1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 14241f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14341f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14441f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 14541f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 14641f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 14741f4af4cSSatish Balay # endif 14841f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 14941f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 15041f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 15141f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 15241f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15341f4af4cSSatish Balay # endif 154a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 15541f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 156a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 157ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 158a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 159a7886beaSBarry Smith # endif 160a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 161a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 162a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 163ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 164c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 165a7886beaSBarry Smith # endif 16641f4af4cSSatish Balay #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 16741f4af4cSSatish Balay # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 168a7886beaSBarry Smith #endif 169a7886beaSBarry Smith 170a7886beaSBarry Smith /* 1712981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 172d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 173d382aafbSBarry Smith */ 174d382aafbSBarry Smith #include <stdio.h> 175d382aafbSBarry Smith 176d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 177d382aafbSBarry Smith #if !defined(MPIAPI) 178d382aafbSBarry Smith #define MPIAPI 179d382aafbSBarry Smith #endif 180d382aafbSBarry Smith 1811cc8b206SBarry Smith /* 1821cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1831cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1841cc8b206SBarry Smith does not match the actual type of the argument being passed in 1851cc8b206SBarry Smith */ 186c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 187894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 188894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1898ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1908ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 191894dd566SJed Brown # endif 192894dd566SJed Brown #endif 193894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 194894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1958ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1968ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 197894dd566SJed Brown #endif 198b3506946SBarry Smith 199d382aafbSBarry Smith /*MC 2001957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 201d382aafbSBarry Smith 202d382aafbSBarry Smith Level: beginner 203d382aafbSBarry Smith 204d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 205d382aafbSBarry Smith M*/ 206d382aafbSBarry Smith typedef int PetscErrorCode; 207d382aafbSBarry Smith 208d382aafbSBarry Smith /*MC 209d382aafbSBarry Smith 210503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 211d382aafbSBarry Smith 2121957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 2131957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2141957e957SBarry Smith 2151957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2161957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2171957e957SBarry Smith 2181957e957SBarry Smith Level: developer 219d382aafbSBarry Smith 2200700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 221d382aafbSBarry Smith M*/ 2220700a824SBarry Smith typedef int PetscClassId; 223d382aafbSBarry Smith 224d382aafbSBarry Smith 225d382aafbSBarry Smith /*MC 226d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 227d382aafbSBarry Smith 228d382aafbSBarry Smith Level: intermediate 229d382aafbSBarry Smith 230d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2313b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 232d382aafbSBarry Smith 2334dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2342981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 235d382aafbSBarry Smith 2361cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 237d382aafbSBarry Smith 238d382aafbSBarry Smith M*/ 239d382aafbSBarry Smith typedef int PetscMPIInt; 240d382aafbSBarry Smith 241d382aafbSBarry Smith /*MC 242d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 243d382aafbSBarry Smith 244d382aafbSBarry Smith Level: intermediate 245d382aafbSBarry Smith 246d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 247d382aafbSBarry Smith M*/ 248d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2495a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 250d382aafbSBarry Smith 251fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 252fab38c73SJed Brown #include <stdint.h> 253fab38c73SJed Brown #endif 254a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 25513e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 256a05e1a72SSatish Balay #include <inttypes.h> 25737354ed4SSatish Balay # if !defined(PRId64) 25837354ed4SSatish Balay # define PRId64 "ld" 25937354ed4SSatish Balay # endif 260a05e1a72SSatish Balay #endif 261fab38c73SJed Brown 26299a4b90dSDave May typedef short PetscShort; 26399a4b90dSDave May typedef char PetscChar; 26499a4b90dSDave May typedef float PetscFloat; 26599a4b90dSDave May 266d382aafbSBarry Smith /*MC 267d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2683b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 269d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 270d382aafbSBarry Smith 271390e1bf2SBarry Smith 272390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of 273390e1bf2SBarry Smith the size of PetscInt 274390e1bf2SBarry Smith 275d382aafbSBarry Smith Level: intermediate 276d382aafbSBarry Smith 277d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 278d382aafbSBarry Smith M*/ 27937354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 280bafee8b4SSatish Balay typedef int64_t PetscInt64; 281bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 282a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 283fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 284bafee8b4SSatish Balay typedef long long PetscInt64; 285bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 286a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 287f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 288bafee8b4SSatish Balay typedef __int64 PetscInt64; 289bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 290a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 291236ed0a3SSatish Balay #else 292bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 293236ed0a3SSatish Balay #endif 294d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 295bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 296bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 297a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 298d382aafbSBarry Smith #else 299d382aafbSBarry Smith typedef int PetscInt; 300d382aafbSBarry Smith #define MPIU_INT MPI_INT 301a05e1a72SSatish Balay #define PetscInt_FMT "d" 302d382aafbSBarry Smith #endif 303d382aafbSBarry Smith 304702bc34aSSatish Balay /*MC 305702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 306702bc34aSSatish Balay 307702bc34aSSatish Balay Level: intermediate 308702bc34aSSatish Balay 309702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 310702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 311702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 312702bc34aSSatish Balay 313c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3142981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 315702bc34aSSatish Balay 3162981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 317702bc34aSSatish Balay if you run ./configure with the option 318149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3192981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3202981ebdbSBarry Smith 321390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 322390e1bf2SBarry Smith --known-64-bit-blas-indices 323390e1bf2SBarry Smith 324390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 325390e1bf2SBarry Smith will build a 64 bit integer version 3262981ebdbSBarry Smith 3272981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 328702bc34aSSatish Balay 329702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 330702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 331702bc34aSSatish Balay 3321cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 333702bc34aSSatish Balay 334702bc34aSSatish Balay M*/ 335702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 336bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 337702bc34aSSatish Balay #else 338702bc34aSSatish Balay typedef int PetscBLASInt; 339702bc34aSSatish Balay #endif 340702bc34aSSatish Balay 341503cfb0cSBarry Smith /* 342503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 343503cfb0cSBarry Smith */ 344d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 345adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 346d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 347adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 348d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 349adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 350d382aafbSBarry Smith #else 351d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 352d382aafbSBarry Smith #endif 353d382aafbSBarry Smith 354d382aafbSBarry Smith /* 355d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 356d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 357d382aafbSBarry Smith */ 358014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 359d382aafbSBarry Smith 360d382aafbSBarry Smith /* 361d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 362d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 363d382aafbSBarry Smith */ 364014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 365d382aafbSBarry Smith 366d382aafbSBarry Smith /*MC 367d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 368d382aafbSBarry Smith 369d382aafbSBarry Smith Synopsis: 370aaa7dc30SBarry Smith #include <petscsys.h> 371ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 372d382aafbSBarry Smith 373eca87e8dSBarry Smith Not Collective 374eca87e8dSBarry Smith 375d382aafbSBarry Smith Input Parameters: 376d382aafbSBarry Smith . cond - condition or expression 377d382aafbSBarry Smith 378d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 379d382aafbSBarry Smith branch is unlikely. 380d382aafbSBarry Smith 381d382aafbSBarry Smith Level: advanced 382d382aafbSBarry Smith 383d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 384d382aafbSBarry Smith M*/ 385d382aafbSBarry Smith 386d382aafbSBarry Smith /*MC 387d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 388d382aafbSBarry Smith 389d382aafbSBarry Smith Synopsis: 390aaa7dc30SBarry Smith #include <petscsys.h> 39123072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 392d382aafbSBarry Smith 393eca87e8dSBarry Smith Not Collective 394eca87e8dSBarry Smith 395d382aafbSBarry Smith Input Parameters: 396d382aafbSBarry Smith . cond - condition or expression 397d382aafbSBarry Smith 398d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 399d382aafbSBarry Smith branch is likely. 400d382aafbSBarry Smith 401d382aafbSBarry Smith Level: advanced 402d382aafbSBarry Smith 403d382aafbSBarry Smith .seealso: PetscUnlikely() 404d382aafbSBarry Smith M*/ 405d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 406d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 407d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 408d382aafbSBarry Smith #else 409cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 410cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 411d382aafbSBarry Smith #endif 412d382aafbSBarry Smith 413d382aafbSBarry Smith /* 414d382aafbSBarry Smith Declare extern C stuff after including external header files 415d382aafbSBarry Smith */ 416d382aafbSBarry Smith 417d382aafbSBarry Smith 418d382aafbSBarry Smith /* 419d382aafbSBarry Smith Basic PETSc constants 420d382aafbSBarry Smith */ 421d382aafbSBarry Smith 422d382aafbSBarry Smith /*E 423ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 424d382aafbSBarry Smith 425d382aafbSBarry Smith Level: beginner 426d382aafbSBarry Smith 427ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 42834e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 42934e82e7dSBarry Smith 4301cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 431d382aafbSBarry Smith E*/ 432ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4336a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4345a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 43570b3c8c7SBarry Smith 4368b49ba18SBarry Smith /* 437390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4388b49ba18SBarry Smith */ 4398b49ba18SBarry Smith #include <petscmath.h> 4408b49ba18SBarry Smith 44170b3c8c7SBarry Smith /*E 44270b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 44370b3c8c7SBarry Smith 44470b3c8c7SBarry Smith Level: beginner 44570b3c8c7SBarry Smith 44670b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 44770b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 44870b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 44970b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 45070b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 45170b3c8c7SBarry Smith 45270b3c8c7SBarry Smith E*/ 45370b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4546a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 455d382aafbSBarry Smith 456d382aafbSBarry Smith /*MC 457ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 458d382aafbSBarry Smith 459d382aafbSBarry Smith Level: beginner 460d382aafbSBarry Smith 461d382aafbSBarry Smith Note: Zero integer 462d382aafbSBarry Smith 463ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 464d382aafbSBarry Smith M*/ 465d382aafbSBarry Smith 466d382aafbSBarry Smith /*MC 467ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 468d382aafbSBarry Smith 469d382aafbSBarry Smith Level: beginner 470d382aafbSBarry Smith 471d382aafbSBarry Smith Note: Nonzero integer 472d382aafbSBarry Smith 473ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 474d382aafbSBarry Smith M*/ 475d382aafbSBarry Smith 476d382aafbSBarry Smith /*MC 4770298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 478d382aafbSBarry Smith 479d382aafbSBarry Smith Level: beginner 480d382aafbSBarry Smith 481d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 482d382aafbSBarry Smith some default 483d382aafbSBarry Smith 484d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 485d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 486d382aafbSBarry Smith 487d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 488d382aafbSBarry Smith 489d382aafbSBarry Smith M*/ 4900298fd71SBarry Smith #define PETSC_IGNORE NULL 491d382aafbSBarry Smith 492c528d872SBarry Smith /* This is deprecated */ 493c528d872SBarry Smith #define PETSC_NULL NULL 494c528d872SBarry Smith 495d382aafbSBarry Smith /*MC 496557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 497557d4da8SBarry Smith where you wish PETSc to use the default. 