1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ed938b00SJed Brown #if defined(__cplusplus) 44ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 45ed938b00SJed Brown #else 46ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 47ed938b00SJed Brown #endif 48ed938b00SJed Brown 49ed938b00SJed Brown #if defined(__cplusplus) 50ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 51ed938b00SJed Brown #else 52ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 53ed938b00SJed Brown #endif 54ed938b00SJed Brown 55ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 56014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 57014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 5821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 59014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 60014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 61014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 6221f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 63d382aafbSBarry Smith #else 64014dd563SJed Brown # define PETSC_DLLEXPORT 65014dd563SJed Brown # define PETSC_DLLIMPORT 6621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #endif 68014dd563SJed Brown 69014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 70014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 71014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 72014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 73014dd563SJed Brown #endif 74014dd563SJed Brown 752c280183SJed Brown #if defined(__cplusplus) 76014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 77638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 7821f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #else 80014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 81638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 826258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 83d382aafbSBarry Smith #endif 8427710113SBarry Smith 852c8e378dSBarry Smith #include <petscversion.h> 86301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 87d382aafbSBarry Smith 88d382aafbSBarry Smith /* ========================================================================== */ 89d382aafbSBarry Smith 90d382aafbSBarry Smith /* 91d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 92d382aafbSBarry Smith 93d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 94d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 95d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 96d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 97d382aafbSBarry Smith mpicxx.h directly in their code 98d382aafbSBarry Smith */ 99fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 100d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 101fa9e63e2SJed Brown #endif 102fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 103d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 104fa9e63e2SJed Brown #endif 1052c8e378dSBarry Smith #include <mpi.h> 10665013866SBarry Smith 107d382aafbSBarry Smith /* 1082981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 110d382aafbSBarry Smith */ 111d382aafbSBarry Smith #include <stdio.h> 112d382aafbSBarry Smith 113d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 114d382aafbSBarry Smith #if !defined(MPIAPI) 115d382aafbSBarry Smith #define MPIAPI 116d382aafbSBarry Smith #endif 117d382aafbSBarry Smith 118894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 119894dd566SJed Brown #if defined(__has_attribute) 120894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 121894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1228ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1238ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 124894dd566SJed Brown # endif 125894dd566SJed Brown #endif 126894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 127894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1288ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1298ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 130894dd566SJed Brown #endif 131b3506946SBarry Smith 132d382aafbSBarry Smith /*MC 133d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 134d382aafbSBarry Smith 135d382aafbSBarry Smith Level: beginner 136d382aafbSBarry Smith 137d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 138d382aafbSBarry Smith M*/ 139d382aafbSBarry Smith typedef int PetscErrorCode; 140d382aafbSBarry Smith 141d382aafbSBarry Smith /*MC 142d382aafbSBarry Smith 143503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 144d382aafbSBarry Smith (internal integer in the data structure used for error 1452981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1460700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 147d382aafbSBarry Smith 148d382aafbSBarry Smith Level: advanced 149d382aafbSBarry Smith 1500700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 151d382aafbSBarry Smith M*/ 1520700a824SBarry Smith typedef int PetscClassId; 153d382aafbSBarry Smith 154d382aafbSBarry Smith 155d382aafbSBarry Smith /*MC 156d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 157d382aafbSBarry Smith 158d382aafbSBarry Smith Level: intermediate 159d382aafbSBarry Smith 160d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1613b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 162d382aafbSBarry Smith 1634dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1642981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 165d382aafbSBarry Smith 166d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 167d382aafbSBarry Smith 168d382aafbSBarry Smith M*/ 169d382aafbSBarry Smith typedef int PetscMPIInt; 170d382aafbSBarry Smith 171d382aafbSBarry Smith /*MC 172d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 173d382aafbSBarry Smith 174d382aafbSBarry Smith Level: intermediate 175d382aafbSBarry Smith 176d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 177d382aafbSBarry Smith M*/ 178d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 1795a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 180d382aafbSBarry Smith 181fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 182fab38c73SJed Brown #include <stdint.h> 183fab38c73SJed Brown #endif 184fab38c73SJed Brown 185d382aafbSBarry Smith /*MC 186d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1873b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 188d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 189d382aafbSBarry Smith 190d382aafbSBarry Smith Level: intermediate 191d382aafbSBarry Smith 192d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 193d382aafbSBarry Smith M*/ 194fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 195fab38c73SJed Brown typedef int64_t Petsc64bitInt; 196fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 197f505b413SSatish Balay typedef long long Petsc64bitInt; 198f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 199236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 200236ed0a3SSatish Balay #else 201f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 202236ed0a3SSatish Balay #endif 203d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 204236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 20541860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 206fab38c73SJed Brown # define MPIU_INT MPI_INT64_T 207fab38c73SJed Brown # else 208d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 209fab38c73SJed Brown # endif 210d382aafbSBarry Smith #else 211d382aafbSBarry Smith typedef int PetscInt; 212d382aafbSBarry Smith #define MPIU_INT MPI_INT 213d382aafbSBarry Smith #endif 214236ed0a3SSatish Balay 215d382aafbSBarry Smith 216702bc34aSSatish Balay /*MC 217702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 218702bc34aSSatish Balay 219702bc34aSSatish Balay Level: intermediate 220702bc34aSSatish Balay 221702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 222702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 223702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 224702bc34aSSatish Balay 225c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2262981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 227702bc34aSSatish Balay 2282981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 229702bc34aSSatish Balay if you run ./configure with the option 230702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2312981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2322981ebdbSBarry Smith 2332981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2342981ebdbSBarry Smith 2352981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 236702bc34aSSatish Balay 237702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 238702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 239702bc34aSSatish Balay 240702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 241702bc34aSSatish Balay 242702bc34aSSatish Balay M*/ 243702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 244702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 245702bc34aSSatish Balay #else 246702bc34aSSatish Balay typedef int PetscBLASInt; 247702bc34aSSatish Balay #endif 248702bc34aSSatish Balay 24958b60935SBarry Smith /*EC 25058b60935SBarry Smith 2512981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 25258b60935SBarry Smith 25358b60935SBarry Smith Level: advanced 25458b60935SBarry Smith 25558b60935SBarry Smith .seealso: PetscObjectSetPrecision() 25658b60935SBarry Smith E*/ 25758b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 258014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 25958b60935SBarry Smith 260503cfb0cSBarry Smith /* 261503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 262503cfb0cSBarry Smith */ 263d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 264adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 265d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 266adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 267d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 268adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 269d382aafbSBarry Smith #else 270d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 271d382aafbSBarry Smith #endif 272d382aafbSBarry Smith 273d382aafbSBarry Smith 274d382aafbSBarry Smith /* 275d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 276d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 277d382aafbSBarry Smith */ 278014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 279d382aafbSBarry Smith 280d382aafbSBarry Smith /* 281d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 282d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 283d382aafbSBarry Smith */ 284014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 285d382aafbSBarry Smith 286d382aafbSBarry Smith /*MC 287d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 288d382aafbSBarry Smith 289d382aafbSBarry Smith Synopsis: 290f2ba6396SBarry Smith #include "petscsys.h" 291ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 292d382aafbSBarry Smith 293eca87e8dSBarry Smith Not Collective 294eca87e8dSBarry Smith 295d382aafbSBarry Smith Input Parameters: 296d382aafbSBarry Smith . cond - condition or expression 297d382aafbSBarry Smith 298d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 299d382aafbSBarry Smith branch is unlikely. 300d382aafbSBarry Smith 301d382aafbSBarry Smith Level: advanced 302d382aafbSBarry Smith 303d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 304d382aafbSBarry Smith M*/ 305d382aafbSBarry Smith 306d382aafbSBarry Smith /*MC 307d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 308d382aafbSBarry Smith 309d382aafbSBarry Smith Synopsis: 310f2ba6396SBarry Smith #include "petscsys.h" 311ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 312d382aafbSBarry Smith 313eca87e8dSBarry Smith Not Collective 314eca87e8dSBarry Smith 315d382aafbSBarry Smith Input Parameters: 316d382aafbSBarry Smith . cond - condition or expression 317d382aafbSBarry Smith 318d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 319d382aafbSBarry Smith branch is likely. 