xref: /petsc/include/petscsys.h (revision b0c94c628c395145fa80746cab97db12ce9bea62)
1d382aafbSBarry Smith /*
2d382aafbSBarry Smith    This is the main PETSc include file (for C and C++).  It is included by all
3d382aafbSBarry Smith    other PETSc include files, so it almost never has to be specifically included.
4d382aafbSBarry Smith */
56c7e564aSBarry Smith #if !defined(__PETSCSYS_H)
66c7e564aSBarry Smith #define __PETSCSYS_H
7d382aafbSBarry Smith /* ========================================================================== */
8d382aafbSBarry Smith /*
9d382aafbSBarry Smith    petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is
10d382aafbSBarry Smith    found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include
11d382aafbSBarry Smith    in the conf/variables definition of PETSC_INCLUDE
12d382aafbSBarry Smith */
13d382aafbSBarry Smith #include "petscconf.h"
14d382aafbSBarry Smith #include "petscfix.h"
15d382aafbSBarry Smith 
1673fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS)
1773fca5a0SBarry Smith /*
1873fca5a0SBarry Smith    Feature test macros must be included before headers defined by IEEE Std 1003.1-2001
1973fca5a0SBarry Smith    We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS
2073fca5a0SBarry Smith */
21216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE)
2273fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L
2373fca5a0SBarry Smith #endif
24216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE)
2573fca5a0SBarry Smith #define _BSD_SOURCE
2673fca5a0SBarry Smith #endif
2773fca5a0SBarry Smith #endif
2873fca5a0SBarry Smith 
29d382aafbSBarry Smith /* ========================================================================== */
30d382aafbSBarry Smith /*
31d382aafbSBarry Smith    This facilitates using C version of PETSc from C++ and
32e2e64c6bSBarry Smith    C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter)
33d382aafbSBarry Smith */
34d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus)
35d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler"
36d382aafbSBarry Smith #endif
371ec50b02SJed Brown 
381ec50b02SJed Brown #if defined(__cplusplus)
391ec50b02SJed Brown #  define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX
401ec50b02SJed Brown #else
411ec50b02SJed Brown #  define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C
421ec50b02SJed Brown #endif
43d382aafbSBarry Smith 
44d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus)
45da861ed6SJed Brown #define PETSC_EXTERN extern "C"
46d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" {
47d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END  }
48d382aafbSBarry Smith #else
49da861ed6SJed Brown #define PETSC_EXTERN extern
50d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN
51d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END
52d382aafbSBarry Smith #endif
53d382aafbSBarry Smith /* ========================================================================== */
54d382aafbSBarry Smith /*
55d382aafbSBarry Smith    Current PETSc version number and release date. Also listed in
56d382aafbSBarry Smith     Web page
57d382aafbSBarry Smith     src/docs/tex/manual/intro.tex,
58d382aafbSBarry Smith     src/docs/tex/manual/manual.tex.
59d382aafbSBarry Smith     src/docs/website/index.html.
60d382aafbSBarry Smith */
61d382aafbSBarry Smith #include "petscversion.h"
62301d30feSBarry Smith #define PETSC_AUTHOR_INFO        "       The PETSc Team\n    petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n"
63d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1)
64301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \
65d382aafbSBarry Smith                                          PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \
66301d30feSBarry Smith 					 PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE)
67d382aafbSBarry Smith #else
68301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s  HG Date: %s", \
69301d30feSBarry Smith                                         PETSC_VERSION_HG, PETSC_VERSION_DATE_HG)
70d382aafbSBarry Smith #endif
71d382aafbSBarry Smith 
72d382aafbSBarry Smith /*MC
73d382aafbSBarry Smith     PetscGetVersion - Gets the PETSc version information in a string.
74d382aafbSBarry Smith 
75d382aafbSBarry Smith     Input Parameter:
76d382aafbSBarry Smith .   len - length of the string
77d382aafbSBarry Smith 
78d382aafbSBarry Smith     Output Parameter:
79d382aafbSBarry Smith .   version - version string
80d382aafbSBarry Smith 
81d382aafbSBarry Smith     Level: developer
82d382aafbSBarry Smith 
83d382aafbSBarry Smith     Usage:
84d382aafbSBarry Smith     char version[256];
85d382aafbSBarry Smith     ierr = PetscGetVersion(version,256);CHKERRQ(ierr)
86d382aafbSBarry Smith 
87d382aafbSBarry Smith     Fortran Note:
88d382aafbSBarry Smith     This routine is not supported in Fortran.
89d382aafbSBarry Smith 
90d382aafbSBarry Smith .seealso: PetscGetProgramName()
91d382aafbSBarry Smith 
92d382aafbSBarry Smith M*/
93d382aafbSBarry Smith 
94d382aafbSBarry Smith /* ========================================================================== */
95d382aafbSBarry Smith 
96d382aafbSBarry Smith /*
97d382aafbSBarry Smith     Defines the interface to MPI allowing the use of all MPI functions.
98d382aafbSBarry Smith 
99d382aafbSBarry Smith     PETSc does not use the C++ binding of MPI at ALL. The following flag
100d382aafbSBarry Smith     makes sure the C++ bindings are not included. The C++ bindings REQUIRE
101d382aafbSBarry Smith     putting mpi.h before ANY C++ include files, we cannot control this
102d382aafbSBarry Smith     with all PETSc users. Users who want to use the MPI C++ bindings can include
103d382aafbSBarry Smith     mpicxx.h directly in their code
104d382aafbSBarry Smith */
105d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1
106d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1
107d382aafbSBarry Smith #include "mpi.h"
10865013866SBarry Smith 
109d382aafbSBarry Smith /*
110d382aafbSBarry Smith     Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler
111d382aafbSBarry Smith     see the top of mpicxx.h in the MPICH2 distribution.
112d382aafbSBarry Smith 
113d382aafbSBarry Smith     The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense.
114d382aafbSBarry Smith */
115d382aafbSBarry Smith #include <stdio.h>
116d382aafbSBarry Smith 
117d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */
118d382aafbSBarry Smith #if !defined(MPIAPI)
119d382aafbSBarry Smith #define MPIAPI
120d382aafbSBarry Smith #endif
121d382aafbSBarry Smith 
122b3506946SBarry Smith 
123d382aafbSBarry Smith /*MC
124d382aafbSBarry Smith     PetscErrorCode - datatype used for return error code from all PETSc functions
125d382aafbSBarry Smith 
126d382aafbSBarry Smith     Level: beginner
127d382aafbSBarry Smith 
128d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ
129d382aafbSBarry Smith M*/
130d382aafbSBarry Smith typedef int PetscErrorCode;
131d382aafbSBarry Smith 
132d382aafbSBarry Smith /*MC
133d382aafbSBarry Smith 
134503cfb0cSBarry Smith     PetscClassId - A unique id used to identify each PETSc class.
135d382aafbSBarry Smith          (internal integer in the data structure used for error
136d382aafbSBarry Smith          checking). These are all defined by an offset from the lowest
1370700a824SBarry Smith          one, PETSC_SMALLEST_CLASSID.
138d382aafbSBarry Smith 
139d382aafbSBarry Smith     Level: advanced
140d382aafbSBarry Smith 
1410700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate()
142d382aafbSBarry Smith M*/
1430700a824SBarry Smith typedef int PetscClassId;
144d382aafbSBarry Smith 
145d382aafbSBarry Smith 
146d382aafbSBarry Smith /*MC
147d382aafbSBarry Smith     PetscMPIInt - datatype used to represent 'int' parameters to MPI functions.
148d382aafbSBarry Smith 
149d382aafbSBarry Smith     Level: intermediate
150d382aafbSBarry Smith 
151d382aafbSBarry Smith     Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but
1523b2a8c54SBarry Smith            standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit
153d382aafbSBarry Smith 
1543b2a8c54SBarry Smith     PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a
155d382aafbSBarry Smith       PETSC_ERR_ARG_OUTOFRANGE.
156d382aafbSBarry Smith 
1573b2a8c54SBarry Smith     PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it
158d382aafbSBarry Smith       generates a PETSC_ERR_ARG_OUTOFRANGE
159d382aafbSBarry Smith 
160d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt
161d382aafbSBarry Smith 
162d382aafbSBarry Smith M*/
163d382aafbSBarry Smith typedef int PetscMPIInt;
164d382aafbSBarry Smith 
165d382aafbSBarry Smith /*MC
166d382aafbSBarry Smith     PetscEnum - datatype used to pass enum types within PETSc functions.
167d382aafbSBarry Smith 
168d382aafbSBarry Smith     Level: intermediate
169d382aafbSBarry Smith 
170d382aafbSBarry Smith     PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a
171d382aafbSBarry Smith       PETSC_ERR_ARG_OUTOFRANGE.
172d382aafbSBarry Smith 
173d382aafbSBarry Smith     PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it
174d382aafbSBarry Smith       generates a PETSC_ERR_ARG_OUTOFRANGE
175d382aafbSBarry Smith 
176d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum()
177d382aafbSBarry Smith M*/
178d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum;
179d382aafbSBarry Smith 
180d382aafbSBarry Smith /*MC
181d382aafbSBarry Smith     PetscInt - PETSc type that represents integer - used primarily to
1823b2a8c54SBarry Smith       represent size of arrays and indexing into arrays. Its size can be configured with the option
183d382aafbSBarry Smith       --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints]
184d382aafbSBarry Smith 
185d382aafbSBarry Smith    Level: intermediate
186d382aafbSBarry Smith 
187d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt
188d382aafbSBarry Smith M*/
189f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8)
190f505b413SSatish Balay typedef long long Petsc64bitInt;
191f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64)
192236ed0a3SSatish Balay typedef __int64 Petsc64bitInt;
193236ed0a3SSatish Balay #else
194f505b413SSatish Balay typedef unknown64bit Petsc64bitInt
195236ed0a3SSatish Balay #endif
196d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES)
197236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt;
198d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT
199d382aafbSBarry Smith #else
200d382aafbSBarry Smith typedef int PetscInt;
201d382aafbSBarry Smith #define MPIU_INT MPI_INT
202d382aafbSBarry Smith #endif
203236ed0a3SSatish Balay 
204d382aafbSBarry Smith 
205702bc34aSSatish Balay /*MC
206702bc34aSSatish Balay     PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions.
207702bc34aSSatish Balay 
208702bc34aSSatish Balay     Level: intermediate
209702bc34aSSatish Balay 
210702bc34aSSatish Balay     Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but
211702bc34aSSatish Balay            standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit
212702bc34aSSatish Balay            (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below).
213702bc34aSSatish Balay 
214702bc34aSSatish Balay     PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a
215702bc34aSSatish Balay       PETSC_ERR_ARG_OUTOFRANGE.
216702bc34aSSatish Balay 
217702bc34aSSatish Balay     PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it
218702bc34aSSatish Balay       generates a PETSC_ERR_ARG_OUTOFRANGE
219702bc34aSSatish Balay 
220702bc34aSSatish Balay     Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc,
221702bc34aSSatish Balay      if you run ./configure with the option
222702bc34aSSatish Balay      --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib]
223702bc34aSSatish Balay      for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can
224702bc34aSSatish Balay      purchase a 64 bit integer version of the MKL and use that with a  PetscBLASInt of long int.
225702bc34aSSatish Balay 
226702bc34aSSatish Balay      External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot
227702bc34aSSatish Balay      be used with PETSc if you have set PetscBLASInt to long int.
228702bc34aSSatish Balay 
229702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt
230702bc34aSSatish Balay 
231702bc34aSSatish Balay M*/
232702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES)
233702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt;
234702bc34aSSatish Balay #else
235702bc34aSSatish Balay typedef int PetscBLASInt;
236702bc34aSSatish Balay #endif
237702bc34aSSatish Balay 
23858b60935SBarry Smith /*EC
23958b60935SBarry Smith 
24058b60935SBarry Smith     PetscPrecision - indicates what precision the object is using
24158b60935SBarry Smith 
24258b60935SBarry Smith     Level: advanced
24358b60935SBarry Smith 
24458b60935SBarry Smith .seealso: PetscObjectSetPrecision()
24558b60935SBarry Smith E*/
24658b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision;
24758b60935SBarry Smith extern const char *PetscPrecisions[];
24858b60935SBarry Smith 
24958b60935SBarry Smith 
250503cfb0cSBarry Smith /*
251503cfb0cSBarry Smith     For the rare cases when one needs to send a size_t object with MPI
252503cfb0cSBarry Smith */
253d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT)
254d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT
255d382aafbSBarry Smith #elif  (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG)
256d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG
257d382aafbSBarry Smith #elif  (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG)
258d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT
259d382aafbSBarry Smith #else
260d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov"
261d382aafbSBarry Smith #endif
262d382aafbSBarry Smith 
263d382aafbSBarry Smith 
264d382aafbSBarry Smith /*
265d382aafbSBarry Smith       You can use PETSC_STDOUT as a replacement of stdout. You can also change
266d382aafbSBarry Smith     the value of PETSC_STDOUT to redirect all standard output elsewhere
267d382aafbSBarry Smith */
268d382aafbSBarry Smith 
269d382aafbSBarry Smith extern FILE* PETSC_STDOUT;
270d382aafbSBarry Smith 
271d382aafbSBarry Smith /*
272d382aafbSBarry Smith       You can use PETSC_STDERR as a replacement of stderr. You can also change
273d382aafbSBarry Smith     the value of PETSC_STDERR to redirect all standard error elsewhere
274d382aafbSBarry Smith */
275d382aafbSBarry Smith extern FILE* PETSC_STDERR;
276d382aafbSBarry Smith 
277d382aafbSBarry Smith /*
278d382aafbSBarry Smith       PETSC_ZOPEFD is used to send data to the PETSc webpage.  It can be used
279d382aafbSBarry Smith     in conjunction with PETSC_STDOUT, or by itself.
280d382aafbSBarry Smith */
281d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD;
282d382aafbSBarry Smith 
283d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus)
284d382aafbSBarry Smith /*MC
285d382aafbSBarry Smith       PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of
286d382aafbSBarry Smith             a PETSc function that remove certain optional arguments for a simplier user interface
287d382aafbSBarry Smith 
288d382aafbSBarry Smith    Synopsis:
289d382aafbSBarry Smith    PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function))
290d382aafbSBarry Smith 
291eca87e8dSBarry Smith      Not collective
292eca87e8dSBarry Smith 
293d382aafbSBarry Smith    Level: developer
294d382aafbSBarry Smith 
295d382aafbSBarry Smith     Example:
296d382aafbSBarry Smith       PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine
297d382aafbSBarry Smith            PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r)
298d382aafbSBarry Smith 
299d382aafbSBarry Smith .seealso: PetscPolymorphicFunction()
300d382aafbSBarry Smith 
301d382aafbSBarry Smith M*/
302d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;}
303d382aafbSBarry Smith 
304d382aafbSBarry Smith /*MC
305d382aafbSBarry Smith       PetscPolymorphicScalar - allows defining a C++ polymorphic version of
306d382aafbSBarry Smith             a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument
307d382aafbSBarry Smith 
308d382aafbSBarry Smith    Synopsis:
309d382aafbSBarry Smith    PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function))
310d382aafbSBarry Smith 
311eca87e8dSBarry Smith    Not collective
312eca87e8dSBarry Smith 
313d382aafbSBarry Smith    Level: developer
314d382aafbSBarry Smith 
315d382aafbSBarry Smith     Example:
316d382aafbSBarry Smith       PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine
317d382aafbSBarry Smith            PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);}
318d382aafbSBarry Smith 
319d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine()
320d382aafbSBarry Smith 
321d382aafbSBarry Smith M*/
322d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;}
323d382aafbSBarry Smith 
324d382aafbSBarry Smith /*MC
325d382aafbSBarry Smith       PetscPolymorphicFunction - allows defining a C++ polymorphic version of
326d382aafbSBarry Smith             a PETSc function that remove certain optional arguments for a simplier user interface
327d382aafbSBarry Smith             and returns the computed value (istead of an error code)
328d382aafbSBarry Smith 
329d382aafbSBarry Smith    Synopsis:
330d382aafbSBarry Smith    PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name)
331d382aafbSBarry Smith 
332eca87e8dSBarry Smith      Not collective
333eca87e8dSBarry Smith 
334d382aafbSBarry Smith    Level: developer
335d382aafbSBarry Smith 
336d382aafbSBarry Smith     Example:
337d382aafbSBarry Smith       PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine
338d382aafbSBarry Smith          PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;}
339d382aafbSBarry Smith 
340d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine()
341d382aafbSBarry Smith 
342d382aafbSBarry Smith M*/
343d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;}
344d382aafbSBarry Smith 
345d382aafbSBarry Smith #else
346d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C)
347d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C)
348d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E)
349d382aafbSBarry Smith #endif
350d382aafbSBarry Smith 
351d382aafbSBarry Smith /*MC
352d382aafbSBarry Smith     PetscUnlikely - hints the compiler that the given condition is usually FALSE
353d382aafbSBarry Smith 
354d382aafbSBarry Smith     Synopsis:
355ace3abfcSBarry Smith     PetscBool  PetscUnlikely(PetscBool  cond)
356d382aafbSBarry Smith 
357eca87e8dSBarry Smith     Not Collective
358eca87e8dSBarry Smith 
359d382aafbSBarry Smith     Input Parameters:
360d382aafbSBarry Smith .   cond - condition or expression
361d382aafbSBarry Smith 
362d382aafbSBarry Smith     Note: This returns the same truth value, it is only a hint to compilers that the resulting
363d382aafbSBarry Smith     branch is unlikely.