498557d4da8SBarry Smith 499557d4da8SBarry Smith Level: beginner 500557d4da8SBarry Smith 501557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 502557d4da8SBarry Smith 503557d4da8SBarry Smith M*/ 504557d4da8SBarry Smith #define PETSC_DECIDE -1 505557d4da8SBarry Smith 506557d4da8SBarry Smith /*MC 507d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 508d382aafbSBarry Smith where you wish PETSc to compute the required value. 509d382aafbSBarry Smith 510d382aafbSBarry Smith Level: beginner 511d382aafbSBarry Smith 512557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 513557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 514557d4da8SBarry Smith 5150298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 516d382aafbSBarry Smith 517d382aafbSBarry Smith M*/ 518d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 519d382aafbSBarry Smith 520d382aafbSBarry Smith /*MC 521557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 522557d4da8SBarry Smith where you wish PETSc to use the default. 523557d4da8SBarry Smith 524557d4da8SBarry Smith Level: beginner 525557d4da8SBarry Smith 5262d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 527557d4da8SBarry Smith 5280298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 529557d4da8SBarry Smith 530557d4da8SBarry Smith M*/ 531557d4da8SBarry Smith #define PETSC_DEFAULT -2 532557d4da8SBarry Smith 533557d4da8SBarry Smith /*MC 534d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 535d382aafbSBarry Smith all the processs that PETSc knows about. 536d382aafbSBarry Smith 537d382aafbSBarry Smith Level: beginner 538d382aafbSBarry Smith 539d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 540d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 541d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 542a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 543a990b902SBarry Smith 544a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 545a990b902SBarry Smith is called because it may not have a valid value yet. 546d382aafbSBarry Smith 547d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 548d382aafbSBarry Smith 549d382aafbSBarry Smith M*/ 550014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 551d382aafbSBarry Smith 552d382aafbSBarry Smith /*MC 553503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 554d382aafbSBarry Smith 555d382aafbSBarry Smith Level: beginner 556d382aafbSBarry Smith 557a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 558a990b902SBarry Smith 559d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 560d382aafbSBarry Smith 561d382aafbSBarry Smith M*/ 562d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 563d382aafbSBarry Smith 564d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 565014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 566014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 567014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5684cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 56982f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 570d382aafbSBarry Smith 571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 574d382aafbSBarry Smith 575d382aafbSBarry Smith /*MC 57695dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 577d382aafbSBarry Smith 578eca87e8dSBarry Smith Synopsis: 579aaa7dc30SBarry Smith #include <petscsys.h> 580eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 581eca87e8dSBarry Smith 582eca87e8dSBarry Smith Not Collective 583eca87e8dSBarry Smith 584d382aafbSBarry Smith Input Parameter: 585d382aafbSBarry Smith . m - number of bytes to allocate 586d382aafbSBarry Smith 587d382aafbSBarry Smith Output Parameter: 588d382aafbSBarry Smith . result - memory allocated 589d382aafbSBarry Smith 590d382aafbSBarry Smith Level: beginner 591d382aafbSBarry Smith 59249d7da52SJed Brown Notes: 59349d7da52SJed Brown Memory is always allocated at least double aligned 594d382aafbSBarry Smith 59549d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 596d382aafbSBarry Smith 597d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 598d382aafbSBarry Smith 599d382aafbSBarry Smith Concepts: memory allocation 600d382aafbSBarry Smith 601d382aafbSBarry Smith M*/ 60249d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 603d382aafbSBarry Smith 604d382aafbSBarry Smith /*MC 6053221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6063221ece2SMatthew G. Knepley 6073221ece2SMatthew G. Knepley Synopsis: 6083221ece2SMatthew G. Knepley #include <petscsys.h> 6093221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6103221ece2SMatthew G. Knepley 6113221ece2SMatthew G. Knepley Not Collective 6123221ece2SMatthew G. Knepley 6133221ece2SMatthew G. Knepley Input Parameters: 6143221ece2SMatthew G. Knepley + m - number of bytes to allocate 6153221ece2SMatthew G. Knepley - result - initial memory allocated 6163221ece2SMatthew G. Knepley 6173221ece2SMatthew G. Knepley Output Parameter: 6183221ece2SMatthew G. Knepley . result - new memory allocated 6193221ece2SMatthew G. Knepley 6203221ece2SMatthew G. Knepley Level: developer 6213221ece2SMatthew G. Knepley 6223221ece2SMatthew G. Knepley Notes: 6233221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6243221ece2SMatthew G. Knepley 6253221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6263221ece2SMatthew G. Knepley 6273221ece2SMatthew G. Knepley Concepts: memory allocation 6283221ece2SMatthew G. Knepley 6293221ece2SMatthew G. Knepley M*/ 6303221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6313221ece2SMatthew G. Knepley 6323221ece2SMatthew G. Knepley /*MC 633503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 634d382aafbSBarry Smith 635d382aafbSBarry Smith Synopsis: 636aaa7dc30SBarry Smith #include <petscsys.h> 637d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 638d382aafbSBarry Smith 639eca87e8dSBarry Smith Not Collective 640eca87e8dSBarry Smith 641eca87e8dSBarry Smith Input Parameters: 642eca87e8dSBarry Smith . addr - address to align (any pointer type) 643eca87e8dSBarry Smith 644d382aafbSBarry Smith Level: developer 645d382aafbSBarry Smith 646d382aafbSBarry Smith .seealso: PetscMallocAlign() 647d382aafbSBarry Smith 648d382aafbSBarry Smith Concepts: memory allocation 649d382aafbSBarry Smith M*/ 650d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 651d382aafbSBarry Smith 652d382aafbSBarry Smith /*MC 653785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 654d382aafbSBarry Smith 655eca87e8dSBarry Smith Synopsis: 656aaa7dc30SBarry Smith #include <petscsys.h> 657785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 658785e854fSJed Brown 659785e854fSJed Brown Not Collective 660785e854fSJed Brown 661785e854fSJed Brown Input Parameter: 662390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 663785e854fSJed Brown 664785e854fSJed Brown Output Parameter: 665785e854fSJed Brown . r1 - memory allocated in first chunk 666785e854fSJed Brown 667390e1bf2SBarry Smith Note: This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 668390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 669390e1bf2SBarry Smith $ PetscInt *id; 670390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 671390e1bf2SBarry Smith not 672390e1bf2SBarry Smith $ PetscInt *id; 673390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 674390e1bf2SBarry Smith 675390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 676390e1bf2SBarry Smith 677390e1bf2SBarry Smith Level: beginner 678785e854fSJed Brown 6791795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 680785e854fSJed Brown 681785e854fSJed Brown Concepts: memory allocation 682785e854fSJed Brown 683785e854fSJed Brown M*/ 684*ba282f50SJed Brown #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1)) 685785e854fSJed Brown 686785e854fSJed Brown /*MC 6871795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6881795a4d1SJed Brown 6891795a4d1SJed Brown Synopsis: 690aaa7dc30SBarry Smith #include <petscsys.h> 6911795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6921795a4d1SJed Brown 6931795a4d1SJed Brown Not Collective 6941795a4d1SJed Brown 6951795a4d1SJed Brown Input Parameter: 6961795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6971795a4d1SJed Brown 6981795a4d1SJed Brown Output Parameter: 6991795a4d1SJed Brown . r1 - memory allocated in first chunk 7001795a4d1SJed Brown 701390e1bf2SBarry Smith Notes: see PetsMalloc1() for more details on usage. 702390e1bf2SBarry Smith 703390e1bf2SBarry Smith Level: beginner 7041795a4d1SJed Brown 7051795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 7061795a4d1SJed Brown 7071795a4d1SJed Brown Concepts: memory allocation 7081795a4d1SJed Brown 7091795a4d1SJed Brown M*/ 710*ba282f50SJed Brown #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1)) 7111795a4d1SJed Brown 7121795a4d1SJed Brown /*MC 713dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 714d382aafbSBarry Smith 715eca87e8dSBarry Smith Synopsis: 716aaa7dc30SBarry Smith #include <petscsys.h> 717dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 718eca87e8dSBarry Smith 719eca87e8dSBarry Smith Not Collective 720eca87e8dSBarry Smith 721d382aafbSBarry Smith Input Parameter: 722d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 723dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 724d382aafbSBarry Smith 725d382aafbSBarry Smith Output Parameter: 726d382aafbSBarry Smith + r1 - memory allocated in first chunk 727d382aafbSBarry Smith - r2 - memory allocated in second chunk 728d382aafbSBarry Smith 729d382aafbSBarry Smith Level: developer 730d382aafbSBarry Smith 7311795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 732d382aafbSBarry Smith 733d382aafbSBarry Smith Concepts: memory allocation 734d382aafbSBarry Smith 735d382aafbSBarry Smith M*/ 736*ba282f50SJed Brown #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2)) 737d382aafbSBarry Smith 738d382aafbSBarry Smith /*MC 7391795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 740d382aafbSBarry Smith 741eca87e8dSBarry Smith Synopsis: 742aaa7dc30SBarry Smith #include <petscsys.h> 7431795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 744eca87e8dSBarry Smith 745eca87e8dSBarry Smith Not Collective 746eca87e8dSBarry Smith 747d382aafbSBarry Smith Input Parameter: 748d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7491795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7501795a4d1SJed Brown 7511795a4d1SJed Brown Output Parameter: 7521795a4d1SJed Brown + r1 - memory allocated in first chunk 7531795a4d1SJed Brown - r2 - memory allocated in second chunk 7541795a4d1SJed Brown 7551795a4d1SJed Brown Level: developer 7561795a4d1SJed Brown 7571795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7581795a4d1SJed Brown 7591795a4d1SJed Brown Concepts: memory allocation 7601795a4d1SJed Brown M*/ 761*ba282f50SJed Brown #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2)) 7621795a4d1SJed Brown 7631795a4d1SJed Brown /*MC 764dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 765d382aafbSBarry Smith 766d382aafbSBarry Smith Synopsis: 767aaa7dc30SBarry Smith #include <petscsys.h> 768dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 769d382aafbSBarry Smith 770d382aafbSBarry Smith Not Collective 771d382aafbSBarry Smith 772d382aafbSBarry Smith Input Parameter: 773d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 774d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 775dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 776d382aafbSBarry Smith 777d382aafbSBarry Smith Output Parameter: 778d382aafbSBarry Smith + r1 - memory allocated in first chunk 779d382aafbSBarry Smith . r2 - memory allocated in second chunk 780d382aafbSBarry Smith - r3 - memory allocated in third chunk 781d382aafbSBarry Smith 782d382aafbSBarry Smith Level: developer 783d382aafbSBarry Smith 7841795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 785d382aafbSBarry Smith 786d382aafbSBarry Smith Concepts: memory allocation 787d382aafbSBarry Smith 788d382aafbSBarry Smith M*/ 789*ba282f50SJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3)) 790d382aafbSBarry Smith 791d382aafbSBarry Smith /*MC 7921795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 793d382aafbSBarry Smith 794eca87e8dSBarry Smith Synopsis: 795aaa7dc30SBarry Smith #include <petscsys.h> 7961795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 797eca87e8dSBarry Smith 798eca87e8dSBarry Smith Not Collective 799eca87e8dSBarry Smith 800d382aafbSBarry Smith Input Parameter: 801d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 802d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8031795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8041795a4d1SJed Brown 8051795a4d1SJed Brown Output Parameter: 8061795a4d1SJed Brown + r1 - memory allocated in first chunk 8071795a4d1SJed Brown . r2 - memory allocated in second chunk 8081795a4d1SJed Brown - r3 - memory allocated in third chunk 8091795a4d1SJed Brown 8101795a4d1SJed Brown Level: developer 8111795a4d1SJed Brown 