320d382aafbSBarry Smith 321d382aafbSBarry Smith Level: advanced 322d382aafbSBarry Smith 323d382aafbSBarry Smith .seealso: PetscUnlikely() 324d382aafbSBarry Smith M*/ 325d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 326d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 327d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 328d382aafbSBarry Smith #else 329cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 330cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 331d382aafbSBarry Smith #endif 332d382aafbSBarry Smith 333d382aafbSBarry Smith /* 334d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 335d382aafbSBarry Smith */ 3362c8e378dSBarry Smith #include <petscmath.h> 337d382aafbSBarry Smith 338d382aafbSBarry Smith /* 339d382aafbSBarry Smith Declare extern C stuff after including external header files 340d382aafbSBarry Smith */ 341d382aafbSBarry Smith 342d382aafbSBarry Smith 343d382aafbSBarry Smith /* 344d382aafbSBarry Smith Basic PETSc constants 345d382aafbSBarry Smith */ 346d382aafbSBarry Smith 347d382aafbSBarry Smith /*E 348ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 349d382aafbSBarry Smith 350d382aafbSBarry Smith Level: beginner 351d382aafbSBarry Smith 352ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 35334e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 35434e82e7dSBarry Smith 355d382aafbSBarry Smith E*/ 356ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3576a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3585a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 35970b3c8c7SBarry Smith 36070b3c8c7SBarry Smith /*E 36170b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 36270b3c8c7SBarry Smith 36370b3c8c7SBarry Smith Level: beginner 36470b3c8c7SBarry Smith 36570b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 36670b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 36770b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 36870b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 36970b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 37070b3c8c7SBarry Smith 37170b3c8c7SBarry Smith E*/ 37270b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3736a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 374d382aafbSBarry Smith 375d382aafbSBarry Smith /*MC 376ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 377d382aafbSBarry Smith 378d382aafbSBarry Smith Level: beginner 379d382aafbSBarry Smith 380d382aafbSBarry Smith Note: Zero integer 381d382aafbSBarry Smith 382ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 383d382aafbSBarry Smith M*/ 384d382aafbSBarry Smith 385d382aafbSBarry Smith /*MC 386ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 387d382aafbSBarry Smith 388d382aafbSBarry Smith Level: beginner 389d382aafbSBarry Smith 390d382aafbSBarry Smith Note: Nonzero integer 391d382aafbSBarry Smith 392ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 393d382aafbSBarry Smith M*/ 394d382aafbSBarry Smith 395d382aafbSBarry Smith /*MC 3960298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 397d382aafbSBarry Smith 398d382aafbSBarry Smith Level: beginner 399d382aafbSBarry Smith 400d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 401d382aafbSBarry Smith some default 402d382aafbSBarry Smith 403d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 404503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 405d382aafbSBarry Smith 406d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 407d382aafbSBarry Smith 408d382aafbSBarry Smith M*/ 4093bcbec90SJed Brown #define PETSC_NULL NULL 410d382aafbSBarry Smith 411d382aafbSBarry Smith /*MC 4120298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 413d382aafbSBarry Smith 414d382aafbSBarry Smith Level: beginner 415d382aafbSBarry Smith 416d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 417d382aafbSBarry Smith some default 418d382aafbSBarry Smith 419d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 420d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 421d382aafbSBarry Smith 422d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 423d382aafbSBarry Smith 424d382aafbSBarry Smith M*/ 4250298fd71SBarry Smith #define PETSC_IGNORE NULL 426d382aafbSBarry Smith 427d382aafbSBarry Smith /*MC 428557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 429557d4da8SBarry Smith where you wish PETSc to use the default. 430557d4da8SBarry Smith 431557d4da8SBarry Smith Level: beginner 432557d4da8SBarry Smith 433557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 434557d4da8SBarry Smith 435557d4da8SBarry Smith M*/ 436557d4da8SBarry Smith #define PETSC_DECIDE -1 437557d4da8SBarry Smith 438557d4da8SBarry Smith /*MC 439d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 440d382aafbSBarry Smith where you wish PETSc to compute the required value. 441d382aafbSBarry Smith 442d382aafbSBarry Smith Level: beginner 443d382aafbSBarry Smith 444557d4da8SBarry Smith 445557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 446557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 447557d4da8SBarry Smith 4480298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 449d382aafbSBarry Smith 450d382aafbSBarry Smith M*/ 451d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 452d382aafbSBarry Smith 453d382aafbSBarry Smith /*MC 454557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 455557d4da8SBarry Smith where you wish PETSc to use the default. 456557d4da8SBarry Smith 457557d4da8SBarry Smith Level: beginner 458557d4da8SBarry Smith 459557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 460557d4da8SBarry Smith 4610298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 462557d4da8SBarry Smith 463557d4da8SBarry Smith M*/ 464557d4da8SBarry Smith #define PETSC_DEFAULT -2 465557d4da8SBarry Smith 466557d4da8SBarry Smith /*MC 467d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 468d382aafbSBarry Smith all the processs that PETSc knows about. 469d382aafbSBarry Smith 470d382aafbSBarry Smith Level: beginner 471d382aafbSBarry Smith 472d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 473d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 474d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 475d382aafbSBarry Smith PetscInitialize() 476d382aafbSBarry Smith 477d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 478d382aafbSBarry Smith 479d382aafbSBarry Smith M*/ 480014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 481d382aafbSBarry Smith 482d382aafbSBarry Smith /*MC 483503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 484d382aafbSBarry Smith 485d382aafbSBarry Smith Level: beginner 486d382aafbSBarry Smith 487d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 488d382aafbSBarry Smith 489d382aafbSBarry Smith M*/ 490d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 491d382aafbSBarry Smith 492d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 493014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 494014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 495014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 4964cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 497d382aafbSBarry Smith 498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 499014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 501d382aafbSBarry Smith 502d382aafbSBarry Smith /*MC 503d382aafbSBarry Smith PetscMalloc - Allocates memory 504d382aafbSBarry Smith 505eca87e8dSBarry Smith Synopsis: 506f2ba6396SBarry Smith #include "petscsys.h" 507eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 508eca87e8dSBarry Smith 509eca87e8dSBarry Smith Not Collective 510eca87e8dSBarry Smith 511d382aafbSBarry Smith Input Parameter: 512d382aafbSBarry Smith . m - number of bytes to allocate 513d382aafbSBarry Smith 514d382aafbSBarry Smith Output Parameter: 515d382aafbSBarry Smith . result - memory allocated 516d382aafbSBarry Smith 517d382aafbSBarry Smith Level: beginner 518d382aafbSBarry Smith 519d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 520d382aafbSBarry Smith 521d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 522d382aafbSBarry Smith properly handle not freeing the null pointer. 523d382aafbSBarry Smith 524d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 525d382aafbSBarry Smith 526d382aafbSBarry Smith Concepts: memory allocation 527d382aafbSBarry Smith 528d382aafbSBarry Smith M*/ 529efca3c55SSatish Balay #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b)) : (*(b) = 0,0) ) 530d382aafbSBarry Smith 531d382aafbSBarry Smith /*MC 532503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 533d382aafbSBarry Smith 534d382aafbSBarry Smith Synopsis: 535f2ba6396SBarry Smith #include "petscsys.h" 536d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 537d382aafbSBarry Smith 538eca87e8dSBarry Smith Not Collective 539eca87e8dSBarry Smith 540eca87e8dSBarry Smith Input Parameters: 541eca87e8dSBarry Smith . addr - address to align (any pointer type) 542eca87e8dSBarry Smith 543d382aafbSBarry Smith Level: developer 544d382aafbSBarry Smith 545d382aafbSBarry Smith .seealso: PetscMallocAlign() 546d382aafbSBarry Smith 547d382aafbSBarry Smith Concepts: memory allocation 548d382aafbSBarry Smith M*/ 549d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 550d382aafbSBarry Smith 551d382aafbSBarry Smith /*MC 552785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 553785e854fSJed Brown 554785e854fSJed Brown Synopsis: 555785e854fSJed Brown #include "petscsys.h" 556785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 557785e854fSJed Brown 558785e854fSJed Brown Not Collective 559785e854fSJed Brown 560785e854fSJed Brown Input Parameter: 561785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 562785e854fSJed Brown 563785e854fSJed Brown Output Parameter: 564785e854fSJed Brown . r1 - memory allocated in first chunk 565785e854fSJed Brown 566785e854fSJed Brown Level: developer 567785e854fSJed Brown 5681795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 569785e854fSJed Brown 570785e854fSJed Brown Concepts: memory allocation 571785e854fSJed Brown 572785e854fSJed Brown M*/ 573785e854fSJed Brown #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 574785e854fSJed Brown 575785e854fSJed Brown /*MC 5761795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 5771795a4d1SJed Brown 5781795a4d1SJed Brown Synopsis: 5791795a4d1SJed Brown #include "petscsys.h" 5801795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 5811795a4d1SJed Brown 5821795a4d1SJed Brown Not Collective 5831795a4d1SJed Brown 5841795a4d1SJed Brown Input Parameter: 5851795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 5861795a4d1SJed Brown 5871795a4d1SJed Brown Output Parameter: 5881795a4d1SJed Brown . r1 - memory allocated in first chunk 5891795a4d1SJed Brown 5901795a4d1SJed Brown Level: developer 5911795a4d1SJed Brown 5921795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 5931795a4d1SJed Brown 5941795a4d1SJed Brown Concepts: memory allocation 5951795a4d1SJed Brown 5961795a4d1SJed Brown M*/ 5971795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 5981795a4d1SJed Brown 5991795a4d1SJed Brown /*MC 600dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 601d382aafbSBarry Smith 602eca87e8dSBarry Smith Synopsis: 603f2ba6396SBarry Smith #include "petscsys.h" 604dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 605eca87e8dSBarry Smith 606eca87e8dSBarry Smith Not Collective 607eca87e8dSBarry Smith 608d382aafbSBarry Smith Input Parameter: 609d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 610dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 611d382aafbSBarry Smith 612d382aafbSBarry Smith Output Parameter: 613d382aafbSBarry Smith + r1 - memory allocated in first chunk 614d382aafbSBarry Smith - r2 - memory allocated in second chunk 615d382aafbSBarry Smith 616d382aafbSBarry Smith Level: developer 617d382aafbSBarry Smith 6181795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 619d382aafbSBarry Smith 620d382aafbSBarry Smith Concepts: memory allocation 621d382aafbSBarry Smith 622d382aafbSBarry Smith M*/ 623d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 624dcca6d9dSJed Brown #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2)) 625d382aafbSBarry Smith #else 626dcca6d9dSJed Brown #define PetscMalloc2(m1,r1,m2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0)) 627d382aafbSBarry Smith #endif 628d382aafbSBarry Smith 629d382aafbSBarry Smith /*MC 6301795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 6311795a4d1SJed Brown 6321795a4d1SJed Brown Synopsis: 6331795a4d1SJed Brown #include "petscsys.h" 6341795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 6351795a4d1SJed Brown 6361795a4d1SJed Brown Not Collective 6371795a4d1SJed Brown 6381795a4d1SJed Brown Input Parameter: 6391795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 6401795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6411795a4d1SJed Brown 6421795a4d1SJed Brown Output Parameter: 6431795a4d1SJed Brown + r1 - memory allocated in first chunk 6441795a4d1SJed Brown - r2 - memory allocated in second chunk 6451795a4d1SJed Brown 6461795a4d1SJed Brown Level: developer 6471795a4d1SJed Brown 6481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 6491795a4d1SJed Brown 6501795a4d1SJed Brown Concepts: memory allocation 6511795a4d1SJed Brown M*/ 6521795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 6531795a4d1SJed Brown 6541795a4d1SJed Brown /*MC 655dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 656d382aafbSBarry Smith 657eca87e8dSBarry Smith Synopsis: 658f2ba6396SBarry Smith #include "petscsys.h" 659dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 660eca87e8dSBarry Smith 661eca87e8dSBarry Smith Not Collective 662eca87e8dSBarry Smith 663d382aafbSBarry Smith Input Parameter: 664d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 665d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 666dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 