364d382aafbSBarry Smith 
365d382aafbSBarry Smith     Level: advanced
366d382aafbSBarry Smith 
367d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ
368d382aafbSBarry Smith M*/
369d382aafbSBarry Smith 
370d382aafbSBarry Smith /*MC
371d382aafbSBarry Smith     PetscLikely - hints the compiler that the given condition is usually TRUE
372d382aafbSBarry Smith 
373d382aafbSBarry Smith     Synopsis:
374ace3abfcSBarry Smith     PetscBool  PetscUnlikely(PetscBool  cond)
375d382aafbSBarry Smith 
376eca87e8dSBarry Smith     Not Collective
377eca87e8dSBarry Smith 
378d382aafbSBarry Smith     Input Parameters:
379d382aafbSBarry Smith .   cond - condition or expression
380d382aafbSBarry Smith 
381d382aafbSBarry Smith     Note: This returns the same truth value, it is only a hint to compilers that the resulting
382d382aafbSBarry Smith     branch is likely.
383d382aafbSBarry Smith 
384d382aafbSBarry Smith     Level: advanced
385d382aafbSBarry Smith 
386d382aafbSBarry Smith .seealso: PetscUnlikely()
387d382aafbSBarry Smith M*/
388d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT)
389d382aafbSBarry Smith #  define PetscUnlikely(cond)   __builtin_expect(!!(cond),0)
390d382aafbSBarry Smith #  define PetscLikely(cond)     __builtin_expect(!!(cond),1)
391d382aafbSBarry Smith #else
392cd3f4ce9SJed Brown #  define PetscUnlikely(cond)   (cond)
393cd3f4ce9SJed Brown #  define PetscLikely(cond)     (cond)
394d382aafbSBarry Smith #endif
395d382aafbSBarry Smith 
396d382aafbSBarry Smith /*
397d382aafbSBarry Smith     Defines some elementary mathematics functions and constants.
398d382aafbSBarry Smith */
399d382aafbSBarry Smith #include "petscmath.h"
400d382aafbSBarry Smith 
401d382aafbSBarry Smith /*
402d382aafbSBarry Smith     Declare extern C stuff after including external header files
403d382aafbSBarry Smith */
404d382aafbSBarry Smith 
405d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN
406d382aafbSBarry Smith 
407d382aafbSBarry Smith /*
408d382aafbSBarry Smith        Basic PETSc constants
409d382aafbSBarry Smith */
410d382aafbSBarry Smith 
411d382aafbSBarry Smith /*E
412ace3abfcSBarry Smith     PetscBool  - Logical variable. Actually an int in C and a logical in Fortran.
413d382aafbSBarry Smith 
414d382aafbSBarry Smith    Level: beginner
415d382aafbSBarry Smith 
416ace3abfcSBarry Smith    Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for
41734e82e7dSBarry Smith       boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms.
41834e82e7dSBarry Smith 
419d382aafbSBarry Smith E*/
420ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool;
421ace3abfcSBarry Smith extern const char *PetscBools[];
42270b3c8c7SBarry Smith 
42370b3c8c7SBarry Smith /*E
42470b3c8c7SBarry Smith     PetscCopyMode  - Determines how an array passed to certain functions is copied or retained
42570b3c8c7SBarry Smith 
42670b3c8c7SBarry Smith    Level: beginner
42770b3c8c7SBarry Smith 
42870b3c8c7SBarry Smith $   PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array
42970b3c8c7SBarry Smith $   PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or
43070b3c8c7SBarry Smith $                       delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran.
43170b3c8c7SBarry Smith $   PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use
43270b3c8c7SBarry Smith                         the array but the user must delete the array after the object is destroyed.
43370b3c8c7SBarry Smith 
43470b3c8c7SBarry Smith E*/
43570b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode;
43670b3c8c7SBarry Smith extern const char *PetscCopyModes[];
437d382aafbSBarry Smith 
438d382aafbSBarry Smith /*MC
439ace3abfcSBarry Smith     PETSC_FALSE - False value of PetscBool
440d382aafbSBarry Smith 
441d382aafbSBarry Smith     Level: beginner
442d382aafbSBarry Smith 
443d382aafbSBarry Smith     Note: Zero integer
444d382aafbSBarry Smith 
445ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE
446d382aafbSBarry Smith M*/
447d382aafbSBarry Smith 
448d382aafbSBarry Smith /*MC
449ace3abfcSBarry Smith     PETSC_TRUE - True value of PetscBool
450d382aafbSBarry Smith 
451d382aafbSBarry Smith     Level: beginner
452d382aafbSBarry Smith 
453d382aafbSBarry Smith     Note: Nonzero integer
454d382aafbSBarry Smith 
455ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE
456d382aafbSBarry Smith M*/
457d382aafbSBarry Smith 
458d382aafbSBarry Smith /*MC
459d382aafbSBarry Smith     PETSC_NULL - standard way of passing in a null or array or pointer
460d382aafbSBarry Smith 
461d382aafbSBarry Smith    Level: beginner
462d382aafbSBarry Smith 
463d382aafbSBarry Smith    Notes: accepted by many PETSc functions to not set a parameter and instead use
464d382aafbSBarry Smith           some default
465d382aafbSBarry Smith 
466d382aafbSBarry Smith           This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER,
467503cfb0cSBarry Smith           PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc
468d382aafbSBarry Smith 
46934e82e7dSBarry Smith   Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under
47034e82e7dSBarry Smith       different versions of Unix. It is tricky to insure the correct include file is always included.
47134e82e7dSBarry Smith 
472d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE
473d382aafbSBarry Smith 
474d382aafbSBarry Smith M*/
475d382aafbSBarry Smith #define PETSC_NULL           0
476d382aafbSBarry Smith 
477d382aafbSBarry Smith /*MC
478d382aafbSBarry Smith     PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument
479d382aafbSBarry Smith 
480d382aafbSBarry Smith    Level: beginner
481d382aafbSBarry Smith 
482d382aafbSBarry Smith    Note: accepted by many PETSc functions to not set a parameter and instead use
483d382aafbSBarry Smith           some default
484d382aafbSBarry Smith 
485d382aafbSBarry Smith    Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER,
486d382aafbSBarry Smith           PETSC_NULL_DOUBLE_PRECISION etc
487d382aafbSBarry Smith 
488d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE
489d382aafbSBarry Smith 
490d382aafbSBarry Smith M*/
491d382aafbSBarry Smith #define PETSC_IGNORE         PETSC_NULL
492d382aafbSBarry Smith 
493d382aafbSBarry Smith /*MC
494557d4da8SBarry Smith     PETSC_DECIDE - standard way of passing in integer or floating point parameter
495557d4da8SBarry Smith        where you wish PETSc to use the default.
496557d4da8SBarry Smith 
497557d4da8SBarry Smith    Level: beginner
498557d4da8SBarry Smith 
499557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE
500557d4da8SBarry Smith 
501557d4da8SBarry Smith M*/
502557d4da8SBarry Smith #define PETSC_DECIDE  -1
503557d4da8SBarry Smith 
504557d4da8SBarry Smith /*MC
505d382aafbSBarry Smith     PETSC_DETERMINE - standard way of passing in integer or floating point parameter
506d382aafbSBarry Smith        where you wish PETSc to compute the required value.
507d382aafbSBarry Smith 
508d382aafbSBarry Smith    Level: beginner
509d382aafbSBarry Smith 
510557d4da8SBarry Smith 
511557d4da8SBarry Smith    Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for
512557d4da8SBarry Smith      some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value.
513557d4da8SBarry Smith 
514d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes()
515d382aafbSBarry Smith 
516d382aafbSBarry Smith M*/
517d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE
518d382aafbSBarry Smith 
519d382aafbSBarry Smith /*MC
520557d4da8SBarry Smith     PETSC_DEFAULT - standard way of passing in integer or floating point parameter
521557d4da8SBarry Smith        where you wish PETSc to use the default.
522557d4da8SBarry Smith 
523557d4da8SBarry Smith    Level: beginner
524557d4da8SBarry Smith 
525557d4da8SBarry Smith    Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION.
526557d4da8SBarry Smith 
527557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE
528557d4da8SBarry Smith 
529557d4da8SBarry Smith M*/
530557d4da8SBarry Smith #define PETSC_DEFAULT  -2
531557d4da8SBarry Smith 
532557d4da8SBarry Smith /*MC
533d382aafbSBarry Smith     PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents
534d382aafbSBarry Smith            all the processs that PETSc knows about.
535d382aafbSBarry Smith 
536d382aafbSBarry Smith    Level: beginner
537d382aafbSBarry Smith 
538d382aafbSBarry Smith    Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to
539d382aafbSBarry Smith           run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller)
540d382aafbSBarry Smith           communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling
541d382aafbSBarry Smith           PetscInitialize()
542d382aafbSBarry Smith 
543d382aafbSBarry Smith .seealso: PETSC_COMM_SELF
544d382aafbSBarry Smith 
545d382aafbSBarry Smith M*/
546d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD;
547d382aafbSBarry Smith 
548d382aafbSBarry Smith /*MC
549503cfb0cSBarry Smith     PETSC_COMM_SELF - This is always MPI_COMM_SELF
550d382aafbSBarry Smith 
551d382aafbSBarry Smith    Level: beginner
552d382aafbSBarry Smith 
553d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD
554d382aafbSBarry Smith 
555d382aafbSBarry Smith M*/
556d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF
557d382aafbSBarry Smith 
5587087cfbeSBarry Smith extern  PetscBool  PetscInitializeCalled;
5597087cfbeSBarry Smith extern  PetscBool  PetscFinalizeCalled;
5608b5db460SBarry Smith extern PetscBool   PetscCUSPSynchronize;
561d382aafbSBarry Smith 
5627087cfbeSBarry Smith extern PetscErrorCode  PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm));
5637087cfbeSBarry Smith extern PetscErrorCode  PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*);
5647087cfbeSBarry Smith extern PetscErrorCode  PetscCommDestroy(MPI_Comm*);
565d382aafbSBarry Smith 
566d382aafbSBarry Smith /*MC
567d382aafbSBarry Smith    PetscMalloc - Allocates memory
568d382aafbSBarry Smith 
569eca87e8dSBarry Smith    Synopsis:
570eca87e8dSBarry Smith    PetscErrorCode PetscMalloc(size_t m,void **result)
571eca87e8dSBarry Smith 
572eca87e8dSBarry Smith    Not Collective
573eca87e8dSBarry Smith 
574d382aafbSBarry Smith    Input Parameter:
575d382aafbSBarry Smith .  m - number of bytes to allocate
576d382aafbSBarry Smith 
577d382aafbSBarry Smith    Output Parameter:
578d382aafbSBarry Smith .  result - memory allocated
579d382aafbSBarry Smith 
580d382aafbSBarry Smith    Level: beginner
581d382aafbSBarry Smith 
582d382aafbSBarry Smith    Notes: Memory is always allocated at least double aligned
583d382aafbSBarry Smith 
584d382aafbSBarry Smith           If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will
585d382aafbSBarry Smith           properly handle not freeing the null pointer.
586d382aafbSBarry Smith 
587d382aafbSBarry Smith .seealso: PetscFree(), PetscNew()
588d382aafbSBarry Smith 
589d382aafbSBarry Smith   Concepts: memory allocation
590d382aafbSBarry Smith 
591d382aafbSBarry Smith M*/
5922714b66aSJed Brown #define PetscMalloc(a,b)  ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) )
593d382aafbSBarry Smith 
594d382aafbSBarry Smith /*MC
595503cfb0cSBarry Smith    PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment
596d382aafbSBarry Smith 
597d382aafbSBarry Smith    Synopsis:
598d382aafbSBarry Smith    void *PetscAddrAlign(void *addr)
599d382aafbSBarry Smith 
600eca87e8dSBarry Smith    Not Collective
601eca87e8dSBarry Smith 
602eca87e8dSBarry Smith    Input Parameters:
603eca87e8dSBarry Smith .  addr - address to align (any pointer type)
604eca87e8dSBarry Smith 
605d382aafbSBarry Smith    Level: developer
606d382aafbSBarry Smith 
607d382aafbSBarry Smith .seealso: PetscMallocAlign()
608d382aafbSBarry Smith 
609d382aafbSBarry Smith   Concepts: memory allocation
610d382aafbSBarry Smith M*/
611d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1))
612d382aafbSBarry Smith 
613d382aafbSBarry Smith /*MC
614503cfb0cSBarry Smith    PetscMalloc2 - Allocates 2 chunks of  memory both aligned to PETSC_MEMALIGN
615d382aafbSBarry Smith 
616eca87e8dSBarry Smith    Synopsis:
617eca87e8dSBarry Smith    PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2)
618eca87e8dSBarry Smith 
619eca87e8dSBarry Smith    Not Collective
620eca87e8dSBarry Smith 
621d382aafbSBarry Smith    Input Parameter:
622d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
623d382aafbSBarry Smith .  t1 - type of first memory elements
624d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
625d382aafbSBarry Smith -  t2 - type of second memory elements
626d382aafbSBarry Smith 
627d382aafbSBarry Smith    Output Parameter:
628d382aafbSBarry Smith +  r1 - memory allocated in first chunk
629d382aafbSBarry Smith -  r2 - memory allocated in second chunk
630d382aafbSBarry Smith 
631d382aafbSBarry Smith    Level: developer
632d382aafbSBarry Smith 
633d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc()
634d382aafbSBarry Smith 
635d382aafbSBarry Smith   Concepts: memory allocation
636d382aafbSBarry Smith 
637d382aafbSBarry Smith M*/
638d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
639d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2))
640d382aafbSBarry Smith #else
6413b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \
642d382aafbSBarry Smith                                          || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0))
643d382aafbSBarry Smith #endif
644d382aafbSBarry Smith 
645d382aafbSBarry Smith /*MC
646503cfb0cSBarry Smith    PetscMalloc3 - Allocates 3 chunks of  memory  all aligned to PETSC_MEMALIGN
647d382aafbSBarry Smith 
648eca87e8dSBarry Smith    Synopsis:
649eca87e8dSBarry Smith    PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3)
650eca87e8dSBarry Smith 
651eca87e8dSBarry Smith    Not Collective
652eca87e8dSBarry Smith 
653d382aafbSBarry Smith    Input Parameter:
654d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
655d382aafbSBarry Smith .  t1 - type of first memory elements
656d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
657d382aafbSBarry Smith .  t2 - type of second memory elements
658d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
659d382aafbSBarry Smith -  t3 - type of third memory elements
660d382aafbSBarry Smith 
661d382aafbSBarry Smith    Output Parameter:
662d382aafbSBarry Smith +  r1 - memory allocated in first chunk
663d382aafbSBarry Smith .  r2 - memory allocated in second chunk
664d382aafbSBarry Smith -  r3 - memory allocated in third chunk
665d382aafbSBarry Smith 
666d382aafbSBarry Smith    Level: developer
667d382aafbSBarry Smith 
668d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3()
669d382aafbSBarry Smith 
670d382aafbSBarry Smith   Concepts: memory allocation
671d382aafbSBarry Smith 
672d382aafbSBarry Smith M*/
673d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
674d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3))
675d382aafbSBarry Smith #else
6763b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \
677d382aafbSBarry Smith                                                   || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0))
678d382aafbSBarry Smith #endif
679d382aafbSBarry Smith 
680d382aafbSBarry Smith /*MC
681503cfb0cSBarry Smith    PetscMalloc4 - Allocates 4 chunks of  memory  all aligned to PETSC_MEMALIGN
682d382aafbSBarry Smith 
683eca87e8dSBarry Smith    Synopsis:
684eca87e8dSBarry Smith    PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4)
685eca87e8dSBarry Smith 
686eca87e8dSBarry Smith    Not Collective
687eca87e8dSBarry Smith 
688d382aafbSBarry Smith    Input Parameter:
689d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
690d382aafbSBarry Smith .  t1 - type of first memory elements
691d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
692d382aafbSBarry Smith .  t2 - type of second memory elements
693d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
694d382aafbSBarry Smith .  t3 - type of third memory elements
695d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
696d382aafbSBarry Smith -  t4 - type of fourth memory elements
697d382aafbSBarry Smith 
698d382aafbSBarry Smith    Output Parameter:
699d382aafbSBarry Smith +  r1 - memory allocated in first chunk
700d382aafbSBarry Smith .  r2 - memory allocated in second chunk
701d382aafbSBarry Smith .  r3 - memory allocated in third chunk
702d382aafbSBarry Smith -  r4 - memory allocated in fourth chunk
703d382aafbSBarry Smith 
704d382aafbSBarry Smith    Level: developer
705d382aafbSBarry Smith 
706d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4()
707d382aafbSBarry Smith 
708d382aafbSBarry Smith   Concepts: memory allocation
709d382aafbSBarry Smith 
710d382aafbSBarry Smith M*/
711d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
712d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4))
713d382aafbSBarry Smith #else
714d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4)               \
7153b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \
716d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0))
717d382aafbSBarry Smith #endif
718d382aafbSBarry Smith 
719d382aafbSBarry Smith /*MC
720503cfb0cSBarry Smith    PetscMalloc5 - Allocates 5 chunks of  memory all aligned to PETSC_MEMALIGN
721d382aafbSBarry Smith 
722eca87e8dSBarry Smith    Synopsis:
723eca87e8dSBarry Smith    PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5)
724eca87e8dSBarry Smith 
725eca87e8dSBarry Smith    Not Collective
726eca87e8dSBarry Smith 
727d382aafbSBarry Smith    Input Parameter:
728d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
729d382aafbSBarry Smith .  t1 - type of first memory elements
730d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
731d382aafbSBarry Smith .  t2 - type of second memory elements
732d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
733d382aafbSBarry Smith .  t3 - type of third memory elements
734d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
735d382aafbSBarry Smith .  t4 - type of fourth memory elements
736d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
737d382aafbSBarry Smith -  t5 - type of fifth memory elements
738d382aafbSBarry Smith 
739d382aafbSBarry Smith    Output Parameter:
740d382aafbSBarry Smith +  r1 - memory allocated in first chunk
741d382aafbSBarry Smith .  r2 - memory allocated in second chunk
742d382aafbSBarry Smith .  r3 - memory allocated in third chunk
743d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
744d382aafbSBarry Smith -  r5 - memory allocated in fifth chunk
745d382aafbSBarry Smith 
746d382aafbSBarry Smith    Level: developer
747d382aafbSBarry Smith 
748d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5()
749d382aafbSBarry Smith 
750d382aafbSBarry Smith   Concepts: memory allocation
751d382aafbSBarry Smith 
752d382aafbSBarry Smith M*/
753d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
754d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5))
755d382aafbSBarry Smith #else
756d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5)      \
7573b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \
758d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0))
759d382aafbSBarry Smith #endif
760d382aafbSBarry Smith 
761d382aafbSBarry Smith 
762d382aafbSBarry Smith /*MC
763503cfb0cSBarry Smith    PetscMalloc6 - Allocates 6 chunks of  memory all aligned to PETSC_MEMALIGN
764d382aafbSBarry Smith 
765eca87e8dSBarry Smith    Synopsis:
766eca87e8dSBarry Smith    PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6)
767eca87e8dSBarry Smith 
768eca87e8dSBarry Smith    Not Collective
769eca87e8dSBarry Smith 
770d382aafbSBarry Smith    Input Parameter:
771d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
772d382aafbSBarry Smith .  t1 - type of first memory elements
773d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
774d382aafbSBarry Smith .  t2 - type of second memory elements
775d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
776d382aafbSBarry Smith .  t3 - type of third memory elements
777d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
778d382aafbSBarry Smith .  t4 - type of fourth memory elements
779d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
780d382aafbSBarry Smith .  t5 - type of fifth memory elements
781d382aafbSBarry Smith .  m6 - number of elements to allocate in 6th chunk  (may be zero)
782d382aafbSBarry Smith -  t6 - type of sixth memory elements
783d382aafbSBarry Smith 
784d382aafbSBarry Smith    Output Parameter:
785d382aafbSBarry Smith +  r1 - memory allocated in first chunk
786d382aafbSBarry Smith .  r2 - memory allocated in second chunk
787d382aafbSBarry Smith .  r3 - memory allocated in third chunk
788d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
789d382aafbSBarry Smith .  r5 - memory allocated in fifth chunk
790d382aafbSBarry Smith -  r6 - memory allocated in sixth chunk
791d382aafbSBarry Smith 
792d382aafbSBarry Smith    Level: developer
793d382aafbSBarry Smith 
794d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6()
795d382aafbSBarry Smith 
796d382aafbSBarry Smith   Concepts: memory allocation
797d382aafbSBarry Smith 
798d382aafbSBarry Smith M*/
799d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
800d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6))
801d382aafbSBarry Smith #else
802d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \
8033b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \
804d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0))
805d382aafbSBarry Smith #endif
806d382aafbSBarry Smith 
807d382aafbSBarry Smith /*MC
808503cfb0cSBarry Smith    PetscMalloc7 - Allocates 7 chunks of  memory all aligned to PETSC_MEMALIGN
809d382aafbSBarry Smith 
810eca87e8dSBarry Smith    Synopsis:
811eca87e8dSBarry Smith    PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7)
812eca87e8dSBarry Smith 
813eca87e8dSBarry Smith    Not Collective
814eca87e8dSBarry Smith 
815d382aafbSBarry Smith    Input Parameter:
816d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
817d382aafbSBarry Smith .  t1 - type of first memory elements
818d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
819d382aafbSBarry Smith .  t2 - type of second memory elements
820d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
821d382aafbSBarry Smith .  t3 - type of third memory elements
822d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
823d382aafbSBarry Smith .  t4 - type of fourth memory elements
824d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
825d382aafbSBarry Smith .  t5 - type of fifth memory elements
826d382aafbSBarry Smith .  m6 - number of elements to allocate in 6th chunk  (may be zero)
827d382aafbSBarry Smith .  t6 - type of sixth memory elements
828d382aafbSBarry Smith .  m7 - number of elements to allocate in 7th chunk  (may be zero)
829d382aafbSBarry Smith -  t7 - type of sixth memory elements
830d382aafbSBarry Smith 
831d382aafbSBarry Smith    Output Parameter:
832d382aafbSBarry Smith +  r1 - memory allocated in first chunk
833d382aafbSBarry Smith .  r2 - memory allocated in second chunk
834d382aafbSBarry Smith .  r3 - memory allocated in third chunk
835d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
836d382aafbSBarry Smith .  r5 - memory allocated in fifth chunk
837d382aafbSBarry Smith .  r6 - memory allocated in sixth chunk
838eca87e8dSBarry Smith -  r7 - memory allocated in seventh chunk
839d382aafbSBarry Smith 
840d382aafbSBarry Smith    Level: developer
841d382aafbSBarry Smith 
842d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7()
843d382aafbSBarry Smith 
844d382aafbSBarry Smith   Concepts: memory allocation
845d382aafbSBarry Smith 
846d382aafbSBarry Smith M*/
847d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
848d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7))
849d382aafbSBarry Smith #else
850d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \
8513b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \
852d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0))
853d382aafbSBarry Smith #endif
854d382aafbSBarry Smith 
855d382aafbSBarry Smith /*MC
856503cfb0cSBarry Smith    PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN
857d382aafbSBarry Smith 
858eca87e8dSBarry Smith    Synopsis:
859eca87e8dSBarry Smith    PetscErrorCode PetscNew(struct type,((type *))result)
860eca87e8dSBarry Smith 
861eca87e8dSBarry Smith    Not Collective
862eca87e8dSBarry Smith 
863d382aafbSBarry Smith    Input Parameter:
864d382aafbSBarry Smith .  type - structure name of space to be allocated. Memory of size sizeof(type) is allocated
865d382aafbSBarry Smith 
866d382aafbSBarry Smith    Output Parameter:
867d382aafbSBarry Smith .  result - memory allocated
868d382aafbSBarry Smith 
869d382aafbSBarry Smith    Level: beginner
870d382aafbSBarry Smith 
871ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog()
872d382aafbSBarry Smith 
873d382aafbSBarry Smith   Concepts: memory allocation
874d382aafbSBarry Smith 
875d382aafbSBarry Smith M*/
876d382aafbSBarry Smith #define PetscNew(A,b)      (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A)))
877ad0619ddSBarry Smith 
878ad0619ddSBarry Smith /*MC
879ad0619ddSBarry Smith    PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated
880ad0619ddSBarry Smith          with the given object using PetscLogObjectMemory().
881ad0619ddSBarry Smith 
882ad0619ddSBarry Smith    Synopsis:
883ad0619ddSBarry Smith    PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result)
884ad0619ddSBarry Smith 
885ad0619ddSBarry Smith    Not Collective
886ad0619ddSBarry Smith 
887ad0619ddSBarry Smith    Input Parameter:
888ad0619ddSBarry Smith +  obj - object memory is logged to
889ad0619ddSBarry Smith -  type - structure name of space to be allocated. Memory of size sizeof(type) is allocated
890ad0619ddSBarry Smith 
891ad0619ddSBarry Smith    Output Parameter:
892ad0619ddSBarry Smith .  result - memory allocated
893ad0619ddSBarry Smith 
894ad0619ddSBarry Smith    Level: developer
895ad0619ddSBarry Smith 
896ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory()
897ad0619ddSBarry Smith 
898ad0619ddSBarry Smith   Concepts: memory allocation
899ad0619ddSBarry Smith 
900ad0619ddSBarry Smith M*/
901d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0))
902d382aafbSBarry Smith 
903d382aafbSBarry Smith /*MC
904d382aafbSBarry Smith    PetscFree - Frees memory
905d382aafbSBarry Smith 
906eca87e8dSBarry Smith    Synopsis:
907eca87e8dSBarry Smith    PetscErrorCode PetscFree(void *memory)
908eca87e8dSBarry Smith 
909eca87e8dSBarry Smith    Not Collective
910eca87e8dSBarry Smith 
911d382aafbSBarry Smith    Input Parameter:
912d382aafbSBarry Smith .   memory - memory to free (the pointer is ALWAYS set to 0 upon sucess)
913d382aafbSBarry Smith 
914d382aafbSBarry Smith    Level: beginner
915d382aafbSBarry Smith 
916d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscNew() or PetscMalloc()
917d382aafbSBarry Smith 
918d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid()
919d382aafbSBarry Smith 
920d382aafbSBarry Smith   Concepts: memory allocation
921d382aafbSBarry Smith 
922d382aafbSBarry Smith M*/
92312537b14SJed Brown #define PetscFree(a)   ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0)))
924d382aafbSBarry Smith 
925d382aafbSBarry Smith /*MC
926d382aafbSBarry Smith    PetscFreeVoid - Frees memory
927d382aafbSBarry Smith 
928d382aafbSBarry Smith    Synopsis:
929d382aafbSBarry Smith    void PetscFreeVoid(void *memory)
930d382aafbSBarry Smith 
931eca87e8dSBarry Smith    Not Collective
932eca87e8dSBarry Smith 
933eca87e8dSBarry Smith    Input Parameter:
934eca87e8dSBarry Smith .   memory - memory to free
935eca87e8dSBarry Smith 
936d382aafbSBarry Smith    Level: beginner
937d382aafbSBarry Smith 
938d382aafbSBarry Smith    Notes: This is different from PetscFree() in that no error code is returned
939d382aafbSBarry Smith 
940d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc()
941d382aafbSBarry Smith 
942d382aafbSBarry Smith   Concepts: memory allocation
943d382aafbSBarry Smith 
944d382aafbSBarry Smith M*/
9452714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0)
946d382aafbSBarry Smith 
947d382aafbSBarry Smith 
948d382aafbSBarry Smith /*MC
949d382aafbSBarry Smith    PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2()
950d382aafbSBarry Smith 
951eca87e8dSBarry Smith    Synopsis:
952eca87e8dSBarry Smith    PetscErrorCode PetscFree2(void *memory1,void *memory2)
953eca87e8dSBarry Smith 
954eca87e8dSBarry Smith    Not Collective
955eca87e8dSBarry Smith 
956d382aafbSBarry Smith    Input Parameter:
957d382aafbSBarry Smith +   memory1 - memory to free
958d382aafbSBarry Smith -   memory2 - 2nd memory to free
959d382aafbSBarry Smith 
960d382aafbSBarry Smith    Level: developer
961d382aafbSBarry Smith 
962d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc2()
963d382aafbSBarry Smith 
964d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree()
965d382aafbSBarry Smith 
966d382aafbSBarry Smith   Concepts: memory allocation
967d382aafbSBarry Smith 
968d382aafbSBarry Smith M*/
969d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
970d382aafbSBarry Smith #define PetscFree2(m1,m2)   (PetscFree(m2) || PetscFree(m1))
971d382aafbSBarry Smith #else
97281dabb53SJed Brown #define PetscFree2(m1,m2)   ((m2)=0, PetscFree(m1))
973d382aafbSBarry Smith #endif
974d382aafbSBarry Smith 
975d382aafbSBarry Smith /*MC
976d382aafbSBarry Smith    PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3()
977d382aafbSBarry Smith 
978eca87e8dSBarry Smith    Synopsis:
979eca87e8dSBarry Smith    PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3)
980eca87e8dSBarry Smith 
981eca87e8dSBarry Smith    Not Collective
982eca87e8dSBarry Smith 
983d382aafbSBarry Smith    Input Parameter:
984d382aafbSBarry Smith +   memory1 - memory to free
985d382aafbSBarry Smith .   memory2 - 2nd memory to free
986d382aafbSBarry Smith -   memory3 - 3rd memory to free
987d382aafbSBarry Smith 
988d382aafbSBarry Smith    Level: developer
989d382aafbSBarry Smith 
990d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc3()
991d382aafbSBarry Smith 
992d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3()
993d382aafbSBarry Smith 
994d382aafbSBarry Smith   Concepts: memory allocation
995d382aafbSBarry Smith 
996d382aafbSBarry Smith M*/
997d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
998d382aafbSBarry Smith #define PetscFree3(m1,m2,m3)   (PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
999d382aafbSBarry Smith #else
100081dabb53SJed Brown #define PetscFree3(m1,m2,m3)   ((m3)=0,(m2)=0,PetscFree(m1))
1001d382aafbSBarry Smith #endif
1002d382aafbSBarry Smith 
1003d382aafbSBarry Smith /*MC
1004d382aafbSBarry Smith    PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4()
1005d382aafbSBarry Smith 
1006eca87e8dSBarry Smith    Synopsis:
1007eca87e8dSBarry Smith    PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4)
1008eca87e8dSBarry Smith 
1009eca87e8dSBarry Smith    Not Collective
1010eca87e8dSBarry Smith 
1011d382aafbSBarry Smith    Input Parameter:
1012d382aafbSBarry Smith +   m1 - memory to free
1013d382aafbSBarry Smith .   m2 - 2nd memory to free
1014d382aafbSBarry Smith .   m3 - 3rd memory to free
1015d382aafbSBarry Smith -   m4 - 4th memory to free
1016d382aafbSBarry Smith 
1017d382aafbSBarry Smith    Level: developer
1018d382aafbSBarry Smith 
1019d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc4()
1020d382aafbSBarry Smith 
1021d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4()
1022d382aafbSBarry Smith 
1023d382aafbSBarry Smith   Concepts: memory allocation
1024d382aafbSBarry Smith 
1025d382aafbSBarry Smith M*/
1026d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1027d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4)   (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1028d382aafbSBarry Smith #else
102981dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4)   ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1030d382aafbSBarry Smith #endif
1031d382aafbSBarry Smith 
1032d382aafbSBarry Smith /*MC
1033d382aafbSBarry Smith    PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5()
1034d382aafbSBarry Smith 
1035eca87e8dSBarry Smith    Synopsis:
1036eca87e8dSBarry Smith    PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5)
1037eca87e8dSBarry Smith 
1038eca87e8dSBarry Smith    Not Collective
1039eca87e8dSBarry Smith 
1040d382aafbSBarry Smith    Input Parameter:
1041d382aafbSBarry Smith +   m1 - memory to free
1042d382aafbSBarry Smith .   m2 - 2nd memory to free
1043d382aafbSBarry Smith .   m3 - 3rd memory to free
1044d382aafbSBarry Smith .   m4 - 4th memory to free
1045d382aafbSBarry Smith -   m5 - 5th memory to free
1046d382aafbSBarry Smith 
1047d382aafbSBarry Smith    Level: developer
1048d382aafbSBarry Smith 
1049d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc5()
1050d382aafbSBarry Smith 
1051d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5()
1052d382aafbSBarry Smith 
1053d382aafbSBarry Smith   Concepts: memory allocation
1054d382aafbSBarry Smith 
1055d382aafbSBarry Smith M*/
1056d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1057d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5)   (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1058d382aafbSBarry Smith #else
105981dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5)   ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1060d382aafbSBarry Smith #endif
1061d382aafbSBarry Smith 
1062d382aafbSBarry Smith 
1063d382aafbSBarry Smith /*MC
1064d382aafbSBarry Smith    PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6()
1065d382aafbSBarry Smith 
1066eca87e8dSBarry Smith    Synopsis:
1067eca87e8dSBarry Smith    PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6)
1068eca87e8dSBarry Smith 
1069eca87e8dSBarry Smith    Not Collective
1070eca87e8dSBarry Smith 
1071d382aafbSBarry Smith    Input Parameter:
1072d382aafbSBarry Smith +   m1 - memory to free
1073d382aafbSBarry Smith .   m2 - 2nd memory to free
1074d382aafbSBarry Smith .   m3 - 3rd memory to free
1075d382aafbSBarry Smith .   m4 - 4th memory to free
1076d382aafbSBarry Smith .   m5 - 5th memory to free
1077d382aafbSBarry Smith -   m6 - 6th memory to free
1078d382aafbSBarry Smith 
1079d382aafbSBarry Smith 
1080d382aafbSBarry Smith    Level: developer
1081d382aafbSBarry Smith 
1082d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc6()
1083d382aafbSBarry Smith 
1084d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6()
1085d382aafbSBarry Smith 
1086d382aafbSBarry Smith   Concepts: memory allocation
1087d382aafbSBarry Smith 
1088d382aafbSBarry Smith M*/
1089d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1090d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6)   (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1091d382aafbSBarry Smith #else
109281dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6)   ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1093d382aafbSBarry Smith #endif
1094d382aafbSBarry Smith 
1095d382aafbSBarry Smith /*MC
1096d382aafbSBarry Smith    PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7()
1097d382aafbSBarry Smith 
1098eca87e8dSBarry Smith    Synopsis:
1099eca87e8dSBarry Smith    PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7)
1100eca87e8dSBarry Smith 
1101eca87e8dSBarry Smith    Not Collective
1102eca87e8dSBarry Smith 
1103d382aafbSBarry Smith    Input Parameter:
1104d382aafbSBarry Smith +   m1 - memory to free
1105d382aafbSBarry Smith .   m2 - 2nd memory to free
1106d382aafbSBarry Smith .   m3 - 3rd memory to free
1107d382aafbSBarry Smith .   m4 - 4th memory to free
1108d382aafbSBarry Smith .   m5 - 5th memory to free
1109d382aafbSBarry Smith .   m6 - 6th memory to free
1110d382aafbSBarry Smith -   m7 - 7th memory to free
1111d382aafbSBarry Smith 
1112d382aafbSBarry Smith 
1113d382aafbSBarry Smith    Level: developer
1114d382aafbSBarry Smith 
1115d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc7()
1116d382aafbSBarry Smith 
1117d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(),
1118d382aafbSBarry Smith           PetscMalloc7()
1119d382aafbSBarry Smith 
1120d382aafbSBarry Smith   Concepts: memory allocation
1121d382aafbSBarry Smith 
1122d382aafbSBarry Smith M*/
1123d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1124d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7)   (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1125d382aafbSBarry Smith #else
112681dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7)   ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1127d382aafbSBarry Smith #endif
1128d382aafbSBarry Smith 
11297087cfbeSBarry Smith extern  PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**);
11307087cfbeSBarry Smith extern  PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]);
11317087cfbeSBarry Smith extern PetscErrorCode   PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[]));
11327087cfbeSBarry Smith extern PetscErrorCode   PetscMallocClear(void);
1133d382aafbSBarry Smith 
1134d382aafbSBarry Smith /*
113566d669d6SBarry Smith    Routines for tracing memory corruption/bleeding with default PETSc  memory allocation
1136d382aafbSBarry Smith */
11377087cfbeSBarry Smith extern PetscErrorCode    PetscMallocDump(FILE *);
11387087cfbeSBarry Smith extern PetscErrorCode    PetscMallocDumpLog(FILE *);
11397087cfbeSBarry Smith extern PetscErrorCode    PetscMallocGetCurrentUsage(PetscLogDouble *);
11407087cfbeSBarry Smith extern PetscErrorCode    PetscMallocGetMaximumUsage(PetscLogDouble *);
11417087cfbeSBarry Smith extern PetscErrorCode    PetscMallocDebug(PetscBool);
11427087cfbeSBarry Smith extern PetscErrorCode    PetscMallocValidate(int,const char[],const char[],const char[]);
11437087cfbeSBarry Smith extern PetscErrorCode    PetscMallocSetDumpLog(void);
114418a2528dSJed Brown extern PetscErrorCode PetscMallocGetDumpLog(PetscBool*);
1145d382aafbSBarry Smith 
1146d382aafbSBarry Smith 
1147d382aafbSBarry Smith /*E
1148d382aafbSBarry Smith     PetscDataType - Used for handling different basic data types.
