry Smith Not Collective 641eca87e8dSBarry Smith 642d382aafbSBarry Smith Input Parameter: 643d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 644dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 645d382aafbSBarry Smith 646d382aafbSBarry Smith Output Parameter: 647d382aafbSBarry Smith + r1 - memory allocated in first chunk 648d382aafbSBarry Smith - r2 - memory allocated in second chunk 649d382aafbSBarry Smith 650d382aafbSBarry Smith Level: developer 651d382aafbSBarry Smith 6521795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 653d382aafbSBarry Smith 654d382aafbSBarry Smith Concepts: memory allocation 655d382aafbSBarry Smith 656d382aafbSBarry Smith M*/ 65720a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6581d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 659d382aafbSBarry Smith #else 660ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 661ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6623589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 663d382aafbSBarry Smith #endif 664d382aafbSBarry Smith 665d382aafbSBarry Smith /*MC 6661795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 667d382aafbSBarry Smith 668eca87e8dSBarry Smith Synopsis: 669aaa7dc30SBarry Smith #include <petscsys.h> 6701795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 671eca87e8dSBarry Smith 672eca87e8dSBarry Smith Not Collective 673eca87e8dSBarry Smith 674d382aafbSBarry Smith Input Parameter: 675d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6761795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6771795a4d1SJed Brown 6781795a4d1SJed Brown Output Parameter: 6791795a4d1SJed Brown + r1 - memory allocated in first chunk 6801795a4d1SJed Brown - r2 - memory allocated in second chunk 6811795a4d1SJed Brown 6821795a4d1SJed Brown Level: developer 6831795a4d1SJed Brown 6841795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 6851795a4d1SJed Brown 6861795a4d1SJed Brown Concepts: memory allocation 6871795a4d1SJed Brown M*/ 6881795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 6891795a4d1SJed Brown 6901795a4d1SJed Brown /*MC 691dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 692d382aafbSBarry Smith 693d382aafbSBarry Smith Synopsis: 694aaa7dc30SBarry Smith #include <petscsys.h> 695dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 696d382aafbSBarry Smith 697d382aafbSBarry Smith Not Collective 698d382aafbSBarry Smith 699d382aafbSBarry Smith Input Parameter: 700d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 701d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 702dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 703d382aafbSBarry Smith 704d382aafbSBarry Smith Output Parameter: 705d382aafbSBarry Smith + r1 - memory allocated in first chunk 706d382aafbSBarry Smith . r2 - memory allocated in second chunk 707d382aafbSBarry Smith - r3 - memory allocated in third chunk 708d382aafbSBarry Smith 709d382aafbSBarry Smith Level: developer 710d382aafbSBarry Smith 7111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 712d382aafbSBarry Smith 713d382aafbSBarry Smith Concepts: memory allocation 714d382aafbSBarry Smith 715d382aafbSBarry Smith M*/ 71620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7171d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 718d382aafbSBarry Smith #else 719ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 720278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7213589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 722d382aafbSBarry Smith #endif 723d382aafbSBarry Smith 724d382aafbSBarry Smith /*MC 7251795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 726d382aafbSBarry Smith 727eca87e8dSBarry Smith Synopsis: 728aaa7dc30SBarry Smith #include <petscsys.h> 7291795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 730eca87e8dSBarry Smith 731eca87e8dSBarry Smith Not Collective 732eca87e8dSBarry Smith 733d382aafbSBarry Smith Input Parameter: 734d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 735d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7361795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7371795a4d1SJed Brown 7381795a4d1SJed Brown Output Parameter: 7391795a4d1SJed Brown + r1 - memory allocated in first chunk 7401795a4d1SJed Brown . r2 - memory allocated in second chunk 7411795a4d1SJed Brown - r3 - memory allocated in third chunk 7421795a4d1SJed Brown 7431795a4d1SJed Brown Level: developer 7441795a4d1SJed Brown 7451795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7461795a4d1SJed Brown 7471795a4d1SJed Brown Concepts: memory allocation 7481795a4d1SJed Brown M*/ 7491795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7501795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7511795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7521795a4d1SJed Brown 7531795a4d1SJed Brown /*MC 754dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 755d382aafbSBarry Smith 756d382aafbSBarry Smith Synopsis: 757aaa7dc30SBarry Smith #include <petscsys.h> 758dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 759d382aafbSBarry Smith 760d382aafbSBarry Smith Not Collective 761d382aafbSBarry Smith 762d382aafbSBarry Smith Input Parameter: 763d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 764d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 765d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 766dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 767d382aafbSBarry Smith 768d382aafbSBarry Smith Output Parameter: 769d382aafbSBarry Smith + r1 - memory allocated in first chunk 770d382aafbSBarry Smith . r2 - memory allocated in second chunk 771d382aafbSBarry Smith . r3 - memory allocated in third chunk 772d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 773d382aafbSBarry Smith 774d382aafbSBarry Smith Level: developer 775d382aafbSBarry Smith 7761795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 777d382aafbSBarry Smith 778d382aafbSBarry Smith Concepts: memory allocation 779d382aafbSBarry Smith 780d382aafbSBarry Smith M*/ 78120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7821d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 783d382aafbSBarry Smith #else 784dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 785ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 786278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 7873589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 788d382aafbSBarry Smith #endif 789d382aafbSBarry Smith 790d382aafbSBarry Smith /*MC 7911795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 792d382aafbSBarry Smith 793eca87e8dSBarry Smith Synopsis: 794aaa7dc30SBarry Smith #include <petscsys.h> 7951795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 796eca87e8dSBarry Smith 797eca87e8dSBarry Smith Not Collective 798eca87e8dSBarry Smith 799d382aafbSBarry Smith Input Parameter: 800d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 801d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 802d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8031795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8041795a4d1SJed Brown 8051795a4d1SJed Brown Output Parameter: 8061795a4d1SJed Brown + r1 - memory allocated in first chunk 8071795a4d1SJed Brown . r2 - memory allocated in second chunk 8081795a4d1SJed Brown . r3 - memory allocated in third chunk 8091795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8101795a4d1SJed Brown 8111795a4d1SJed Brown Level: developer 8121795a4d1SJed Brown 8131795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8141795a4d1SJed Brown 8151795a4d1SJed Brown Concepts: memory allocation 8161795a4d1SJed Brown 8171795a4d1SJed Brown M*/ 8181795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8191795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8201795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8211795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8221795a4d1SJed Brown 8231795a4d1SJed Brown /*MC 824dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 825d382aafbSBarry Smith 826d382aafbSBarry Smith Synopsis: 827aaa7dc30SBarry Smith #include <petscsys.h> 828dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 829d382aafbSBarry Smith 830d382aafbSBarry Smith Not Collective 831d382aafbSBarry Smith 832d382aafbSBarry Smith Input Parameter: 833d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 834d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 835d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 836d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 837dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 838d382aafbSBarry Smith 839d382aafbSBarry Smith Output Parameter: 840d382aafbSBarry Smith + r1 - memory allocated in first chunk 841d382aafbSBarry Smith . r2 - memory allocated in second chunk 842d382aafbSBarry Smith . r3 - memory allocated in third chunk 843d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 844d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 845d382aafbSBarry Smith 846d382aafbSBarry Smith Level: developer 847d382aafbSBarry Smith 8481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 849d382aafbSBarry Smith 850d382aafbSBarry Smith Concepts: memory allocation 851d382aafbSBarry Smith 852d382aafbSBarry Smith M*/ 85320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8541d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 855d382aafbSBarry Smith #else 856dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 857ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 858278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8593589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 860d382aafbSBarry Smith #endif 861d382aafbSBarry Smith 862d382aafbSBarry Smith /*MC 8631795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 864d382aafbSBarry Smith 865eca87e8dSBarry Smith Synopsis: 866aaa7dc30SBarry Smith #include <petscsys.h> 8671795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 868eca87e8dSBarry Smith 869eca87e8dSBarry Smith Not Collective 870eca87e8dSBarry Smith 871d382aafbSBarry Smith Input Parameter: 872d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 873d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 