8121795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8131795a4d1SJed Brown 8141795a4d1SJed Brown Concepts: memory allocation 8151795a4d1SJed Brown M*/ 816*ba282f50SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3)) 8171795a4d1SJed Brown 8181795a4d1SJed Brown /*MC 819dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 820d382aafbSBarry Smith 821d382aafbSBarry Smith Synopsis: 822aaa7dc30SBarry Smith #include <petscsys.h> 823dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 824d382aafbSBarry Smith 825d382aafbSBarry Smith Not Collective 826d382aafbSBarry Smith 827d382aafbSBarry Smith Input Parameter: 828d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 829d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 830d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 831dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 832d382aafbSBarry Smith 833d382aafbSBarry Smith Output Parameter: 834d382aafbSBarry Smith + r1 - memory allocated in first chunk 835d382aafbSBarry Smith . r2 - memory allocated in second chunk 836d382aafbSBarry Smith . r3 - memory allocated in third chunk 837d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 838d382aafbSBarry Smith 839d382aafbSBarry Smith Level: developer 840d382aafbSBarry Smith 8411795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 842d382aafbSBarry Smith 843d382aafbSBarry Smith Concepts: memory allocation 844d382aafbSBarry Smith 845d382aafbSBarry Smith M*/ 846*ba282f50SJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4)) 847d382aafbSBarry Smith 848d382aafbSBarry Smith /*MC 8491795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 850d382aafbSBarry Smith 851eca87e8dSBarry Smith Synopsis: 852aaa7dc30SBarry Smith #include <petscsys.h> 8531795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 854eca87e8dSBarry Smith 855eca87e8dSBarry Smith Not Collective 856eca87e8dSBarry Smith 857d382aafbSBarry Smith Input Parameter: 858d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 859d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 860d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8611795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8621795a4d1SJed Brown 8631795a4d1SJed Brown Output Parameter: 8641795a4d1SJed Brown + r1 - memory allocated in first chunk 8651795a4d1SJed Brown . r2 - memory allocated in second chunk 8661795a4d1SJed Brown . r3 - memory allocated in third chunk 8671795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8681795a4d1SJed Brown 8691795a4d1SJed Brown Level: developer 8701795a4d1SJed Brown 8711795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8721795a4d1SJed Brown 8731795a4d1SJed Brown Concepts: memory allocation 8741795a4d1SJed Brown 8751795a4d1SJed Brown M*/ 876*ba282f50SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4)) 8771795a4d1SJed Brown 8781795a4d1SJed Brown /*MC 879dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 880d382aafbSBarry Smith 881d382aafbSBarry Smith Synopsis: 882aaa7dc30SBarry Smith #include <petscsys.h> 883dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 884d382aafbSBarry Smith 885d382aafbSBarry Smith Not Collective 886d382aafbSBarry Smith 887d382aafbSBarry Smith Input Parameter: 888d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 889d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 890d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 891d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 892dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 893d382aafbSBarry Smith 894d382aafbSBarry Smith Output Parameter: 895d382aafbSBarry Smith + r1 - memory allocated in first chunk 896d382aafbSBarry Smith . r2 - memory allocated in second chunk 897d382aafbSBarry Smith . r3 - memory allocated in third chunk 898d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 899d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 900d382aafbSBarry Smith 901d382aafbSBarry Smith Level: developer 902d382aafbSBarry Smith 9031795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 904d382aafbSBarry Smith 905d382aafbSBarry Smith Concepts: memory allocation 906d382aafbSBarry Smith 907d382aafbSBarry Smith M*/ 908*ba282f50SJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4),(m5)*sizeof(**(r5)),(r5)) 909d382aafbSBarry Smith 910d382aafbSBarry Smith /*MC 9111795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 912d382aafbSBarry Smith 913eca87e8dSBarry Smith Synopsis: 914aaa7dc30SBarry Smith #include <petscsys.h> 9151795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 916eca87e8dSBarry Smith 917eca87e8dSBarry Smith Not Collective 918eca87e8dSBarry Smith 919d382aafbSBarry Smith Input Parameter: 920d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 921d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 922d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 923d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9241795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9251795a4d1SJed Brown 9261795a4d1SJed Brown Output Parameter: 9271795a4d1SJed Brown + r1 - memory allocated in first chunk 9281795a4d1SJed Brown . r2 - memory allocated in second chunk 9291795a4d1SJed Brown . r3 - memory allocated in third chunk 9301795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9311795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9321795a4d1SJed Brown 9331795a4d1SJed Brown Level: developer 9341795a4d1SJed Brown 9351795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9361795a4d1SJed Brown 9371795a4d1SJed Brown Concepts: memory allocation 9381795a4d1SJed Brown 9391795a4d1SJed Brown M*/ 940*ba282f50SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4),(m5)*sizeof(**(r5)),(r5)) 941d382aafbSBarry Smith 942d382aafbSBarry Smith /*MC 943dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 944d382aafbSBarry Smith 945d382aafbSBarry Smith Synopsis: 946aaa7dc30SBarry Smith #include <petscsys.h> 947dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 948d382aafbSBarry Smith 949d382aafbSBarry Smith Not Collective 950d382aafbSBarry Smith 951d382aafbSBarry Smith Input Parameter: 952d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 953d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 954d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 955d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 956d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 957dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 958d382aafbSBarry Smith 959d382aafbSBarry Smith Output Parameter: 960d382aafbSBarry Smith + r1 - memory allocated in first chunk 961d382aafbSBarry Smith . r2 - memory allocated in second chunk 962d382aafbSBarry Smith . r3 - memory allocated in third chunk 963d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 964d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 965d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 966d382aafbSBarry Smith 967d382aafbSBarry Smith Level: developer 968d382aafbSBarry Smith 9691795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 970d382aafbSBarry Smith 971d382aafbSBarry Smith Concepts: memory allocation 972d382aafbSBarry Smith 973d382aafbSBarry Smith M*/ 974*ba282f50SJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4),(m5)*sizeof(**(r5)),(r5),(m6)*sizeof(**(r6)),(r6)) 975d382aafbSBarry Smith 976d382aafbSBarry Smith /*MC 9771795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 978d382aafbSBarry Smith 979eca87e8dSBarry Smith Synopsis: 980aaa7dc30SBarry Smith #include <petscsys.h> 9811795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 982eca87e8dSBarry Smith 983eca87e8dSBarry Smith Not Collective 984eca87e8dSBarry Smith 985d382aafbSBarry Smith Input Parameter: 986d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 987d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 988d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 989d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 990d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9911795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9921795a4d1SJed Brown 9931795a4d1SJed Brown Output Parameter: 9941795a4d1SJed Brown + r1 - memory allocated in first chunk 9951795a4d1SJed Brown . r2 - memory allocated in second chunk 9961795a4d1SJed Brown . r3 - memory allocated in third chunk 9971795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9981795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9991795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10001795a4d1SJed Brown 10011795a4d1SJed Brown Level: developer 10021795a4d1SJed Brown 10031795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10041795a4d1SJed Brown 10051795a4d1SJed Brown Concepts: memory allocation 10061795a4d1SJed Brown M*/ 1007*ba282f50SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4),(m5)*sizeof(**(r5)),(r5),(m6)*sizeof(**(r6)),(r6)) 10081795a4d1SJed Brown 10091795a4d1SJed Brown /*MC 1010dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith Synopsis: 1013aaa7dc30SBarry Smith #include <petscsys.h> 1014dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1015d382aafbSBarry Smith 1016d382aafbSBarry Smith Not Collective 1017d382aafbSBarry Smith 1018d382aafbSBarry Smith Input Parameter: 1019d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1020d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1021d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1022d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1023d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1024d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1025dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1026d382aafbSBarry Smith 1027d382aafbSBarry Smith Output Parameter: 1028d382aafbSBarry Smith + r1 - memory allocated in first chunk 1029d382aafbSBarry Smith . r2 - memory allocated in second chunk 1030d382aafbSBarry Smith . r3 - memory allocated in third chunk 1031d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1032d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1033d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1034eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1035d382aafbSBarry Smith 1036d382aafbSBarry Smith Level: developer 1037d382aafbSBarry Smith 10381795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1039d382aafbSBarry Smith 1040d382aafbSBarry Smith Concepts: memory allocation 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith M*/ 1043*ba282f50SJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4),(m5)*sizeof(**(r5)),(r5),(m6)*sizeof(**(r6)),(r6),(m7)*sizeof(**(r7)),(r7)) 1044d382aafbSBarry Smith 1045d382aafbSBarry Smith /*MC 10461795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10471795a4d1SJed Brown 10481795a4d1SJed Brown Synopsis: 1049aaa7dc30SBarry Smith #include <petscsys.h> 10501795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10511795a4d1SJed Brown 10521795a4d1SJed Brown Not Collective 10531795a4d1SJed Brown 10541795a4d1SJed Brown Input Parameter: 10551795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10561795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10571795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10581795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10591795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10601795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10611795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10621795a4d1SJed Brown 10631795a4d1SJed Brown Output Parameter: 10641795a4d1SJed Brown + r1 - memory allocated in first chunk 10651795a4d1SJed Brown . r2 - memory allocated in second chunk 10661795a4d1SJed Brown . r3 - memory allocated in third chunk 10671795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10681795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10691795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10701795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10711795a4d1SJed Brown 10721795a4d1SJed Brown Level: developer 10731795a4d1SJed Brown 10741795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10751795a4d1SJed Brown 10761795a4d1SJed Brown Concepts: memory allocation 10771795a4d1SJed Brown M*/ 1078*ba282f50SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(m1)*sizeof(**(r1)),(r1),(m2)*sizeof(**(r2)),(r2),(m3)*sizeof(**(r3)),(r3),(m4)*sizeof(**(r4)),(r4),(m5)*sizeof(**(r5)),(r5),(m6)*sizeof(**(r6)),(r6),(m7)*sizeof(**(r7)),(r7)) 10791795a4d1SJed Brown 10801795a4d1SJed Brown /*MC 1081503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1082d382aafbSBarry Smith 1083eca87e8dSBarry Smith Synopsis: 1084aaa7dc30SBarry Smith #include <petscsys.h> 1085b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1086eca87e8dSBarry Smith 1087eca87e8dSBarry Smith Not Collective 1088eca87e8dSBarry Smith 1089d382aafbSBarry Smith Output Parameter: 1090b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1091d382aafbSBarry Smith 1092d382aafbSBarry Smith Level: beginner 1093d382aafbSBarry Smith 1094390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1095d382aafbSBarry Smith 1096d382aafbSBarry Smith Concepts: memory allocation 1097d382aafbSBarry Smith 1098d382aafbSBarry Smith M*/ 1099b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1100ad0619ddSBarry Smith 1101ad0619ddSBarry Smith /*MC 1102b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1103ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1104ad0619ddSBarry Smith 1105ad0619ddSBarry Smith Synopsis: 1106aaa7dc30SBarry Smith #include <petscsys.h> 1107b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1108ad0619ddSBarry Smith 1109ad0619ddSBarry Smith Not Collective 1110ad0619ddSBarry Smith 1111ad0619ddSBarry Smith Input Parameter: 1112b00a9115SJed Brown . obj - object memory is logged to 1113ad0619ddSBarry Smith 1114ad0619ddSBarry Smith Output Parameter: 1115b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1116ad0619ddSBarry Smith 1117ad0619ddSBarry Smith Level: developer 1118ad0619ddSBarry Smith 1119390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1120ad0619ddSBarry Smith 1121ad0619ddSBarry Smith Concepts: memory allocation 1122ad0619ddSBarry Smith 1123ad0619ddSBarry Smith M*/ 1124d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1125d382aafbSBarry Smith 1126d382aafbSBarry Smith /*MC 