1149d382aafbSBarry Smith 
1150d382aafbSBarry Smith    Level: beginner
1151d382aafbSBarry Smith 
1152d382aafbSBarry Smith    Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not?
1153d382aafbSBarry Smith 
1154d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(),
1155d382aafbSBarry Smith           PetscDataTypeGetSize()
1156d382aafbSBarry Smith 
1157d382aafbSBarry Smith E*/
1158d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5,
115959a34000SBarry Smith               PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType;
1160d382aafbSBarry Smith extern const char *PetscDataTypes[];
1161d382aafbSBarry Smith 
1162d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX)
1163d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_COMPLEX
1164d382aafbSBarry Smith #else
1165ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE)
1166d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_FLOAT
116759a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128)
116859a34000SBarry Smith #define  PETSC_SCALAR  PETSC___FLOAT128
1169d382aafbSBarry Smith #else
1170d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_DOUBLE
1171d382aafbSBarry Smith #endif
1172d382aafbSBarry Smith #endif
1173ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE)
1174d382aafbSBarry Smith #define  PETSC_REAL  PETSC_FLOAT
117559a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128)
117659a34000SBarry Smith #define  PETSC_REAL  PETSC___FLOAT128
1177d382aafbSBarry Smith #else
1178d382aafbSBarry Smith #define  PETSC_REAL  PETSC_DOUBLE
1179d382aafbSBarry Smith #endif
1180d382aafbSBarry Smith #define  PETSC_FORTRANADDR  PETSC_LONG
1181d382aafbSBarry Smith 
11827087cfbeSBarry Smith extern PetscErrorCode  PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*);
11837087cfbeSBarry Smith extern PetscErrorCode  PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*);
11847087cfbeSBarry Smith extern PetscErrorCode  PetscDataTypeGetSize(PetscDataType,size_t*);
1185d382aafbSBarry Smith 
1186d382aafbSBarry Smith /*
1187d382aafbSBarry Smith     Basic memory and string operations. These are usually simple wrappers
1188d382aafbSBarry Smith    around the basic Unix system calls, but a few of them have additional
1189d382aafbSBarry Smith    functionality and/or error checking.
1190d382aafbSBarry Smith */
11917087cfbeSBarry Smith extern PetscErrorCode    PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType);
11927087cfbeSBarry Smith extern PetscErrorCode    PetscMemmove(void*,void *,size_t);
11937087cfbeSBarry Smith extern PetscErrorCode    PetscMemcmp(const void*,const void*,size_t,PetscBool  *);
11947087cfbeSBarry Smith extern PetscErrorCode    PetscStrlen(const char[],size_t*);
11957087cfbeSBarry Smith extern PetscErrorCode    PetscStrToArray(const char[],int*,char ***);
11967087cfbeSBarry Smith extern PetscErrorCode    PetscStrToArrayDestroy(int,char **);
11977087cfbeSBarry Smith extern PetscErrorCode    PetscStrcmp(const char[],const char[],PetscBool  *);
11987087cfbeSBarry Smith extern PetscErrorCode    PetscStrgrt(const char[],const char[],PetscBool  *);
11997087cfbeSBarry Smith extern PetscErrorCode    PetscStrcasecmp(const char[],const char[],PetscBool *);
12007087cfbeSBarry Smith extern PetscErrorCode    PetscStrncmp(const char[],const char[],size_t,PetscBool *);
12017087cfbeSBarry Smith extern PetscErrorCode    PetscStrcpy(char[],const char[]);
12027087cfbeSBarry Smith extern PetscErrorCode    PetscStrcat(char[],const char[]);
12037087cfbeSBarry Smith extern PetscErrorCode    PetscStrncat(char[],const char[],size_t);
12047087cfbeSBarry Smith extern PetscErrorCode    PetscStrncpy(char[],const char[],size_t);
12057087cfbeSBarry Smith extern PetscErrorCode    PetscStrchr(const char[],char,char *[]);
12067087cfbeSBarry Smith extern PetscErrorCode    PetscStrtolower(char[]);
12077087cfbeSBarry Smith extern PetscErrorCode    PetscStrrchr(const char[],char,char *[]);
12087087cfbeSBarry Smith extern PetscErrorCode    PetscStrstr(const char[],const char[],char *[]);
12097087cfbeSBarry Smith extern PetscErrorCode    PetscStrrstr(const char[],const char[],char *[]);
121074722a09SBarry Smith extern PetscErrorCode    PetscStrendswith(const char[],const char[],PetscBool*);
12117ba3a57cSBarry Smith extern PetscErrorCode    PetscStrendswithwhich(const char[],const char *const*,PetscInt*);
12127087cfbeSBarry Smith extern PetscErrorCode    PetscStrallocpy(const char[],char *[]);
12137087cfbeSBarry Smith extern PetscErrorCode    PetscStrreplace(MPI_Comm,const char[],char[],size_t);
1214d382aafbSBarry Smith 
1215d382aafbSBarry Smith /*S
1216d382aafbSBarry Smith     PetscToken - 'Token' used for managing tokenizing strings
1217d382aafbSBarry Smith 
1218d382aafbSBarry Smith   Level: intermediate
1219d382aafbSBarry Smith 
1220d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy()
1221d382aafbSBarry Smith S*/
1222d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken;
1223d382aafbSBarry Smith 
12247087cfbeSBarry Smith extern PetscErrorCode    PetscTokenCreate(const char[],const char,PetscToken*);
12257087cfbeSBarry Smith extern PetscErrorCode    PetscTokenFind(PetscToken,char *[]);
12268c74ee41SBarry Smith extern PetscErrorCode    PetscTokenDestroy(PetscToken*);
1227d382aafbSBarry Smith 
1228d382aafbSBarry Smith /*
1229d382aafbSBarry Smith    These are  MPI operations for MPI_Allreduce() etc
1230d382aafbSBarry Smith */
12317087cfbeSBarry Smith extern  MPI_Op PetscMaxSum_Op;
1232ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128)
1233*b0c94c62SJed Brown extern  MPI_Op MPIU_SUM;
1234d9822059SBarry Smith extern  MPI_Op MPIU_MAX;
1235d9822059SBarry Smith extern  MPI_Op MPIU_MIN;
1236d9822059SBarry Smith #else
1237*b0c94c62SJed Brown #define MPIU_SUM MPI_SUM
1238d9822059SBarry Smith #define MPIU_MAX MPI_MAX
1239d9822059SBarry Smith #define MPIU_MIN MPI_MIN
1240d9822059SBarry Smith #endif
12417087cfbeSBarry Smith extern PetscErrorCode  PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*);
1242d382aafbSBarry Smith 
1243a25532f0SBarry Smith extern PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm);
1244a25532f0SBarry Smith extern PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm);
1245eb3f98d2SBarry Smith 
1246d382aafbSBarry Smith /*S
1247d382aafbSBarry Smith      PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc
1248d382aafbSBarry Smith 
1249d382aafbSBarry Smith    Level: beginner
1250d382aafbSBarry Smith 
1251d382aafbSBarry Smith    Note: This is the base class from which all objects appear.
1252d382aafbSBarry Smith 
12531890ba74SBarry Smith .seealso:  PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc()
1254d382aafbSBarry Smith S*/
1255d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject;
1256d382aafbSBarry Smith 
1257d382aafbSBarry Smith /*S
1258d382aafbSBarry Smith      PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed
1259d382aafbSBarry Smith       by string name
1260d382aafbSBarry Smith 
1261d382aafbSBarry Smith    Level: advanced
1262d382aafbSBarry Smith 
1263d382aafbSBarry Smith .seealso:  PetscFListAdd(), PetscFListDestroy()
1264d382aafbSBarry Smith S*/
1265d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList;
1266d382aafbSBarry Smith 
1267e4d1774bSDmitry Karpeev /*S
1268e4d1774bSDmitry Karpeev      PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries,
1269e4d1774bSDmitry Karpeev                     accessed by string op name together with string argument types.
1270e4d1774bSDmitry Karpeev 
1271e4d1774bSDmitry Karpeev    Level: advanced
1272e4d1774bSDmitry Karpeev 
1273e4d1774bSDmitry Karpeev .seealso:  PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy()
1274e4d1774bSDmitry Karpeev S*/
1275e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList;
1276e4d1774bSDmitry Karpeev 
1277d382aafbSBarry Smith /*E
1278d382aafbSBarry Smith   PetscFileMode - Access mode for a file.
1279d382aafbSBarry Smith 
1280d382aafbSBarry Smith   Level: beginner
1281d382aafbSBarry Smith 
1282d382aafbSBarry Smith   FILE_MODE_READ - open a file at its beginning for reading
1283d382aafbSBarry Smith 
1284d382aafbSBarry Smith   FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist)
1285d382aafbSBarry Smith 
1286d382aafbSBarry Smith   FILE_MODE_APPEND - open a file at end for writing
1287d382aafbSBarry Smith 
1288d382aafbSBarry Smith   FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing
1289d382aafbSBarry Smith 
1290d382aafbSBarry Smith   FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end
1291d382aafbSBarry Smith 
1292d382aafbSBarry Smith .seealso: PetscViewerFileSetMode()
1293d382aafbSBarry Smith E*/
1294d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode;
1295d382aafbSBarry Smith 
1296d382aafbSBarry Smith #include "petscviewer.h"
1297d382aafbSBarry Smith #include "petscoptions.h"
1298d382aafbSBarry Smith 
12990700a824SBarry Smith #define PETSC_SMALLEST_CLASSID  1211211
13007087cfbeSBarry Smith extern PetscClassId   PETSC_LARGEST_CLASSID;
13017087cfbeSBarry Smith extern PetscClassId   PETSC_OBJECT_CLASSID;
13027087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *);
1303d382aafbSBarry Smith 
1304d382aafbSBarry Smith /*
1305d382aafbSBarry Smith    Routines that get memory usage information from the OS
1306d382aafbSBarry Smith */
13077087cfbeSBarry Smith extern PetscErrorCode  PetscMemoryGetCurrentUsage(PetscLogDouble *);
13087087cfbeSBarry Smith extern PetscErrorCode  PetscMemoryGetMaximumUsage(PetscLogDouble *);
13097087cfbeSBarry Smith extern PetscErrorCode  PetscMemorySetGetMaximumUsage(void);
13107087cfbeSBarry Smith extern PetscErrorCode  PetscMemoryShowUsage(PetscViewer,const char[]);
1311d382aafbSBarry Smith 
13127087cfbeSBarry Smith extern PetscErrorCode  PetscInfoAllow(PetscBool ,const char []);
13137087cfbeSBarry Smith extern PetscErrorCode  PetscGetTime(PetscLogDouble*);
13147087cfbeSBarry Smith extern PetscErrorCode  PetscGetCPUTime(PetscLogDouble*);
13157087cfbeSBarry Smith extern PetscErrorCode  PetscSleep(PetscReal);
1316d382aafbSBarry Smith 
1317d382aafbSBarry Smith /*
1318d382aafbSBarry Smith    Initialization of PETSc
1319d382aafbSBarry Smith */
13207087cfbeSBarry Smith extern PetscErrorCode  PetscInitialize(int*,char***,const char[],const char[]);
1321d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL))
13227087cfbeSBarry Smith extern PetscErrorCode  PetscInitializeNoArguments(void);
13237087cfbeSBarry Smith extern PetscErrorCode  PetscInitialized(PetscBool  *);
13247087cfbeSBarry Smith extern PetscErrorCode  PetscFinalized(PetscBool  *);
13257087cfbeSBarry Smith extern PetscErrorCode  PetscFinalize(void);
132609573ac7SBarry Smith extern PetscErrorCode  PetscInitializeFortran(void);
13277087cfbeSBarry Smith extern PetscErrorCode  PetscGetArgs(int*,char ***);
13287087cfbeSBarry Smith extern PetscErrorCode  PetscGetArguments(char ***);
13297087cfbeSBarry Smith extern PetscErrorCode  PetscFreeArguments(char **);
1330d382aafbSBarry Smith 
13317087cfbeSBarry Smith extern PetscErrorCode  PetscEnd(void);
13327087cfbeSBarry Smith extern PetscErrorCode  PetscSysInitializePackage(const char[]);
1333d382aafbSBarry Smith 
1334d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD;
133585afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*);
133685afcc9aSBarry Smith extern PetscErrorCode  PetscHMPISpawn(PetscMPIInt);
133785afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIFinalize(void);
133885afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*);
133985afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*);
134085afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIFree(MPI_Comm,void*);
134185afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIMalloc(MPI_Comm,size_t,void**);
1342d382aafbSBarry Smith 
13437087cfbeSBarry Smith extern PetscErrorCode  PetscPythonInitialize(const char[],const char[]);
13447087cfbeSBarry Smith extern PetscErrorCode  PetscPythonFinalize(void);
13457087cfbeSBarry Smith extern PetscErrorCode  PetscPythonPrintError(void);
13465180491cSLisandro Dalcin extern PetscErrorCode  PetscPythonMonitorSet(PetscObject,const char[]);
1347d382aafbSBarry Smith 
1348d382aafbSBarry Smith /*
1349d382aafbSBarry Smith      These are so that in extern C code we can caste function pointers to non-extern C
1350d382aafbSBarry Smith    function pointers. Since the regular C++ code expects its function pointers to be
1351d382aafbSBarry Smith    C++.