874d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 875d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 8761795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8771795a4d1SJed Brown 8781795a4d1SJed Brown Output Parameter: 8791795a4d1SJed Brown + r1 - memory allocated in first chunk 8801795a4d1SJed Brown . r2 - memory allocated in second chunk 8811795a4d1SJed Brown . r3 - memory allocated in third chunk 8821795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8831795a4d1SJed Brown - r5 - memory allocated in fifth chunk 8841795a4d1SJed Brown 8851795a4d1SJed Brown Level: developer 8861795a4d1SJed Brown 8871795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 8881795a4d1SJed Brown 8891795a4d1SJed Brown Concepts: memory allocation 8901795a4d1SJed Brown 8911795a4d1SJed Brown M*/ 8921795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8931795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8941795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8951795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 896d382aafbSBarry Smith 897d382aafbSBarry Smith /*MC 898dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 899d382aafbSBarry Smith 900d382aafbSBarry Smith Synopsis: 901aaa7dc30SBarry Smith #include <petscsys.h> 902dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 903d382aafbSBarry Smith 904d382aafbSBarry Smith Not Collective 905d382aafbSBarry Smith 906d382aafbSBarry Smith Input Parameter: 907d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 908d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 909d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 910d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 911d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 912dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 913d382aafbSBarry Smith 914d382aafbSBarry Smith Output Parameter: 915d382aafbSBarry Smith + r1 - memory allocated in first chunk 916d382aafbSBarry Smith . r2 - memory allocated in second chunk 917d382aafbSBarry Smith . r3 - memory allocated in third chunk 918d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 919d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 920d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 921d382aafbSBarry Smith 922d382aafbSBarry Smith Level: developer 923d382aafbSBarry Smith 9241795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 925d382aafbSBarry Smith 926d382aafbSBarry Smith Concepts: memory allocation 927d382aafbSBarry Smith 928d382aafbSBarry Smith M*/ 92920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9301d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 931d382aafbSBarry Smith #else 932dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 933ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 934278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9353589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 936d382aafbSBarry Smith #endif 937d382aafbSBarry Smith 938d382aafbSBarry Smith /*MC 9391795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 940d382aafbSBarry Smith 941eca87e8dSBarry Smith Synopsis: 942aaa7dc30SBarry Smith #include <petscsys.h> 9431795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 944eca87e8dSBarry Smith 945eca87e8dSBarry Smith Not Collective 946eca87e8dSBarry Smith 947d382aafbSBarry Smith Input Parameter: 948d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 949d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 950d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 951d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 952d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9531795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9541795a4d1SJed Brown 9551795a4d1SJed Brown Output Parameter: 9561795a4d1SJed Brown + r1 - memory allocated in first chunk 9571795a4d1SJed Brown . r2 - memory allocated in second chunk 9581795a4d1SJed Brown . r3 - memory allocated in third chunk 9591795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9601795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9611795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9621795a4d1SJed Brown 9631795a4d1SJed Brown Level: developer 9641795a4d1SJed Brown 9651795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9661795a4d1SJed Brown 9671795a4d1SJed Brown Concepts: memory allocation 9681795a4d1SJed Brown M*/ 9691795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9701795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9711795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9721795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9731795a4d1SJed Brown 9741795a4d1SJed Brown /*MC 975dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 976d382aafbSBarry Smith 977d382aafbSBarry Smith Synopsis: 978aaa7dc30SBarry Smith #include <petscsys.h> 979dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 980d382aafbSBarry Smith 981d382aafbSBarry Smith Not Collective 982d382aafbSBarry Smith 983d382aafbSBarry Smith Input Parameter: 984d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 985d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 986d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 987d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 988d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 989d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 990dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 991d382aafbSBarry Smith 992d382aafbSBarry Smith Output Parameter: 993d382aafbSBarry Smith + r1 - memory allocated in first chunk 994d382aafbSBarry Smith . r2 - memory allocated in second chunk 995d382aafbSBarry Smith . r3 - memory allocated in third chunk 996d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 997d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 998d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 999eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1000d382aafbSBarry Smith 1001d382aafbSBarry Smith Level: developer 1002d382aafbSBarry Smith 10031795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1004d382aafbSBarry Smith 1005d382aafbSBarry Smith Concepts: memory allocation 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith M*/ 100820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10091d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1010d382aafbSBarry Smith #else 1011dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1012ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1013278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10143589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1015d382aafbSBarry Smith #endif 1016d382aafbSBarry Smith 1017d382aafbSBarry Smith /*MC 10181795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10191795a4d1SJed Brown 10201795a4d1SJed Brown Synopsis: 1021aaa7dc30SBarry Smith #include <petscsys.h> 10221795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10231795a4d1SJed Brown 10241795a4d1SJed Brown Not Collective 10251795a4d1SJed Brown 10261795a4d1SJed Brown Input Parameter: 10271795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10281795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10291795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10301795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10311795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10321795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10331795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10341795a4d1SJed Brown 10351795a4d1SJed Brown Output Parameter: 10361795a4d1SJed Brown + r1 - memory allocated in first chunk 10371795a4d1SJed Brown . r2 - memory allocated in second chunk 10381795a4d1SJed Brown . r3 - memory allocated in third chunk 10391795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10401795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10411795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10421795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10431795a4d1SJed Brown 10441795a4d1SJed Brown Level: developer 10451795a4d1SJed Brown 10461795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10471795a4d1SJed Brown 10481795a4d1SJed Brown Concepts: memory allocation 10491795a4d1SJed Brown M*/ 10501795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10517ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10521795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10531795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10547ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10551795a4d1SJed Brown 10561795a4d1SJed Brown /*MC 1057503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1058d382aafbSBarry Smith 1059eca87e8dSBarry Smith Synopsis: 1060aaa7dc30SBarry Smith #include <petscsys.h> 1061b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1062eca87e8dSBarry Smith 1063eca87e8dSBarry Smith Not Collective 1064eca87e8dSBarry Smith 1065d382aafbSBarry Smith Output Parameter: 1066b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1067d382aafbSBarry Smith 1068d382aafbSBarry Smith Level: beginner 1069d382aafbSBarry Smith 1070ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith Concepts: memory allocation 1073d382aafbSBarry Smith 1074d382aafbSBarry Smith M*/ 1075b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1076ad0619ddSBarry Smith 1077ad0619ddSBarry Smith /*MC 1078b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1079ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1080ad0619ddSBarry Smith 1081ad0619ddSBarry Smith Synopsis: 1082aaa7dc30SBarry Smith #include <petscsys.h> 1083b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1084ad0619ddSBarry Smith 1085ad0619ddSBarry Smith Not Collective 1086ad0619ddSBarry Smith 1087ad0619ddSBarry Smith Input Parameter: 1088b00a9115SJed Brown . obj - object memory is logged to 1089ad0619ddSBarry Smith 1090ad0619ddSBarry Smith Output Parameter: 1091b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1092ad0619ddSBarry Smith 1093ad0619ddSBarry Smith Level: developer 1094ad0619ddSBarry Smith 1095ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1096ad0619ddSBarry Smith 1097ad0619ddSBarry Smith