1127d382aafbSBarry Smith PetscFree - Frees memory 1128d382aafbSBarry Smith 1129eca87e8dSBarry Smith Synopsis: 1130aaa7dc30SBarry Smith #include <petscsys.h> 1131eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1132eca87e8dSBarry Smith 1133eca87e8dSBarry Smith Not Collective 1134eca87e8dSBarry Smith 1135d382aafbSBarry Smith Input Parameter: 1136390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1137d382aafbSBarry Smith 1138d382aafbSBarry Smith Level: beginner 1139d382aafbSBarry Smith 114049d7da52SJed Brown Notes: 1141390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1142390e1bf2SBarry Smith 114349d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1144d382aafbSBarry Smith 1145390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1146d382aafbSBarry Smith 1147d382aafbSBarry Smith Concepts: memory allocation 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith M*/ 115049d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1151d382aafbSBarry Smith 1152d382aafbSBarry Smith /*MC 1153d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1154d382aafbSBarry Smith 1155eca87e8dSBarry Smith Synopsis: 1156aaa7dc30SBarry Smith #include <petscsys.h> 1157eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1158eca87e8dSBarry Smith 1159eca87e8dSBarry Smith Not Collective 1160eca87e8dSBarry Smith 1161d382aafbSBarry Smith Input Parameter: 1162d382aafbSBarry Smith + memory1 - memory to free 1163d382aafbSBarry Smith - memory2 - 2nd memory to free 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith Level: developer 1166d382aafbSBarry Smith 1167d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1168d382aafbSBarry Smith 1169d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1170d382aafbSBarry Smith 1171d382aafbSBarry Smith Concepts: memory allocation 1172d382aafbSBarry Smith 1173d382aafbSBarry Smith M*/ 1174*ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1175d382aafbSBarry Smith 1176d382aafbSBarry Smith /*MC 1177d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1178d382aafbSBarry Smith 1179eca87e8dSBarry Smith Synopsis: 1180aaa7dc30SBarry Smith #include <petscsys.h> 1181eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1182eca87e8dSBarry Smith 1183eca87e8dSBarry Smith Not Collective 1184eca87e8dSBarry Smith 1185d382aafbSBarry Smith Input Parameter: 1186d382aafbSBarry Smith + memory1 - memory to free 1187d382aafbSBarry Smith . memory2 - 2nd memory to free 1188d382aafbSBarry Smith - memory3 - 3rd memory to free 1189d382aafbSBarry Smith 1190d382aafbSBarry Smith Level: developer 1191d382aafbSBarry Smith 1192d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1193d382aafbSBarry Smith 1194d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1195d382aafbSBarry Smith 1196d382aafbSBarry Smith Concepts: memory allocation 1197d382aafbSBarry Smith 1198d382aafbSBarry Smith M*/ 1199*ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith /*MC 1202d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1203d382aafbSBarry Smith 1204eca87e8dSBarry Smith Synopsis: 1205aaa7dc30SBarry Smith #include <petscsys.h> 1206eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1207eca87e8dSBarry Smith 1208eca87e8dSBarry Smith Not Collective 1209eca87e8dSBarry Smith 1210d382aafbSBarry Smith Input Parameter: 1211d382aafbSBarry Smith + m1 - memory to free 1212d382aafbSBarry Smith . m2 - 2nd memory to free 1213d382aafbSBarry Smith . m3 - 3rd memory to free 1214d382aafbSBarry Smith - m4 - 4th memory to free 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith Level: developer 1217d382aafbSBarry Smith 1218d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith Concepts: memory allocation 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith M*/ 1225*ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1226d382aafbSBarry Smith 1227d382aafbSBarry Smith /*MC 1228d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1229d382aafbSBarry Smith 1230eca87e8dSBarry Smith Synopsis: 1231aaa7dc30SBarry Smith #include <petscsys.h> 1232eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1233eca87e8dSBarry Smith 1234eca87e8dSBarry Smith Not Collective 1235eca87e8dSBarry Smith 1236d382aafbSBarry Smith Input Parameter: 1237d382aafbSBarry Smith + m1 - memory to free 1238d382aafbSBarry Smith . m2 - 2nd memory to free 1239d382aafbSBarry Smith . m3 - 3rd memory to free 1240d382aafbSBarry Smith . m4 - 4th memory to free 1241d382aafbSBarry Smith - m5 - 5th memory to free 1242d382aafbSBarry Smith 1243d382aafbSBarry Smith Level: developer 1244d382aafbSBarry Smith 1245d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1246d382aafbSBarry Smith 1247d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith Concepts: memory allocation 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith M*/ 1252*ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith /*MC 1255d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1256d382aafbSBarry Smith 1257eca87e8dSBarry Smith Synopsis: 1258aaa7dc30SBarry Smith #include <petscsys.h> 1259eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1260eca87e8dSBarry Smith 1261eca87e8dSBarry Smith Not Collective 1262eca87e8dSBarry Smith 1263d382aafbSBarry Smith Input Parameter: 1264d382aafbSBarry Smith + m1 - memory to free 1265d382aafbSBarry Smith . m2 - 2nd memory to free 1266d382aafbSBarry Smith . m3 - 3rd memory to free 1267d382aafbSBarry Smith . m4 - 4th memory to free 1268d382aafbSBarry Smith . m5 - 5th memory to free 1269d382aafbSBarry Smith - m6 - 6th memory to free 1270d382aafbSBarry Smith 1271d382aafbSBarry Smith 1272d382aafbSBarry Smith Level: developer 1273d382aafbSBarry Smith 1274d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1275d382aafbSBarry Smith 1276d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith Concepts: memory allocation 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith M*/ 1281*ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith /*MC 1284d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1285d382aafbSBarry Smith 1286eca87e8dSBarry Smith Synopsis: 1287aaa7dc30SBarry Smith #include <petscsys.h> 1288eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1289eca87e8dSBarry Smith 1290eca87e8dSBarry Smith Not Collective 1291eca87e8dSBarry Smith 1292d382aafbSBarry Smith Input Parameter: 1293d382aafbSBarry Smith + m1 - memory to free 1294d382aafbSBarry Smith . m2 - 2nd memory to free 1295d382aafbSBarry Smith . m3 - 3rd memory to free 1296d382aafbSBarry Smith . m4 - 4th memory to free 1297d382aafbSBarry Smith . m5 - 5th memory to free 1298d382aafbSBarry Smith . m6 - 6th memory to free 1299d382aafbSBarry Smith - m7 - 7th memory to free 1300d382aafbSBarry Smith 1301d382aafbSBarry Smith 1302d382aafbSBarry Smith Level: developer 1303d382aafbSBarry Smith 1304d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1305d382aafbSBarry Smith 1306d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1307d382aafbSBarry Smith PetscMalloc7() 1308d382aafbSBarry Smith 1309d382aafbSBarry Smith Concepts: memory allocation 1310d382aafbSBarry Smith 1311d382aafbSBarry Smith M*/ 1312*ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1313d382aafbSBarry Smith 1314*ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1315*ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1316efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1317efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13183221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1319*ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 1320efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1321014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith /* 1324c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1325c1706be6SHong Zhang */ 1326c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1327c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1328c1706be6SHong Zhang 1329c1706be6SHong Zhang /* 1330a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1331a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1332a5057860SBarry Smith timing etc. 1333a5057860SBarry Smith */ 1334a5057860SBarry Smith typedef double PetscLogDouble; 1335a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1336a5057860SBarry Smith 1337a5057860SBarry Smith /* 133866d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1339d382aafbSBarry Smith */ 1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13450acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1346efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1348574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1350d382aafbSBarry Smith 1351d382aafbSBarry Smith /*E 1352d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1353d382aafbSBarry Smith 1354d382aafbSBarry Smith Level: beginner 1355d382aafbSBarry Smith 1356d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1359d382aafbSBarry Smith PetscDataTypeGetSize() 1360d382aafbSBarry Smith 1361d382aafbSBarry Smith E*/ 1362d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1363570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 13646a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1365d382aafbSBarry Smith 1366d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1367d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1368d382aafbSBarry Smith #else 1369ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1370d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 137159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 137259a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1373570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1374570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1375d382aafbSBarry Smith #else 1376d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1377d382aafbSBarry Smith #endif 1378d382aafbSBarry Smith #endif 1379ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1380d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 138159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 138259a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1383570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1384570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1385d382aafbSBarry Smith #else 1386d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1387d382aafbSBarry Smith #endif 1388d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1389d382aafbSBarry Smith 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 13938e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1394d382aafbSBarry Smith 1395d382aafbSBarry Smith /* 1396d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1397d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1398d382aafbSBarry Smith functionality and/or error checking. 1399d382aafbSBarry Smith */ 1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1404d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14162f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14212c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 142447340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14256fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14266991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14276991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1429d382aafbSBarry Smith 1430573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1431573b0fb4SBarry Smith 1432d382aafbSBarry Smith /*S 1433d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1434d382aafbSBarry Smith 1435d382aafbSBarry Smith Level: intermediate 1436d382aafbSBarry Smith 1437d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1438d382aafbSBarry Smith S*/ 1439d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1440d382aafbSBarry Smith 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1444d382aafbSBarry Smith 1445a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1446a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1447a53986e1SJed Brown 1448d382aafbSBarry Smith /* 1449d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1450d382aafbSBarry Smith */ 1451367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1452570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1453014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14542414b3c7SJed Brown #else 14552414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14562414b3c7SJed Brown #endif 1457570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1458014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1459014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1460d9822059SBarry Smith #else 1461d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1462d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1463d9822059SBarry Smith #endif 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1465d382aafbSBarry Smith 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1468eb3f98d2SBarry Smith 1469d382aafbSBarry Smith /*S 1470d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1471d382aafbSBarry Smith 1472d382aafbSBarry Smith Level: beginner 1473d382aafbSBarry Smith 14742981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1475d382aafbSBarry Smith 14762b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1477d382aafbSBarry Smith S*/ 1478d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1479d382aafbSBarry Smith 1480270bf2e7SJed Brown /*MC 1481127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1482127c8a3bSJed Brown 1483127c8a3bSJed Brown Level: developer 1484127c8a3bSJed Brown 1485127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1486127c8a3bSJed Brown 1487127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1488127c8a3bSJed Brown M*/ 148906e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 149006e41213SSatish Balay typedef int PetscObjectId; 149106e41213SSatish Balay #else 1492bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 149306e41213SSatish Balay #endif 1494127c8a3bSJed Brown 1495127c8a3bSJed Brown /*MC 1496270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1497270bf2e7SJed Brown 1498270bf2e7SJed Brown Level: developer 1499270bf2e7SJed Brown 1500270bf2e7SJed Brown Notes: 1501270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1502270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1503270bf2e7SJed Brown 15048dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1505270bf2e7SJed Brown M*/ 150606e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 150706e41213SSatish Balay typedef int PetscObjectState; 150806e41213SSatish Balay #else 1509bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 151006e41213SSatish Balay #endif 1511270bf2e7SJed Brown 1512d382aafbSBarry Smith /*S 1513140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1514d382aafbSBarry Smith by string name 1515d382aafbSBarry Smith 1516d382aafbSBarry Smith Level: advanced 1517d382aafbSBarry Smith 1518140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1519d382aafbSBarry Smith S*/ 1520140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1521d382aafbSBarry Smith 1522d382aafbSBarry Smith /*E 1523d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1524d382aafbSBarry Smith 1525d382aafbSBarry Smith Level: beginner 1526d382aafbSBarry Smith 15271cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15281cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15291cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15301cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15311cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1532d382aafbSBarry Smith 1533d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1534d382aafbSBarry Smith E*/ 1535d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1536d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1537d6a4318aSJed Brown 1538639ff905SBarry Smith /* 1539639ff905SBarry Smith Defines PETSc error handling. 