1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352981ebdbSBarry Smith This facilitates using the C version of PETSc from C++ and the 36e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 37d382aafbSBarry Smith */ 38d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 39d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 40d382aafbSBarry Smith #endif 411ec50b02SJed Brown 421ec50b02SJed Brown #if defined(__cplusplus) 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 441ec50b02SJed Brown #else 451ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 461ec50b02SJed Brown #endif 47d382aafbSBarry Smith 48ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 49014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 50014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 51014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 52014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 53014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 54d382aafbSBarry Smith #else 55014dd563SJed Brown # define PETSC_DLLEXPORT 56014dd563SJed Brown # define PETSC_DLLIMPORT 57014dd563SJed Brown #endif 58014dd563SJed Brown 59014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 60014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 61014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 62014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 63014dd563SJed Brown #endif 64014dd563SJed Brown 65014dd563SJed Brown #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 66014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 67638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 68014dd563SJed Brown #else 69014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 70638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 71d382aafbSBarry Smith #endif 7227710113SBarry Smith 732c8e378dSBarry Smith #include <petscversion.h> 74301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 75d382aafbSBarry Smith 76d382aafbSBarry Smith /* ========================================================================== */ 77d382aafbSBarry Smith 78d382aafbSBarry Smith /* 79d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 80d382aafbSBarry Smith 81d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 82d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 83d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 84d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 85d382aafbSBarry Smith mpicxx.h directly in their code 86d382aafbSBarry Smith */ 87d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 88d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 892c8e378dSBarry Smith #include <mpi.h> 9065013866SBarry Smith 91d382aafbSBarry Smith /* 922981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 93d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 94d382aafbSBarry Smith */ 95d382aafbSBarry Smith #include <stdio.h> 96d382aafbSBarry Smith 97d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 98d382aafbSBarry Smith #if !defined(MPIAPI) 99d382aafbSBarry Smith #define MPIAPI 100d382aafbSBarry Smith #endif 101d382aafbSBarry Smith 102b3506946SBarry Smith 103d382aafbSBarry Smith /*MC 104d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 105d382aafbSBarry Smith 106d382aafbSBarry Smith Level: beginner 107d382aafbSBarry Smith 108d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 109d382aafbSBarry Smith M*/ 110d382aafbSBarry Smith typedef int PetscErrorCode; 111d382aafbSBarry Smith 112d382aafbSBarry Smith /*MC 113d382aafbSBarry Smith 114503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 115d382aafbSBarry Smith (internal integer in the data structure used for error 1162981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1170700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 118d382aafbSBarry Smith 119d382aafbSBarry Smith Level: advanced 120d382aafbSBarry Smith 1210700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 122d382aafbSBarry Smith M*/ 1230700a824SBarry Smith typedef int PetscClassId; 124d382aafbSBarry Smith 125d382aafbSBarry Smith 126d382aafbSBarry Smith /*MC 127d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 128d382aafbSBarry Smith 129d382aafbSBarry Smith Level: intermediate 130d382aafbSBarry Smith 131d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1323b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 133d382aafbSBarry Smith 1343b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 1352981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 136d382aafbSBarry Smith 1373b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1382981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 139d382aafbSBarry Smith 140d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 141d382aafbSBarry Smith 142d382aafbSBarry Smith M*/ 143d382aafbSBarry Smith typedef int PetscMPIInt; 144d382aafbSBarry Smith 145d382aafbSBarry Smith /*MC 146d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 147d382aafbSBarry Smith 148d382aafbSBarry Smith Level: intermediate 149d382aafbSBarry Smith 150d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 151d382aafbSBarry Smith M*/ 152d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 153*c3aae356SJed Brown extern MPI_Datatype MPIU_ENUM; 154d382aafbSBarry Smith 155d382aafbSBarry Smith /*MC 156d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1573b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 158d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 159d382aafbSBarry Smith 160d382aafbSBarry Smith Level: intermediate 161d382aafbSBarry Smith 162d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 163d382aafbSBarry Smith M*/ 164f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 165f505b413SSatish Balay typedef long long Petsc64bitInt; 166f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 167236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 168236ed0a3SSatish Balay #else 169f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 170236ed0a3SSatish Balay #endif 171d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 172236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 173d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 174d382aafbSBarry Smith #else 175d382aafbSBarry Smith typedef int PetscInt; 176d382aafbSBarry Smith #define MPIU_INT MPI_INT 177d382aafbSBarry Smith #endif 178236ed0a3SSatish Balay 179d382aafbSBarry Smith 180702bc34aSSatish Balay /*MC 181702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 182702bc34aSSatish Balay 183702bc34aSSatish Balay Level: intermediate 184702bc34aSSatish Balay 185702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 186702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 187702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 188702bc34aSSatish Balay 189702bc34aSSatish Balay PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 1902981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 191702bc34aSSatish Balay 192702bc34aSSatish Balay PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 1932981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 194702bc34aSSatish Balay 1952981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 196702bc34aSSatish Balay if you run ./configure with the option 197702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 1982981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 1992981ebdbSBarry