Concepts: memory allocation 1098ad0619ddSBarry Smith 1099ad0619ddSBarry Smith M*/ 1100b00a9115SJed Brown #define PetscNewLog(o,b) (PetscNew((b)) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(**(b))) : 0)) 1101d382aafbSBarry Smith 1102d382aafbSBarry Smith /*MC 1103d382aafbSBarry Smith PetscFree - Frees memory 1104d382aafbSBarry Smith 1105eca87e8dSBarry Smith Synopsis: 1106aaa7dc30SBarry Smith #include <petscsys.h> 1107eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1108eca87e8dSBarry Smith 1109eca87e8dSBarry Smith Not Collective 1110eca87e8dSBarry Smith 1111d382aafbSBarry Smith Input Parameter: 1112d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1113d382aafbSBarry Smith 1114d382aafbSBarry Smith Level: beginner 1115d382aafbSBarry Smith 111649d7da52SJed Brown Notes: 111749d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 111849d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1119d382aafbSBarry Smith 1120d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1121d382aafbSBarry Smith 1122d382aafbSBarry Smith Concepts: memory allocation 1123d382aafbSBarry Smith 1124d382aafbSBarry Smith M*/ 112549d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1126d382aafbSBarry Smith 1127d382aafbSBarry Smith /*MC 1128d382aafbSBarry Smith PetscFreeVoid - Frees memory 1129d382aafbSBarry Smith 1130d382aafbSBarry Smith Synopsis: 1131aaa7dc30SBarry Smith #include <petscsys.h> 1132d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1133d382aafbSBarry Smith 1134eca87e8dSBarry Smith Not Collective 1135eca87e8dSBarry Smith 1136eca87e8dSBarry Smith Input Parameter: 1137eca87e8dSBarry Smith . memory - memory to free 1138eca87e8dSBarry Smith 1139d382aafbSBarry Smith Level: beginner 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1142d382aafbSBarry Smith 1143d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith Concepts: memory allocation 1146d382aafbSBarry Smith 1147d382aafbSBarry Smith M*/ 1148efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1149d382aafbSBarry Smith 1150d382aafbSBarry Smith 1151d382aafbSBarry Smith /*MC 1152d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1153d382aafbSBarry Smith 1154eca87e8dSBarry Smith Synopsis: 1155aaa7dc30SBarry Smith #include <petscsys.h> 1156eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1157eca87e8dSBarry Smith 1158eca87e8dSBarry Smith Not Collective 1159eca87e8dSBarry Smith 1160d382aafbSBarry Smith Input Parameter: 1161d382aafbSBarry Smith + memory1 - memory to free 1162d382aafbSBarry Smith - memory2 - 2nd memory to free 1163d382aafbSBarry Smith 1164d382aafbSBarry Smith Level: developer 1165d382aafbSBarry Smith 1166d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1167d382aafbSBarry Smith 1168d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1169d382aafbSBarry Smith 1170d382aafbSBarry Smith Concepts: memory allocation 1171d382aafbSBarry Smith 1172d382aafbSBarry Smith M*/ 1173b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1174d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1175d382aafbSBarry Smith #else 1176e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1177d382aafbSBarry Smith #endif 1178d382aafbSBarry Smith 1179d382aafbSBarry Smith /*MC 1180d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1181d382aafbSBarry Smith 1182eca87e8dSBarry Smith Synopsis: 1183aaa7dc30SBarry Smith #include <petscsys.h> 1184eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1185eca87e8dSBarry Smith 1186eca87e8dSBarry Smith Not Collective 1187eca87e8dSBarry Smith 1188d382aafbSBarry Smith Input Parameter: 1189d382aafbSBarry Smith + memory1 - memory to free 1190d382aafbSBarry Smith . memory2 - 2nd memory to free 1191d382aafbSBarry Smith - memory3 - 3rd memory to free 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith Level: developer 1194d382aafbSBarry Smith 1195d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith Concepts: memory allocation 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith M*/ 1202b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1203d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1204d382aafbSBarry Smith #else 1205e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1206d382aafbSBarry Smith #endif 1207d382aafbSBarry Smith 1208d382aafbSBarry Smith /*MC 1209d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1210d382aafbSBarry Smith 1211eca87e8dSBarry Smith Synopsis: 1212aaa7dc30SBarry Smith #include <petscsys.h> 1213eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1214eca87e8dSBarry Smith 1215eca87e8dSBarry Smith Not Collective 1216eca87e8dSBarry Smith 1217d382aafbSBarry Smith Input Parameter: 1218d382aafbSBarry Smith + m1 - memory to free 1219d382aafbSBarry Smith . m2 - 2nd memory to free 1220d382aafbSBarry Smith . m3 - 3rd memory to free 1221d382aafbSBarry Smith - m4 - 4th memory to free 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Level: developer 1224d382aafbSBarry Smith 1225d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith Concepts: memory allocation 1230d382aafbSBarry Smith 1231d382aafbSBarry Smith M*/ 1232b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1233d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1234d382aafbSBarry Smith #else 1235e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1236d382aafbSBarry Smith #endif 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith /*MC 1239d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1240d382aafbSBarry Smith 1241eca87e8dSBarry Smith Synopsis: 1242aaa7dc30SBarry Smith #include <petscsys.h> 1243eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1244eca87e8dSBarry Smith 1245eca87e8dSBarry Smith Not Collective 1246eca87e8dSBarry Smith 1247d382aafbSBarry Smith Input Parameter: 1248d382aafbSBarry Smith + m1 - memory to free 1249d382aafbSBarry Smith . m2 - 2nd memory to free 1250d382aafbSBarry Smith . m3 - 3rd memory to free 1251d382aafbSBarry Smith . m4 - 4th memory to free 1252d382aafbSBarry Smith - m5 - 5th memory to free 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith Level: developer 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith Concepts: memory allocation 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith M*/ 1263b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1264d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1265d382aafbSBarry Smith #else 1266e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1267e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1268d382aafbSBarry Smith #endif 1269d382aafbSBarry Smith 1270d382aafbSBarry Smith 1271d382aafbSBarry Smith /*MC 1272d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1273d382aafbSBarry Smith 1274eca87e8dSBarry Smith Synopsis: 1275aaa7dc30SBarry Smith #include <petscsys.h> 1276eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1277eca87e8dSBarry Smith 1278eca87e8dSBarry Smith Not Collective 1279eca87e8dSBarry Smith 1280d382aafbSBarry Smith Input Parameter: 1281d382aafbSBarry Smith + m1 - memory to free 1282d382aafbSBarry Smith . m2 - 2nd memory to free 1283d382aafbSBarry Smith . m3 - 3rd memory to free 1284d382aafbSBarry Smith . m4 - 4th memory to free 1285d382aafbSBarry Smith . m5 - 5th memory to free 1286d382aafbSBarry Smith - m6 - 6th memory to free 1287d382aafbSBarry Smith 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith Level: developer 1290d382aafbSBarry Smith 1291d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1294d382aafbSBarry Smith 1295d382aafbSBarry Smith Concepts: memory allocation 1296d382aafbSBarry Smith 1297d382aafbSBarry Smith M*/ 1298b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1299d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1300d382aafbSBarry Smith #else 1301e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1302e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1303e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1304d382aafbSBarry Smith #endif 1305d382aafbSBarry Smith 1306d382aafbSBarry Smith /*MC 1307d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1308d382aafbSBarry Smith 1309eca87e8dSBarry Smith Synopsis: 1310aaa7dc30SBarry Smith #include <petscsys.h> 1311eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1312eca87e8dSBarry Smith 1313eca87e8dSBarry Smith Not Collective 1314eca87e8dSBarry Smith 1315d382aafbSBarry Smith Input Parameter: 1316d382aafbSBarry Smith + m1 - memory to free 1317d382aafbSBarry Smith . m2 - 2nd memory to free 1318d382aafbSBarry Smith . m3 - 3rd memory to free 1319d382aafbSBarry Smith . m4 - 4th memory to free 1320d382aafbSBarry Smith . m5 - 5th memory to free 1321d382aafbSBarry Smith . m6 - 6th memory to free 1322d382aafbSBarry Smith - m7 - 7th memory to free 1323d382aafbSBarry Smith 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith Level: developer 1326d382aafbSBarry Smith 1327d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1328d382aafbSBarry Smith 1329d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1330d382aafbSBarry Smith PetscMalloc7() 1331d382aafbSBarry Smith 1332d382aafbSBarry Smith Concepts: memory allocation 1333d382aafbSBarry Smith 1334d382aafbSBarry Smith M*/ 1335b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1336d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1337d382aafbSBarry Smith #else 1338e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1339e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 134006c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1341e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1342d382aafbSBarry Smith #endif 1343d382aafbSBarry Smith 1344efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1345efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1346efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1348d382aafbSBarry Smith 1349d382aafbSBarry Smith /* 1350a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1351a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1352a5057860SBarry Smith timing etc. 1353a5057860SBarry Smith */ 1354a5057860SBarry Smith typedef double PetscLogDouble; 1355a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1356a5057860SBarry Smith 1357a5057860SBarry