1540639ff905SBarry Smith */ 1541639ff905SBarry Smith #include <petscerror.h> 1542d382aafbSBarry Smith 15430700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1544014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1545014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1547d382aafbSBarry Smith 1548d382aafbSBarry Smith /* 1549d382aafbSBarry Smith Routines that get memory usage information from the OS 1550d382aafbSBarry Smith */ 1551014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1552014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1553014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1554b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1555d382aafbSBarry Smith 1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1558d382aafbSBarry Smith 1559d382aafbSBarry Smith /* 1560d382aafbSBarry Smith Initialization of PETSc 1561d382aafbSBarry Smith */ 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1572d382aafbSBarry Smith 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1574607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1575d382aafbSBarry Smith 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1580d382aafbSBarry Smith 1581d382aafbSBarry Smith /* 1582d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15832981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1584d382aafbSBarry Smith */ 1585638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1586638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1587638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1588d382aafbSBarry Smith 1589d382aafbSBarry Smith /* 1590d382aafbSBarry Smith Functions that can act on any PETSc object. 1591d382aafbSBarry Smith */ 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1610bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1611bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16140eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16150eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1617d382aafbSBarry Smith 1618665c2dedSJed Brown #include <petscviewertypes.h> 1619639ff905SBarry Smith #include <petscoptions.h> 1620639ff905SBarry Smith 16210633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16220633abcbSJed Brown 1623639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1624c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1625dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1626639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16270005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16280005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1636685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 16394099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1643d382aafbSBarry Smith 1644e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16457aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1646e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1647e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1648e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1649e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1650e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1651e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1652e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1653e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1654e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 165515681b3cSBarry Smith 1656ec7429eaSBarry Smith #else 16577aab2a10SBarry Smith #define PetscSAWsBlock() 0 1658e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1659e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1660e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1661e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1662e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1663e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1664e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1665e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1666e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 166715681b3cSBarry Smith 1668ec7429eaSBarry Smith #endif 1669b90c6cbeSBarry Smith 16707d5d4d99SBarry Smith typedef void* PetscDLHandle; 1671e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 167282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 167382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 167482b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16757d5d4d99SBarry Smith 16765fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1677a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16785fe58b6fSBarry Smith #endif 16797eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1680a64a8e02SBarry Smith 1681d382aafbSBarry Smith /*S 1682140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1683d382aafbSBarry Smith 16841d0fab5eSBarry Smith Level: developer 1685d382aafbSBarry Smith 16861d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16871d0fab5eSBarry Smith 1688140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1689d382aafbSBarry Smith S*/ 1690140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1691d382aafbSBarry Smith 1692140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1693140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1694140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1695140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1696140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1697140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1698d382aafbSBarry Smith 1699d382aafbSBarry Smith /* 1700503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1701d382aafbSBarry Smith link libraries that will be loaded as needed. 1702d382aafbSBarry Smith */ 1703a240a19fSJed Brown 1704a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1705a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1706140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17071c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17081c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1709140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1710140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1711140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1712140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1713d382aafbSBarry Smith 1714d382aafbSBarry Smith /*S 1715d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1716d382aafbSBarry Smith 1717d382aafbSBarry Smith Level: advanced 1718d382aafbSBarry Smith 1719d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1720d382aafbSBarry Smith S*/ 1721d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1722014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1723014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1724014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1725014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1726014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1727014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1728014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1729014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1730d382aafbSBarry Smith 1731d382aafbSBarry Smith /* 1732d382aafbSBarry Smith Useful utility routines 1733d382aafbSBarry Smith */ 1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1740d382aafbSBarry Smith 1741503cfb0cSBarry Smith /* 1742ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1743503cfb0cSBarry Smith 1744503cfb0cSBarry Smith Notes: This is useful in cases like 1745503cfb0cSBarry Smith $ int *a; 1746ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17471cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1748503cfb0cSBarry Smith */ 1749d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1750503cfb0cSBarry Smith 1751d382aafbSBarry Smith /*MC 1752d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1753d382aafbSBarry Smith 1754d382aafbSBarry Smith Synopsis: 1755aaa7dc30SBarry Smith #include <petscsys.h> 1756d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1757d382aafbSBarry Smith 1758eca87e8dSBarry Smith Not Collective 1759eca87e8dSBarry Smith 1760d382aafbSBarry Smith Input Parameters: 1761d382aafbSBarry Smith . format - the usual printf() format string 1762d382aafbSBarry Smith 1763d382aafbSBarry Smith Level: developer 1764d382aafbSBarry Smith 1765d382aafbSBarry Smith Fortran Note: 1766d382aafbSBarry Smith This routine is not supported in Fortran. 1767d382aafbSBarry Smith 1768d382aafbSBarry Smith Concepts: help messages^printing 1769d382aafbSBarry Smith Concepts: printing^help messages 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1772d382aafbSBarry Smith M*/ 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1774d382aafbSBarry Smith 1775fcfd50ebSBarry Smith /* 1776fcfd50ebSBarry Smith Defines PETSc profiling. 1777fcfd50ebSBarry Smith */ 17782c8e378dSBarry Smith #include <petsclog.h> 1779fcfd50ebSBarry Smith 1780fcfd50ebSBarry Smith /* 1781fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1782fcfd50ebSBarry Smith */ 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1790fcfd50ebSBarry Smith 1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1794d382aafbSBarry Smith 1795d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 179796a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 179874ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1799d382aafbSBarry Smith #endif 1800d382aafbSBarry Smith 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18030ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1805014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1808d382aafbSBarry Smith 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1810d382aafbSBarry Smith 1811d382aafbSBarry Smith /*S 1812d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith Level: advanced 1815d382aafbSBarry Smith 1816d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1817d382aafbSBarry Smith S*/ 1818014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1819d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1825d382aafbSBarry Smith 1826d382aafbSBarry Smith /* 1827d382aafbSBarry Smith For use in debuggers 1828d382aafbSBarry Smith */ 1829014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1830014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1834d382aafbSBarry Smith 1835a663daf8SBarry Smith #include <stddef.h> 1836a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1837d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1838d382aafbSBarry Smith #include <stdlib.h> 1839d382aafbSBarry Smith #endif 18406c7e564aSBarry Smith 18414a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1842d382aafbSBarry Smith #include <xmmintrin.h> 1843d382aafbSBarry Smith #endif 1844d382aafbSBarry Smith 1845d382aafbSBarry Smith /*@C 1846d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1847d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1848d382aafbSBarry Smith PetscMemmove() in that case. 1849d382aafbSBarry Smith 1850d382aafbSBarry Smith Not Collective 1851d382aafbSBarry Smith 1852d382aafbSBarry Smith Input Parameters: 1853d382aafbSBarry Smith + b - pointer to initial memory space 1854d382aafbSBarry Smith - n - length (in bytes) of space to copy 1855d382aafbSBarry Smith 1856d382aafbSBarry Smith Output Parameter: 1857d382aafbSBarry Smith . a - pointer to copy space 1858d382aafbSBarry Smith 1859d382aafbSBarry Smith Level: intermediate 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith Compile Option: 1862d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1863d382aafbSBarry Smith for memory copies on double precision values. 1864d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1865d382aafbSBarry Smith for memory copies on double precision values. 1866d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1867d382aafbSBarry Smith for memory copies on double precision values. 1868d382aafbSBarry Smith 1869d382aafbSBarry Smith Note: 1870d382aafbSBarry Smith This routine is analogous to memcpy(). 