667d382aafbSBarry Smith 668d382aafbSBarry Smith Output Parameter: 669d382aafbSBarry Smith + r1 - memory allocated in first chunk 670d382aafbSBarry Smith . r2 - memory allocated in second chunk 671d382aafbSBarry Smith - r3 - memory allocated in third chunk 672d382aafbSBarry Smith 673d382aafbSBarry Smith Level: developer 674d382aafbSBarry Smith 6751795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 676d382aafbSBarry Smith 677d382aafbSBarry Smith Concepts: memory allocation 678d382aafbSBarry Smith 679d382aafbSBarry Smith M*/ 680d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 681dcca6d9dSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3)) 682d382aafbSBarry Smith #else 683dcca6d9dSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) \ 684dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0)) 685d382aafbSBarry Smith #endif 686d382aafbSBarry Smith 687d382aafbSBarry Smith /*MC 6881795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 6891795a4d1SJed Brown 6901795a4d1SJed Brown Synopsis: 6911795a4d1SJed Brown #include "petscsys.h" 6921795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 6931795a4d1SJed Brown 6941795a4d1SJed Brown Not Collective 6951795a4d1SJed Brown 6961795a4d1SJed Brown Input Parameter: 6971795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 6981795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 6991795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7001795a4d1SJed Brown 7011795a4d1SJed Brown Output Parameter: 7021795a4d1SJed Brown + r1 - memory allocated in first chunk 7031795a4d1SJed Brown . r2 - memory allocated in second chunk 7041795a4d1SJed Brown - r3 - memory allocated in third chunk 7051795a4d1SJed Brown 7061795a4d1SJed Brown Level: developer 7071795a4d1SJed Brown 7081795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7091795a4d1SJed Brown 7101795a4d1SJed Brown Concepts: memory allocation 7111795a4d1SJed Brown M*/ 7121795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7131795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7141795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7151795a4d1SJed Brown 7161795a4d1SJed Brown /*MC 717dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 718d382aafbSBarry Smith 719eca87e8dSBarry Smith Synopsis: 720f2ba6396SBarry Smith #include "petscsys.h" 721dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 722eca87e8dSBarry Smith 723eca87e8dSBarry Smith Not Collective 724eca87e8dSBarry Smith 725d382aafbSBarry Smith Input Parameter: 726d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 727d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 728d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 729dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 730d382aafbSBarry Smith 731d382aafbSBarry Smith Output Parameter: 732d382aafbSBarry Smith + r1 - memory allocated in first chunk 733d382aafbSBarry Smith . r2 - memory allocated in second chunk 734d382aafbSBarry Smith . r3 - memory allocated in third chunk 735d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 736d382aafbSBarry Smith 737d382aafbSBarry Smith Level: developer 738d382aafbSBarry Smith 7391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 740d382aafbSBarry Smith 741d382aafbSBarry Smith Concepts: memory allocation 742d382aafbSBarry Smith 743d382aafbSBarry Smith M*/ 744d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 745dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4)) 746d382aafbSBarry Smith #else 747dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 748dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) \ 749dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0)) 750d382aafbSBarry Smith #endif 751d382aafbSBarry Smith 752d382aafbSBarry Smith /*MC 7531795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 7541795a4d1SJed Brown 7551795a4d1SJed Brown Synopsis: 7561795a4d1SJed Brown #include "petscsys.h" 7571795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 7581795a4d1SJed Brown 7591795a4d1SJed Brown Not Collective 7601795a4d1SJed Brown 7611795a4d1SJed Brown Input Parameter: 7621795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 7631795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 7641795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 7651795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 7661795a4d1SJed Brown 7671795a4d1SJed Brown Output Parameter: 7681795a4d1SJed Brown + r1 - memory allocated in first chunk 7691795a4d1SJed Brown . r2 - memory allocated in second chunk 7701795a4d1SJed Brown . r3 - memory allocated in third chunk 7711795a4d1SJed Brown - r4 - memory allocated in fourth chunk 7721795a4d1SJed Brown 7731795a4d1SJed Brown Level: developer 7741795a4d1SJed Brown 7751795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 7761795a4d1SJed Brown 7771795a4d1SJed Brown Concepts: memory allocation 7781795a4d1SJed Brown 7791795a4d1SJed Brown M*/ 7801795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 7811795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 7821795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 7831795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 7841795a4d1SJed Brown 7851795a4d1SJed Brown /*MC 786dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 787d382aafbSBarry Smith 788eca87e8dSBarry Smith Synopsis: 789f2ba6396SBarry Smith #include "petscsys.h" 790dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 791eca87e8dSBarry Smith 792eca87e8dSBarry Smith Not Collective 793eca87e8dSBarry Smith 794d382aafbSBarry Smith Input Parameter: 795d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 796d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 797d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 798d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 799dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 800d382aafbSBarry Smith 801d382aafbSBarry Smith Output Parameter: 802d382aafbSBarry Smith + r1 - memory allocated in first chunk 803d382aafbSBarry Smith . r2 - memory allocated in second chunk 804d382aafbSBarry Smith . r3 - memory allocated in third chunk 805d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 806d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 807d382aafbSBarry Smith 808d382aafbSBarry Smith Level: developer 809d382aafbSBarry Smith 8101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 811d382aafbSBarry Smith 812d382aafbSBarry Smith Concepts: memory allocation 813d382aafbSBarry Smith 814d382aafbSBarry Smith M*/ 815d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 816dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5)) 817d382aafbSBarry Smith #else 818dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 819dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) \ 820dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0)) 821d382aafbSBarry Smith #endif 822d382aafbSBarry Smith 8231795a4d1SJed Brown /*MC 8241795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 8251795a4d1SJed Brown 8261795a4d1SJed Brown Synopsis: 8271795a4d1SJed Brown #include "petscsys.h" 8281795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 8291795a4d1SJed Brown 8301795a4d1SJed Brown Not Collective 8311795a4d1SJed Brown 8321795a4d1SJed Brown Input Parameter: 8331795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 8341795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 8351795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 8361795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 8371795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8381795a4d1SJed Brown 8391795a4d1SJed Brown Output Parameter: 8401795a4d1SJed Brown + r1 - memory allocated in first chunk 8411795a4d1SJed Brown . r2 - memory allocated in second chunk 8421795a4d1SJed Brown . r3 - memory allocated in third chunk 8431795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8441795a4d1SJed Brown - r5 - memory allocated in fifth chunk 8451795a4d1SJed Brown 8461795a4d1SJed Brown Level: developer 8471795a4d1SJed Brown 8481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 8491795a4d1SJed Brown 8501795a4d1SJed Brown Concepts: memory allocation 8511795a4d1SJed Brown 8521795a4d1SJed Brown M*/ 8531795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8541795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8551795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8561795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 857d382aafbSBarry Smith 858d382aafbSBarry Smith /*MC 859dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 860d382aafbSBarry Smith 861eca87e8dSBarry Smith Synopsis: 862f2ba6396SBarry Smith #include "petscsys.h" 863dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 864eca87e8dSBarry Smith 865eca87e8dSBarry Smith Not Collective 866eca87e8dSBarry Smith 867d382aafbSBarry Smith Input Parameter: 868d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 869d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 870d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 871d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 872d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 873dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 874d382aafbSBarry Smith 875d382aafbSBarry Smith Output Parameter: 876d382aafbSBarry Smith + r1 - memory allocated in first chunk 877d382aafbSBarry Smith . r2 - memory allocated in second chunk 878d382aafbSBarry Smith . r3 - memory allocated in third chunk 879d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 880d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 881d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 882d382aafbSBarry Smith 883d382aafbSBarry Smith Level: developer 884d382aafbSBarry Smith 8851795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 886d382aafbSBarry Smith 887d382aafbSBarry Smith Concepts: memory allocation 888d382aafbSBarry Smith 889d382aafbSBarry Smith M*/ 890d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 891dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6)) 892d382aafbSBarry Smith #else 893dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 894dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) \ 895dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0)) 896d382aafbSBarry Smith #endif 897d382aafbSBarry Smith 898d382aafbSBarry Smith /*MC 8991795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 9001795a4d1SJed Brown 9011795a4d1SJed Brown Synopsis: 9021795a4d1SJed Brown #include "petscsys.h" 9031795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 9041795a4d1SJed Brown 9051795a4d1SJed Brown Not Collective 9061795a4d1SJed Brown 9071795a4d1SJed Brown Input Parameter: 9081795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 9091795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 9101795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 9111795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 9121795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 9131795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9141795a4d1SJed Brown 9151795a4d1SJed Brown Output Parameter: 9161795a4d1SJed Brown + r1 - memory allocated in first chunk 9171795a4d1SJed Brown . r2 - memory allocated in second chunk 9181795a4d1SJed Brown . r3 - memory allocated in third chunk 9191795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9201795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9211795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9221795a4d1SJed Brown 9231795a4d1SJed Brown Level: developer 9241795a4d1SJed Brown 9251795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9261795a4d1SJed Brown 9271795a4d1SJed Brown Concepts: memory allocation 9281795a4d1SJed Brown M*/ 9291795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9301795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9311795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9321795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9331795a4d1SJed Brown 9341795a4d1SJed Brown /*MC 935dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 936d382aafbSBarry Smith 937eca87e8dSBarry Smith Synopsis: 938f2ba6396SBarry Smith #include "petscsys.h" 939dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 940eca87e8dSBarry Smith 941eca87e8dSBarry Smith Not Collective 942eca87e8dSBarry Smith 943d382aafbSBarry Smith Input Parameter: 944d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 945d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 946d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 947d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 948d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 949d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 950dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 951d382aafbSBarry Smith 952d382aafbSBarry Smith Output Parameter: 953d382aafbSBarry Smith + r1 - memory allocated in first chunk 954d382aafbSBarry Smith . r2 - memory allocated in second chunk 955d382aafbSBarry Smith . r3 - memory