Smith /* 135866d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1359d382aafbSBarry Smith */ 1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13650acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1366efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1368574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1370d382aafbSBarry Smith 1371d382aafbSBarry Smith /*E 1372d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1373d382aafbSBarry Smith 1374d382aafbSBarry Smith Level: beginner 1375d382aafbSBarry Smith 1376d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1377d382aafbSBarry Smith 1378d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1379d382aafbSBarry Smith PetscDataTypeGetSize() 1380d382aafbSBarry Smith 1381d382aafbSBarry Smith E*/ 1382d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13837e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 13846a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1385d382aafbSBarry Smith 1386d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1387d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1388d382aafbSBarry Smith #else 1389ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1390d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 139159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 139259a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1393d382aafbSBarry Smith #else 1394d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1395d382aafbSBarry Smith #endif 1396d382aafbSBarry Smith #endif 1397ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1398d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 139959a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 140059a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1401d382aafbSBarry Smith #else 1402d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1403d382aafbSBarry Smith #endif 1404d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1405d382aafbSBarry Smith 1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14098e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1410d382aafbSBarry Smith 1411d382aafbSBarry Smith /* 1412d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1413d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1414d382aafbSBarry Smith functionality and/or error checking. 1415d382aafbSBarry Smith */ 1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1420d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14322f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14372c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 144047340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14416fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1443d382aafbSBarry Smith 1444573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1445573b0fb4SBarry Smith 1446d382aafbSBarry Smith /*S 1447d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1448d382aafbSBarry Smith 1449d382aafbSBarry Smith Level: intermediate 1450d382aafbSBarry Smith 1451d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1452d382aafbSBarry Smith S*/ 1453d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1454d382aafbSBarry Smith 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1458d382aafbSBarry Smith 1459a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1460a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1461a53986e1SJed Brown 1462d382aafbSBarry Smith /* 1463d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1464d382aafbSBarry Smith */ 1465014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14667c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1467014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14682414b3c7SJed Brown #else 14692414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14702414b3c7SJed Brown #endif 14712414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1472014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1473014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1474d9822059SBarry Smith #else 1475d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1476d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1477d9822059SBarry Smith #endif 1478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1479d382aafbSBarry Smith 1480014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1481014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1482eb3f98d2SBarry Smith 1483d382aafbSBarry Smith /*S 1484d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1485d382aafbSBarry Smith 1486d382aafbSBarry Smith Level: beginner 1487d382aafbSBarry Smith 14882981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1489d382aafbSBarry Smith 14901890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1491d382aafbSBarry Smith S*/ 1492d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1493d382aafbSBarry Smith 1494270bf2e7SJed Brown /*MC 1495127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1496127c8a3bSJed Brown 1497127c8a3bSJed Brown Level: developer 1498127c8a3bSJed Brown 1499127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1500127c8a3bSJed Brown 1501127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1502127c8a3bSJed Brown M*/ 1503127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1504127c8a3bSJed Brown 1505127c8a3bSJed Brown /*MC 1506270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1507270bf2e7SJed Brown 1508270bf2e7SJed Brown Level: developer 1509270bf2e7SJed Brown 1510270bf2e7SJed Brown Notes: 1511270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1512270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1513270bf2e7SJed Brown 15148dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1515270bf2e7SJed Brown M*/ 1516270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1517270bf2e7SJed Brown 1518d382aafbSBarry Smith /*S 1519140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1520d382aafbSBarry Smith by string name 1521d382aafbSBarry Smith 1522d382aafbSBarry Smith Level: advanced 1523d382aafbSBarry Smith 1524140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1525d382aafbSBarry Smith S*/ 1526140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1527d382aafbSBarry Smith 1528d382aafbSBarry Smith /*E 1529d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1530d382aafbSBarry Smith 1531d382aafbSBarry Smith Level: beginner 1532d382aafbSBarry Smith 1533d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1534d382aafbSBarry Smith 1535d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1536d382aafbSBarry Smith 1537d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1538d382aafbSBarry Smith 1539d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1540d382aafbSBarry Smith 1541d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1542d382aafbSBarry Smith 1543d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1544d382aafbSBarry Smith E*/ 1545d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1546d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1547d6a4318aSJed Brown 1548639ff905SBarry Smith /* 1549639ff905SBarry Smith Defines PETSc error handling. 1550639ff905SBarry Smith */ 1551639ff905SBarry Smith #include <petscerror.h> 1552d382aafbSBarry Smith 15530700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1554014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1555014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1557d382aafbSBarry Smith 1558d382aafbSBarry Smith /* 1559d382aafbSBarry Smith Routines that get memory usage information from the OS 1560d382aafbSBarry Smith */ 1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1564b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1565d382aafbSBarry Smith 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1568d382aafbSBarry Smith 1569d382aafbSBarry Smith /* 1570d382aafbSBarry Smith Initialization of PETSc 1571d382aafbSBarry Smith */ 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1582d382aafbSBarry Smith 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1584607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1585d382aafbSBarry Smith 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1590d382aafbSBarry Smith 1591d382aafbSBarry Smith /* 1592d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15932981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1594d382aafbSBarry Smith */ 1595638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1596638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1597638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1598d382aafbSBarry Smith 1599d382aafbSBarry Smith /* 1600d382aafbSBarry Smith Functions that can act on any PETSc object. 