1871d382aafbSBarry Smith 1872503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1873503cfb0cSBarry Smith 1874d382aafbSBarry Smith Concepts: memory^copying 1875d382aafbSBarry Smith Concepts: copying^memory 1876d382aafbSBarry Smith 1877d382aafbSBarry Smith .seealso: PetscMemmove() 1878d382aafbSBarry Smith 1879d382aafbSBarry Smith @*/ 18807087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1881d382aafbSBarry Smith { 1882d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1883c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1884c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1885a7e36092SMatthew G Knepley PetscFunctionBegin; 1886e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1887e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1888a7e36092SMatthew G Knepley #else 1889d382aafbSBarry Smith PetscFunctionBegin; 1890a7e36092SMatthew G Knepley #endif 1891a47a537aSLisandro Dalcin if (a != b && n > 0) { 1892d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1893e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1894d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1895d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1896d382aafbSBarry Smith #endif 1897d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1898c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1899d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1900d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1901c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1902c5df96a5SBarry Smith PetscErrorCode ierr; 1903c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19048b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1905d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1906d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1907d382aafbSBarry Smith #else 1908d382aafbSBarry Smith size_t i; 1909d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1910d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1911d382aafbSBarry Smith #endif 1912d382aafbSBarry Smith } else { 1913d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1914d382aafbSBarry Smith } 1915d382aafbSBarry Smith #else 1916d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1917d382aafbSBarry Smith #endif 1918d382aafbSBarry Smith } 1919d382aafbSBarry Smith PetscFunctionReturn(0); 1920d382aafbSBarry Smith } 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith /*@C 1923d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1924d382aafbSBarry Smith 1925d382aafbSBarry Smith Not Collective 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith Input Parameters: 1928d382aafbSBarry Smith + a - pointer to beginning memory location 1929d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith Level: intermediate 1932d382aafbSBarry Smith 1933d382aafbSBarry Smith Compile Option: 1934d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1935d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1936d382aafbSBarry Smith 1937503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1938503cfb0cSBarry Smith 1939d382aafbSBarry Smith Concepts: memory^zeroing 1940d382aafbSBarry Smith Concepts: zeroing^memory 1941d382aafbSBarry Smith 1942d382aafbSBarry Smith .seealso: PetscMemcpy() 1943d382aafbSBarry Smith @*/ 19447087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1945d382aafbSBarry Smith { 1946d382aafbSBarry Smith if (n > 0) { 1947d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1948e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1951d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1952d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1953d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1954d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1955d382aafbSBarry Smith } else { 1956d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1957d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1958d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1959d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1960d382aafbSBarry Smith } else { 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1963d382aafbSBarry Smith bzero((char *)a,n); 1964d382aafbSBarry Smith #else 1965d382aafbSBarry Smith memset((char*)a,0,n); 1966d382aafbSBarry Smith #endif 1967d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1968d382aafbSBarry Smith } 1969d382aafbSBarry Smith #endif 1970d382aafbSBarry Smith } 1971d382aafbSBarry Smith return 0; 1972d382aafbSBarry Smith } 1973d382aafbSBarry Smith 1974d382aafbSBarry Smith /*MC 1975d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1976d382aafbSBarry Smith 1977eca87e8dSBarry Smith Synopsis: 1978aaa7dc30SBarry Smith #include <petscsys.h> 1979eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1980eca87e8dSBarry Smith 1981d382aafbSBarry Smith Not Collective 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith Input Parameters: 1984d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1985d382aafbSBarry Smith . n - number of elements to fetch 1986d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 198750d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith Level: developer 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith Notes: 1992d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1993d382aafbSBarry Smith 199450d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 199550d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 199650d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 199763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 199863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 199963cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2000d382aafbSBarry Smith 2001d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2002d382aafbSBarry Smith address). 2003d382aafbSBarry Smith 2004d382aafbSBarry Smith Concepts: memory 2005d382aafbSBarry Smith M*/ 2006d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2007d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2008d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2009d382aafbSBarry Smith } while (0) 2010d382aafbSBarry Smith 2011d382aafbSBarry Smith /* 2012d382aafbSBarry Smith Determine if some of the kernel computation routines use 2013d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2014d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2015d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2016e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2017d382aafbSBarry Smith */ 2018d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2021d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2022d382aafbSBarry Smith #endif 2023d382aafbSBarry Smith 20245a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20255a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2026d382aafbSBarry Smith #endif 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2029d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2030d382aafbSBarry Smith #endif 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2033d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2034d382aafbSBarry Smith #endif 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2037d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2038d382aafbSBarry Smith #endif 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2041d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2042d382aafbSBarry Smith #endif 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2045d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2046d382aafbSBarry Smith #endif 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2049d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2050d382aafbSBarry Smith #endif 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2053d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2057d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2058d382aafbSBarry Smith #endif 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2061d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2062d382aafbSBarry Smith #endif 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2065d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2066d382aafbSBarry Smith #endif 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2069d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2070d382aafbSBarry Smith #endif 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2073d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2074d382aafbSBarry Smith #endif 2075d382aafbSBarry Smith 2076d382aafbSBarry Smith #endif 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith /* 2079d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2080d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2081d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2082d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2083d382aafbSBarry Smith ugly extern "C" {} wrappers. 2084d382aafbSBarry Smith */ 2085d382aafbSBarry Smith #if defined(__cplusplus) 2086d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2087d382aafbSBarry Smith #define EXTERN_C_END } 2088d382aafbSBarry Smith #else 2089d382aafbSBarry Smith #define EXTERN_C_BEGIN 2090d382aafbSBarry Smith #define EXTERN_C_END 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2094d382aafbSBarry Smith 2095d382aafbSBarry Smith /*MC 2096d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2097d382aafbSBarry Smith communication 2098d382aafbSBarry Smith 2099d382aafbSBarry Smith Level: beginner 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2102d382aafbSBarry Smith 2103d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2104d382aafbSBarry Smith M*/ 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith /*MC 2107d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2108390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2109390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2110390e1bf2SBarry Smith 2111390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2112390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscScalar 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith Level: beginner 2115d382aafbSBarry Smith 2116390e1bf2SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL, PetscComplex, MPIU_INT 2117d382aafbSBarry Smith M*/ 2118d382aafbSBarry Smith 2119d382aafbSBarry Smith /*MC 21208619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21218619c96cSJed Brown 21228619c96cSJed Brown Synopsis: 21238619c96cSJed Brown #include <petscsys.h> 21248619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21258619c96cSJed Brown 21268619c96cSJed Brown Level: beginner 21278619c96cSJed Brown 2128390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2129390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscComplex 2130390e1bf2SBarry Smith 2131390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2132390e1bf2SBarry Smith 21338cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21348619c96cSJed Brown 21358619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21368619c96cSJed Brown M*/ 21378619c96cSJed Brown 21388619c96cSJed Brown /*MC 2139d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2140d382aafbSBarry Smith 2141d382aafbSBarry Smith Level: beginner 2142d382aafbSBarry Smith 2143390e1bf2SBarry Smith Notes: For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. 2144390e1bf2SBarry Smith They will automatically work correctly regardless of the size of PetscReal 2145390e1bf2SBarry Smith 2146390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2147390e1bf2SBarry Smith 2148390e1bf2SBarry Smith .seealso: PetscScalar, PetscComplex, MPIU_REAL, MPIU_SCALAR 2149d382aafbSBarry Smith M*/ 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith /*MC 2152d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith Level: beginner 2155d382aafbSBarry Smith 2156d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2157d382aafbSBarry Smith pass this value 2158d382aafbSBarry Smith 2159390e1bf2SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT, MPIU_REAL, MPIU_COMPLEX 2160d382aafbSBarry Smith M*/ 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2163d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2164014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2165014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2166d382aafbSBarry Smith #else 2167d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2168d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2169d382aafbSBarry Smith #endif 2170d382aafbSBarry Smith #endif 2171d382aafbSBarry Smith 2172d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2173d382aafbSBarry Smith 2174d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2175d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2176d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2177d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2178d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2179d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2180d382aafbSBarry Smith 218161b0d812SBarry Smith /*@C 218261b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 218361b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 218461b0d812SBarry Smith 218561b0d812SBarry Smith Not Collective 218661b0d812SBarry Smith 218761b0d812SBarry Smith Input Parameter: 218861b0d812SBarry Smith . a - the PetscInt value 218961b0d812SBarry Smith 219061b0d812SBarry Smith Output Parameter: 219161b0d812SBarry Smith . b - the resulting PetscBLASInt value 219261b0d812SBarry Smith 219361b0d812SBarry Smith Level: advanced 219461b0d812SBarry Smith 219561b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 219661b0d812SBarry Smith @*/ 2197c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2198c5df96a5SBarry Smith { 2199c5df96a5SBarry Smith PetscFunctionBegin; 2200ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2201c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2202c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2203c5df96a5SBarry Smith #endif 2204c5df96a5SBarry Smith PetscFunctionReturn(0); 2205c5df96a5SBarry Smith } 2206c5df96a5SBarry Smith 220761b0d812SBarry Smith /*@C 220861b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 220961b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 221061b0d812SBarry Smith 221161b0d812SBarry Smith Not Collective 221261b0d812SBarry Smith 221361b0d812SBarry Smith Input Parameter: 221461b0d812SBarry Smith . a - the PetscInt value 221561b0d812SBarry Smith 221661b0d812SBarry Smith Output Parameter: 221761b0d812SBarry Smith . b - the resulting PetscMPIInt value 221861b0d812SBarry Smith 221961b0d812SBarry Smith Level: advanced 222061b0d812SBarry Smith 222161b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 222261b0d812SBarry Smith @*/ 22234dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22244dc2109aSBarry Smith { 22254dc2109aSBarry Smith PetscFunctionBegin; 2226ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22274dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22284dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22294dc2109aSBarry Smith #endif 22304dc2109aSBarry