allocated in third chunk 956d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 957d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 958d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 959eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 960d382aafbSBarry Smith 961d382aafbSBarry Smith Level: developer 962d382aafbSBarry Smith 9631795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 964d382aafbSBarry Smith 965d382aafbSBarry Smith Concepts: memory allocation 966d382aafbSBarry Smith 967d382aafbSBarry Smith M*/ 968d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 969dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc((m1)*sizeof(**(r1)),r1) || PetscMalloc((m2)*sizeof(**(r2)),r2) || PetscMalloc((m3)*sizeof(**(r3)),r3) || PetscMalloc((m4)*sizeof(**(r4)),r4) || PetscMalloc((m5)*sizeof(**(r5)),r5) || PetscMalloc((m6)*sizeof(**(r6)),r6) || PetscMalloc((m7)*sizeof(**(r7)),r7)) 970d382aafbSBarry Smith #else 971dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 972dcca6d9dSJed Brown ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) \ 973dcca6d9dSJed Brown || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0)) 974d382aafbSBarry Smith #endif 975d382aafbSBarry Smith 976d382aafbSBarry Smith /*MC 9771795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 9781795a4d1SJed Brown 9791795a4d1SJed Brown Synopsis: 9801795a4d1SJed Brown #include "petscsys.h" 9811795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 9821795a4d1SJed Brown 9831795a4d1SJed Brown Not Collective 9841795a4d1SJed Brown 9851795a4d1SJed Brown Input Parameter: 9861795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 9871795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 9881795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 9891795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 9901795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 9911795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 9921795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 9931795a4d1SJed Brown 9941795a4d1SJed Brown Output Parameter: 9951795a4d1SJed Brown + r1 - memory allocated in first chunk 9961795a4d1SJed Brown . r2 - memory allocated in second chunk 9971795a4d1SJed Brown . r3 - memory allocated in third chunk 9981795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9991795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10001795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10011795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10021795a4d1SJed Brown 10031795a4d1SJed Brown Level: developer 10041795a4d1SJed Brown 10051795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10061795a4d1SJed Brown 10071795a4d1SJed Brown Concepts: memory allocation 10081795a4d1SJed Brown M*/ 10091795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10101795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10111795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10121795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10131795a4d1SJed Brown || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10141795a4d1SJed Brown 10151795a4d1SJed Brown /*MC 1016503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1017d382aafbSBarry Smith 1018eca87e8dSBarry Smith Synopsis: 1019f2ba6396SBarry Smith #include "petscsys.h" 1020*b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1021eca87e8dSBarry Smith 1022eca87e8dSBarry Smith Not Collective 1023eca87e8dSBarry Smith 1024d382aafbSBarry Smith Output Parameter: 1025*b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1026d382aafbSBarry Smith 1027d382aafbSBarry Smith Level: beginner 1028d382aafbSBarry Smith 1029ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1030d382aafbSBarry Smith 1031d382aafbSBarry Smith Concepts: memory allocation 1032d382aafbSBarry Smith 1033d382aafbSBarry Smith M*/ 1034*b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1035ad0619ddSBarry Smith 1036ad0619ddSBarry Smith /*MC 1037*b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1038ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1039ad0619ddSBarry Smith 1040ad0619ddSBarry Smith Synopsis: 1041f2ba6396SBarry Smith #include "petscsys.h" 1042*b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1043ad0619ddSBarry Smith 1044ad0619ddSBarry Smith Not Collective 1045ad0619ddSBarry Smith 1046ad0619ddSBarry Smith Input Parameter: 1047*b00a9115SJed Brown . obj - object memory is logged to 1048ad0619ddSBarry Smith 1049ad0619ddSBarry Smith Output Parameter: 1050*b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1051ad0619ddSBarry Smith 1052ad0619ddSBarry Smith Level: developer 1053ad0619ddSBarry Smith 1054ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1055ad0619ddSBarry Smith 1056ad0619ddSBarry Smith Concepts: memory allocation 1057ad0619ddSBarry Smith 1058ad0619ddSBarry Smith M*/ 1059*b00a9115SJed Brown #define PetscNewLog(o,b) (PetscNew((b)) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(**(b))) : 0)) 1060d382aafbSBarry Smith 1061d382aafbSBarry Smith /*MC 1062d382aafbSBarry Smith PetscFree - Frees memory 1063d382aafbSBarry Smith 1064eca87e8dSBarry Smith Synopsis: 1065f2ba6396SBarry Smith #include "petscsys.h" 1066eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1067eca87e8dSBarry Smith 1068eca87e8dSBarry Smith Not Collective 1069eca87e8dSBarry Smith 1070d382aafbSBarry Smith Input Parameter: 1071d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1072d382aafbSBarry Smith 1073d382aafbSBarry Smith Level: beginner 1074d382aafbSBarry Smith 1075d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 1076d382aafbSBarry Smith 1077d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith Concepts: memory allocation 1080d382aafbSBarry Smith 1081d382aafbSBarry Smith M*/ 1082efca3c55SSatish Balay #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0))) 1083d382aafbSBarry Smith 1084d382aafbSBarry Smith /*MC 1085d382aafbSBarry Smith PetscFreeVoid - Frees memory 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith Synopsis: 1088f2ba6396SBarry Smith #include "petscsys.h" 1089d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1090d382aafbSBarry Smith 1091eca87e8dSBarry Smith Not Collective 1092eca87e8dSBarry Smith 1093eca87e8dSBarry Smith Input Parameter: 1094eca87e8dSBarry Smith . memory - memory to free 1095eca87e8dSBarry Smith 1096d382aafbSBarry Smith Level: beginner 1097d382aafbSBarry Smith 1098d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1099d382aafbSBarry Smith 1100d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1101d382aafbSBarry Smith 1102d382aafbSBarry Smith Concepts: memory allocation 1103d382aafbSBarry Smith 1104d382aafbSBarry Smith M*/ 1105efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1106d382aafbSBarry Smith 1107d382aafbSBarry Smith 1108d382aafbSBarry Smith /*MC 1109d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1110d382aafbSBarry Smith 1111eca87e8dSBarry Smith Synopsis: 1112f2ba6396SBarry Smith #include "petscsys.h" 1113eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1114eca87e8dSBarry Smith 1115eca87e8dSBarry Smith Not Collective 1116eca87e8dSBarry Smith 1117d382aafbSBarry Smith Input Parameter: 1118d382aafbSBarry Smith + memory1 - memory to free 1119d382aafbSBarry Smith - memory2 - 2nd memory to free 1120d382aafbSBarry Smith 1121d382aafbSBarry Smith Level: developer 1122d382aafbSBarry Smith 1123d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1126d382aafbSBarry Smith 1127d382aafbSBarry Smith Concepts: memory allocation 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith M*/ 1130d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1131d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1132d382aafbSBarry Smith #else 113381dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 1134d382aafbSBarry Smith #endif 1135d382aafbSBarry Smith 1136d382aafbSBarry Smith /*MC 1137d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1138d382aafbSBarry Smith 1139eca87e8dSBarry Smith Synopsis: 1140f2ba6396SBarry Smith #include "petscsys.h" 1141eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1142eca87e8dSBarry Smith 1143eca87e8dSBarry Smith Not Collective 1144eca87e8dSBarry Smith 1145d382aafbSBarry Smith Input Parameter: 1146d382aafbSBarry Smith + memory1 - memory to free 1147d382aafbSBarry Smith . memory2 - 2nd memory to free 1148d382aafbSBarry Smith - memory3 - 3rd memory to free 1149d382aafbSBarry Smith 1150d382aafbSBarry Smith Level: developer 1151d382aafbSBarry Smith 1152d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1153d382aafbSBarry Smith 1154d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith Concepts: memory allocation 1157d382aafbSBarry Smith 1158d382aafbSBarry Smith M*/ 1159d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1160d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1161d382aafbSBarry Smith #else 116281dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 1163d382aafbSBarry Smith #endif 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith /*MC 1166d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1167d382aafbSBarry Smith 1168eca87e8dSBarry Smith Synopsis: 1169f2ba6396SBarry Smith #include "petscsys.h" 1170eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1171eca87e8dSBarry Smith 1172eca87e8dSBarry Smith Not Collective 1173eca87e8dSBarry Smith 1174d382aafbSBarry Smith Input Parameter: 1175d382aafbSBarry Smith + m1 - memory to free 1176d382aafbSBarry Smith . m2 - 2nd memory to free 1177d382aafbSBarry Smith . m3 - 3rd memory to free 1178d382aafbSBarry Smith - m4 - 4th memory to free 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith Level: developer 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1183d382aafbSBarry Smith 1184d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1185d382aafbSBarry Smith 1186d382aafbSBarry Smith Concepts: memory allocation 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith M*/ 1189d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1190d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1191d382aafbSBarry Smith #else 119281dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1193d382aafbSBarry Smith #endif 1194d382aafbSBarry Smith 1195d382aafbSBarry Smith /*MC 1196d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1197d382aafbSBarry Smith 1198eca87e8dSBarry Smith Synopsis: 1199f2ba6396SBarry Smith #include "petscsys.h" 1200eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1201eca87e8dSBarry Smith 1202eca87e8dSBarry Smith Not Collective 1203eca87e8dSBarry Smith 1204d382aafbSBarry Smith Input Parameter: 1205d382aafbSBarry Smith + m1 - memory to free 1206d382aafbSBarry Smith . m2 - 2nd memory to free 1207d382aafbSBarry Smith . m3 - 3rd memory to free 1208d382aafbSBarry Smith . m4 - 4th memory to free 1209d382aafbSBarry Smith - m5 - 5th memory to free 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith Level: developer 1212d382aafbSBarry Smith 1213d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1214d382aafbSBarry Smith 1215d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1216d382aafbSBarry Smith 1217d382aafbSBarry Smith Concepts: memory allocation 1218d382aafbSBarry Smith 1219d382aafbSBarry Smith M*/ 1220d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1221d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1222d382aafbSBarry Smith #else 122381dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1224d382aafbSBarry Smith #endif 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith /*MC 1228d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1229d382aafbSBarry Smith 1230eca87e8dSBarry Smith Synopsis: 1231f2ba6396SBarry Smith #include "petscsys.h" 1232eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1233eca87e8dSBarry Smith 1234eca87e8dSBarry Smith Not Collective 1235eca87e8dSBarry Smith 1236d382aafbSBarry Smith Input Parameter: 1237d382aafbSBarry Smith + m1 - memory to free 1238d382aafbSBarry Smith . m2 - 2nd memory to free 1239d382aafbSBarry Smith . m3 - 3rd memory to free 1240d382aafbSBarry Smith . m4 - 4th memory to free 1241d382aafbSBarry Smith . m5 - 5th memory to free 1242d382aafbSBarry Smith - m6 - 6th memory to free 1243d382aafbSBarry Smith 1244d382aafbSBarry Smith 1245d382aafbSBarry Smith Level: developer 1246d382aafbSBarry Smith 1247d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith Concepts: memory allocation 1252d382aafbSBarry Smith 1253d382aafbSBarry Smith M*/ 1254d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1255d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1256d382aafbSBarry Smith #else 125781dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1258d382aafbSBarry Smith #endif 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith /*MC 1261d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1262d382aafbSBarry Smith 1263eca87e8dSBarry Smith Synopsis: 1264f2ba6396SBarry Smith #include "petscsys.h" 1265eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1266eca87e8dSBarry