Smith 2002981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2012981ebdbSBarry Smith 2022981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 203702bc34aSSatish Balay 204702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 205702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 206702bc34aSSatish Balay 207702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 208702bc34aSSatish Balay 209702bc34aSSatish Balay M*/ 210702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 211702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 212702bc34aSSatish Balay #else 213702bc34aSSatish Balay typedef int PetscBLASInt; 214702bc34aSSatish Balay #endif 215702bc34aSSatish Balay 21658b60935SBarry Smith /*EC 21758b60935SBarry Smith 2182981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 21958b60935SBarry Smith 22058b60935SBarry Smith Level: advanced 22158b60935SBarry Smith 22258b60935SBarry Smith .seealso: PetscObjectSetPrecision() 22358b60935SBarry Smith E*/ 22458b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 225014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 22658b60935SBarry Smith 227503cfb0cSBarry Smith /* 228503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 229503cfb0cSBarry Smith */ 230d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 231adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 232d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 233adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 234d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 235adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 236d382aafbSBarry Smith #else 237d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 238d382aafbSBarry Smith #endif 239d382aafbSBarry Smith 240d382aafbSBarry Smith 241d382aafbSBarry Smith /* 242d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 243d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 244d382aafbSBarry Smith */ 245014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 246d382aafbSBarry Smith 247d382aafbSBarry Smith /* 248d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 249d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 250d382aafbSBarry Smith */ 251014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 252d382aafbSBarry Smith 253d382aafbSBarry Smith /*MC 254d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 255d382aafbSBarry Smith 256d382aafbSBarry Smith Synopsis: 257ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 258d382aafbSBarry Smith 259eca87e8dSBarry Smith Not Collective 260eca87e8dSBarry Smith 261d382aafbSBarry Smith Input Parameters: 262d382aafbSBarry Smith . cond - condition or expression 263d382aafbSBarry Smith 264d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 265d382aafbSBarry Smith branch is unlikely. 266d382aafbSBarry Smith 267d382aafbSBarry Smith Level: advanced 268d382aafbSBarry Smith 269d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 270d382aafbSBarry Smith M*/ 271d382aafbSBarry Smith 272d382aafbSBarry Smith /*MC 273d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 274d382aafbSBarry Smith 275d382aafbSBarry Smith Synopsis: 276ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 277d382aafbSBarry Smith 278eca87e8dSBarry Smith Not Collective 279eca87e8dSBarry Smith 280d382aafbSBarry Smith Input Parameters: 281d382aafbSBarry Smith . cond - condition or expression 282d382aafbSBarry Smith 283d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 284d382aafbSBarry Smith branch is likely. 285d382aafbSBarry Smith 286d382aafbSBarry Smith Level: advanced 287d382aafbSBarry Smith 288d382aafbSBarry Smith .seealso: PetscUnlikely() 289d382aafbSBarry Smith M*/ 290d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 291d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 292d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 293d382aafbSBarry Smith #else 294cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 295cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 296d382aafbSBarry Smith #endif 297d382aafbSBarry Smith 298d382aafbSBarry Smith /* 299d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 300d382aafbSBarry Smith */ 3012c8e378dSBarry Smith #include <petscmath.h> 302d382aafbSBarry Smith 303d382aafbSBarry Smith /* 304d382aafbSBarry Smith Declare extern C stuff after including external header files 305d382aafbSBarry Smith */ 306d382aafbSBarry Smith 307d382aafbSBarry Smith 308d382aafbSBarry Smith /* 309d382aafbSBarry Smith Basic PETSc constants 310d382aafbSBarry Smith */ 311d382aafbSBarry Smith 312d382aafbSBarry Smith /*E 313ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 314d382aafbSBarry Smith 315d382aafbSBarry Smith Level: beginner 316d382aafbSBarry Smith 317ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 31834e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 31934e82e7dSBarry Smith 320d382aafbSBarry Smith E*/ 321ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3226a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 323*c3aae356SJed Brown extern MPI_Datatype MPIU_BOOL; 32470b3c8c7SBarry Smith 32570b3c8c7SBarry Smith /*E 32670b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 32770b3c8c7SBarry Smith 32870b3c8c7SBarry Smith Level: beginner 32970b3c8c7SBarry Smith 33070b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 33170b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 33270b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 33370b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 33470b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 33570b3c8c7SBarry Smith 33670b3c8c7SBarry Smith E*/ 33770b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3386a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 339d382aafbSBarry Smith 340d382aafbSBarry Smith /*MC 341ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 342d382aafbSBarry Smith 343d382aafbSBarry Smith Level: beginner 344d382aafbSBarry Smith 345d382aafbSBarry Smith Note: Zero integer 346d382aafbSBarry Smith 347ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 348d382aafbSBarry Smith M*/ 349d382aafbSBarry Smith 350d382aafbSBarry Smith /*MC 351ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 352d382aafbSBarry Smith 353d382aafbSBarry Smith Level: beginner 354d382aafbSBarry Smith 355d382aafbSBarry Smith Note: Nonzero integer 356d382aafbSBarry Smith 357ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 358d382aafbSBarry Smith M*/ 359d382aafbSBarry Smith 360d382aafbSBarry Smith /*MC 361d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 362d382aafbSBarry Smith 363d382aafbSBarry Smith Level: beginner 364d382aafbSBarry Smith 365d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 366d382aafbSBarry Smith some default 367d382aafbSBarry Smith 368d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 369503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 370d382aafbSBarry Smith 37134e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 37234e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 37334e82e7dSBarry Smith 374d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 375d382aafbSBarry Smith 376d382aafbSBarry Smith M*/ 377d382aafbSBarry Smith #define PETSC_NULL 0 378d382aafbSBarry Smith 379d382aafbSBarry Smith /*MC 380d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 381d382aafbSBarry Smith 382d382aafbSBarry Smith Level: beginner 383d382aafbSBarry Smith 384d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 385d382aafbSBarry Smith some default 386d382aafbSBarry Smith 387d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 388d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 389d382aafbSBarry Smith 390d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 391d382aafbSBarry Smith 392d382aafbSBarry Smith M*/ 393d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 394d382aafbSBarry Smith 395d382aafbSBarry Smith /*MC 396557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 397557d4da8SBarry Smith where you wish PETSc to use the default. 