Smith PetscFunctionReturn(0); 22314dc2109aSBarry Smith } 22324dc2109aSBarry Smith 2233bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 22342f18eb33SBarry Smith 22352f18eb33SBarry Smith /*@C 22362f18eb33SBarry Smith 22372f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22382f18eb33SBarry Smith 22392f18eb33SBarry Smith Not Collective 22402f18eb33SBarry Smith 22412f18eb33SBarry Smith Input Parameter: 22422f18eb33SBarry Smith + a - the PetscReal value 22432f18eb33SBarry Smith - b - the second value 22442f18eb33SBarry Smith 2245390e1bf2SBarry Smith Returns: 2246390e1bf2SBarry Smith the result as a PetscInt value 22472f18eb33SBarry Smith 2248bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 22492f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 22502f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22512f18eb33SBarry Smith 22522f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 22532f18eb33SBarry Smith 22542f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 22552f18eb33SBarry Smith 22562f18eb33SBarry Smith Level: advanced 22572f18eb33SBarry Smith 2258390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 22592f18eb33SBarry Smith @*/ 22602f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 22612f18eb33SBarry Smith { 2262bafee8b4SSatish Balay PetscInt64 r; 22632f18eb33SBarry Smith 2264bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 22652f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 22662f18eb33SBarry Smith return (PetscInt) r; 22672f18eb33SBarry Smith } 22682f18eb33SBarry Smith 22692f18eb33SBarry Smith /*@C 22702f18eb33SBarry Smith 22712f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 22722f18eb33SBarry Smith 22732f18eb33SBarry Smith Not Collective 22742f18eb33SBarry Smith 22752f18eb33SBarry Smith Input Parameter: 22762f18eb33SBarry Smith + a - the PetscInt value 22772f18eb33SBarry Smith - b - the second value 22782f18eb33SBarry Smith 2279390e1bf2SBarry Smith Returns: 2280390e1bf2SBarry Smith the result as a PetscInt value 22812f18eb33SBarry Smith 2282bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 22832f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 22842f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 22852f18eb33SBarry Smith 22862f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 22872f18eb33SBarry Smith 22882f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 22892f18eb33SBarry Smith 22902f18eb33SBarry Smith Level: advanced 22912f18eb33SBarry Smith 2292390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 22932f18eb33SBarry Smith @*/ 22942f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 22952f18eb33SBarry Smith { 2296bafee8b4SSatish Balay PetscInt64 r; 22972f18eb33SBarry Smith 2298bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 22992f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23002f18eb33SBarry Smith return (PetscInt) r; 23012f18eb33SBarry Smith } 23022f18eb33SBarry Smith 2303f91af8c7SBarry Smith /*@C 2304f91af8c7SBarry Smith 2305f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2306f91af8c7SBarry Smith 2307f91af8c7SBarry Smith Not Collective 2308f91af8c7SBarry Smith 2309f91af8c7SBarry Smith Input Parameter: 2310f91af8c7SBarry Smith + a - the PetscInt value 2311f91af8c7SBarry Smith - b - the second value 2312f91af8c7SBarry Smith 2313390e1bf2SBarry Smith Returns: 2314390e1bf2SBarry Smith the result as a PetscInt value 2315f91af8c7SBarry Smith 2316bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2317f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2318f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2319f91af8c7SBarry Smith 2320f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2321f91af8c7SBarry Smith 2322f91af8c7SBarry Smith Level: advanced 2323f91af8c7SBarry Smith 2324390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2325f91af8c7SBarry Smith @*/ 2326f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2327f91af8c7SBarry Smith { 2328bafee8b4SSatish Balay PetscInt64 r; 2329f91af8c7SBarry Smith 2330bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2331f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2332f91af8c7SBarry Smith return (PetscInt) r; 2333f91af8c7SBarry Smith } 2334f91af8c7SBarry Smith 23352f18eb33SBarry Smith /*@C 23362f18eb33SBarry Smith 23372f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23382f18eb33SBarry Smith 23392f18eb33SBarry Smith Not Collective 23402f18eb33SBarry Smith 23412f18eb33SBarry Smith Input Parameter: 23422f18eb33SBarry Smith + a - the PetscInt value 23432f18eb33SBarry Smith - b - the second value 23442f18eb33SBarry Smith 23452f18eb33SBarry Smith Output Parameter:ma 2346390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 23472f18eb33SBarry Smith 2348bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 23492f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 23502f18eb33SBarry Smith 2351220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 23522f18eb33SBarry Smith 23532f18eb33SBarry Smith Level: advanced 23542f18eb33SBarry Smith 2355220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 23562f18eb33SBarry Smith @*/ 23572f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 23582f18eb33SBarry Smith { 2359bafee8b4SSatish Balay PetscInt64 r; 23602f18eb33SBarry Smith 23612f18eb33SBarry Smith PetscFunctionBegin; 2362bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23632f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 23642f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 23652f18eb33SBarry Smith #endif 2366f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2367f91af8c7SBarry Smith PetscFunctionReturn(0); 2368f91af8c7SBarry Smith } 2369f91af8c7SBarry Smith 2370f91af8c7SBarry Smith /*@C 2371f91af8c7SBarry Smith 2372fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2373f91af8c7SBarry Smith 2374f91af8c7SBarry Smith Not Collective 2375f91af8c7SBarry Smith 2376f91af8c7SBarry Smith Input Parameter: 2377f91af8c7SBarry Smith + a - the PetscInt value 2378f91af8c7SBarry Smith - b - the second value 2379f91af8c7SBarry Smith 2380f91af8c7SBarry Smith Output Parameter:ma 2381390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2382f91af8c7SBarry Smith 2383bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2384f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2385f91af8c7SBarry Smith 2386f91af8c7SBarry Smith Level: advanced 2387f91af8c7SBarry Smith 2388390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2389f91af8c7SBarry Smith @*/ 2390f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2391f91af8c7SBarry Smith { 2392bafee8b4SSatish Balay PetscInt64 r; 2393f91af8c7SBarry Smith 2394f91af8c7SBarry Smith PetscFunctionBegin; 2395bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2396f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2397f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2398f91af8c7SBarry Smith #endif 2399f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24002f18eb33SBarry Smith PetscFunctionReturn(0); 24012f18eb33SBarry Smith } 2402c5df96a5SBarry Smith 2403d382aafbSBarry Smith /* 24042981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2405d382aafbSBarry Smith */ 2406d382aafbSBarry Smith #if defined(hz) 2407d382aafbSBarry Smith #undef hz 2408d382aafbSBarry Smith #endif 2409d382aafbSBarry Smith 2410d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2411d382aafbSBarry Smith 2412d382aafbSBarry Smith 2413d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2414d382aafbSBarry Smith #include <limits.h> 2415d382aafbSBarry Smith #endif 2416d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2417d382aafbSBarry Smith #include <sys/param.h> 2418d382aafbSBarry Smith #endif 2419d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2420d382aafbSBarry Smith #include <sys/types.h> 2421d382aafbSBarry Smith #endif 2422d382aafbSBarry Smith #if defined(MAXPATHLEN) 2423d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2424d382aafbSBarry Smith #elif defined(MAX_PATH) 2425d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2426d382aafbSBarry Smith #elif defined(_MAX_PATH) 2427d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2428d382aafbSBarry Smith #else 2429d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2430d382aafbSBarry Smith #endif 2431d382aafbSBarry Smith 2432d382aafbSBarry Smith /*MC 2433d382aafbSBarry Smith 243466d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 243566d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 243666d79e26SBarry Smith 243766d79e26SBarry Smith 243866d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 243966d79e26SBarry Smith 244066d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 244166d79e26SBarry Smith 244266d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 244366d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 244466d79e26SBarry Smith 244566d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 244666d79e26SBarry Smith 244766d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 244866d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 244966d79e26SBarry Smith version number (x.y.z). 245066d79e26SBarry Smith 245166d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 245266d79e26SBarry Smith 245366d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 245466d79e26SBarry Smith 245566d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 245666d79e26SBarry Smith 245766d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 245866d79e26SBarry Smith 245966d79e26SBarry Smith Level: intermediate 246066d79e26SBarry Smith 246166d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 246266d79e26SBarry Smith 246366d79e26SBarry Smith M*/ 246466d79e26SBarry Smith 246566d79e26SBarry Smith /*MC 246666d79e26SBarry Smith 24671b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 24681b266c99SBarry Smith of every function and module definition you need something like 2469d382aafbSBarry Smith 2470d382aafbSBarry Smith $ 2471af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 24720f665fc7SPatrick Sanan $ use petscXXX 24731b266c99SBarry Smith 2474692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 24751b266c99SBarry Smith 2476d382aafbSBarry Smith $ XXX variablename 24771b266c99SBarry Smith $ type(tXXX) variablename 24781b266c99SBarry Smith 2479692afcd8SPatrick Sanan For example, 24801b266c99SBarry Smith 2481bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 24821b266c99SBarry Smith $ use petscvec 2483d382aafbSBarry Smith $ 2484692afcd8SPatrick Sanan $ Vec b 2485692afcd8SPatrick Sanan $ type(tVec) x 2486d382aafbSBarry Smith 2487d382aafbSBarry Smith Level: beginner 2488d382aafbSBarry Smith 2489d382aafbSBarry Smith M*/ 2490d382aafbSBarry Smith 2491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 249727710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 24985f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2499d382aafbSBarry Smith 2500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 250260e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2503d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2506014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25076c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 250817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 250917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2510014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2511014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 251217df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2513014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2514014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2515745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2516014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 25196c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 25206c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2521e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2522d382aafbSBarry Smith 2523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2524014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2525d382aafbSBarry Smith 252676bdecfbSBarry Smith /*J 2527d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2528d382aafbSBarry Smith 2529d382aafbSBarry Smith Level: beginner 2530d382aafbSBarry Smith 2531e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2532d382aafbSBarry Smith with the option --download-sprng 2533d382aafbSBarry Smith 25348f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 253576bdecfbSBarry Smith J*/ 253619fd82e9SBarry Smith typedef const char* PetscRandomType; 2537d382aafbSBarry Smith #define PETSCRAND "rand" 2538d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2539d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2540c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2541d382aafbSBarry Smith 2542d382aafbSBarry Smith /* Logging support */ 2543014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2544d382aafbSBarry Smith 2545607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2546d382aafbSBarry Smith 2547d382aafbSBarry Smith /*S 2548d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2549d382aafbSBarry Smith 2550d382aafbSBarry Smith Level: intermediate 2551d382aafbSBarry Smith 2552d382aafbSBarry Smith Concepts: random numbers 2553d382aafbSBarry Smith 2554d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2555d382aafbSBarry Smith S*/ 2556d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2557d382aafbSBarry Smith 2558d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2559140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2560d382aafbSBarry Smith 2561bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 256219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 256419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2565685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2567d382aafbSBarry Smith 2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2572014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2577d382aafbSBarry Smith 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 258597540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 258697540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2587d382aafbSBarry Smith 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2599c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2600e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2601c891a504SStefano Zampini #endif 2602d382aafbSBarry Smith 2603d382aafbSBarry Smith /* 2604d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2605d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2606d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2607d382aafbSBarry Smith PetscBinarySeek(). 