Smith 1267eca87e8dSBarry Smith Not Collective 1268eca87e8dSBarry Smith 1269d382aafbSBarry Smith Input Parameter: 1270d382aafbSBarry Smith + m1 - memory to free 1271d382aafbSBarry Smith . m2 - 2nd memory to free 1272d382aafbSBarry Smith . m3 - 3rd memory to free 1273d382aafbSBarry Smith . m4 - 4th memory to free 1274d382aafbSBarry Smith . m5 - 5th memory to free 1275d382aafbSBarry Smith . m6 - 6th memory to free 1276d382aafbSBarry Smith - m7 - 7th memory to free 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith Level: developer 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1284d382aafbSBarry Smith PetscMalloc7() 1285d382aafbSBarry Smith 1286d382aafbSBarry Smith Concepts: memory allocation 1287d382aafbSBarry Smith 1288d382aafbSBarry Smith M*/ 1289d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1290d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1291d382aafbSBarry Smith #else 129281dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1293d382aafbSBarry Smith #endif 1294d382aafbSBarry Smith 1295efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1296efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1297efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1299d382aafbSBarry Smith 1300d382aafbSBarry Smith /* 1301a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1302a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1303a5057860SBarry Smith timing etc. 1304a5057860SBarry Smith */ 1305a5057860SBarry Smith typedef double PetscLogDouble; 1306a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1307a5057860SBarry Smith 1308a5057860SBarry Smith /* 130966d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1310d382aafbSBarry Smith */ 1311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13160acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1317efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1319574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1321d382aafbSBarry Smith 1322d382aafbSBarry Smith /*E 1323d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith Level: beginner 1326d382aafbSBarry Smith 1327d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1328d382aafbSBarry Smith 1329d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1330d382aafbSBarry Smith PetscDataTypeGetSize() 1331d382aafbSBarry Smith 1332d382aafbSBarry Smith E*/ 1333d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13342d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 13356a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1336d382aafbSBarry Smith 1337d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1338d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1339d382aafbSBarry Smith #else 1340ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1341d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 134259a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 134359a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1344d382aafbSBarry Smith #else 1345d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1346d382aafbSBarry Smith #endif 1347d382aafbSBarry Smith #endif 1348ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1349d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 135059a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 135159a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1352d382aafbSBarry Smith #else 1353d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1354d382aafbSBarry Smith #endif 1355d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1356d382aafbSBarry Smith 1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 13608e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1361d382aafbSBarry Smith 1362d382aafbSBarry Smith /* 1363d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1364d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1365d382aafbSBarry Smith functionality and/or error checking. 1366d382aafbSBarry Smith */ 1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1371d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 13832f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 13882c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 139147340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 13926fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1394d382aafbSBarry Smith 1395573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1396573b0fb4SBarry Smith 1397d382aafbSBarry Smith /*S 1398d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1399d382aafbSBarry Smith 1400d382aafbSBarry Smith Level: intermediate 1401d382aafbSBarry Smith 1402d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1403d382aafbSBarry Smith S*/ 1404d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1405d382aafbSBarry Smith 1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1409d382aafbSBarry Smith 1410a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1411a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1412a53986e1SJed Brown 1413d382aafbSBarry Smith /* 1414d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1415d382aafbSBarry Smith */ 1416014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14177c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1418014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14192414b3c7SJed Brown #else 14202414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14212414b3c7SJed Brown #endif 14222414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1423014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1424014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1425d9822059SBarry Smith #else 1426d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1427d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1428d9822059SBarry Smith #endif 1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1430d382aafbSBarry Smith 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1433eb3f98d2SBarry Smith 1434d382aafbSBarry Smith /*S 1435d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1436d382aafbSBarry Smith 1437d382aafbSBarry Smith Level: beginner 1438d382aafbSBarry Smith 14392981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1440d382aafbSBarry Smith 14411890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1442d382aafbSBarry Smith S*/ 1443d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1444d382aafbSBarry Smith 1445270bf2e7SJed Brown /*MC 1446127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1447127c8a3bSJed Brown 1448127c8a3bSJed Brown Level: developer 1449127c8a3bSJed Brown 1450127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1451127c8a3bSJed Brown 1452127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1453127c8a3bSJed Brown M*/ 1454127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1455127c8a3bSJed Brown 1456127c8a3bSJed Brown /*MC 1457270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1458270bf2e7SJed Brown 1459270bf2e7SJed Brown Level: developer 1460270bf2e7SJed Brown 1461270bf2e7SJed Brown Notes: 1462270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1463270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1464270bf2e7SJed Brown 14658dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1466270bf2e7SJed Brown M*/ 1467270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1468270bf2e7SJed Brown 1469d382aafbSBarry Smith /*S 1470140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1471d382aafbSBarry Smith by string name 1472d382aafbSBarry Smith 1473d382aafbSBarry Smith Level: advanced 1474d382aafbSBarry Smith 1475140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1476d382aafbSBarry Smith S*/ 1477140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1478d382aafbSBarry Smith 1479d382aafbSBarry Smith /*E 1480d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1481d382aafbSBarry Smith 1482d382aafbSBarry Smith Level: beginner 1483d382aafbSBarry Smith 1484d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1485d382aafbSBarry Smith 1486d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1487d382aafbSBarry Smith 1488d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1489d382aafbSBarry Smith 1490d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1491d382aafbSBarry Smith 1492d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1493d382aafbSBarry Smith 1494d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1495d382aafbSBarry Smith E*/ 1496d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1497d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1498d6a4318aSJed Brown 1499639ff905SBarry Smith /* 1500639ff905SBarry Smith Defines PETSc error handling. 1501639ff905SBarry Smith */ 1502639ff905SBarry Smith #include <petscerror.h> 1503d382aafbSBarry Smith 15040700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1505014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1506014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1508d382aafbSBarry Smith 1509d382aafbSBarry Smith /* 1510d382aafbSBarry Smith Routines that get memory usage information from the OS 1511d382aafbSBarry Smith */ 1512014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1513014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1514014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1515d382aafbSBarry Smith 1516014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1518d382aafbSBarry Smith 1519d382aafbSBarry Smith /* 1520d382aafbSBarry Smith Initialization of PETSc 1521d382aafbSBarry Smith */ 1522014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1525014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1532d382aafbSBarry Smith 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1534607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1535d382aafbSBarry Smith 1536014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD; 1537014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void); 1540014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1543014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1544d382aafbSBarry Smith 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1548014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1549d382aafbSBarry Smith 1550d382aafbSBarry Smith /* 1551d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15522981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1553d382aafbSBarry Smith */ 1554638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1555638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1556638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1557d382aafbSBarry Smith 1558d382aafbSBarry Smith /* 1559d382aafbSBarry Smith Functions that can act on any PETSc object. 1560d382aafbSBarry Smith */ 1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1580bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1581bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1589d382aafbSBarry Smith 1590665c2dedSJed Brown #include <petscviewertypes.h> 1591639ff905SBarry Smith #include <petscoptions.h> 1592639ff905SBarry Smith 1593639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1594dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1595639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 15960005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 15970005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1610d382aafbSBarry Smith 1611e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16127aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1613e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1614e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1615e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1616e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1617e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1618e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1619e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1620e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1621e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 162215681b3cSBarry Smith 1623ec7429eaSBarry Smith #else 16247aab2a10SBarry Smith #define PetscSAWsBlock() 0 1625e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1626e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1627e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1628e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1629e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1630e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1631e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1632e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1633e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 163415681b3cSBarry Smith 1635ec7429eaSBarry Smith #endif 1636b90c6cbeSBarry Smith 16377d5d4d99SBarry Smith typedef void* PetscDLHandle; 1638e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 163982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 164082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 164182b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16427d5d4d99SBarry Smith 1643d382aafbSBarry Smith 16445fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1645a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16465fe58b6fSBarry Smith #endif 16477eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1648a64a8e02SBarry Smith 1649d382aafbSBarry Smith /*S 1650140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1651d382aafbSBarry Smith 16521d0fab5eSBarry Smith Level: developer 1653d382aafbSBarry Smith 16541d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16551d0fab5eSBarry Smith 1656140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1657d382aafbSBarry Smith S*/ 1658140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1659d382aafbSBarry Smith 1660140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1661140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1662140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1663140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1664140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1665140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1666d382aafbSBarry Smith 1667d382aafbSBarry Smith /* 1668503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1669d382aafbSBarry Smith link libraries that will be loaded as needed. 