398557d4da8SBarry Smith 399557d4da8SBarry Smith Level: beginner 400557d4da8SBarry Smith 401557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 402557d4da8SBarry Smith 403557d4da8SBarry Smith M*/ 404557d4da8SBarry Smith #define PETSC_DECIDE -1 405557d4da8SBarry Smith 406557d4da8SBarry Smith /*MC 407d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 408d382aafbSBarry Smith where you wish PETSc to compute the required value. 409d382aafbSBarry Smith 410d382aafbSBarry Smith Level: beginner 411d382aafbSBarry Smith 412557d4da8SBarry Smith 413557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 414557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 415557d4da8SBarry Smith 416d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 417d382aafbSBarry Smith 418d382aafbSBarry Smith M*/ 419d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 420d382aafbSBarry Smith 421d382aafbSBarry Smith /*MC 422557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 423557d4da8SBarry Smith where you wish PETSc to use the default. 424557d4da8SBarry Smith 425557d4da8SBarry Smith Level: beginner 426557d4da8SBarry Smith 427557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 428557d4da8SBarry Smith 429557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 430557d4da8SBarry Smith 431557d4da8SBarry Smith M*/ 432557d4da8SBarry Smith #define PETSC_DEFAULT -2 433557d4da8SBarry Smith 434557d4da8SBarry Smith /*MC 435d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 436d382aafbSBarry Smith all the processs that PETSc knows about. 437d382aafbSBarry Smith 438d382aafbSBarry Smith Level: beginner 439d382aafbSBarry Smith 440d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 441d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 442d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 443d382aafbSBarry Smith PetscInitialize() 444d382aafbSBarry Smith 445d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 446d382aafbSBarry Smith 447d382aafbSBarry Smith M*/ 448014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 449d382aafbSBarry Smith 450d382aafbSBarry Smith /*MC 451503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 452d382aafbSBarry Smith 453d382aafbSBarry Smith Level: beginner 454d382aafbSBarry Smith 455d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 456d382aafbSBarry Smith 457d382aafbSBarry Smith M*/ 458d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 459d382aafbSBarry Smith 460014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 461014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 462014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 463d382aafbSBarry Smith 464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 467d382aafbSBarry Smith 468d382aafbSBarry Smith /*MC 469d382aafbSBarry Smith PetscMalloc - Allocates memory 470d382aafbSBarry Smith 471eca87e8dSBarry Smith Synopsis: 472eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 473eca87e8dSBarry Smith 474eca87e8dSBarry Smith Not Collective 475eca87e8dSBarry Smith 476d382aafbSBarry Smith Input Parameter: 477d382aafbSBarry Smith . m - number of bytes to allocate 478d382aafbSBarry Smith 479d382aafbSBarry Smith Output Parameter: 480d382aafbSBarry Smith . result - memory allocated 481d382aafbSBarry Smith 482d382aafbSBarry Smith Level: beginner 483d382aafbSBarry Smith 484d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 485d382aafbSBarry Smith 486d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 487d382aafbSBarry Smith properly handle not freeing the null pointer. 488d382aafbSBarry Smith 489d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 490d382aafbSBarry Smith 491d382aafbSBarry Smith Concepts: memory allocation 492d382aafbSBarry Smith 493d382aafbSBarry Smith M*/ 4942714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 495d382aafbSBarry Smith 496d382aafbSBarry Smith /*MC 497503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 498d382aafbSBarry Smith 499d382aafbSBarry Smith Synopsis: 500d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 501d382aafbSBarry Smith 502eca87e8dSBarry Smith Not Collective 503eca87e8dSBarry Smith 504eca87e8dSBarry Smith Input Parameters: 505eca87e8dSBarry Smith . addr - address to align (any pointer type) 506eca87e8dSBarry Smith 507d382aafbSBarry Smith Level: developer 508d382aafbSBarry Smith 509d382aafbSBarry Smith .seealso: PetscMallocAlign() 510d382aafbSBarry Smith 511d382aafbSBarry Smith Concepts: memory allocation 512d382aafbSBarry Smith M*/ 513d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 514d382aafbSBarry Smith 515d382aafbSBarry Smith /*MC 516503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 517d382aafbSBarry Smith 518eca87e8dSBarry Smith Synopsis: 519eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 520eca87e8dSBarry Smith 521eca87e8dSBarry Smith Not Collective 522eca87e8dSBarry Smith 523d382aafbSBarry Smith Input Parameter: 524d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 525d382aafbSBarry Smith . t1 - type of first memory elements 526d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 527d382aafbSBarry Smith - t2 - type of second memory elements 528d382aafbSBarry Smith 529d382aafbSBarry Smith Output Parameter: 530d382aafbSBarry Smith + r1 - memory allocated in first chunk 531d382aafbSBarry Smith - r2 - memory allocated in second chunk 532d382aafbSBarry Smith 533d382aafbSBarry Smith Level: developer 534d382aafbSBarry Smith 535d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 536d382aafbSBarry Smith 537d382aafbSBarry Smith Concepts: memory allocation 538d382aafbSBarry Smith 539d382aafbSBarry Smith M*/ 540d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 541d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 542d382aafbSBarry Smith #else 5432981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 544d382aafbSBarry Smith #endif 545d382aafbSBarry Smith 546d382aafbSBarry Smith /*MC 547503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 548d382aafbSBarry Smith 549eca87e8dSBarry Smith Synopsis: 550eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 551eca87e8dSBarry Smith 552eca87e8dSBarry Smith Not Collective 553eca87e8dSBarry Smith 554d382aafbSBarry Smith Input Parameter: 555d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 556d382aafbSBarry Smith . t1 - type of first memory elements 557d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 558d382aafbSBarry Smith . t2 - type of second memory elements 559d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 560d382aafbSBarry Smith - t3 - type of third memory elements 561d382aafbSBarry Smith 562d382aafbSBarry Smith Output Parameter: 563d382aafbSBarry Smith + r1 - memory allocated in first chunk 564d382aafbSBarry Smith . r2 - memory allocated