1601d382aafbSBarry Smith */ 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1621bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1622bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1630d382aafbSBarry Smith 1631665c2dedSJed Brown #include <petscviewertypes.h> 1632639ff905SBarry Smith #include <petscoptions.h> 1633639ff905SBarry Smith 1634639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1635dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1636639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16370005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16380005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1646ce1779c8SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,const char[],const char[]); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1652d382aafbSBarry Smith 1653e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16547aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1655e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1656e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1657e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1658e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1659e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1660e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1661e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1662e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1663e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 166415681b3cSBarry Smith 1665ec7429eaSBarry Smith #else 16667aab2a10SBarry Smith #define PetscSAWsBlock() 0 1667e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1668e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1669e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1670e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1671e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1672e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1673e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1674e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1675e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 167615681b3cSBarry Smith 1677ec7429eaSBarry Smith #endif 1678b90c6cbeSBarry Smith 16797d5d4d99SBarry Smith typedef void* PetscDLHandle; 1680e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 168182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 168282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 168382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16847d5d4d99SBarry Smith 1685d382aafbSBarry Smith 16865fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1687a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16885fe58b6fSBarry Smith #endif 16897eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1690a64a8e02SBarry Smith 1691d382aafbSBarry Smith /*S 1692140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1693d382aafbSBarry Smith 16941d0fab5eSBarry Smith Level: developer 1695d382aafbSBarry Smith 16961d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16971d0fab5eSBarry Smith 1698140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1699d382aafbSBarry Smith S*/ 1700140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1701d382aafbSBarry Smith 1702140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1703140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1704140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1705140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1706140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1707140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1708d382aafbSBarry Smith 1709d382aafbSBarry Smith /* 1710503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1711d382aafbSBarry Smith link libraries that will be loaded as needed. 1712d382aafbSBarry Smith */ 1713a240a19fSJed Brown 1714a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1715a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1716140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17171c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17181c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1719140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1720140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1721140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1722140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1723d382aafbSBarry Smith 1724d382aafbSBarry Smith /*S 1725d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1726d382aafbSBarry Smith 1727d382aafbSBarry Smith Level: advanced 1728d382aafbSBarry Smith 1729d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1730d382aafbSBarry Smith S*/ 1731d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1732014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1733014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1740d382aafbSBarry Smith 1741d382aafbSBarry Smith /* 1742d382aafbSBarry Smith Useful utility routines 1743d382aafbSBarry Smith */ 1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1750d382aafbSBarry Smith 1751503cfb0cSBarry Smith /* 1752ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1753503cfb0cSBarry Smith 1754503cfb0cSBarry Smith Notes: This is useful in cases like 1755503cfb0cSBarry Smith $ int *a; 1756ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1757ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1758503cfb0cSBarry Smith */ 1759d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1760503cfb0cSBarry Smith 1761cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1762cae2f346SBarry Smith # include <valgrind/valgrind.h> 1763cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1764cae2f346SBarry Smith #else 1765cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1766cae2f346SBarry Smith #endif 1767cae2f346SBarry Smith 1768238ccf28SShri Abhyankar 1769d382aafbSBarry Smith /*MC 1770d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1771d382aafbSBarry Smith 1772d382aafbSBarry Smith Synopsis: 1773aaa7dc30SBarry Smith #include <petscsys.h> 1774d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1775d382aafbSBarry Smith 1776eca87e8dSBarry Smith Not Collective 1777eca87e8dSBarry Smith 1778d382aafbSBarry Smith Input Parameters: 1779d382aafbSBarry Smith . format - the usual printf() format string 1780d382aafbSBarry Smith 1781d382aafbSBarry Smith Level: developer 1782d382aafbSBarry Smith 1783d382aafbSBarry Smith Fortran Note: 1784d382aafbSBarry Smith This routine is not supported in Fortran. 1785d382aafbSBarry Smith 1786d382aafbSBarry Smith Concepts: help messages^printing 1787d382aafbSBarry Smith Concepts: printing^help messages 1788d382aafbSBarry Smith 1789d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1790d382aafbSBarry Smith M*/ 1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1792d382aafbSBarry Smith 1793fcfd50ebSBarry Smith /* 1794fcfd50ebSBarry Smith Defines PETSc profiling. 1795fcfd50ebSBarry Smith */ 17962c8e378dSBarry Smith #include <petsclog.h> 1797fcfd50ebSBarry Smith 1798b90c6cbeSBarry Smith 1799fcfd50ebSBarry Smith 1800fcfd50ebSBarry Smith /* 1801fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1802fcfd50ebSBarry Smith */ 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1805014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1810fcfd50ebSBarry Smith 1811fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1812fcfd50ebSBarry Smith #include <stdarg.h> 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1816fcfd50ebSBarry Smith 1817fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1819fcfd50ebSBarry Smith #endif 1820fcfd50ebSBarry Smith 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1824d382aafbSBarry Smith 1825d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 182796a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 182874ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1829d382aafbSBarry Smith #endif 1830d382aafbSBarry Smith 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18330ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1838d382aafbSBarry Smith 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1840d382aafbSBarry Smith 1841d382aafbSBarry Smith /*S 1842d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1843d382aafbSBarry Smith 1844d382aafbSBarry Smith Level: advanced 1845d382aafbSBarry Smith 1846d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1847d382aafbSBarry Smith S*/ 1848014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1849d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1855d382aafbSBarry Smith 1856d382aafbSBarry Smith /* 1857d382aafbSBarry Smith For use in debuggers 1858d382aafbSBarry Smith */ 1859014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1860014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1864d382aafbSBarry Smith 1865a663daf8SBarry Smith #include <stddef.h> 1866a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1867d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1868d382aafbSBarry Smith #include <stdlib.h> 1869d382aafbSBarry Smith #endif 18706c7e564aSBarry Smith 18714a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1872d382aafbSBarry Smith #include <xmmintrin.h> 1873d382aafbSBarry Smith #endif 1874d382aafbSBarry Smith 1875fcfd50ebSBarry Smith #undef __FUNCT__ 1876fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1877d382aafbSBarry Smith /*@C 1878d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1879d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1880d382aafbSBarry Smith PetscMemmove() in that case. 1881d382aafbSBarry Smith 1882d382aafbSBarry Smith Not Collective 1883d382aafbSBarry Smith 1884d382aafbSBarry Smith Input Parameters: 1885d382aafbSBarry Smith + b - pointer to initial memory space 1886d382aafbSBarry Smith - n - length (in bytes) of space to copy 1887d382aafbSBarry Smith 1888d382aafbSBarry Smith Output Parameter: 1889d382aafbSBarry Smith . a - pointer to copy space 1890d382aafbSBarry Smith 1891d382aafbSBarry Smith Level: intermediate 1892d382aafbSBarry Smith 1893d382aafbSBarry Smith Compile Option: 1894d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1895d382aafbSBarry Smith for memory copies on double precision values. 1896d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1897d382aafbSBarry Smith for memory copies on double precision values. 1898d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1899d382aafbSBarry Smith for memory copies on double precision values. 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith Note: 1902d382aafbSBarry Smith This routine is analogous to memcpy(). 