1670d382aafbSBarry Smith */ 1671a240a19fSJed Brown 1672a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1673a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1674140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 16751c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 16761c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1677140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1678140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1679140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1680140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1681d382aafbSBarry Smith 1682d382aafbSBarry Smith /*S 1683d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1684d382aafbSBarry Smith 1685d382aafbSBarry Smith Level: advanced 1686d382aafbSBarry Smith 1687d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1688d382aafbSBarry Smith S*/ 1689d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1690014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1697014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1698d382aafbSBarry Smith 1699d382aafbSBarry Smith /* 1700d382aafbSBarry Smith Useful utility routines 1701d382aafbSBarry Smith */ 1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1706014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1708d382aafbSBarry Smith 1709503cfb0cSBarry Smith /* 1710ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1711503cfb0cSBarry Smith 1712503cfb0cSBarry Smith Notes: This is useful in cases like 1713503cfb0cSBarry Smith $ int *a; 1714ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1715ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1716503cfb0cSBarry Smith */ 1717d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1718503cfb0cSBarry Smith 1719cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1720cae2f346SBarry Smith # include <valgrind/valgrind.h> 1721cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1722cae2f346SBarry Smith #else 1723cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1724cae2f346SBarry Smith #endif 1725cae2f346SBarry Smith 1726238ccf28SShri Abhyankar 1727d382aafbSBarry Smith /*MC 1728d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1729d382aafbSBarry Smith 1730d382aafbSBarry Smith Synopsis: 1731f2ba6396SBarry Smith #include "petscsys.h" 1732d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1733d382aafbSBarry Smith 1734eca87e8dSBarry Smith Not Collective 1735eca87e8dSBarry Smith 1736d382aafbSBarry Smith Input Parameters: 1737d382aafbSBarry Smith . format - the usual printf() format string 1738d382aafbSBarry Smith 1739d382aafbSBarry Smith Level: developer 1740d382aafbSBarry Smith 1741d382aafbSBarry Smith Fortran Note: 1742d382aafbSBarry Smith This routine is not supported in Fortran. 1743d382aafbSBarry Smith 1744d382aafbSBarry Smith Concepts: help messages^printing 1745d382aafbSBarry Smith Concepts: printing^help messages 1746d382aafbSBarry Smith 1747d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1748d382aafbSBarry Smith M*/ 1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1750d382aafbSBarry Smith 1751fcfd50ebSBarry Smith /* 1752fcfd50ebSBarry Smith Defines PETSc profiling. 1753fcfd50ebSBarry Smith */ 17542c8e378dSBarry Smith #include <petsclog.h> 1755fcfd50ebSBarry Smith 1756b90c6cbeSBarry Smith 1757fcfd50ebSBarry Smith 1758fcfd50ebSBarry Smith /* 1759fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1760fcfd50ebSBarry Smith */ 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1768fcfd50ebSBarry Smith 1769fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1770fcfd50ebSBarry Smith #include <stdarg.h> 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1774fcfd50ebSBarry Smith 1775fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1777fcfd50ebSBarry Smith #endif 1778fcfd50ebSBarry Smith 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1782d382aafbSBarry Smith 1783d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 178596a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 178674ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1787d382aafbSBarry Smith #endif 1788d382aafbSBarry Smith 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 17910ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1796d382aafbSBarry Smith 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1798d382aafbSBarry Smith 1799d382aafbSBarry Smith /*S 1800d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1801d382aafbSBarry Smith 1802d382aafbSBarry Smith Level: advanced 1803d382aafbSBarry Smith 1804d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1805d382aafbSBarry Smith S*/ 1806014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1807d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith /* 1815d382aafbSBarry Smith For use in debuggers 1816d382aafbSBarry Smith */ 1817014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1818014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1822d382aafbSBarry Smith 1823a663daf8SBarry Smith #include <stddef.h> 1824d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1825d382aafbSBarry Smith #include <memory.h> 1826d382aafbSBarry Smith #endif 1827d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1828d382aafbSBarry Smith #include <stdlib.h> 1829d382aafbSBarry Smith #endif 18306c7e564aSBarry Smith 18314a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1832d382aafbSBarry Smith #include <xmmintrin.h> 1833d382aafbSBarry Smith #endif 1834d382aafbSBarry Smith 1835fcfd50ebSBarry Smith #undef __FUNCT__ 1836fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1837d382aafbSBarry Smith /*@C 1838d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1839d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1840d382aafbSBarry Smith PetscMemmove() in that case. 1841d382aafbSBarry Smith 1842d382aafbSBarry Smith Not Collective 1843d382aafbSBarry Smith 1844d382aafbSBarry Smith Input Parameters: 1845d382aafbSBarry Smith + b - pointer to initial memory space 1846d382aafbSBarry Smith - n - length (in bytes) of space to copy 1847d382aafbSBarry Smith 1848d382aafbSBarry Smith Output Parameter: 1849d382aafbSBarry Smith . a - pointer to copy space 1850d382aafbSBarry Smith 1851d382aafbSBarry Smith Level: intermediate 1852d382aafbSBarry Smith 1853d382aafbSBarry Smith Compile Option: 1854d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1855d382aafbSBarry Smith for memory copies on double precision values. 1856d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1857d382aafbSBarry Smith for memory copies on double precision values. 1858d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1859d382aafbSBarry Smith for memory copies on double precision values. 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith Note: 1862d382aafbSBarry Smith This routine is analogous to memcpy(). 1863d382aafbSBarry Smith 1864503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1865503cfb0cSBarry Smith 1866d382aafbSBarry Smith Concepts: memory^copying 1867d382aafbSBarry Smith Concepts: copying^memory 1868d382aafbSBarry Smith 1869d382aafbSBarry Smith .seealso: PetscMemmove() 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith @*/ 18727087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1873d382aafbSBarry Smith { 1874d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1875d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1876d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1877a7e36092SMatthew G Knepley PetscFunctionBegin; 1878e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1879e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1880a7e36092SMatthew G Knepley #else 1881d382aafbSBarry Smith PetscFunctionBegin; 1882a7e36092SMatthew G Knepley #endif 1883d382aafbSBarry Smith if (a != b) { 1884d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1885e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1886d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1887d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1888d382aafbSBarry Smith #endif 1889d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1890d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1891d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1892d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1893c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1894c5df96a5SBarry Smith PetscErrorCode ierr; 1895c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 18968b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1897d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1898d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1899d382aafbSBarry Smith #else 1900d382aafbSBarry Smith size_t i; 1901d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1902d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1903d382aafbSBarry Smith #endif 1904d382aafbSBarry Smith } else { 1905d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1906d382aafbSBarry Smith } 1907d382aafbSBarry Smith #else 1908d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1909d382aafbSBarry Smith #endif 1910d382aafbSBarry Smith } 1911d382aafbSBarry Smith PetscFunctionReturn(0); 1912d382aafbSBarry Smith } 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith /*@C 1915d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1916d382aafbSBarry Smith 1917d382aafbSBarry Smith Not Collective 1918d382aafbSBarry Smith 1919d382aafbSBarry Smith Input Parameters: 1920d382aafbSBarry Smith + a - pointer to beginning memory location 1921d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith Level: intermediate 1924d382aafbSBarry Smith 1925d382aafbSBarry Smith Compile Option: 1926d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1927d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1928d382aafbSBarry Smith 1929503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1930503cfb0cSBarry Smith 1931d382aafbSBarry Smith Concepts: memory^zeroing 1932d382aafbSBarry Smith Concepts: zeroing^memory 1933d382aafbSBarry Smith 1934d382aafbSBarry Smith .seealso: PetscMemcpy() 1935d382aafbSBarry Smith @*/ 19367087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1937d382aafbSBarry Smith { 1938d382aafbSBarry Smith if (n > 0) { 1939d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1940e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1943d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1944d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1945d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1946d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1947d382aafbSBarry Smith } else { 1948d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1949d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1950d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1951d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1952d382aafbSBarry Smith } else { 1953d382aafbSBarry Smith #endif 1954d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1955d382aafbSBarry Smith bzero((char *)a,n); 1956d382aafbSBarry Smith #else 1957d382aafbSBarry Smith memset((char*)a,0,n); 1958d382aafbSBarry Smith #endif 1959d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1960d382aafbSBarry Smith } 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith } 1963d382aafbSBarry Smith return 0; 1964d382aafbSBarry Smith } 1965d382aafbSBarry Smith 1966d382aafbSBarry Smith /*MC 1967d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1968d382aafbSBarry Smith 1969eca87e8dSBarry Smith Synopsis: 1970f2ba6396SBarry Smith #include "petscsys.h" 1971eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1972eca87e8dSBarry Smith 1973d382aafbSBarry Smith Not Collective 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith Input Parameters: 1976d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1977d382aafbSBarry Smith . n - number of elements to fetch 1978d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 197950d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith Level: developer 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith Notes: 1984d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1985d382aafbSBarry Smith 198650d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 198750d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 198850d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 198963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 199063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 199163cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1992d382aafbSBarry Smith 1993d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1994d382aafbSBarry Smith address). 