in second chunk 565d382aafbSBarry Smith - r3 - memory allocated in third chunk 566d382aafbSBarry Smith 567d382aafbSBarry Smith Level: developer 568d382aafbSBarry Smith 569d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 570d382aafbSBarry Smith 571d382aafbSBarry Smith Concepts: memory allocation 572d382aafbSBarry Smith 573d382aafbSBarry Smith M*/ 574d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 575d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 576d382aafbSBarry Smith #else 5773b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 578d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 579d382aafbSBarry Smith #endif 580d382aafbSBarry Smith 581d382aafbSBarry Smith /*MC 582503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 583d382aafbSBarry Smith 584eca87e8dSBarry Smith Synopsis: 585eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 586eca87e8dSBarry Smith 587eca87e8dSBarry Smith Not Collective 588eca87e8dSBarry Smith 589d382aafbSBarry Smith Input Parameter: 590d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 591d382aafbSBarry Smith . t1 - type of first memory elements 592d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 593d382aafbSBarry Smith . t2 - type of second memory elements 594d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 595d382aafbSBarry Smith . t3 - type of third memory elements 596d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 597d382aafbSBarry Smith - t4 - type of fourth memory elements 598d382aafbSBarry Smith 599d382aafbSBarry Smith Output Parameter: 600d382aafbSBarry Smith + r1 - memory allocated in first chunk 601d382aafbSBarry Smith . r2 - memory allocated in second chunk 602d382aafbSBarry Smith . r3 - memory allocated in third chunk 603d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 604d382aafbSBarry Smith 605d382aafbSBarry Smith Level: developer 606d382aafbSBarry Smith 607d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 608d382aafbSBarry Smith 609d382aafbSBarry Smith Concepts: memory allocation 610d382aafbSBarry Smith 611d382aafbSBarry Smith M*/ 612d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 613d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 614d382aafbSBarry Smith #else 615d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6163b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 617d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 618d382aafbSBarry Smith #endif 619d382aafbSBarry Smith 620d382aafbSBarry Smith /*MC 621503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 622d382aafbSBarry Smith 623eca87e8dSBarry Smith Synopsis: 624eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 625eca87e8dSBarry Smith 626eca87e8dSBarry Smith Not Collective 627eca87e8dSBarry Smith 628d382aafbSBarry Smith Input Parameter: 629d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 630d382aafbSBarry Smith . t1 - type of first memory elements 631d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 632d382aafbSBarry Smith . t2 - type of second memory elements 633d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 634d382aafbSBarry Smith . t3 - type of third memory elements 635d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 636d382aafbSBarry Smith . t4 - type of fourth memory elements 637d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 638d382aafbSBarry Smith - t5 - type of fifth memory elements 639d382aafbSBarry Smith 640d382aafbSBarry Smith Output Parameter: 641d382aafbSBarry Smith + r1 - memory allocated in first chunk 642d382aafbSBarry Smith . r2 - memory allocated in second chunk 643d382aafbSBarry Smith . r3 - memory allocated in third chunk 644d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 645d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 646d382aafbSBarry Smith 647d382aafbSBarry Smith Level: developer 648d382aafbSBarry Smith 649d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 650d382aafbSBarry Smith 651d382aafbSBarry Smith Concepts: memory allocation 652d382aafbSBarry Smith 653d382aafbSBarry Smith M*/ 654d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 655d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 656d382aafbSBarry Smith #else 657d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 6583b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 659d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 660d382aafbSBarry Smith #endif 661d382aafbSBarry Smith 662d382aafbSBarry Smith 663d382aafbSBarry Smith /*MC 664503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 665d382aafbSBarry Smith 666eca87e8dSBarry Smith Synopsis: 667eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 668eca87e8dSBarry Smith 669eca87e8dSBarry Smith Not Collective 670eca87e8dSBarry Smith 671d382aafbSBarry Smith Input Parameter: 672d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 673d382aafbSBarry Smith . t1 - type of first memory elements 674d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 675d382aafbSBarry Smith . t2 - type of second memory elements 676d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 677d382aafbSBarry Smith . t3 - type of third memory elements 678d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 679d382aafbSBarry Smith . t4 - type of fourth memory elements 680d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 681d382aafbSBarry Smith . t5 - type of fifth memory elements 682d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 683d382aafbSBarry Smith - t6 - type of sixth memory elements 684d382aafbSBarry Smith 685d382aafbSBarry Smith Output Parameter: 686d382aafbSBarry Smith + r1 - memory allocated in first chunk 687d382aafbSBarry Smith . r2 - memory allocated in second chunk 688d382aafbSBarry Smith . r3 - memory allocated in third chunk 689d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 690d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 691d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 692d382aafbSBarry Smith 693d382aafbSBarry Smith Level: developer 694d382aafbSBarry Smith 695d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 696d382aafbSBarry Smith 697d382aafbSBarry Smith Concepts: memory allocation 698d382aafbSBarry Smith 699d382aafbSBarry Smith M*/ 700d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 701d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 702d382aafbSBarry Smith #else 703d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7043b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 705d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 706d382aafbSBarry Smith #endif 707d382aafbSBarry Smith 708d382aafbSBarry Smith /*MC 709503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 710d382aafbSBarry Smith 711eca87e8dSBarry Smith Synopsis: 712eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 713eca87e8dSBarry Smith 714eca87e8dSBarry Smith Not Collective 715eca87e8dSBarry Smith 716d382aafbSBarry Smith Input Parameter: 717d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 718d382aafbSBarry Smith . t1 - type of first memory elements 719d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 720d382aafbSBarry Smith . t2 - type of second memory elements 721d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 722d382aafbSBarry Smith . t3 - type of third memory elements 723d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 724d382aafbSBarry Smith . t4 - type of