1352d382aafbSBarry Smith */
1353d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void);
1354d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void);
1355d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void);
1356d382aafbSBarry Smith 
1357d382aafbSBarry Smith /*
1358d382aafbSBarry Smith    PetscTryMethod - Queries an object for a method, if it exists then calls it.
1359d382aafbSBarry Smith               These are intended to be used only inside PETSc functions.
1360503cfb0cSBarry Smith 
1361503cfb0cSBarry Smith    Level: developer
1362503cfb0cSBarry Smith 
1363503cfb0cSBarry Smith .seealso: PetscUseMethod()
1364d382aafbSBarry Smith */
1365d382aafbSBarry Smith #define  PetscTryMethod(obj,A,B,C) \
1366d382aafbSBarry Smith   0;{ PetscErrorCode (*f)B, __ierr; \
1367d382aafbSBarry Smith     __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \
1368d382aafbSBarry Smith     if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\
1369d382aafbSBarry Smith   }
1370503cfb0cSBarry Smith 
1371503cfb0cSBarry Smith /*
1372503cfb0cSBarry Smith    PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error.
1373503cfb0cSBarry Smith               These are intended to be used only inside PETSc functions.
1374503cfb0cSBarry Smith 
1375503cfb0cSBarry Smith    Level: developer
1376503cfb0cSBarry Smith 
1377503cfb0cSBarry Smith .seealso: PetscTryMethod()
1378503cfb0cSBarry Smith */
1379d382aafbSBarry Smith #define  PetscUseMethod(obj,A,B,C) \
1380d382aafbSBarry Smith   0;{ PetscErrorCode (*f)B, __ierr; \
1381d382aafbSBarry Smith     __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \
1382d382aafbSBarry Smith     if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\
1383703c66c1SJed Brown     else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \
1384d382aafbSBarry Smith   }
1385503cfb0cSBarry Smith 
1386d382aafbSBarry Smith /*
1387d382aafbSBarry Smith     Functions that can act on any PETSc object.
1388d382aafbSBarry Smith */
1389fcfd50ebSBarry Smith extern PetscErrorCode  PetscObjectDestroy(PetscObject*);
13907087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetComm(PetscObject,MPI_Comm *);
13917087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetClassId(PetscObject,PetscClassId *);
1392609db0e0SLisandro Dalcin extern PetscErrorCode  PetscObjectGetClassName(PetscObject,const char *[]);
13937087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetType(PetscObject,const char []);
13947087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetPrecision(PetscObject,PetscPrecision);
13957087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetType(PetscObject,const char *[]);
13967087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetName(PetscObject,const char[]);
13977087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetName(PetscObject,const char*[]);
13987087cfbeSBarry Smith extern PetscErrorCode  PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]);
13997087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetTabLevel(PetscObject,PetscInt);
14007087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetTabLevel(PetscObject,PetscInt*);
14017087cfbeSBarry Smith extern PetscErrorCode  PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt);
14027087cfbeSBarry Smith extern PetscErrorCode  PetscObjectReference(PetscObject);
14037087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetReference(PetscObject,PetscInt*);
14047087cfbeSBarry Smith extern PetscErrorCode  PetscObjectDereference(PetscObject);
14057087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetNewTag(PetscObject,PetscMPIInt *);
14067087cfbeSBarry Smith extern PetscErrorCode  PetscObjectView(PetscObject,PetscViewer);
14077087cfbeSBarry Smith extern PetscErrorCode  PetscObjectCompose(PetscObject,const char[],PetscObject);
14086ba4bc90SBarry Smith extern PetscErrorCode  PetscObjectRemoveReference(PetscObject,const char[]);
14097087cfbeSBarry Smith extern PetscErrorCode  PetscObjectQuery(PetscObject,const char[],PetscObject *);
14107087cfbeSBarry Smith extern PetscErrorCode  PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void));
14117087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetFromOptions(PetscObject);
14127087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetUp(PetscObject);
14137087cfbeSBarry Smith extern PetscErrorCode  PetscCommGetNewTag(MPI_Comm,PetscMPIInt *);
14147087cfbeSBarry Smith extern PetscErrorCode  PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*);
14157087cfbeSBarry Smith extern PetscErrorCode  PetscObjectProcessOptionsHandlers(PetscObject);
14167087cfbeSBarry Smith extern PetscErrorCode  PetscObjectDestroyOptionsHandlers(PetscObject);
1417d382aafbSBarry Smith 
1418d382aafbSBarry Smith /*MC
1419d382aafbSBarry Smith    PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object.
1420d382aafbSBarry Smith 
1421eca87e8dSBarry Smith     Synopsis:
1422eca87e8dSBarry Smith     PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr)
1423eca87e8dSBarry Smith 
1424ad4df100SBarry Smith    Logically Collective on PetscObject
1425d382aafbSBarry Smith 
1426d382aafbSBarry Smith    Input Parameters:
1427d382aafbSBarry Smith +  obj - the PETSc object; this must be cast with a (PetscObject), for example,
1428d382aafbSBarry Smith          PetscObjectCompose((PetscObject)mat,...);
1429d382aafbSBarry Smith .  name - name associated with the child function
1430d382aafbSBarry Smith .  fname - name of the function
1431d382aafbSBarry Smith -  ptr - function pointer (or PETSC_NULL if using dynamic libraries)
1432d382aafbSBarry Smith 
1433d382aafbSBarry Smith    Level: advanced
1434d382aafbSBarry Smith 
1435d382aafbSBarry Smith 
1436d382aafbSBarry Smith    Notes:
1437d382aafbSBarry Smith    To remove a registered routine, pass in a PETSC_NULL rname and fnc().
1438d382aafbSBarry Smith 
1439d382aafbSBarry Smith    PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as
1440d382aafbSBarry Smith    Mat, Vec, KSP, SNES, etc.) or any user-provided object.
1441d382aafbSBarry Smith 
1442d382aafbSBarry Smith    The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to
144320de1f94SBarry Smith    work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading)
1444d382aafbSBarry Smith    enabled.
1445d382aafbSBarry Smith 
1446d382aafbSBarry Smith    Concepts: objects^composing functions
1447d382aafbSBarry Smith    Concepts: composing functions
1448d382aafbSBarry Smith    Concepts: functions^querying
1449d382aafbSBarry Smith    Concepts: objects^querying
1450d382aafbSBarry Smith    Concepts: querying objects
1451d382aafbSBarry Smith 
1452d382aafbSBarry Smith .seealso: PetscObjectQueryFunction()
1453d382aafbSBarry Smith M*/
1454d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
1455d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0)
1456d382aafbSBarry Smith #else
1457d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d))
1458d382aafbSBarry Smith #endif
1459d382aafbSBarry Smith 
14607087cfbeSBarry Smith extern PetscErrorCode  PetscObjectQueryFunction(PetscObject,const char[],void (**)(void));
14617087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetOptionsPrefix(PetscObject,const char[]);
14627087cfbeSBarry Smith extern PetscErrorCode  PetscObjectAppendOptionsPrefix(PetscObject,const char[]);
14637087cfbeSBarry Smith extern PetscErrorCode  PetscObjectPrependOptionsPrefix(PetscObject,const char[]);
14647087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetOptionsPrefix(PetscObject,const char*[]);
14657087cfbeSBarry Smith extern PetscErrorCode  PetscObjectAMSPublish(PetscObject);
14667087cfbeSBarry Smith extern PetscErrorCode  PetscObjectUnPublish(PetscObject);
14677087cfbeSBarry Smith extern PetscErrorCode  PetscObjectChangeTypeName(PetscObject,const char[]);
14687087cfbeSBarry Smith extern PetscErrorCode  PetscObjectRegisterDestroy(PetscObject);
14697087cfbeSBarry Smith extern PetscErrorCode  PetscObjectRegisterDestroyAll(void);
14707087cfbeSBarry Smith extern PetscErrorCode  PetscObjectName(PetscObject);
14717087cfbeSBarry Smith extern PetscErrorCode  PetscTypeCompare(PetscObject,const char[],PetscBool *);
14722b12f010SJed Brown extern PetscErrorCode  PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...);
14737087cfbeSBarry Smith extern PetscErrorCode  PetscRegisterFinalize(PetscErrorCode (*)(void));
14747087cfbeSBarry Smith extern PetscErrorCode  PetscRegisterFinalizeAll(void);
1475d382aafbSBarry Smith 
1476d382aafbSBarry Smith /*
1477d382aafbSBarry Smith     Defines PETSc error handling.
1478d382aafbSBarry Smith */
1479d382aafbSBarry Smith #include "petscerror.h"
1480d382aafbSBarry Smith 
1481d382aafbSBarry Smith /*S
1482503cfb0cSBarry Smith      PetscOList - Linked list of PETSc objects, each accessable by string name
1483d382aafbSBarry Smith 
14841d0fab5eSBarry Smith    Level: developer
1485d382aafbSBarry Smith 
14861d0fab5eSBarry Smith    Notes: Used by PetscObjectCompose() and PetscObjectQuery()
14871d0fab5eSBarry Smith 
14881d0fab5eSBarry Smith .seealso:  PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery()
1489d382aafbSBarry Smith S*/
1490d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList;
1491d382aafbSBarry Smith 
1492fcfd50ebSBarry Smith extern PetscErrorCode  PetscOListDestroy(PetscOList*);
14937087cfbeSBarry Smith extern PetscErrorCode  PetscOListFind(PetscOList,const char[],PetscObject*);
1494bfec8eecSBarry Smith extern PetscErrorCode  PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*);
14957087cfbeSBarry Smith extern PetscErrorCode  PetscOListAdd(PetscOList *,const char[],PetscObject);
14966ba4bc90SBarry Smith extern PetscErrorCode  PetscOListRemoveReference(PetscOList *,const char[]);
14977087cfbeSBarry Smith extern PetscErrorCode  PetscOListDuplicate(PetscOList,PetscOList *);
1498d382aafbSBarry Smith 
1499d382aafbSBarry Smith /*
1500503cfb0cSBarry Smith     Dynamic library lists. Lists of names of routines in objects or in dynamic
1501d382aafbSBarry Smith   link libraries that will be loaded as needed.
1502d382aafbSBarry Smith */
15037087cfbeSBarry Smith extern PetscErrorCode  PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void));
15047087cfbeSBarry Smith extern PetscErrorCode  PetscFListDestroy(PetscFList*);
15054b91b6eaSBarry Smith extern PetscErrorCode  PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void));
15067087cfbeSBarry Smith extern PetscErrorCode  PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]);
1507d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
1508d382aafbSBarry Smith #define    PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0)
1509d382aafbSBarry Smith #else
1510d382aafbSBarry Smith #define    PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c)
1511d382aafbSBarry Smith #endif
15127087cfbeSBarry Smith extern PetscErrorCode  PetscFListDuplicate(PetscFList,PetscFList *);
15137087cfbeSBarry Smith extern PetscErrorCode  PetscFListView(PetscFList,PetscViewer);
15147087cfbeSBarry Smith extern PetscErrorCode  PetscFListConcat(const char [],const char [],char []);
15157087cfbeSBarry Smith extern PetscErrorCode  PetscFListGet(PetscFList,char ***,int*);
1516d382aafbSBarry Smith 
151748703020SDmitry Karpeev /*
151848703020SDmitry Karpeev     Multiple dispatch operation function lists. Lists of names of routines with corresponding
151948703020SDmitry Karpeev     argument type names with function pointers or in dynamic link libraries that will be loaded
152048703020SDmitry Karpeev     as needed.  Search on the op name and argument type names.
152148703020SDmitry Karpeev */
15222356f84bSDmitry Karpeev extern PetscErrorCode  PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]);
152348703020SDmitry Karpeev extern PetscErrorCode  PetscOpFListDestroy(PetscOpFList*);
15242356f84bSDmitry Karpeev extern PetscErrorCode  PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]);
152548703020SDmitry Karpeev extern PetscErrorCode  PetscOpFListView(PetscOpFList,PetscViewer);
1526d382aafbSBarry Smith /*S
1527d382aafbSBarry Smith      PetscDLLibrary - Linked list of dynamics libraries to search for functions
1528d382aafbSBarry Smith 
1529d382aafbSBarry Smith    Level: advanced
1530d382aafbSBarry Smith 
153120de1f94SBarry Smith    --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries
1532d382aafbSBarry Smith 
1533d382aafbSBarry Smith .seealso:  PetscDLLibraryOpen()
1534d382aafbSBarry Smith S*/
1535d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary;
1536d44a1e48SBarry Smith extern PetscDLLibrary  PetscDLLibrariesLoaded;
15377087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]);
15387087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]);
15397087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **);
15407087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryPrintPath(PetscDLLibrary);
15417087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool  *);
15427087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *);
15437087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryClose(PetscDLLibrary);
1544d382aafbSBarry Smith 
1545d382aafbSBarry Smith /*
1546a5a3d712SDmitry Karpeev   PetscShell support.  Needs to be better documented.
154705846914SDmitry Karpeev   Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc.
154805846914SDmitry Karpeev */
1549a5a3d712SDmitry Karpeev #include "petscshell.h"
155005846914SDmitry Karpeev 
155105846914SDmitry Karpeev /*
1552d382aafbSBarry Smith      Useful utility routines
1553d382aafbSBarry Smith */
15547087cfbeSBarry Smith extern PetscErrorCode  PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*);
15557087cfbeSBarry Smith extern PetscErrorCode  PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*);
15567087cfbeSBarry Smith extern PetscErrorCode  PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt);
1557d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1))
1558d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1))
15597087cfbeSBarry Smith extern PetscErrorCode  PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt);
1560d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1))
1561d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1))
15627087cfbeSBarry Smith extern PetscErrorCode  PetscBarrier(PetscObject);
15637087cfbeSBarry Smith extern PetscErrorCode  PetscMPIDump(FILE*);
1564d382aafbSBarry Smith 
1565503cfb0cSBarry Smith /*
1566ace3abfcSBarry Smith     PetscNot - negates a logical type value and returns result as a PetscBool
1567503cfb0cSBarry Smith 
1568503cfb0cSBarry Smith     Notes: This is useful in cases like
1569503cfb0cSBarry Smith $     int        *a;
1570ace3abfcSBarry Smith $     PetscBool  flag = PetscNot(a)
1571ace3abfcSBarry Smith      where !a does not return a PetscBool  because we cannot provide a cast from int to PetscBool  in C.
1572503cfb0cSBarry Smith */
1573d382aafbSBarry Smith  #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE)
1574503cfb0cSBarry Smith 
1575d382aafbSBarry Smith /*
1576d382aafbSBarry Smith     Defines basic graphics available from PETSc.
1577d382aafbSBarry Smith */
1578d382aafbSBarry Smith #include "petscdraw.h"
1579d382aafbSBarry Smith 
1580d382aafbSBarry Smith /*
1581d382aafbSBarry Smith     Defines the base data structures for all PETSc objects
1582d382aafbSBarry Smith */
1583b45d2f2cSJed Brown #include "petsc-private/petscimpl.h"
1584503cfb0cSBarry Smith 
1585238ccf28SShri Abhyankar 
1586d382aafbSBarry Smith /*MC
1587d382aafbSBarry Smith     PetscErrorPrintf - Prints error messages.
1588d382aafbSBarry Smith 
1589d382aafbSBarry Smith    Synopsis:
1590d382aafbSBarry Smith      PetscErrorCode (*PetscErrorPrintf)(const char format[],...);
1591d382aafbSBarry Smith 
1592eca87e8dSBarry Smith     Not Collective
1593eca87e8dSBarry Smith 
1594d382aafbSBarry Smith     Input Parameters:
1595d382aafbSBarry Smith .   format - the usual printf() format string
1596d382aafbSBarry Smith 
1597d382aafbSBarry Smith    Options Database Keys:
1598d382aafbSBarry Smith +    -error_output_stdout - cause error messages to be printed to stdout instead of the
1599d382aafbSBarry Smith          (default) stderr
1600d382aafbSBarry Smith -    -error_output_none to turn off all printing of error messages (does not change the way the
1601d382aafbSBarry Smith           error is handled.)