1995d382aafbSBarry Smith 1996d382aafbSBarry Smith Concepts: memory 1997d382aafbSBarry Smith M*/ 1998d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1999d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2000d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2001d382aafbSBarry Smith } while (0) 2002d382aafbSBarry Smith 2003d382aafbSBarry Smith /* 2004d382aafbSBarry Smith Determine if some of the kernel computation routines use 2005d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2006d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2007d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2008e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2009d382aafbSBarry Smith */ 2010d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2011d382aafbSBarry Smith 2012d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2013d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2014d382aafbSBarry Smith #endif 2015d382aafbSBarry Smith 20165a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20175a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2018d382aafbSBarry Smith #endif 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2021d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2022d382aafbSBarry Smith #endif 2023d382aafbSBarry Smith 2024d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2025d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2026d382aafbSBarry Smith #endif 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2029d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2030d382aafbSBarry Smith #endif 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2033d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2034d382aafbSBarry Smith #endif 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2037d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2038d382aafbSBarry Smith #endif 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2041d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2042d382aafbSBarry Smith #endif 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2045d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2046d382aafbSBarry Smith #endif 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2049d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2050d382aafbSBarry Smith #endif 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2053d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2057d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2058d382aafbSBarry Smith #endif 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2061d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2062d382aafbSBarry Smith #endif 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2065d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2066d382aafbSBarry Smith #endif 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith #endif 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith /* 2071d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2072d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2073d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2074d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2075d382aafbSBarry Smith ugly extern "C" {} wrappers. 2076d382aafbSBarry Smith */ 2077d382aafbSBarry Smith #if defined(__cplusplus) 2078d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2079d382aafbSBarry Smith #define EXTERN_C_END } 2080d382aafbSBarry Smith #else 2081d382aafbSBarry Smith #define EXTERN_C_BEGIN 2082d382aafbSBarry Smith #define EXTERN_C_END 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2086d382aafbSBarry Smith 2087d382aafbSBarry Smith /*MC 2088d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2089d382aafbSBarry Smith communication 2090d382aafbSBarry Smith 2091d382aafbSBarry Smith Level: beginner 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2094d382aafbSBarry Smith 2095d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2096d382aafbSBarry Smith M*/ 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith /*MC 2099d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2100d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2101d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2102d382aafbSBarry Smith 2103d382aafbSBarry Smith 2104d382aafbSBarry Smith Level: beginner 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2107d382aafbSBarry Smith M*/ 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith /*MC 21108619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21118619c96cSJed Brown 21128619c96cSJed Brown Synopsis: 21138619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 21148619c96cSJed Brown #include <petscsys.h> 21158619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21168619c96cSJed Brown 21178619c96cSJed Brown Level: beginner 21188619c96cSJed Brown 21198619c96cSJed Brown Note: 21208619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 21218619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 21228619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 21238619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 21248619c96cSJed Brown 21258619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21268619c96cSJed Brown M*/ 21278619c96cSJed Brown 21288619c96cSJed Brown /*MC 2129d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith Level: beginner 2132d382aafbSBarry Smith 2133d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2134d382aafbSBarry Smith M*/ 2135d382aafbSBarry Smith 2136d382aafbSBarry Smith /*MC 2137d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2138d382aafbSBarry Smith Level: beginner 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2141d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2142d382aafbSBarry Smith 2143d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2144d382aafbSBarry Smith M*/ 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith /*MC 2147d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith Level: beginner 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2152d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2155d382aafbSBarry Smith M*/ 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith /*MC 2158d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith Level: beginner 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2163d382aafbSBarry Smith pass this value 2164d382aafbSBarry Smith 2165d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2166d382aafbSBarry Smith M*/ 2167d382aafbSBarry Smith 2168d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2169d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2170014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2171014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2172d382aafbSBarry Smith #else 2173d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2174d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2175d382aafbSBarry Smith #endif 2176d382aafbSBarry Smith #endif 2177d382aafbSBarry Smith 2178d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2179d382aafbSBarry Smith 2180d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2181d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2182d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2183d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2184d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2185d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2186d382aafbSBarry Smith 2187c5df96a5SBarry Smith #undef __FUNCT__ 2188c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 2189c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2190c5df96a5SBarry Smith { 2191c5df96a5SBarry Smith PetscFunctionBegin; 2192c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2193c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2194c5df96a5SBarry Smith #endif 2195c5df96a5SBarry Smith *b = (PetscBLASInt)(a); 2196c5df96a5SBarry Smith PetscFunctionReturn(0); 2197c5df96a5SBarry Smith } 2198c5df96a5SBarry Smith 21994dc2109aSBarry Smith #undef __FUNCT__ 22004dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 22014dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22024dc2109aSBarry Smith { 22034dc2109aSBarry Smith PetscFunctionBegin; 22044dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22054dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22064dc2109aSBarry Smith #endif 22074dc2109aSBarry Smith *b = (PetscMPIInt)(a); 22084dc2109aSBarry Smith PetscFunctionReturn(0); 22094dc2109aSBarry Smith } 22104dc2109aSBarry Smith 2211c5df96a5SBarry Smith 2212d382aafbSBarry Smith /* 22132981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2214d382aafbSBarry Smith */ 2215d382aafbSBarry Smith #if defined(hz) 2216d382aafbSBarry Smith #undef hz 2217d382aafbSBarry Smith #endif 2218d382aafbSBarry Smith 2219d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2220d382aafbSBarry Smith 2221d382aafbSBarry Smith 2222d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2223d382aafbSBarry Smith #include <limits.h> 2224d382aafbSBarry Smith #endif 2225d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2226d382aafbSBarry Smith #include <sys/param.h> 2227d382aafbSBarry Smith #endif 2228d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2229d382aafbSBarry Smith #include <sys/types.h> 2230d382aafbSBarry Smith #endif 2231d382aafbSBarry Smith #if defined(MAXPATHLEN) 2232d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2233d382aafbSBarry Smith #elif defined(MAX_PATH) 2234d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2235d382aafbSBarry Smith #elif defined(_MAX_PATH) 2236d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2237d382aafbSBarry Smith #else 2238d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2239d382aafbSBarry Smith #endif 2240d382aafbSBarry Smith 2241d382aafbSBarry Smith /* Special support for C++ */ 22422c280183SJed Brown #if defined(PETSC_CLANGUAGE_CXX) && defined(__cplusplus) 22432c8e378dSBarry Smith #include <petscsys.hh> 22442c8e378dSBarry Smith #endif 22456c7e564aSBarry Smith 2246d382aafbSBarry Smith /*MC 2247d382aafbSBarry Smith 2248d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2249d382aafbSBarry Smith 2250d382aafbSBarry Smith $ 1) classic Fortran 77 style 2251d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2252d382aafbSBarry Smith $ XXX variablename 2253d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2254d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2255d382aafbSBarry Smith $ 2256d382aafbSBarry Smith $ 2) classic Fortran 90 style 2257d1716517SSatish Balay $#include "finclude/petscXXX.h" 2258d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2259d382aafbSBarry Smith $ XXX variablename 2260d382aafbSBarry Smith $ 2261d382aafbSBarry Smith $ 3) Using Fortran modules 2262d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2263d382aafbSBarry Smith $ use petscXXXX 2264d382aafbSBarry Smith $ XXX variablename 2265d382aafbSBarry Smith $ 2266d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2267d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2268d382aafbSBarry Smith $ use petscXXXX 2269d382aafbSBarry Smith $ type(XXX) variablename 2270e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2271d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2272d382aafbSBarry Smith 2273d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2274d382aafbSBarry Smith 2275d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2276d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2277d382aafbSBarry Smith $ integer variablename 2278d382aafbSBarry Smith $ 2279d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2280d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2281d382aafbSBarry Smith 2282d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2283d382aafbSBarry Smith for only a few PETSc functions. 2284d382aafbSBarry Smith 2285d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2286d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2287d382aafbSBarry Smith you cannot have something like 2288d382aafbSBarry Smith $ PetscInt row,col 2289d382aafbSBarry Smith $ PetscScalar val 2290d382aafbSBarry Smith $ ... 