fourth memory elements 725d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 726d382aafbSBarry Smith . t5 - type of fifth memory elements 727d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 728d382aafbSBarry Smith . t6 - type of sixth memory elements 729d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 730d382aafbSBarry Smith - t7 - type of sixth memory elements 731d382aafbSBarry Smith 732d382aafbSBarry Smith Output Parameter: 733d382aafbSBarry Smith + r1 - memory allocated in first chunk 734d382aafbSBarry Smith . r2 - memory allocated in second chunk 735d382aafbSBarry Smith . r3 - memory allocated in third chunk 736d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 737d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 738d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 739eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 740d382aafbSBarry Smith 741d382aafbSBarry Smith Level: developer 742d382aafbSBarry Smith 743d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 744d382aafbSBarry Smith 745d382aafbSBarry Smith Concepts: memory allocation 746d382aafbSBarry Smith 747d382aafbSBarry Smith M*/ 748d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 749d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 750d382aafbSBarry Smith #else 751d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 7523b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 753d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 754d382aafbSBarry Smith #endif 755d382aafbSBarry Smith 756d382aafbSBarry Smith /*MC 757503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 758d382aafbSBarry Smith 759eca87e8dSBarry Smith Synopsis: 760eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 761eca87e8dSBarry Smith 762eca87e8dSBarry Smith Not Collective 763eca87e8dSBarry Smith 764d382aafbSBarry Smith Input Parameter: 765d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 766d382aafbSBarry Smith 767d382aafbSBarry Smith Output Parameter: 768d382aafbSBarry Smith . result - memory allocated 769d382aafbSBarry Smith 770d382aafbSBarry Smith Level: beginner 771d382aafbSBarry Smith 772ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 773d382aafbSBarry Smith 774d382aafbSBarry Smith Concepts: memory allocation 775d382aafbSBarry Smith 776d382aafbSBarry Smith M*/ 777d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 778ad0619ddSBarry Smith 779ad0619ddSBarry Smith /*MC 780ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 781ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 782ad0619ddSBarry Smith 783ad0619ddSBarry Smith Synopsis: 784ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 785ad0619ddSBarry Smith 786ad0619ddSBarry Smith Not Collective 787ad0619ddSBarry Smith 788ad0619ddSBarry Smith Input Parameter: 789ad0619ddSBarry Smith + obj - object memory is logged to 790ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 791ad0619ddSBarry Smith 792ad0619ddSBarry Smith Output Parameter: 793ad0619ddSBarry Smith . result - memory allocated 794ad0619ddSBarry Smith 795ad0619ddSBarry Smith Level: developer 796ad0619ddSBarry Smith 797ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 798ad0619ddSBarry Smith 799ad0619ddSBarry Smith Concepts: memory allocation 800ad0619ddSBarry Smith 801ad0619ddSBarry Smith M*/ 802d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 803d382aafbSBarry Smith 804d382aafbSBarry Smith /*MC 805d382aafbSBarry Smith PetscFree - Frees memory 806d382aafbSBarry Smith 807eca87e8dSBarry Smith Synopsis: 808eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 809eca87e8dSBarry Smith 810eca87e8dSBarry Smith Not Collective 811eca87e8dSBarry Smith 812d382aafbSBarry Smith Input Parameter: 813d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 814d382aafbSBarry Smith 815d382aafbSBarry Smith Level: beginner 816d382aafbSBarry Smith 817d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 818d382aafbSBarry Smith 819d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 820d382aafbSBarry Smith 821d382aafbSBarry Smith Concepts: memory allocation 822d382aafbSBarry Smith 823d382aafbSBarry Smith M*/ 82412537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 825d382aafbSBarry Smith 826d382aafbSBarry Smith /*MC 827d382aafbSBarry Smith PetscFreeVoid - Frees memory 828d382aafbSBarry Smith 829d382aafbSBarry Smith Synopsis: 830d382aafbSBarry Smith void PetscFreeVoid(void *memory) 831d382aafbSBarry Smith 832eca87e8dSBarry Smith Not Collective 833eca87e8dSBarry Smith 834eca87e8dSBarry Smith Input Parameter: 835eca87e8dSBarry Smith . memory - memory to free 836eca87e8dSBarry Smith 837d382aafbSBarry Smith Level: beginner 838d382aafbSBarry Smith 839d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 840d382aafbSBarry Smith 841d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 842d382aafbSBarry Smith 843d382aafbSBarry Smith Concepts: memory allocation 844d382aafbSBarry Smith 845d382aafbSBarry Smith M*/ 8462714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 847d382aafbSBarry Smith 848d382aafbSBarry Smith 849d382aafbSBarry Smith /*MC 850d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 851d382aafbSBarry Smith 852eca87e8dSBarry Smith Synopsis: 853eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 854eca87e8dSBarry Smith 855eca87e8dSBarry Smith Not Collective 856eca87e8dSBarry Smith 857d382aafbSBarry Smith Input Parameter: 858d382aafbSBarry Smith + memory1 - memory to free 859d382aafbSBarry Smith - memory2 - 2nd memory to free 860d382aafbSBarry Smith 861d382aafbSBarry Smith Level: developer 862d382aafbSBarry Smith 863d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 864d382aafbSBarry Smith 865d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 866d382aafbSBarry Smith 867d382aafbSBarry Smith Concepts: memory allocation 868d382aafbSBarry Smith 869d382aafbSBarry Smith M*/ 870d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 871d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 872d382aafbSBarry Smith #else 87381dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 874d382aafbSBarry Smith #endif 875d382aafbSBarry Smith 876d382aafbSBarry Smith /*MC 877d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 878d382aafbSBarry Smith 879eca87e8dSBarry Smith Synopsis: 880eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 881eca87e8dSBarry Smith 882eca87e8dSBarry Smith Not Collective 883eca87e8dSBarry Smith 884d382aafbSBarry Smith Input Parameter: 885d382aafbSBarry Smith + memory1 - memory to free 886d382aafbSBarry Smith . memory2 - 2nd memory to free 887d382aafbSBarry Smith - memory3 - 3rd memory to free 888d382aafbSBarry Smith 889d382aafbSBarry Smith Level: developer 890d382aafbSBarry Smith 891d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 892d382aafbSBarry Smith 893d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 894d382aafbSBarry Smith 895d382aafbSBarry Smith Concepts: memory allocation 896d382aafbSBarry Smith 897d382aafbSBarry Smith M*/ 898d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 899d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 900d382aafbSBarry Smith #else 90181dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 902d382aafbSBarry Smith #endif 903d382aafbSBarry Smith 904d382aafbSBarry Smith /*MC 905d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 906d382aafbSBarry Smith 907eca87e8dSBarry Smith Synopsis: 908eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 909eca87e8dSBarry Smith 910eca87e8dSBarry Smith Not Collective 911eca87e8dSBarry Smith 912d382aafbSBarry Smith Input Parameter: 913d382aafbSBarry Smith + m1 - memory to free 914d382aafbSBarry Smith . m2 - 2nd memory to free 915d382aafbSBarry Smith . m3 - 3rd memory to free 916d382aafbSBarry Smith - m4 - 4th memory to free 917d382aafbSBarry Smith 918d382aafbSBarry Smith Level: developer 919d382aafbSBarry Smith 920d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 921d382aafbSBarry Smith 922d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 923d382aafbSBarry Smith 924d382aafbSBarry Smith Concepts: memory allocation 925d382aafbSBarry Smith 926d382aafbSBarry Smith M*/ 927d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 928d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 929d382aafbSBarry Smith #else 93081dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 931d382aafbSBarry Smith #endif 932d382aafbSBarry Smith 933d382aafbSBarry Smith /*MC 934d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 935d382aafbSBarry Smith 936eca87e8dSBarry Smith Synopsis: 937eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 938eca87e8dSBarry Smith 939eca87e8dSBarry Smith Not Collective 940eca87e8dSBarry Smith 941d382aafbSBarry Smith Input Parameter: 942d382aafbSBarry Smith + m1 - memory to free 943d382aafbSBarry Smith . m2 - 2nd memory to free 944d382aafbSBarry Smith . m3 - 3rd memory to free 945d382aafbSBarry Smith . m4 - 4th memory to free 946d382aafbSBarry Smith - m5 - 5th memory to free 947d382aafbSBarry Smith 948d382aafbSBarry Smith Level: developer 949d382aafbSBarry Smith 950d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 951d382aafbSBarry Smith 952d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 953d382aafbSBarry Smith 954d382aafbSBarry Smith Concepts: memory allocation 955d382aafbSBarry Smith 956d382aafbSBarry Smith M*/ 957d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 958d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 959d382aafbSBarry Smith #else 96081dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 961d382aafbSBarry Smith #endif 962d382aafbSBarry Smith 963d382aafbSBarry Smith 964d382aafbSBarry Smith /*MC 965d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 966d382aafbSBarry Smith 967eca87e8dSBarry Smith Synopsis: 968eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 969eca87e8dSBarry Smith 970eca87e8dSBarry Smith Not Collective 971eca87e8dSBarry Smith 972d382aafbSBarry Smith Input Parameter: 973d382aafbSBarry Smith + m1 - memory to free 974d382aafbSBarry Smith . m2 - 2nd memory to free 975d382aafbSBarry Smith . m3 - 3rd memory to free 976d382aafbSBarry Smith . m4 - 4th memory to free 977d382aafbSBarry Smith . m5 - 5th memory to free 978d382aafbSBarry Smith - m6 - 6th memory to free 979d382aafbSBarry Smith 980d382aafbSBarry Smith 981d382aafbSBarry Smith Level: developer 982d382aafbSBarry Smith 983d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 984d382aafbSBarry Smith 985d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 986d382aafbSBarry Smith 987d382aafbSBarry Smith Concepts: memory allocation 988d382aafbSBarry Smith 989d382aafbSBarry Smith M*/ 990d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 991d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 992d382aafbSBarry Smith #else 99381dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 994d382aafbSBarry Smith #endif 995d382aafbSBarry Smith 996d382aafbSBarry Smith /*MC 997d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 998d382aafbSBarry Smith 999eca87e8dSBarry Smith Synopsis: 1000eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1001eca87e8dSBarry Smith 1002eca87e8dSBarry Smith Not Collective 1003eca87e8dSBarry Smith 1004d382aafbSBarry Smith Input Parameter: 1005d382aafbSBarry Smith + m1 - memory to free 1006d382aafbSBarry Smith . m2 - 2nd memory to free 1007d382aafbSBarry Smith . m3 - 3rd memory to free 1008d382aafbSBarry Smith . m4 - 4th memory to free 1009d382aafbSBarry Smith . m5 - 5th memory to free 1010d382aafbSBarry Smith . m6 - 6th memory to free 1011d382aafbSBarry Smith - m7 - 7th memory to free 1012d382aafbSBarry Smith 1013d382aafbSBarry Smith 1014d382aafbSBarry Smith Level: developer 1015d382aafbSBarry Smith 1016d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1017d382aafbSBarry Smith 1018d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1019d382aafbSBarry Smith PetscMalloc7() 1020d382aafbSBarry Smith 1021d382aafbSBarry Smith Concepts: memory allocation 1022d382aafbSBarry Smith 1023d382aafbSBarry Smith M*/ 1024d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1025d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1026d382aafbSBarry Smith #else 102781dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1028d382aafbSBarry Smith #endif 1029d382aafbSBarry Smith 1030014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 1031014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 1032014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 1033014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1034d382aafbSBarry Smith 1035d382aafbSBarry Smith /* 1036a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1037a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1038a5057860SBarry Smith timing etc. 1039a5057860SBarry Smith */ 1040a5057860SBarry Smith typedef double PetscLogDouble; 1041a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1042a5057860SBarry Smith 1043a5057860SBarry Smith /* 104466d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1045d382aafbSBarry Smith */ 1046014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1047014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1048014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1049014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1050014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 1051014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 1052014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1053574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1054014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1055d382aafbSBarry Smith 1056d382aafbSBarry Smith /*E 1057d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1058d382aafbSBarry Smith 1059d382aafbSBarry Smith Level: beginner 1060d382aafbSBarry Smith 1061d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1062d382aafbSBarry Smith 1063d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1064d382aafbSBarry Smith PetscDataTypeGetSize() 1065d382aafbSBarry Smith 1066d382aafbSBarry Smith E*/ 1067d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 10682d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 10696a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1070d382aafbSBarry Smith 1071d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1072d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1073d382aafbSBarry Smith #else 1074ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1075d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 107659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 107759a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1078d382aafbSBarry Smith #else 1079d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1080d382aafbSBarry Smith #endif 1081d382aafbSBarry Smith #endif 1082ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1083d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 108459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 108559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1086d382aafbSBarry Smith #else 1087d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1088d382aafbSBarry Smith #endif 1089d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1090d382aafbSBarry Smith 1091014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1092014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1093014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1094d382aafbSBarry Smith 1095d382aafbSBarry Smith /* 1096d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1097d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1098d382aafbSBarry Smith functionality and/or error checking. 