1602d382aafbSBarry Smith 
1603d382aafbSBarry Smith    Notes: Use
1604d382aafbSBarry Smith $     PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the
1605d382aafbSBarry Smith $                        error is handled.) and
1606d382aafbSBarry Smith $     PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on
1607c9a19010SBarry Smith $        of you can use your own function
1608d382aafbSBarry Smith 
1609d382aafbSBarry Smith           Use
1610d382aafbSBarry Smith      PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file.
1611d382aafbSBarry Smith      PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file.
1612d382aafbSBarry Smith 
1613d382aafbSBarry Smith           Use
1614d382aafbSBarry Smith       PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print
1615d382aafbSBarry Smith 
1616d382aafbSBarry Smith    Level: developer
1617d382aafbSBarry Smith 
1618d382aafbSBarry Smith     Fortran Note:
1619d382aafbSBarry Smith     This routine is not supported in Fortran.
1620d382aafbSBarry Smith 
1621d382aafbSBarry Smith     Concepts: error messages^printing
1622d382aafbSBarry Smith     Concepts: printing^error messages
1623d382aafbSBarry Smith 
1624c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf()
1625d382aafbSBarry Smith M*/
16267087cfbeSBarry Smith extern  PetscErrorCode (*PetscErrorPrintf)(const char[],...);
1627d382aafbSBarry Smith 
1628d382aafbSBarry Smith /*MC
1629d382aafbSBarry Smith     PetscHelpPrintf - Prints help messages.
1630d382aafbSBarry Smith 
1631d382aafbSBarry Smith    Synopsis:
1632d382aafbSBarry Smith      PetscErrorCode (*PetscHelpPrintf)(const char format[],...);
1633d382aafbSBarry Smith 
1634eca87e8dSBarry Smith     Not Collective
1635eca87e8dSBarry Smith 
1636d382aafbSBarry Smith     Input Parameters:
1637d382aafbSBarry Smith .   format - the usual printf() format string
1638d382aafbSBarry Smith 
1639d382aafbSBarry Smith    Level: developer
1640d382aafbSBarry Smith 
1641d382aafbSBarry Smith     Fortran Note:
1642d382aafbSBarry Smith     This routine is not supported in Fortran.
1643d382aafbSBarry Smith 
1644d382aafbSBarry Smith     Concepts: help messages^printing
1645d382aafbSBarry Smith     Concepts: printing^help messages
1646d382aafbSBarry Smith 
1647d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf()
1648d382aafbSBarry Smith M*/
16497087cfbeSBarry Smith extern  PetscErrorCode  (*PetscHelpPrintf)(MPI_Comm,const char[],...);
1650d382aafbSBarry Smith 
1651fcfd50ebSBarry Smith /*
1652fcfd50ebSBarry Smith      Defines PETSc profiling.
1653fcfd50ebSBarry Smith */
1654fcfd50ebSBarry Smith #include "petsclog.h"
1655fcfd50ebSBarry Smith 
1656fcfd50ebSBarry Smith /*
1657fcfd50ebSBarry Smith           For locking, unlocking and destroying AMS memories associated with  PETSc objects. ams.h is included in petscviewer.h
1658fcfd50ebSBarry Smith */
1659fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS)
1660fcfd50ebSBarry Smith extern PetscBool  PetscAMSPublishAll;
1661fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj)  ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem))
1662fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem))
1663fcfd50ebSBarry Smith #define PetscObjectDepublish(obj)   ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1;
1664fcfd50ebSBarry Smith #else
1665fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj)   0
1666fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj)  0
1667fcfd50ebSBarry Smith #define PetscObjectDepublish(obj)      0
1668fcfd50ebSBarry Smith #endif
1669fcfd50ebSBarry Smith 
1670fcfd50ebSBarry Smith /*
1671fcfd50ebSBarry Smith       Simple PETSc parallel IO for ASCII printing
1672fcfd50ebSBarry Smith */
1673fcfd50ebSBarry Smith extern PetscErrorCode   PetscFixFilename(const char[],char[]);
1674fcfd50ebSBarry Smith extern PetscErrorCode   PetscFOpen(MPI_Comm,const char[],const char[],FILE**);
1675fcfd50ebSBarry Smith extern PetscErrorCode   PetscFClose(MPI_Comm,FILE*);
1676fcfd50ebSBarry Smith extern PetscErrorCode   PetscFPrintf(MPI_Comm,FILE*,const char[],...);
1677fcfd50ebSBarry Smith extern PetscErrorCode   PetscPrintf(MPI_Comm,const char[],...);
1678fcfd50ebSBarry Smith extern PetscErrorCode   PetscSNPrintf(char*,size_t,const char [],...);
1679257d2499SJed Brown extern PetscErrorCode   PetscSNPrintfCount(char*,size_t,const char [],size_t*,...);
1680fcfd50ebSBarry Smith 
1681fcfd50ebSBarry Smith 
1682fcfd50ebSBarry Smith 
1683fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/
1684fcfd50ebSBarry Smith #include <stdarg.h>
1685fcfd50ebSBarry Smith extern PetscErrorCode   PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list);
1686fcfd50ebSBarry Smith extern PetscErrorCode   (*PetscVFPrintf)(FILE*,const char[],va_list);
1687fcfd50ebSBarry Smith extern PetscErrorCode   PetscVFPrintfDefault(FILE*,const char[],va_list);
1688fcfd50ebSBarry Smith 
1689fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE)
1690fcfd50ebSBarry Smith extern PetscErrorCode  PetscVFPrintf_Matlab(FILE*,const char[],va_list);
1691fcfd50ebSBarry Smith #endif
1692fcfd50ebSBarry Smith 
169309573ac7SBarry Smith extern PetscErrorCode  PetscErrorPrintfDefault(const char [],...);
169409573ac7SBarry Smith extern PetscErrorCode  PetscErrorPrintfNone(const char [],...);
169509573ac7SBarry Smith extern PetscErrorCode  PetscHelpPrintfDefault(MPI_Comm,const char [],...);
1696d382aafbSBarry Smith 
1697d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN)
16987087cfbeSBarry Smith extern PetscErrorCode   PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **);
16997087cfbeSBarry Smith extern PetscErrorCode   PetscPClose(MPI_Comm,FILE*);
1700d382aafbSBarry Smith #endif
1701d382aafbSBarry Smith 
17027087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedPrintf(MPI_Comm,const char[],...);
17037087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...);
17047087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedFlush(MPI_Comm);
17057087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]);
17067087cfbeSBarry Smith extern PetscErrorCode   PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**);
17077087cfbeSBarry Smith extern PetscErrorCode   PetscStartJava(MPI_Comm,const char[],const char[],FILE**);
17087087cfbeSBarry Smith extern PetscErrorCode   PetscGetPetscDir(const char*[]);
1709d382aafbSBarry Smith 
17107087cfbeSBarry Smith extern PetscErrorCode   PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*);
1711d382aafbSBarry Smith 
1712d382aafbSBarry Smith /*S
1713d382aafbSBarry Smith      PetscContainer - Simple PETSc object that contains a pointer to any required data
1714d382aafbSBarry Smith 
1715d382aafbSBarry Smith    Level: advanced
1716d382aafbSBarry Smith 
1717d382aafbSBarry Smith .seealso:  PetscObject, PetscContainerCreate()
1718d382aafbSBarry Smith S*/
17197087cfbeSBarry Smith extern PetscClassId  PETSC_CONTAINER_CLASSID;
1720d382aafbSBarry Smith typedef struct _p_PetscContainer*  PetscContainer;
17217087cfbeSBarry Smith extern PetscErrorCode  PetscContainerGetPointer(PetscContainer,void **);
17227087cfbeSBarry Smith extern PetscErrorCode  PetscContainerSetPointer(PetscContainer,void *);
1723fcfd50ebSBarry Smith extern PetscErrorCode  PetscContainerDestroy(PetscContainer*);
17247087cfbeSBarry Smith extern PetscErrorCode  PetscContainerCreate(MPI_Comm,PetscContainer *);
17257087cfbeSBarry Smith extern PetscErrorCode  PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*));
1726d382aafbSBarry Smith 
1727d382aafbSBarry Smith /*
1728d382aafbSBarry Smith    For use in debuggers
1729d382aafbSBarry Smith */
17307087cfbeSBarry Smith extern  PetscMPIInt PetscGlobalRank;
17317087cfbeSBarry Smith extern  PetscMPIInt PetscGlobalSize;
17327087cfbeSBarry Smith extern PetscErrorCode  PetscIntView(PetscInt,const PetscInt[],PetscViewer);
17337087cfbeSBarry Smith extern PetscErrorCode  PetscRealView(PetscInt,const PetscReal[],PetscViewer);
17347087cfbeSBarry Smith extern PetscErrorCode  PetscScalarView(PetscInt,const PetscScalar[],PetscViewer);
1735d382aafbSBarry Smith 
1736d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H)
1737d382aafbSBarry Smith #include <memory.h>
1738d382aafbSBarry Smith #endif
1739d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H)
1740d382aafbSBarry Smith #include <stdlib.h>
1741d382aafbSBarry Smith #endif
1742d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H)
1743d382aafbSBarry Smith #include <strings.h>
1744d382aafbSBarry Smith #endif
1745d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H)
1746d382aafbSBarry Smith #include <string.h>
1747d382aafbSBarry Smith #endif
17486c7e564aSBarry Smith 
17496c7e564aSBarry Smith 
17504a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__)
1751d382aafbSBarry Smith #include <xmmintrin.h>
1752d382aafbSBarry Smith #endif
1753d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H)
1754d382aafbSBarry Smith #include <stdint.h>
1755d382aafbSBarry Smith #endif
1756d382aafbSBarry Smith 
1757fcfd50ebSBarry Smith #undef __FUNCT__
1758fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy"
1759d382aafbSBarry Smith /*@C
1760d382aafbSBarry Smith    PetscMemcpy - Copies n bytes, beginning at location b, to the space
1761d382aafbSBarry Smith    beginning at location a. The two memory regions CANNOT overlap, use
1762d382aafbSBarry Smith    PetscMemmove() in that case.
1763d382aafbSBarry Smith 
1764d382aafbSBarry Smith    Not Collective
1765d382aafbSBarry Smith 
1766d382aafbSBarry Smith    Input Parameters:
1767d382aafbSBarry Smith +  b - pointer to initial memory space
1768d382aafbSBarry Smith -  n - length (in bytes) of space to copy
1769d382aafbSBarry Smith 
1770d382aafbSBarry Smith    Output Parameter:
1771d382aafbSBarry Smith .  a - pointer to copy space
1772d382aafbSBarry Smith 
1773d382aafbSBarry Smith    Level: intermediate
1774d382aafbSBarry Smith 
1775d382aafbSBarry Smith    Compile Option:
1776d382aafbSBarry Smith     PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used
1777d382aafbSBarry Smith                                   for memory copies on double precision values.
1778d382aafbSBarry Smith     PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used
1779d382aafbSBarry Smith                                   for memory copies on double precision values.
1780d382aafbSBarry Smith     PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used
1781d382aafbSBarry Smith                                   for memory copies on double precision values.
1782d382aafbSBarry Smith 
1783d382aafbSBarry Smith    Note:
1784d382aafbSBarry Smith    This routine is analogous to memcpy().
1785d382aafbSBarry Smith 
1786503cfb0cSBarry Smith    Developer Note: this is inlined for fastest performance
1787503cfb0cSBarry Smith 
1788d382aafbSBarry Smith   Concepts: memory^copying
1789d382aafbSBarry Smith   Concepts: copying^memory
1790d382aafbSBarry Smith 
1791d382aafbSBarry Smith .seealso: PetscMemmove()
1792d382aafbSBarry Smith 
1793d382aafbSBarry Smith @*/
17947087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode  PetscMemcpy(void *a,const void *b,size_t n)
1795d382aafbSBarry Smith {
1796d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1797d382aafbSBarry Smith   unsigned long al = (unsigned long) a,bl = (unsigned long) b;
1798d382aafbSBarry Smith   unsigned long nl = (unsigned long) n;
1799a7e36092SMatthew G Knepley   PetscFunctionBegin;
1800e32f2f54SBarry Smith   if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer");
1801e32f2f54SBarry Smith   if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer");
1802a7e36092SMatthew G Knepley #else
1803d382aafbSBarry Smith   PetscFunctionBegin;
1804a7e36092SMatthew G Knepley #endif
1805d382aafbSBarry Smith   if (a != b) {
1806d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1807e47d2de2SBarry Smith     if ((al > bl && (al - bl) < nl) || (bl - al) < nl)  SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\
1808d382aafbSBarry Smith               or make sure your copy regions and lengths are correct. \n\
1809d382aafbSBarry Smith               Length (bytes) %ld first address %ld second address %ld",nl,al,bl);
1810d382aafbSBarry Smith #endif
1811d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY))
1812d382aafbSBarry Smith    if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1813d382aafbSBarry Smith       size_t len = n/sizeof(PetscScalar);
1814d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY)
1815d382aafbSBarry Smith       PetscBLASInt one = 1,blen = PetscBLASIntCast(len);
1816d382aafbSBarry Smith       BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one);
1817d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY)
1818d382aafbSBarry Smith       fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a);
1819d382aafbSBarry Smith #else
1820d382aafbSBarry Smith       size_t      i;
1821d382aafbSBarry Smith       PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a;
1822d382aafbSBarry Smith       for (i=0; i<len; i++) y[i] = x[i];
1823d382aafbSBarry Smith #endif
1824d382aafbSBarry Smith     } else {
1825d382aafbSBarry Smith       memcpy((char*)(a),(char*)(b),n);
1826d382aafbSBarry Smith     }
1827d382aafbSBarry Smith #else
1828d382aafbSBarry Smith     memcpy((char*)(a),(char*)(b),n);
1829d382aafbSBarry Smith #endif
1830d382aafbSBarry Smith   }
1831d382aafbSBarry Smith   PetscFunctionReturn(0);
1832d382aafbSBarry Smith }
1833d382aafbSBarry Smith 
1834d382aafbSBarry Smith /*@C
1835d382aafbSBarry Smith    PetscMemzero - Zeros the specified memory.
1836d382aafbSBarry Smith 
1837d382aafbSBarry Smith    Not Collective
1838d382aafbSBarry Smith 
1839d382aafbSBarry Smith    Input Parameters:
1840d382aafbSBarry Smith +  a - pointer to beginning memory location
1841d382aafbSBarry Smith -  n - length (in bytes) of memory to initialize
1842d382aafbSBarry Smith 
1843d382aafbSBarry Smith    Level: intermediate
1844d382aafbSBarry Smith 
1845d382aafbSBarry Smith    Compile Option:
1846d382aafbSBarry Smith    PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens
1847d382aafbSBarry Smith   to be faster than the memset() routine. This flag causes the bzero() routine to be used.
1848d382aafbSBarry Smith 
1849503cfb0cSBarry Smith    Developer Note: this is inlined for fastest performance
1850503cfb0cSBarry Smith 
1851d382aafbSBarry Smith    Concepts: memory^zeroing
1852d382aafbSBarry Smith    Concepts: zeroing^memory
1853d382aafbSBarry Smith 
1854d382aafbSBarry Smith .seealso: PetscMemcpy()
1855d382aafbSBarry Smith @*/
18567087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode  PetscMemzero(void *a,size_t n)
1857d382aafbSBarry Smith {
1858d382aafbSBarry Smith   if (n > 0) {
1859d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1860e32f2f54SBarry Smith     if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer");
1861d382aafbSBarry Smith #endif
1862d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO)
1863d382aafbSBarry Smith     if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1864d382aafbSBarry Smith       size_t      i,len = n/sizeof(PetscScalar);
1865d382aafbSBarry Smith       PetscScalar *x = (PetscScalar*)a;
1866d382aafbSBarry Smith       for (i=0; i<len; i++) x[i] = 0.0;
1867d382aafbSBarry Smith     } else {
1868d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO)
1869d382aafbSBarry Smith     if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1870d382aafbSBarry Smith       PetscInt len = n/sizeof(PetscScalar);
1871d382aafbSBarry Smith       fortranzero_(&len,(PetscScalar*)a);
1872d382aafbSBarry Smith     } else {
1873d382aafbSBarry Smith #endif
1874d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO)
1875d382aafbSBarry Smith       bzero((char *)a,n);
1876d382aafbSBarry Smith #else
1877d382aafbSBarry Smith       memset((char*)a,0,n);
1878d382aafbSBarry Smith #endif
1879d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO)
1880d382aafbSBarry Smith     }
1881d382aafbSBarry Smith #endif
1882d382aafbSBarry Smith   }
1883d382aafbSBarry Smith   return 0;
1884d382aafbSBarry Smith }
1885d382aafbSBarry Smith 
1886d382aafbSBarry Smith /*MC
1887d382aafbSBarry Smith    PetscPrefetchBlock - Prefetches a block of memory
1888d382aafbSBarry Smith 
1889eca87e8dSBarry Smith    Synopsis:
1890eca87e8dSBarry Smith     void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t)
1891eca87e8dSBarry Smith 
1892d382aafbSBarry Smith    Not Collective
1893d382aafbSBarry Smith 
1894d382aafbSBarry Smith    Input Parameters:
1895d382aafbSBarry Smith +  a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar)
1896d382aafbSBarry Smith .  n - number of elements to fetch
1897d382aafbSBarry Smith .  rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors)
189850d8bf02SJed Brown -  t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note
1899d382aafbSBarry Smith 
1900d382aafbSBarry Smith    Level: developer
1901d382aafbSBarry Smith 
1902d382aafbSBarry Smith    Notes:
1903d382aafbSBarry Smith    The last two arguments (rw and t) must be compile-time constants.