2291d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2292d382aafbSBarry Smith You must instead have 2293d382aafbSBarry Smith $ PetscInt row(1),col(1) 2294d382aafbSBarry Smith $ PetscScalar val(1) 2295d382aafbSBarry Smith $ ... 2296d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2297d382aafbSBarry Smith 2298d382aafbSBarry Smith 2299d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2300d382aafbSBarry Smith 2301d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2302d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2303d382aafbSBarry Smith 2304d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2305d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2306d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2307d382aafbSBarry Smith 2308d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2309e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2310d382aafbSBarry Smith 2311d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2312d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2313d382aafbSBarry Smith 2314d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2315d382aafbSBarry Smith automatically by "make allfortranstubs". 2316d382aafbSBarry Smith 2317e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2318d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2319d382aafbSBarry Smith include their predecessors 2320d382aafbSBarry Smith 2321d382aafbSBarry Smith Level: beginner 2322d382aafbSBarry Smith 2323d382aafbSBarry Smith M*/ 2324d382aafbSBarry Smith 2325014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 233127710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2332d382aafbSBarry Smith 2333014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 233560e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2336014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2337014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2339014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 234017d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 234117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2342014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2345014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2346745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2351d382aafbSBarry Smith 2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2354d382aafbSBarry Smith 235576bdecfbSBarry Smith /*J 2356d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2357d382aafbSBarry Smith 2358d382aafbSBarry Smith Level: beginner 2359d382aafbSBarry Smith 2360e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2361d382aafbSBarry Smith with the option --download-sprng 2362d382aafbSBarry Smith 23638f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 236476bdecfbSBarry Smith J*/ 236519fd82e9SBarry Smith typedef const char* PetscRandomType; 2366d382aafbSBarry Smith #define PETSCRAND "rand" 2367d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2368d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2369d382aafbSBarry Smith 2370d382aafbSBarry Smith /* Logging support */ 2371014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2372d382aafbSBarry Smith 2373607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2374d382aafbSBarry Smith 2375d382aafbSBarry Smith /*S 2376d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2377d382aafbSBarry Smith 2378d382aafbSBarry Smith Level: intermediate 2379d382aafbSBarry Smith 2380d382aafbSBarry Smith Concepts: random numbers 2381d382aafbSBarry Smith 2382d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2383d382aafbSBarry Smith S*/ 2384d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2385d382aafbSBarry Smith 2386d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2387140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2388014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2389d382aafbSBarry Smith 2390607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2391bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 239219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2393014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 239419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2395146574abSBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,const char[],const char[]); 2396014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2397d382aafbSBarry Smith 2398014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2407d382aafbSBarry Smith 2408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2411014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2415d382aafbSBarry Smith 2416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2427e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2429d382aafbSBarry Smith 2430d382aafbSBarry Smith /* 2431d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2432d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2433d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2434d382aafbSBarry Smith PetscBinarySeek(). 2435d382aafbSBarry Smith */ 2436d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2437d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2438d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2439d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2440d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2441d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2442d382aafbSBarry Smith 2443d382aafbSBarry Smith /*E 2444d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2445d382aafbSBarry Smith 2446d382aafbSBarry Smith Level: advanced 2447d382aafbSBarry Smith 2448d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2449d382aafbSBarry Smith E*/ 2450d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2454d382aafbSBarry Smith 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2461d382aafbSBarry Smith 2462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2467f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2468d382aafbSBarry Smith 24696145cd65SJed Brown /*E 24706145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 24716145cd65SJed Brown 24726145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 24736145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 24746145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 24756145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 24766145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 24776145cd65SJed Brown 24786145cd65SJed Brown Level: developer 24796145cd65SJed Brown 24806145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 24816145cd65SJed Brown E*/ 24826145cd65SJed Brown typedef enum { 24836145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 24846145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 24856145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 24866145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 24876145cd65SJed Brown } PetscBuildTwoSidedType; 24886145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 24896145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 24906145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 24916145cd65SJed Brown 2492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2493d382aafbSBarry Smith 2494d382aafbSBarry Smith /*E 2495d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2496d382aafbSBarry Smith 2497d382aafbSBarry Smith Level: beginner 2498d382aafbSBarry Smith 2499d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2500d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2501d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2502d382aafbSBarry Smith E*/ 25036fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2504d382aafbSBarry Smith 2505d382aafbSBarry Smith /*MC 2506d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2507d382aafbSBarry Smith 2508d382aafbSBarry Smith Level: beginner 2509d382aafbSBarry Smith 2510d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2511eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2512eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2513d382aafbSBarry Smith 2514d382aafbSBarry Smith M*/ 2515d382aafbSBarry Smith 2516d382aafbSBarry Smith /*MC 2517d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2518d382aafbSBarry Smith value into that location 2519d382aafbSBarry Smith 2520d382aafbSBarry Smith Level: beginner 2521d382aafbSBarry Smith 2522d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2523eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2524eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2525d382aafbSBarry Smith 2526d382aafbSBarry Smith M*/ 2527d382aafbSBarry Smith 2528d382aafbSBarry Smith /*MC 2529d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2530d382aafbSBarry Smith 2531d382aafbSBarry Smith Level: beginner 2532d382aafbSBarry Smith 2533d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2534d382aafbSBarry Smith 2535d382aafbSBarry Smith M*/ 2536d382aafbSBarry Smith 2537ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2538ce94432eSBarry Smith 253945487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 254045487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 254145487dadSJed Brown 2542d382aafbSBarry Smith /*S 2543d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2544d382aafbSBarry Smith 2545d382aafbSBarry Smith Level: advanced 2546d382aafbSBarry Smith 2547d382aafbSBarry Smith Concepts: communicator, create 2548d382aafbSBarry Smith S*/ 2549d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2550d382aafbSBarry Smith 2551d382aafbSBarry Smith struct _n_PetscSubcomm { 2552d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2553d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2554d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 255545487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 255645487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2557708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 255845487dadSJed Brown PetscSubcommType type; 2559d382aafbSBarry Smith }; 2560d382aafbSBarry Smith 2561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 256565d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2566053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2567f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2568d382aafbSBarry Smith 25690f453b92SJed Brown /*S 25700f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 25710f453b92SJed Brown 25720f453b92SJed Brown Level: developer 25730f453b92SJed Brown 25740f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 25750f453b92SJed Brown S*/ 25760f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 257713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 25780f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 257913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2580137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2581137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2582137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 258313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 258413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 25850f453b92SJed Brown 2586471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2587471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2588471ecdacSJed Brown * possible. */ 2589f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2590d382aafbSBarry Smith 2591dff31646SBarry Smith extern PetscSegBuffer PetscCitationsList; 25921f817a21SBarry Smith #undef __FUNCT__ 25931f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 25941f817a21SBarry Smith /*@C 25951f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 25961f817a21SBarry Smith 25971f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 25981f817a21SBarry Smith 25991f817a21SBarry Smith Input Parameters: 26001f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 26011f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 26021f817a21SBarry Smith 2603850545d0SSatish Balay Level: intermediate 2604850545d0SSatish Balay 26051f817a21SBarry Smith Options Database: 26061f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 26071f817a21SBarry Smith @*/ 2608dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2609dff31646SBarry Smith { 2610dff31646SBarry Smith size_t len; 2611dff31646SBarry Smith char *vstring; 2612dff31646SBarry Smith PetscErrorCode ierr; 2613dff31646SBarry Smith 26141f817a21SBarry Smith PetscFunctionBegin; 26158d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2616dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2617dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2618dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2619dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26201f817a21SBarry Smith PetscFunctionReturn(0); 2621dff31646SBarry Smith } 2622dff31646SBarry Smith 2623dff31646SBarry Smith 2624d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2625d382aafbSBarry Smith #undef __FUNCT__ 2626d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2627d382aafbSBarry Smith 2628d382aafbSBarry Smith #endif 2629