1903d382aafbSBarry Smith 1904503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1905503cfb0cSBarry Smith 1906d382aafbSBarry Smith Concepts: memory^copying 1907d382aafbSBarry Smith Concepts: copying^memory 1908d382aafbSBarry Smith 1909d382aafbSBarry Smith .seealso: PetscMemmove() 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith @*/ 19127087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1913d382aafbSBarry Smith { 1914d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1915d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1916d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1917a7e36092SMatthew G Knepley PetscFunctionBegin; 1918e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1919e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1920a7e36092SMatthew G Knepley #else 1921d382aafbSBarry Smith PetscFunctionBegin; 1922a7e36092SMatthew G Knepley #endif 1923d382aafbSBarry Smith if (a != b) { 1924d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1925e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1926d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1927d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1928d382aafbSBarry Smith #endif 1929d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1930d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1931d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1932d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1933c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1934c5df96a5SBarry Smith PetscErrorCode ierr; 1935c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19368b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1937d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1938d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1939d382aafbSBarry Smith #else 1940d382aafbSBarry Smith size_t i; 1941d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1942d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1943d382aafbSBarry Smith #endif 1944d382aafbSBarry Smith } else { 1945d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1946d382aafbSBarry Smith } 1947d382aafbSBarry Smith #else 1948d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith } 1951d382aafbSBarry Smith PetscFunctionReturn(0); 1952d382aafbSBarry Smith } 1953d382aafbSBarry Smith 1954d382aafbSBarry Smith /*@C 1955d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1956d382aafbSBarry Smith 1957d382aafbSBarry Smith Not Collective 1958d382aafbSBarry Smith 1959d382aafbSBarry Smith Input Parameters: 1960d382aafbSBarry Smith + a - pointer to beginning memory location 1961d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith Level: intermediate 1964d382aafbSBarry Smith 1965d382aafbSBarry Smith Compile Option: 1966d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1967d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1968d382aafbSBarry Smith 1969503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1970503cfb0cSBarry Smith 1971d382aafbSBarry Smith Concepts: memory^zeroing 1972d382aafbSBarry Smith Concepts: zeroing^memory 1973d382aafbSBarry Smith 1974d382aafbSBarry Smith .seealso: PetscMemcpy() 1975d382aafbSBarry Smith @*/ 19767087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1977d382aafbSBarry Smith { 1978d382aafbSBarry Smith if (n > 0) { 1979d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1980e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1981d382aafbSBarry Smith #endif 1982d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1983d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1984d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1985d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1986d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1987d382aafbSBarry Smith } else { 1988d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1989d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1990d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1991d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1992d382aafbSBarry Smith } else { 1993d382aafbSBarry Smith #endif 1994d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1995d382aafbSBarry Smith bzero((char *)a,n); 1996d382aafbSBarry Smith #else 1997d382aafbSBarry Smith memset((char*)a,0,n); 1998d382aafbSBarry Smith #endif 1999d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2000d382aafbSBarry Smith } 2001d382aafbSBarry Smith #endif 2002d382aafbSBarry Smith } 2003d382aafbSBarry Smith return 0; 2004d382aafbSBarry Smith } 2005d382aafbSBarry Smith 2006d382aafbSBarry Smith /*MC 2007d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2008d382aafbSBarry Smith 2009eca87e8dSBarry Smith Synopsis: 2010aaa7dc30SBarry Smith #include <petscsys.h> 2011eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2012eca87e8dSBarry Smith 2013d382aafbSBarry Smith Not Collective 2014d382aafbSBarry Smith 2015d382aafbSBarry Smith Input Parameters: 2016d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2017d382aafbSBarry Smith . n - number of elements to fetch 2018d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 201950d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2020d382aafbSBarry Smith 2021d382aafbSBarry Smith Level: developer 2022d382aafbSBarry Smith 2023d382aafbSBarry Smith Notes: 2024d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2025d382aafbSBarry Smith 202650d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 202750d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 202850d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 202963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 203063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 203163cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2032d382aafbSBarry Smith 2033d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2034d382aafbSBarry Smith address). 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith Concepts: memory 2037d382aafbSBarry Smith M*/ 2038d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2039d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2040d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2041d382aafbSBarry Smith } while (0) 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith /* 2044d382aafbSBarry Smith Determine if some of the kernel computation routines use 2045d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2046d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2047d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2048e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2049d382aafbSBarry Smith */ 2050d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2053d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith 20565a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20575a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2058d382aafbSBarry Smith #endif 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2061d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2062d382aafbSBarry Smith #endif 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2065d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2066d382aafbSBarry Smith #endif 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2069d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2070d382aafbSBarry Smith #endif 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2073d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2074d382aafbSBarry Smith #endif 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2077d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2078d382aafbSBarry Smith #endif 2079d382aafbSBarry Smith 2080d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2081d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2082d382aafbSBarry Smith #endif 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2085d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2086d382aafbSBarry Smith #endif 2087d382aafbSBarry Smith 2088d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2089d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2090d382aafbSBarry Smith #endif 2091d382aafbSBarry Smith 2092d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2093d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2094d382aafbSBarry Smith #endif 2095d382aafbSBarry Smith 2096d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2097d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2098d382aafbSBarry Smith #endif 2099d382aafbSBarry Smith 2100d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2101d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2102d382aafbSBarry Smith #endif 2103d382aafbSBarry Smith 2104d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2105d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2106d382aafbSBarry Smith #endif 2107d382aafbSBarry Smith 2108d382aafbSBarry Smith #endif 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith /* 2111d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2112d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2113d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2114d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2115d382aafbSBarry Smith ugly extern "C" {} wrappers. 2116d382aafbSBarry Smith */ 2117d382aafbSBarry Smith #if defined(__cplusplus) 2118d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2119d382aafbSBarry Smith #define EXTERN_C_END } 2120d382aafbSBarry Smith #else 2121d382aafbSBarry Smith #define EXTERN_C_BEGIN 2122d382aafbSBarry Smith #define EXTERN_C_END 2123d382aafbSBarry Smith #endif 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2126d382aafbSBarry Smith 2127d382aafbSBarry Smith /*MC 2128d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2129d382aafbSBarry Smith communication 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith Level: beginner 2132d382aafbSBarry Smith 2133d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2136d382aafbSBarry Smith M*/ 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith /*MC 2139d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2140d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2141d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2142d382aafbSBarry Smith 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith Level: beginner 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2147d382aafbSBarry Smith M*/ 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith /*MC 21508619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21518619c96cSJed Brown 21528619c96cSJed Brown Synopsis: 21538619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 21548619c96cSJed Brown #include <petscsys.h> 21558619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21568619c96cSJed Brown 21578619c96cSJed Brown Level: beginner 21588619c96cSJed Brown 21598619c96cSJed Brown Note: 21608619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 21618619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 21628619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 21638619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 21648619c96cSJed Brown 21658619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21668619c96cSJed Brown M*/ 21678619c96cSJed Brown 21688619c96cSJed Brown /*MC 2169d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2170d382aafbSBarry