1904d382aafbSBarry Smith 
190550d8bf02SJed Brown    Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality.  Not all architectures offer
190650d8bf02SJed Brown    equivalent locality hints, but the following macros are always defined to their closest analogue.
190750d8bf02SJed Brown +  PETSC_PREFETCH_HINT_NTA - Non-temporal.  Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched).
190863cf1ef0SJed Brown .  PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level.  Use this when the memory will be reused regularly despite necessary eviction from L1.
190963cf1ef0SJed Brown .  PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1).
191063cf1ef0SJed Brown -  PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only.  (On many systems, T0 and T1 are equivalent.)
1911d382aafbSBarry Smith 
1912d382aafbSBarry Smith    This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid
1913d382aafbSBarry Smith    address).
1914d382aafbSBarry Smith 
1915d382aafbSBarry Smith    Concepts: memory
1916d382aafbSBarry Smith M*/
1917d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do {                               \
1918d382aafbSBarry Smith     const char *_p = (const char*)(a),*_end = (const char*)((a)+(n));   \
1919d382aafbSBarry Smith     for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \
1920d382aafbSBarry Smith   } while (0)
1921d382aafbSBarry Smith 
1922d382aafbSBarry Smith /*
1923e3c5b3baSBarry Smith     Allows accessing MATLAB Engine
1924d382aafbSBarry Smith */
1925d382aafbSBarry Smith #include "petscmatlab.h"
1926d382aafbSBarry Smith 
1927d382aafbSBarry Smith /*
1928d382aafbSBarry Smith       Determine if some of the kernel computation routines use
1929d382aafbSBarry Smith    Fortran (rather than C) for the numerical calculations. On some machines
1930d382aafbSBarry Smith    and compilers (like complex numbers) the Fortran version of the routines
1931d382aafbSBarry Smith    is faster than the C/C++ versions. The flag --with-fortran-kernels
1932e2e64c6bSBarry Smith    should be used with ./configure to turn these on.
1933d382aafbSBarry Smith */
1934d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS)
1935d382aafbSBarry Smith 
1936d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL)
1937d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL
1938d382aafbSBarry Smith #endif
1939d382aafbSBarry Smith 
19405a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM)
19415a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM
1942d382aafbSBarry Smith #endif
1943d382aafbSBarry Smith 
1944d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ)
1945d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ
1946d382aafbSBarry Smith #endif
1947d382aafbSBarry Smith 
1948d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ)
1949d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ
1950d382aafbSBarry Smith #endif
1951d382aafbSBarry Smith 
1952d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM)
1953d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM
1954d382aafbSBarry Smith #endif
1955d382aafbSBarry Smith 
1956d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY)
1957d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY
1958d382aafbSBarry Smith #endif
1959d382aafbSBarry Smith 
1960d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ)
1961d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ
1962d382aafbSBarry Smith #endif
1963d382aafbSBarry Smith 
1964d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ)
1965d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ
1966d382aafbSBarry Smith #endif
1967d382aafbSBarry Smith 
1968d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ)
1969d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ
1970d382aafbSBarry Smith #endif
1971d382aafbSBarry Smith 
1972d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ)
1973d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ
1974d382aafbSBarry Smith #endif
1975d382aafbSBarry Smith 
1976d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT)
1977d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT
1978d382aafbSBarry Smith #endif
1979d382aafbSBarry Smith 
1980d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY)
1981d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY
1982d382aafbSBarry Smith #endif
1983d382aafbSBarry Smith 
1984d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX)
1985d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX
1986d382aafbSBarry Smith #endif
1987d382aafbSBarry Smith 
1988d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY)
1989d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY
1990d382aafbSBarry Smith #endif
1991d382aafbSBarry Smith 
1992d382aafbSBarry Smith #endif
1993d382aafbSBarry Smith 
1994d382aafbSBarry Smith /*
1995d382aafbSBarry Smith     Macros for indicating code that should be compiled with a C interface,
1996d382aafbSBarry Smith    rather than a C++ interface. Any routines that are dynamically loaded
1997d382aafbSBarry Smith    (such as the PCCreate_XXX() routines) must be wrapped so that the name
1998d382aafbSBarry Smith    mangler does not change the functions symbol name. This just hides the
1999d382aafbSBarry Smith    ugly extern "C" {} wrappers.
2000d382aafbSBarry Smith */
2001d382aafbSBarry Smith #if defined(__cplusplus)
2002da861ed6SJed Brown #define PETSC_EXTERN_C extern "C"
2003d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" {
2004d382aafbSBarry Smith #define EXTERN_C_END }
2005d382aafbSBarry Smith #else
2006da861ed6SJed Brown #define PETSC_EXTERN_C
2007d382aafbSBarry Smith #define EXTERN_C_BEGIN
2008d382aafbSBarry Smith #define EXTERN_C_END
2009d382aafbSBarry Smith #endif
2010d382aafbSBarry Smith 
2011d382aafbSBarry Smith /* --------------------------------------------------------------------*/
2012d382aafbSBarry Smith 
2013d382aafbSBarry Smith /*MC
2014d382aafbSBarry Smith     MPI_Comm - the basic object used by MPI to determine which processes are involved in a
2015d382aafbSBarry Smith         communication
2016d382aafbSBarry Smith 
2017d382aafbSBarry Smith    Level: beginner
2018d382aafbSBarry Smith 
2019d382aafbSBarry Smith    Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm
2020d382aafbSBarry Smith 
2021d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF
2022d382aafbSBarry Smith M*/
2023d382aafbSBarry Smith 
2024d382aafbSBarry Smith /*MC
2025d382aafbSBarry Smith     PetscScalar - PETSc type that represents either a double precision real number, a double precision
2026d382aafbSBarry Smith        complex number, a single precision real number, a long double or an int - if the code is configured
2027d382aafbSBarry Smith        with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle
2028d382aafbSBarry Smith 
2029d382aafbSBarry Smith 
2030d382aafbSBarry Smith    Level: beginner
2031d382aafbSBarry Smith 
2032d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt
2033d382aafbSBarry Smith M*/
2034d382aafbSBarry Smith 
2035d382aafbSBarry Smith /*MC
2036d382aafbSBarry Smith     PetscReal - PETSc type that represents a real number version of PetscScalar
2037d382aafbSBarry Smith 
2038d382aafbSBarry Smith    Level: beginner
2039d382aafbSBarry Smith 
2040d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar
2041d382aafbSBarry Smith M*/
2042d382aafbSBarry Smith 
2043d382aafbSBarry Smith /*MC
2044d382aafbSBarry Smith     PassiveScalar - PETSc type that represents a PetscScalar
2045d382aafbSBarry Smith    Level: beginner
2046d382aafbSBarry Smith 
2047d382aafbSBarry Smith     This is the same as a PetscScalar except in code that is automatically differentiated it is
2048d382aafbSBarry Smith    treated as a constant (not an indendent or dependent variable)
2049d382aafbSBarry Smith 
2050d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar
2051d382aafbSBarry Smith M*/
2052d382aafbSBarry Smith 
2053d382aafbSBarry Smith /*MC
2054d382aafbSBarry Smith     PassiveReal - PETSc type that represents a PetscReal
2055d382aafbSBarry Smith 
2056d382aafbSBarry Smith    Level: beginner
2057d382aafbSBarry Smith 
2058d382aafbSBarry Smith     This is the same as a PetscReal except in code that is automatically differentiated it is
2059d382aafbSBarry Smith    treated as a constant (not an indendent or dependent variable)
2060d382aafbSBarry Smith 
2061d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar
2062d382aafbSBarry Smith M*/
2063d382aafbSBarry Smith 
2064d382aafbSBarry Smith /*MC
2065d382aafbSBarry Smith     MPIU_SCALAR - MPI datatype corresponding to PetscScalar
2066d382aafbSBarry Smith 
2067d382aafbSBarry Smith    Level: beginner
2068d382aafbSBarry Smith 
2069d382aafbSBarry Smith     Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars
2070d382aafbSBarry Smith           pass this value
2071d382aafbSBarry Smith 
2072d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT
2073d382aafbSBarry Smith M*/
2074d382aafbSBarry Smith 
2075d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO)
2076d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN)
2077d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*);
2078d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*);
2079d382aafbSBarry Smith #else
2080d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e)
2081d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e)
2082d382aafbSBarry Smith #endif
2083d382aafbSBarry Smith #endif
2084d382aafbSBarry Smith 
2085d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */
2086d382aafbSBarry Smith 
2087d382aafbSBarry Smith /* Limit MPI to 32-bits */
2088d382aafbSBarry Smith #define PETSC_MPI_INT_MAX  2147483647
2089d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647
2090d382aafbSBarry Smith /* Limit BLAS to 32-bits */
2091d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX  2147483647
2092d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647
2093d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */
2094d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX  2147483647
2095d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647
2096d382aafbSBarry Smith 
2097d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES)
2098e32f2f54SBarry Smith #define PetscMPIIntCheck(a)  if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI")
2099e32f2f54SBarry Smith #define PetscBLASIntCheck(a)  if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK")
2100eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a)
2101eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a)
2102d382aafbSBarry Smith 
2103d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4)
2104e32f2f54SBarry Smith #define PetscHDF5IntCheck(a)  if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5")
2105eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a)
2106d382aafbSBarry Smith #else
2107d382aafbSBarry Smith #define PetscHDF5IntCheck(a)
2108d382aafbSBarry Smith #define PetscHDF5IntCast(a) a
2109d382aafbSBarry Smith #endif
2110d382aafbSBarry Smith 
2111d382aafbSBarry Smith #else
2112d382aafbSBarry Smith #define PetscMPIIntCheck(a)
2113d382aafbSBarry Smith #define PetscBLASIntCheck(a)
2114d382aafbSBarry Smith #define PetscHDF5IntCheck(a)
2115d382aafbSBarry Smith #define PetscMPIIntCast(a) a
2116d382aafbSBarry Smith #define PetscBLASIntCast(a) a
2117d382aafbSBarry Smith #define PetscHDF5IntCast(a) a
2118d382aafbSBarry Smith #endif
2119d382aafbSBarry Smith 
2120d382aafbSBarry Smith 
2121d382aafbSBarry Smith /*
2122d382aafbSBarry Smith      The IBM include files define hz, here we hide it so that it may be used
2123d382aafbSBarry Smith    as a regular user variable.
2124d382aafbSBarry Smith */
2125d382aafbSBarry Smith #if defined(hz)
2126d382aafbSBarry Smith #undef hz
2127d382aafbSBarry Smith #endif
2128d382aafbSBarry Smith 
2129d382aafbSBarry Smith /*  For arrays that contain filenames or paths */
2130d382aafbSBarry Smith 
2131d382aafbSBarry Smith 
2132d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H)
2133d382aafbSBarry Smith #include <limits.h>
2134d382aafbSBarry Smith #endif
2135d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H)
2136d382aafbSBarry Smith #include <sys/param.h>
2137d382aafbSBarry Smith #endif
2138d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H)
2139d382aafbSBarry Smith #include <sys/types.h>
2140d382aafbSBarry Smith #endif
2141d382aafbSBarry Smith #if defined(MAXPATHLEN)
2142d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     MAXPATHLEN
2143d382aafbSBarry Smith #elif defined(MAX_PATH)
2144d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     MAX_PATH
2145d382aafbSBarry Smith #elif defined(_MAX_PATH)
2146d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     _MAX_PATH
2147d382aafbSBarry Smith #else
2148d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     4096
2149d382aafbSBarry Smith #endif
2150d382aafbSBarry Smith 
2151d382aafbSBarry Smith /* Special support for C++ */
2152d382aafbSBarry Smith #include "petscsys.hh"
21536c7e564aSBarry Smith 
2154d382aafbSBarry Smith 
2155d382aafbSBarry Smith /*MC
2156d382aafbSBarry Smith 
2157d382aafbSBarry Smith     UsingFortran - Fortran can be used with PETSc in four distinct approaches
2158d382aafbSBarry Smith 
2159d382aafbSBarry Smith $    1) classic Fortran 77 style
2160d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc
2161d382aafbSBarry Smith $       XXX variablename
2162d382aafbSBarry Smith $      You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines
2163d382aafbSBarry Smith $      which end in F90; such as VecGetArrayF90()
2164d382aafbSBarry Smith $
2165d382aafbSBarry Smith $    2) classic Fortran 90 style
2166d1716517SSatish Balay $#include "finclude/petscXXX.h"
2167d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc
2168d382aafbSBarry Smith $       XXX variablename
2169d382aafbSBarry Smith $
2170d382aafbSBarry Smith $    3) Using Fortran modules
2171d1716517SSatish Balay $#include "finclude/petscXXXdef.h"
2172d382aafbSBarry Smith $         use petscXXXX
2173d382aafbSBarry Smith $       XXX variablename
2174d382aafbSBarry Smith $
2175d382aafbSBarry Smith $    4) Use Fortran modules and Fortran data types for PETSc types
2176d1716517SSatish Balay $#include "finclude/petscXXXdef.h"
2177d382aafbSBarry Smith $         use petscXXXX
2178d382aafbSBarry Smith $       type(XXX) variablename
2179e2e64c6bSBarry Smith $      To use this approach you must ./configure PETSc with the additional
2180d382aafbSBarry Smith $      option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules
2181d382aafbSBarry Smith 
2182d382aafbSBarry Smith     Finally if you absolutely do not want to use any #include you can use either
2183d382aafbSBarry Smith 
2184d382aafbSBarry Smith $    3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc
2185d382aafbSBarry Smith $        and you must declare the variables as integer, for example
2186d382aafbSBarry Smith $        integer variablename
2187d382aafbSBarry Smith $
2188d382aafbSBarry Smith $    4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type
2189d382aafbSBarry Smith $        names like PetscErrorCode, PetscInt etc. again for those you must use integer
2190d382aafbSBarry Smith 
2191d382aafbSBarry Smith    We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking
2192d382aafbSBarry Smith for only a few PETSc functions.
2193d382aafbSBarry Smith 
2194d382aafbSBarry Smith    Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value
2195d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues()
2196d382aafbSBarry Smith you cannot have something like
2197d382aafbSBarry Smith $      PetscInt row,col
2198d382aafbSBarry Smith $      PetscScalar val
2199d382aafbSBarry Smith $        ...
2200d382aafbSBarry Smith $      call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr)
2201d382aafbSBarry Smith You must instead have
2202d382aafbSBarry Smith $      PetscInt row(1),col(1)
2203d382aafbSBarry Smith $      PetscScalar val(1)
2204d382aafbSBarry Smith $        ...
2205d382aafbSBarry Smith $      call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr)
2206d382aafbSBarry Smith 
2207d382aafbSBarry Smith 
2208d382aafbSBarry Smith     See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches
2209d382aafbSBarry Smith 
2210d382aafbSBarry Smith     Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these
2211d382aafbSBarry Smith      automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h
2212d382aafbSBarry Smith 
2213d382aafbSBarry Smith      The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include
2214d382aafbSBarry Smith      their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors;  for example
2215d382aafbSBarry Smith      finclude/petscvec.h does NOT automatically include finclude/petscis.h
2216d382aafbSBarry Smith 
2217d382aafbSBarry Smith      The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the
2218e2e64c6bSBarry Smith      Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option.
2219d382aafbSBarry Smith 
2220d382aafbSBarry Smith      The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for
2221d382aafbSBarry Smith      the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90).
2222d382aafbSBarry Smith 
2223d382aafbSBarry Smith      The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated
2224d382aafbSBarry Smith      automatically by "make allfortranstubs".