1099d382aafbSBarry Smith */ 1100014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1101014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1102014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1103014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1104d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1105014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1106014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1107014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1108014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1109014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1110014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1111014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1112014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1113014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1114014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1115014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 11162f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1118014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1119014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1120014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11212c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1122014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1123014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 112447340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 11256fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1126014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith /*S 1129d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1130d382aafbSBarry Smith 1131d382aafbSBarry Smith Level: intermediate 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1134d382aafbSBarry Smith S*/ 1135d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1136d382aafbSBarry Smith 1137014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1138014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith /* 1142d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1143d382aafbSBarry Smith */ 1144014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 11457c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1146014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 11472414b3c7SJed Brown #else 11482414b3c7SJed Brown #define MPIU_SUM MPI_SUM 11492414b3c7SJed Brown #endif 11502414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1151014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1152014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1153d9822059SBarry Smith #else 1154d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1155d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1156d9822059SBarry Smith #endif 1157014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1158d382aafbSBarry Smith 1159014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1160014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1161eb3f98d2SBarry Smith 1162d382aafbSBarry Smith /*S 1163d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith Level: beginner 1166d382aafbSBarry Smith 11672981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1168d382aafbSBarry Smith 11691890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1170d382aafbSBarry Smith S*/ 1171d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1172d382aafbSBarry Smith 1173d382aafbSBarry Smith /*S 1174d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1175d382aafbSBarry Smith by string name 1176d382aafbSBarry Smith 1177d382aafbSBarry Smith Level: advanced 1178d382aafbSBarry Smith 11792981ebdbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy(), PetscOpFlist 1180d382aafbSBarry Smith S*/ 1181d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1182d382aafbSBarry Smith 1183e4d1774bSDmitry Karpeev /*S 1184e4d1774bSDmitry Karpeev PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries, 1185e4d1774bSDmitry Karpeev accessed by string op name together with string argument types. 1186e4d1774bSDmitry Karpeev 1187e4d1774bSDmitry Karpeev Level: advanced 1188e4d1774bSDmitry Karpeev 11892981ebdbSBarry Smith .seealso: PetscFList, PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy() 1190e4d1774bSDmitry Karpeev S*/ 1191e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList; 1192e4d1774bSDmitry Karpeev 1193d382aafbSBarry Smith /*E 1194d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1195d382aafbSBarry Smith 1196d382aafbSBarry Smith Level: beginner 1197d382aafbSBarry Smith 1198d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1199d382aafbSBarry Smith 1200d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1205d382aafbSBarry Smith 1206d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1207d382aafbSBarry Smith 1208d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1209d382aafbSBarry Smith E*/ 1210d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1211d382aafbSBarry Smith 12122c8e378dSBarry Smith #include <petscviewer.h> 12132c8e378dSBarry Smith #include <petscoptions.h> 1214d382aafbSBarry Smith 12150700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1216014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1217014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1218014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith /* 1221d382aafbSBarry Smith Routines that get memory usage information from the OS 1222d382aafbSBarry Smith */ 1223014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1224014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1225014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1226014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1227d382aafbSBarry Smith 1228014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1229014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTime(PetscLogDouble*); 1230014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 1231014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith /* 1234d382aafbSBarry Smith Initialization of PETSc 1235d382aafbSBarry Smith */ 1236014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1237014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1238014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1239014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1240014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1241014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1242014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1245014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1246d382aafbSBarry Smith 