Smith 2171d382aafbSBarry Smith Level: beginner 2172d382aafbSBarry Smith 2173d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2174d382aafbSBarry Smith M*/ 2175d382aafbSBarry Smith 2176d382aafbSBarry Smith /*MC 2177d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2178d382aafbSBarry Smith Level: beginner 2179d382aafbSBarry Smith 2180d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2181d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2184d382aafbSBarry Smith M*/ 2185d382aafbSBarry Smith 2186d382aafbSBarry Smith /*MC 2187d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2188d382aafbSBarry Smith 2189d382aafbSBarry Smith Level: beginner 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2192d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2193d382aafbSBarry Smith 2194d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2195d382aafbSBarry Smith M*/ 2196d382aafbSBarry Smith 2197d382aafbSBarry Smith /*MC 2198d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2199d382aafbSBarry Smith 2200d382aafbSBarry Smith Level: beginner 2201d382aafbSBarry Smith 2202d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2203d382aafbSBarry Smith pass this value 2204d382aafbSBarry Smith 2205d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2206d382aafbSBarry Smith M*/ 2207d382aafbSBarry Smith 2208d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2209d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2211014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2212d382aafbSBarry Smith #else 2213d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2214d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2215d382aafbSBarry Smith #endif 2216d382aafbSBarry Smith #endif 2217d382aafbSBarry Smith 2218d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2219d382aafbSBarry Smith 2220d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2221d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2222d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2223d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2224d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2225d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2226d382aafbSBarry Smith 2227c5df96a5SBarry Smith #undef __FUNCT__ 2228c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 2229c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2230c5df96a5SBarry Smith { 2231c5df96a5SBarry Smith PetscFunctionBegin; 2232ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2233c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2234c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2235c5df96a5SBarry Smith #endif 2236c5df96a5SBarry Smith PetscFunctionReturn(0); 2237c5df96a5SBarry Smith } 2238c5df96a5SBarry Smith 22394dc2109aSBarry Smith #undef __FUNCT__ 22404dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 22414dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22424dc2109aSBarry Smith { 22434dc2109aSBarry Smith PetscFunctionBegin; 2244ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22454dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22464dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22474dc2109aSBarry Smith #endif 22484dc2109aSBarry Smith PetscFunctionReturn(0); 22494dc2109aSBarry Smith } 22504dc2109aSBarry Smith 2251c5df96a5SBarry Smith 2252d382aafbSBarry Smith /* 22532981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2254d382aafbSBarry Smith */ 2255d382aafbSBarry Smith #if defined(hz) 2256d382aafbSBarry Smith #undef hz 2257d382aafbSBarry Smith #endif 2258d382aafbSBarry Smith 2259d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2260d382aafbSBarry Smith 2261d382aafbSBarry Smith 2262d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2263d382aafbSBarry Smith #include <limits.h> 2264d382aafbSBarry Smith #endif 2265d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2266d382aafbSBarry Smith #include <sys/param.h> 2267d382aafbSBarry Smith #endif 2268d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2269d382aafbSBarry Smith #include <sys/types.h> 2270d382aafbSBarry Smith #endif 2271d382aafbSBarry Smith #if defined(MAXPATHLEN) 2272d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2273d382aafbSBarry Smith #elif defined(MAX_PATH) 2274d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2275d382aafbSBarry Smith #elif defined(_MAX_PATH) 2276d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2277d382aafbSBarry Smith #else 2278d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2279d382aafbSBarry Smith #endif 2280d382aafbSBarry Smith 2281d382aafbSBarry Smith /*MC 2282d382aafbSBarry Smith 2283d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2284d382aafbSBarry Smith 2285d382aafbSBarry Smith $ 1) classic Fortran 77 style 2286d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2287d382aafbSBarry Smith $ XXX variablename 2288d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2289d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2290d382aafbSBarry Smith $ 2291d382aafbSBarry Smith $ 2) classic Fortran 90 style 2292d1716517SSatish Balay $#include "finclude/petscXXX.h" 2293d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2294d382aafbSBarry Smith $ XXX variablename 2295d382aafbSBarry Smith $ 2296d382aafbSBarry Smith $ 3) Using Fortran modules 2297d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2298d382aafbSBarry Smith $ use petscXXXX 2299d382aafbSBarry Smith $ XXX variablename 2300d382aafbSBarry Smith $ 2301d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2302d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2303d382aafbSBarry Smith $ use petscXXXX 2304d382aafbSBarry Smith $ type(XXX) variablename 2305e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2306d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2307d382aafbSBarry Smith 2308d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2309d382aafbSBarry Smith 2310d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2311d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2312d382aafbSBarry Smith $ integer variablename 2313d382aafbSBarry Smith $ 2314d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2315d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2316d382aafbSBarry Smith 2317d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2318d382aafbSBarry Smith for only a few PETSc functions. 2319d382aafbSBarry Smith 2320d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2321d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2322d382aafbSBarry Smith you cannot have something like 2323d382aafbSBarry Smith $ PetscInt row,col 2324d382aafbSBarry Smith $ PetscScalar val 2325d382aafbSBarry Smith $ ... 2326d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2327d382aafbSBarry Smith You must instead have 2328d382aafbSBarry Smith $ PetscInt row(1),col(1) 2329d382aafbSBarry Smith $ PetscScalar val(1) 2330d382aafbSBarry Smith $ ... 2331d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2332d382aafbSBarry Smith 2333d382aafbSBarry Smith 2334d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2335d382aafbSBarry Smith 2336d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2337d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2338d382aafbSBarry Smith 2339d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2340d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2341d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2342d382aafbSBarry Smith 2343d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2344e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2345d382aafbSBarry Smith 2346d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2347d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2348d382aafbSBarry Smith 2349d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2350d382aafbSBarry Smith automatically by "make allfortranstubs". 2351d382aafbSBarry Smith 2352e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2353d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2354d382aafbSBarry Smith include their predecessors 2355d382aafbSBarry Smith 2356d382aafbSBarry Smith Level: beginner 2357d382aafbSBarry Smith 2358d382aafbSBarry Smith M*/ 2359d382aafbSBarry Smith 2360014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2361014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 236627710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2367d382aafbSBarry Smith 2368014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2369014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 237060e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2371014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 237517d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 237617d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2381745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2386d382aafbSBarry Smith 2387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2389d382aafbSBarry Smith 239076bdecfbSBarry Smith /*J 2391d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2392d382aafbSBarry Smith 2393d382aafbSBarry Smith Level: beginner 2394d382aafbSBarry Smith 2395e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2396d382aafbSBarry Smith with the option --download-sprng 2397d382aafbSBarry Smith 23988f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 239976bdecfbSBarry Smith J*/ 240019fd82e9SBarry Smith typedef const char* PetscRandomType; 2401d382aafbSBarry Smith #define PETSCRAND "rand" 2402d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2403d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2404d382aafbSBarry Smith 2405d382aafbSBarry Smith /* Logging support */ 2406014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2407d382aafbSBarry Smith 2408607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2409d382aafbSBarry Smith 2410d382aafbSBarry Smith /*S 2411d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2412d382aafbSBarry Smith 2413d382aafbSBarry Smith Level: intermediate 2414d382aafbSBarry Smith 2415d382aafbSBarry Smith Concepts: random numbers 2416d382aafbSBarry Smith 2417d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2418d382aafbSBarry Smith S*/ 2419d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2420d382aafbSBarry Smith 2421d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2422140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2423014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2424d382aafbSBarry Smith 2425607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2426bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 242719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 242919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2430ce1779c8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,const char prefix[],const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,prefix,name);} 2431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2432d382aafbSBarry Smith 2433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2442d382aafbSBarry Smith 2443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2450d382aafbSBarry Smith 2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2462e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2464d382aafbSBarry Smith 2465d382aafbSBarry Smith /* 2466d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2467d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2468d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2469d382aafbSBarry Smith PetscBinarySeek(). 