2225d382aafbSBarry Smith 
2226e2e64c6bSBarry Smith      The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure
2227d382aafbSBarry Smith      was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically
2228d382aafbSBarry Smith      include their predecessors
2229d382aafbSBarry Smith 
2230d382aafbSBarry Smith     Level: beginner
2231d382aafbSBarry Smith 
2232d382aafbSBarry Smith M*/
2233d382aafbSBarry Smith 
22347087cfbeSBarry Smith extern PetscErrorCode  PetscGetArchType(char[],size_t);
22357087cfbeSBarry Smith extern PetscErrorCode  PetscGetHostName(char[],size_t);
22367087cfbeSBarry Smith extern PetscErrorCode  PetscGetUserName(char[],size_t);
22377087cfbeSBarry Smith extern PetscErrorCode  PetscGetProgramName(char[],size_t);
22387087cfbeSBarry Smith extern PetscErrorCode  PetscSetProgramName(const char[]);
22397087cfbeSBarry Smith extern PetscErrorCode  PetscGetDate(char[],size_t);
2240d382aafbSBarry Smith 
22417087cfbeSBarry Smith extern PetscErrorCode  PetscSortInt(PetscInt,PetscInt[]);
22427087cfbeSBarry Smith extern PetscErrorCode  PetscSortRemoveDupsInt(PetscInt*,PetscInt[]);
22437087cfbeSBarry Smith extern PetscErrorCode  PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]);
22447087cfbeSBarry Smith extern PetscErrorCode  PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]);
22457087cfbeSBarry Smith extern PetscErrorCode  PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]);
2246d7aa01a8SHong Zhang extern PetscErrorCode  PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*);
22477087cfbeSBarry Smith extern PetscErrorCode  PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]);
22487087cfbeSBarry Smith extern PetscErrorCode  PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]);
22497087cfbeSBarry Smith extern PetscErrorCode  PetscSortReal(PetscInt,PetscReal[]);
22507087cfbeSBarry Smith extern PetscErrorCode  PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]);
22517087cfbeSBarry Smith extern PetscErrorCode  PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]);
22527087cfbeSBarry Smith extern PetscErrorCode  PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]);
22537087cfbeSBarry Smith extern PetscErrorCode  PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**);
22549b67c4b3SDmitry Karpeev extern PetscErrorCode  PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**);
2255d382aafbSBarry Smith 
22567087cfbeSBarry Smith extern PetscErrorCode  PetscSetDisplay(void);
22577087cfbeSBarry Smith extern PetscErrorCode  PetscGetDisplay(char[],size_t);
2258d382aafbSBarry Smith 
225976bdecfbSBarry Smith /*J
2260d382aafbSBarry Smith     PetscRandomType - String with the name of a PETSc randomizer
2261d382aafbSBarry Smith        with an optional dynamic library name, for example
2262d382aafbSBarry Smith        http://www.mcs.anl.gov/petsc/lib.a:myrandcreate()
2263d382aafbSBarry Smith 
2264d382aafbSBarry Smith    Level: beginner
2265d382aafbSBarry Smith 
2266e2e64c6bSBarry Smith    Notes: to use the SPRNG you must have ./configure PETSc
2267d382aafbSBarry Smith    with the option --download-sprng
2268d382aafbSBarry Smith 
2269d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom
227076bdecfbSBarry Smith J*/
2271d382aafbSBarry Smith #define PetscRandomType char*
2272d382aafbSBarry Smith #define PETSCRAND       "rand"
2273d382aafbSBarry Smith #define PETSCRAND48     "rand48"
2274d382aafbSBarry Smith #define PETSCSPRNG      "sprng"
2275d382aafbSBarry Smith 
2276d382aafbSBarry Smith /* Logging support */
22777087cfbeSBarry Smith extern  PetscClassId PETSC_RANDOM_CLASSID;
2278d382aafbSBarry Smith 
22797087cfbeSBarry Smith extern PetscErrorCode  PetscRandomInitializePackage(const char[]);
2280d382aafbSBarry Smith 
2281d382aafbSBarry Smith /*S
2282d382aafbSBarry Smith      PetscRandom - Abstract PETSc object that manages generating random numbers
2283d382aafbSBarry Smith 
2284d382aafbSBarry Smith    Level: intermediate
2285d382aafbSBarry Smith 
2286d382aafbSBarry Smith   Concepts: random numbers
2287d382aafbSBarry Smith 
2288d382aafbSBarry Smith .seealso:  PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType
2289d382aafbSBarry Smith S*/
2290d382aafbSBarry Smith typedef struct _p_PetscRandom*   PetscRandom;
2291d382aafbSBarry Smith 
2292d382aafbSBarry Smith /* Dynamic creation and loading functions */
2293d382aafbSBarry Smith extern PetscFList PetscRandomList;
2294ace3abfcSBarry Smith extern PetscBool  PetscRandomRegisterAllCalled;
2295d382aafbSBarry Smith 
22967087cfbeSBarry Smith extern PetscErrorCode  PetscRandomRegisterAll(const char []);
22977087cfbeSBarry Smith extern PetscErrorCode  PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom));
22987087cfbeSBarry Smith extern PetscErrorCode  PetscRandomRegisterDestroy(void);
22997087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetType(PetscRandom, const PetscRandomType);
23007087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetFromOptions(PetscRandom);
23017087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetType(PetscRandom, const PetscRandomType*);
23027087cfbeSBarry Smith extern PetscErrorCode  PetscRandomViewFromOptions(PetscRandom,char*);
23037087cfbeSBarry Smith extern PetscErrorCode  PetscRandomView(PetscRandom,PetscViewer);
2304d382aafbSBarry Smith 
2305d382aafbSBarry Smith /*MC
2306d382aafbSBarry Smith   PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation
2307d382aafbSBarry Smith 
2308d382aafbSBarry Smith   Synopsis:
23091890ba74SBarry Smith   PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom))
2310d382aafbSBarry Smith 
2311d382aafbSBarry Smith   Not Collective
2312d382aafbSBarry Smith 
2313d382aafbSBarry Smith   Input Parameters:
2314d382aafbSBarry Smith + name        - The name of a new user-defined creation routine
2315d382aafbSBarry Smith . path        - The path (either absolute or relative) of the library containing this routine
2316d382aafbSBarry Smith . func_name   - The name of routine to create method context
2317d382aafbSBarry Smith - create_func - The creation routine itself
2318d382aafbSBarry Smith 
2319d382aafbSBarry Smith   Notes:
2320d382aafbSBarry Smith   PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators
2321d382aafbSBarry Smith 
2322d382aafbSBarry Smith   If dynamic libraries are used, then the fourth input argument (routine_create) is ignored.
2323d382aafbSBarry Smith 
2324d382aafbSBarry Smith   Sample usage:
2325d382aafbSBarry Smith .vb
2326d382aafbSBarry Smith     PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate);
2327d382aafbSBarry Smith .ve
2328d382aafbSBarry Smith 
2329d382aafbSBarry Smith   Then, your random type can be chosen with the procedural interface via
2330d382aafbSBarry Smith .vb
2331d382aafbSBarry Smith     PetscRandomCreate(MPI_Comm, PetscRandom *);
2332d382aafbSBarry Smith     PetscRandomSetType(PetscRandom,"my_random_name");
2333d382aafbSBarry Smith .ve
2334d382aafbSBarry Smith    or at runtime via the option
2335d382aafbSBarry Smith .vb
2336d382aafbSBarry Smith     -random_type my_random_name
2337d382aafbSBarry Smith .ve
2338d382aafbSBarry Smith 
2339d382aafbSBarry Smith   Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values.
2340d382aafbSBarry Smith 
2341d382aafbSBarry Smith          For an example of the code needed to interface your own random number generator see
2342d382aafbSBarry Smith          src/sys/random/impls/rand/rand.c
2343d382aafbSBarry Smith 
2344d382aafbSBarry Smith   Level: advanced
2345d382aafbSBarry Smith 
2346d382aafbSBarry Smith .keywords: PetscRandom, register
2347d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister()
2348d382aafbSBarry Smith M*/
2349d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
2350d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0)
2351d382aafbSBarry Smith #else
2352d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d)
2353d382aafbSBarry Smith #endif
2354d382aafbSBarry Smith 
23557087cfbeSBarry Smith extern PetscErrorCode  PetscRandomCreate(MPI_Comm,PetscRandom*);
23567087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetValue(PetscRandom,PetscScalar*);
23577087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetValueReal(PetscRandom,PetscReal*);
23587087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*);
23597087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar);
23607087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetSeed(PetscRandom,unsigned long);
23617087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetSeed(PetscRandom,unsigned long *);
23627087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSeed(PetscRandom);
2363fcfd50ebSBarry Smith extern PetscErrorCode  PetscRandomDestroy(PetscRandom*);
2364d382aafbSBarry Smith 
23657087cfbeSBarry Smith extern PetscErrorCode  PetscGetFullPath(const char[],char[],size_t);
23667087cfbeSBarry Smith extern PetscErrorCode  PetscGetRelativePath(const char[],char[],size_t);
23677087cfbeSBarry Smith extern PetscErrorCode  PetscGetWorkingDirectory(char[],size_t);
23687087cfbeSBarry Smith extern PetscErrorCode  PetscGetRealPath(const char[],char[]);
23697087cfbeSBarry Smith extern PetscErrorCode  PetscGetHomeDirectory(char[],size_t);
23707087cfbeSBarry Smith extern PetscErrorCode  PetscTestFile(const char[],char,PetscBool *);
23717087cfbeSBarry Smith extern PetscErrorCode  PetscTestDirectory(const char[],char,PetscBool *);
2372d382aafbSBarry Smith 
23737087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryRead(int,void*,PetscInt,PetscDataType);
23747087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType);
23757087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool );
23767087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool );
23777087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryOpen(const char[],PetscFileMode,int *);
23787087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryClose(int);
23797087cfbeSBarry Smith extern PetscErrorCode  PetscSharedTmp(MPI_Comm,PetscBool  *);
23807087cfbeSBarry Smith extern PetscErrorCode  PetscSharedWorkingDirectory(MPI_Comm,PetscBool  *);
23817087cfbeSBarry Smith extern PetscErrorCode  PetscGetTmp(MPI_Comm,char[],size_t);
23827087cfbeSBarry Smith extern PetscErrorCode  PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *);
23837087cfbeSBarry Smith extern PetscErrorCode  PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *);
23847087cfbeSBarry Smith extern PetscErrorCode  PetscOpenSocket(char*,int,int*);
23857087cfbeSBarry Smith extern PetscErrorCode  PetscWebServe(MPI_Comm,int);
2386d382aafbSBarry Smith 
2387d382aafbSBarry Smith /*
2388d382aafbSBarry Smith    In binary files variables are stored using the following lengths,
2389d382aafbSBarry Smith   regardless of how they are stored in memory on any one particular
2390d382aafbSBarry Smith   machine. Use these rather then sizeof() in computing sizes for
2391d382aafbSBarry Smith   PetscBinarySeek().
2392d382aafbSBarry Smith */
2393d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE   (32/8)
2394d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE  (32/8)
2395d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE  (8/8)
2396d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE  (16/8)
2397d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE  (64/8)
2398d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE  sizeof(PetscScalar)
2399d382aafbSBarry Smith 
2400d382aafbSBarry Smith /*E
2401d382aafbSBarry Smith   PetscBinarySeekType - argument to PetscBinarySeek()
2402d382aafbSBarry Smith 
2403d382aafbSBarry Smith   Level: advanced
2404d382aafbSBarry Smith 
2405d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek()
2406d382aafbSBarry Smith E*/
2407d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType;
24087087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*);
24097087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*);
241046090da6SBarry Smith extern PetscErrorCode  PetscByteSwap(void *,PetscDataType,PetscInt);
2411d382aafbSBarry Smith 
24127087cfbeSBarry Smith extern PetscErrorCode  PetscSetDebugTerminal(const char[]);
24137087cfbeSBarry Smith extern PetscErrorCode  PetscSetDebugger(const char[],PetscBool );
24147087cfbeSBarry Smith extern PetscErrorCode  PetscSetDefaultDebugger(void);
24157c764164SBarry Smith extern PetscErrorCode  PetscSetDebuggerFromString(const char*);
24167087cfbeSBarry Smith extern PetscErrorCode  PetscAttachDebugger(void);
24177087cfbeSBarry Smith extern PetscErrorCode  PetscStopForDebugger(void);
2418d382aafbSBarry Smith 
24197087cfbeSBarry Smith extern PetscErrorCode  PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*);
24207087cfbeSBarry Smith extern PetscErrorCode  PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**);
24217087cfbeSBarry Smith extern PetscErrorCode  PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**);
24227087cfbeSBarry Smith extern PetscErrorCode  PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**);
24237087cfbeSBarry Smith extern PetscErrorCode  PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**);
2424d382aafbSBarry Smith 
24257087cfbeSBarry Smith extern PetscErrorCode  PetscSSEIsEnabled(MPI_Comm,PetscBool  *,PetscBool  *);
2426d382aafbSBarry Smith 
2427d382aafbSBarry Smith /*E
2428d382aafbSBarry Smith   InsertMode - Whether entries are inserted or added into vectors or matrices
2429d382aafbSBarry Smith 
2430d382aafbSBarry Smith   Level: beginner
2431d382aafbSBarry Smith 
2432d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2433d382aafbSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(),
2434d382aafbSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd()
2435d382aafbSBarry Smith E*/
243611f088b5SMatthew G Knepley  typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode;
2437d382aafbSBarry Smith 
2438d382aafbSBarry Smith /*MC
2439d382aafbSBarry Smith     INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value
2440d382aafbSBarry Smith 
2441d382aafbSBarry Smith     Level: beginner
2442d382aafbSBarry Smith 
2443d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2444eca87e8dSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES,
2445eca87e8dSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES
2446d382aafbSBarry Smith 
2447d382aafbSBarry Smith M*/
2448d382aafbSBarry Smith 
2449d382aafbSBarry Smith /*MC
2450d382aafbSBarry Smith     ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the
2451d382aafbSBarry Smith                 value into that location
2452d382aafbSBarry Smith 
2453d382aafbSBarry Smith     Level: beginner
2454d382aafbSBarry Smith 
2455d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2456eca87e8dSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES,
2457eca87e8dSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES
2458d382aafbSBarry Smith 
2459d382aafbSBarry Smith M*/
2460d382aafbSBarry Smith 
2461d382aafbSBarry Smith /*MC
2462d382aafbSBarry Smith     MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location
2463d382aafbSBarry Smith 
2464d382aafbSBarry Smith     Level: beginner
2465d382aafbSBarry Smith 
2466d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES
2467d382aafbSBarry Smith 
2468d382aafbSBarry Smith M*/
2469d382aafbSBarry Smith 
2470d382aafbSBarry Smith /*S
2471d382aafbSBarry Smith    PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT
2472d382aafbSBarry Smith 
2473d382aafbSBarry Smith    Level: advanced
2474d382aafbSBarry Smith 
2475d382aafbSBarry Smith    Concepts: communicator, create
2476d382aafbSBarry Smith S*/
2477d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm;
2478d382aafbSBarry Smith 
2479d382aafbSBarry Smith struct _n_PetscSubcomm {
2480d382aafbSBarry Smith   MPI_Comm   parent;      /* parent communicator */
2481d382aafbSBarry Smith   MPI_Comm   dupparent;   /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */
2482d382aafbSBarry Smith   MPI_Comm   comm;        /* this communicator */
2483d382aafbSBarry Smith   PetscInt   n;           /* num of subcommunicators under the parent communicator */
2484d382aafbSBarry Smith   PetscInt   color;       /* color of processors belong to this communicator */
2485d382aafbSBarry Smith };
2486d382aafbSBarry Smith 
2487638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType;
2488638faf0bSHong Zhang extern const char *PetscSubcommTypes[];
2489638faf0bSHong Zhang 
24907087cfbeSBarry Smith extern PetscErrorCode  PetscSubcommCreate(MPI_Comm,PetscSubcomm*);
2491fcfd50ebSBarry Smith extern PetscErrorCode  PetscSubcommDestroy(PetscSubcomm*);
24927087cfbeSBarry Smith extern PetscErrorCode  PetscSubcommSetNumber(PetscSubcomm,PetscInt);
24937c764164SBarry Smith extern PetscErrorCode  PetscSubcommSetType(PetscSubcomm,PetscSubcommType);
24947087cfbeSBarry Smith extern PetscErrorCode  PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt);
2495d382aafbSBarry Smith 
249682a7e548SBarry Smith #include <petscctable.h>
249782a7e548SBarry Smith 
2498d382aafbSBarry Smith PETSC_EXTERN_CXX_END
24996c7e564aSBarry Smith 
25009e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */
25019e03d832SJed Brown #undef __FUNCT__
25029e03d832SJed Brown #define __FUNCT__ "User provided function"
25039e03d832SJed Brown 
2504d382aafbSBarry Smith #endif
2505