2608d382aafbSBarry Smith */ 2609d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2610d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2611d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2612d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2613d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2614d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2615d382aafbSBarry Smith 2616d382aafbSBarry Smith /*E 2617d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2618d382aafbSBarry Smith 2619d382aafbSBarry Smith Level: advanced 2620d382aafbSBarry Smith 2621d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2622d382aafbSBarry Smith E*/ 2623d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2627d382aafbSBarry Smith 2628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2634d382aafbSBarry Smith 2635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2640cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2641cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2642d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2643d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2644d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2645d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 26466afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 26476afbe7ddSJed Brown MPI_Request**,MPI_Request**, 26486afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 26496afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 26506afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2651d382aafbSBarry Smith 26526145cd65SJed Brown /*E 26536145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 26546145cd65SJed Brown 26556145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 26566145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 26576145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 26586145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 26596145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 26601654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 26611654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 26626145cd65SJed Brown 26636145cd65SJed Brown Level: developer 26646145cd65SJed Brown 26656145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 26666145cd65SJed Brown E*/ 26676145cd65SJed Brown typedef enum { 26686145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 26696145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 26701654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 267112af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 26726145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 26736145cd65SJed Brown } PetscBuildTwoSidedType; 26746145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 26756145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 26766145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 26776145cd65SJed Brown 2678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2679d382aafbSBarry Smith 2680d382aafbSBarry Smith /*E 2681d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2682d382aafbSBarry Smith 2683d382aafbSBarry Smith Level: beginner 2684d382aafbSBarry Smith 2685d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2686d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2687d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2688d382aafbSBarry Smith E*/ 26896fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2690d382aafbSBarry Smith 2691d382aafbSBarry Smith /*MC 2692d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2693d382aafbSBarry Smith 2694d382aafbSBarry Smith Level: beginner 2695d382aafbSBarry Smith 2696d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2697eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2698eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2699d382aafbSBarry Smith 2700d382aafbSBarry Smith M*/ 2701d382aafbSBarry Smith 2702d382aafbSBarry Smith /*MC 2703d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2704d382aafbSBarry Smith value into that location 2705d382aafbSBarry Smith 2706d382aafbSBarry Smith Level: beginner 2707d382aafbSBarry Smith 2708d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2709eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2710eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2711d382aafbSBarry Smith 2712d382aafbSBarry Smith M*/ 2713d382aafbSBarry Smith 2714d382aafbSBarry Smith /*MC 2715d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2716d382aafbSBarry Smith 2717d382aafbSBarry Smith Level: beginner 2718d382aafbSBarry Smith 2719d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2720d382aafbSBarry Smith 2721d382aafbSBarry Smith M*/ 2722d382aafbSBarry Smith 2723ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2724ce94432eSBarry Smith 272545487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 272645487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 272745487dadSJed Brown 2728d382aafbSBarry Smith /*S 2729306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2730306c2d5bSBarry Smith 2731306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2732306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 27333bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2734306c2d5bSBarry Smith 2735306c2d5bSBarry Smith Sample Usage: 2736306c2d5bSBarry Smith PetscSubcommCreate() 2737306c2d5bSBarry Smith PetscSubcommSetNumber() 2738306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2739306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2740306c2d5bSBarry Smith PetscSubcommDestroy() 2741d382aafbSBarry Smith 2742d382aafbSBarry Smith Level: advanced 2743d382aafbSBarry Smith 2744d382aafbSBarry Smith Concepts: communicator, create 2745306c2d5bSBarry Smith 2746306c2d5bSBarry Smith Notes: 2747306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 27483bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2749306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2750306c2d5bSBarry Smith 2751306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2752306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2753306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2754306c2d5bSBarry Smith 2755306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2756306c2d5bSBarry Smith are performed. 2757306c2d5bSBarry Smith 2758306c2d5bSBarry Smith 2759306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2760306c2d5bSBarry Smith 2761d382aafbSBarry Smith S*/ 2762d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2763d382aafbSBarry Smith 2764d382aafbSBarry Smith struct _n_PetscSubcomm { 2765d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2766d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2767306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 276845487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 276945487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2770708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 277145487dadSJed Brown PetscSubcommType type; 2772e5acf8a4SHong Zhang char *subcommprefix; 2773d382aafbSBarry Smith }; 2774d382aafbSBarry Smith 2775c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2776306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 277736be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2778014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 278265d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2783053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2784f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2785e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2786d382aafbSBarry Smith 27870f453b92SJed Brown /*S 27889962606eSBarry Smith PetscHeap - A simple class for managing heaps 27899962606eSBarry Smith 27909962606eSBarry Smith Level: intermediate 27919962606eSBarry Smith 27929962606eSBarry Smith Concepts: random numbers 27939962606eSBarry Smith 27949962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 27959962606eSBarry Smith S*/ 27969962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 27979962606eSBarry Smith 27989962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 27999962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 28009962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 28019962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 28029962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 28039962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 28049962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 28059962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 28069962606eSBarry Smith 28079962606eSBarry Smith /*S 28080f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28090f453b92SJed Brown 28100f453b92SJed Brown Level: developer 28110f453b92SJed Brown 28120f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28130f453b92SJed Brown S*/ 28140f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 281513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28160f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 281713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2818137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2819137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2820137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 282113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 282213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28230f453b92SJed Brown 2824471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2825471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2826471ecdacSJed Brown * possible. */ 282735005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2828d382aafbSBarry Smith 28299de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 28309de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 28319de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 28329de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 28339de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 28349de0f6ecSBarry Smith 2835268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2836fbfcfee5SBarry Smith 28371f817a21SBarry Smith /*@C 28381f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28391f817a21SBarry Smith 28401f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28411f817a21SBarry Smith 28421f817a21SBarry Smith Input Parameters: 28431f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28441f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28451f817a21SBarry Smith 2846850545d0SSatish Balay Level: intermediate 2847850545d0SSatish Balay 28481f817a21SBarry Smith Options Database: 2849063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 28501f817a21SBarry Smith @*/ 2851dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2852dff31646SBarry Smith { 2853dff31646SBarry Smith size_t len; 2854dff31646SBarry Smith char *vstring; 2855dff31646SBarry Smith PetscErrorCode ierr; 2856dff31646SBarry Smith 28571f817a21SBarry Smith PetscFunctionBegin; 28588d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2859dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 286035005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2861dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2862dff31646SBarry Smith if (set) *set = PETSC_TRUE; 28631f817a21SBarry Smith PetscFunctionReturn(0); 2864dff31646SBarry Smith } 2865dff31646SBarry Smith 2866b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2867fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2868fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2869f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2870fe278a28SBarry Smith 2871f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2872f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2873b967cddfSBarry Smith 287404102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2875763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2876dff31646SBarry Smith 287768e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 28785dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2879d382aafbSBarry Smith 2880b2566f29SBarry Smith 2881b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2882b2566f29SBarry Smith /* 2883b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2884b2566f29SBarry Smith */ 28858f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 288677a5e07dSBarry Smith 288777a5e07dSBarry Smith /*MC 288877a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 288977a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 289077a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 289177a5e07dSBarry Smith 289277a5e07dSBarry Smith Collective on MPI_Comm 289377a5e07dSBarry Smith 289477a5e07dSBarry Smith Synopsis: 289577a5e07dSBarry Smith #include <petscsys.h> 289677a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 289777a5e07dSBarry Smith 289877a5e07dSBarry Smith Input Parameters: 289977a5e07dSBarry Smith + indata - pointer to the input data to be reduced 290077a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 290177a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 290277a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 290377a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 290477a5e07dSBarry Smith 290577a5e07dSBarry Smith Output Parameter: 290677a5e07dSBarry Smith . outdata - the reduced values 290777a5e07dSBarry Smith 290877a5e07dSBarry Smith Notes: In optimized mode this directly calls MPI_Allreduce() 290977a5e07dSBarry Smith 291077a5e07dSBarry Smith Level: developer 291177a5e07dSBarry Smith 291277a5e07dSBarry Smith .seealso: MPI_Allreduce() 291377a5e07dSBarry Smith M*/ 2914fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2915b2566f29SBarry Smith #else 2916b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2917b2566f29SBarry Smith #endif 2918b2566f29SBarry Smith 2919d382aafbSBarry Smith #endif 2920