2470d382aafbSBarry Smith */ 2471d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2472d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2473d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2474d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2475d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2476d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2477d382aafbSBarry Smith 2478d382aafbSBarry Smith /*E 2479d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2480d382aafbSBarry Smith 2481d382aafbSBarry Smith Level: advanced 2482d382aafbSBarry Smith 2483d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2484d382aafbSBarry Smith E*/ 2485d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2487014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2488014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2489d382aafbSBarry Smith 2490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2496d382aafbSBarry Smith 2497014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2499014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2502f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2503d382aafbSBarry Smith 25046145cd65SJed Brown /*E 25056145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 25066145cd65SJed Brown 25076145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 25086145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 25096145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 25106145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 25116145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 25126145cd65SJed Brown 25136145cd65SJed Brown Level: developer 25146145cd65SJed Brown 25156145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 25166145cd65SJed Brown E*/ 25176145cd65SJed Brown typedef enum { 25186145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 25196145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 25206145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 25216145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 25226145cd65SJed Brown } PetscBuildTwoSidedType; 25236145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 25246145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 25256145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 25266145cd65SJed Brown 2527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2528d382aafbSBarry Smith 2529d382aafbSBarry Smith /*E 2530d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2531d382aafbSBarry Smith 2532d382aafbSBarry Smith Level: beginner 2533d382aafbSBarry Smith 2534d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2535d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2536d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2537d382aafbSBarry Smith E*/ 25386fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2539d382aafbSBarry Smith 2540d382aafbSBarry Smith /*MC 2541d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2542d382aafbSBarry Smith 2543d382aafbSBarry Smith Level: beginner 2544d382aafbSBarry Smith 2545d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2546eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2547eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2548d382aafbSBarry Smith 2549d382aafbSBarry Smith M*/ 2550d382aafbSBarry Smith 2551d382aafbSBarry Smith /*MC 2552d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2553d382aafbSBarry Smith value into that location 2554d382aafbSBarry Smith 2555d382aafbSBarry Smith Level: beginner 2556d382aafbSBarry Smith 2557d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2558eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2559eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2560d382aafbSBarry Smith 2561d382aafbSBarry Smith M*/ 2562d382aafbSBarry Smith 2563d382aafbSBarry Smith /*MC 2564d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2565d382aafbSBarry Smith 2566d382aafbSBarry Smith Level: beginner 2567d382aafbSBarry Smith 2568d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2569d382aafbSBarry Smith 2570d382aafbSBarry Smith M*/ 2571d382aafbSBarry Smith 2572ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2573ce94432eSBarry Smith 257445487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 257545487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 257645487dadSJed Brown 2577d382aafbSBarry Smith /*S 2578d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2579d382aafbSBarry Smith 2580d382aafbSBarry Smith Level: advanced 2581d382aafbSBarry Smith 2582d382aafbSBarry Smith Concepts: communicator, create 2583d382aafbSBarry Smith S*/ 2584d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2585d382aafbSBarry Smith 2586d382aafbSBarry Smith struct _n_PetscSubcomm { 2587d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2588d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2589d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 259045487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 259145487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2592708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 259345487dadSJed Brown PetscSubcommType type; 2594d382aafbSBarry Smith }; 2595d382aafbSBarry Smith 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 260065d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2601053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2602f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2603d382aafbSBarry Smith 26040f453b92SJed Brown /*S 26050f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 26060f453b92SJed Brown 26070f453b92SJed Brown Level: developer 26080f453b92SJed Brown 26090f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 26100f453b92SJed Brown S*/ 26110f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 261213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 26130f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 261413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2615137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2616137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2617137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 261813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 261913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 26200f453b92SJed Brown 2621471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2622471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2623471ecdacSJed Brown * possible. */ 2624f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2625d382aafbSBarry Smith 2626268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 26271f817a21SBarry Smith #undef __FUNCT__ 26281f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 26291f817a21SBarry Smith /*@C 26301f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 26311f817a21SBarry Smith 26321f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 26331f817a21SBarry Smith 26341f817a21SBarry Smith Input Parameters: 26351f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 26361f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 26371f817a21SBarry Smith 2638850545d0SSatish Balay Level: intermediate 2639850545d0SSatish Balay 26401f817a21SBarry Smith Options Database: 26411f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 26421f817a21SBarry Smith @*/ 2643dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2644dff31646SBarry Smith { 2645dff31646SBarry Smith size_t len; 2646dff31646SBarry Smith char *vstring; 2647dff31646SBarry Smith PetscErrorCode ierr; 2648dff31646SBarry Smith 26491f817a21SBarry Smith PetscFunctionBegin; 26508d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2651dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2652dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2653dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2654dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26551f817a21SBarry Smith PetscFunctionReturn(0); 2656dff31646SBarry Smith } 2657dff31646SBarry Smith 2658b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2659fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2660fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2661f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2662fe278a28SBarry Smith 2663f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2664f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2665b967cddfSBarry Smith 266604102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2667dff31646SBarry Smith 266868e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 26695dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2670d382aafbSBarry Smith 2671d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2672d382aafbSBarry Smith #undef __FUNCT__ 2673d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2674d382aafbSBarry Smith 2675d382aafbSBarry Smith #endif 2676