1247014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1248014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(const char[]); 1249d382aafbSBarry Smith 1250014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD; 1251014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1252014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1253014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void); 1254014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1255014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1256014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1257014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1258d382aafbSBarry Smith 1259014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1260014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1261014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1262014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith /* 1265d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 12662981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1267d382aafbSBarry Smith */ 1268638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1269638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1270638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1271d382aafbSBarry Smith 1272d382aafbSBarry Smith /* 1273d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1274d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1275503cfb0cSBarry Smith 1276503cfb0cSBarry Smith Level: developer 1277503cfb0cSBarry Smith 1278503cfb0cSBarry Smith .seealso: PetscUseMethod() 1279d382aafbSBarry Smith */ 1280d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1281d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1282d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1283d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1284d382aafbSBarry Smith } 1285503cfb0cSBarry Smith 1286503cfb0cSBarry Smith /* 1287503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1288503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1289503cfb0cSBarry Smith 1290503cfb0cSBarry Smith Level: developer 1291503cfb0cSBarry Smith 1292503cfb0cSBarry Smith .seealso: PetscTryMethod() 1293503cfb0cSBarry Smith */ 1294d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1295d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1296d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1297d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1298703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1299d382aafbSBarry Smith } 1300503cfb0cSBarry Smith 1301d382aafbSBarry Smith /* 1302d382aafbSBarry Smith Functions that can act on any PETSc object. 1303d382aafbSBarry Smith */ 1304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1308014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1310014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 1314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1321014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 1322014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1323014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1325014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1333d382aafbSBarry Smith 1334d382aafbSBarry Smith /*MC 1335d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1336d382aafbSBarry Smith 1337eca87e8dSBarry Smith Synopsis: 1338eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1339eca87e8dSBarry Smith 1340ad4df100SBarry Smith Logically Collective on PetscObject 1341d382aafbSBarry Smith 1342d382aafbSBarry Smith Input Parameters: 1343d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1344d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1345d382aafbSBarry Smith . name - name associated with the child function 1346d382aafbSBarry Smith . fname - name of the function 1347d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1348d382aafbSBarry Smith 1349d382aafbSBarry Smith Level: advanced 1350d382aafbSBarry Smith 1351d382aafbSBarry Smith 1352d382aafbSBarry Smith Notes: 1353d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1354d382aafbSBarry Smith 1355d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1356d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 135920de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1360d382aafbSBarry Smith enabled. 1361d382aafbSBarry Smith 1362d382aafbSBarry Smith Concepts: objects^composing functions 1363d382aafbSBarry Smith Concepts: composing functions 1364d382aafbSBarry Smith Concepts: functions^querying 1365d382aafbSBarry Smith Concepts: objects^querying 1366d382aafbSBarry Smith Concepts: querying objects 1367d382aafbSBarry Smith 1368d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1369d382aafbSBarry Smith M*/ 1370d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1371d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1372d382aafbSBarry Smith #else 1373d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1374d382aafbSBarry Smith #endif 1375d382aafbSBarry Smith 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAMSPublish(PetscObject); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectUnPublish(PetscObject); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1391d382aafbSBarry Smith 13927d5d4d99SBarry Smith typedef void* PetscDLHandle; 1393e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 1394e4d177b5SBarry Smith extern PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 13957d5d4d99SBarry Smith extern PetscErrorCode PetscDLClose(PetscDLHandle *); 13967d5d4d99SBarry Smith extern PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 13977d5d4d99SBarry Smith 1398d382aafbSBarry Smith /* 1399d382aafbSBarry Smith Defines PETSc error handling. 1400d382aafbSBarry Smith */ 14012c8e378dSBarry Smith #include <petscerror.h> 1402d382aafbSBarry Smith 14035fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1404a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 14055fe58b6fSBarry Smith #endif 14067eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1407a64a8e02SBarry Smith 1408d382aafbSBarry Smith /*S 1409503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1410d382aafbSBarry Smith 14111d0fab5eSBarry Smith Level: developer 1412d382aafbSBarry Smith 14131d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14141d0fab5eSBarry Smith 14152981ebdbSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFList 1416d382aafbSBarry Smith S*/ 1417d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1418d382aafbSBarry Smith 1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListDestroy(PetscOList*); 1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1425d382aafbSBarry Smith 1426d382aafbSBarry Smith /* 1427503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1428d382aafbSBarry Smith link libraries that will be loaded as needed. 1429d382aafbSBarry Smith */ 1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListDestroy(PetscFList*); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1434d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1435d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1436d382aafbSBarry Smith #else 1437d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1438d382aafbSBarry Smith #endif 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListView(PetscFList,PetscViewer); 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListConcat(const char [],const char [],char []); 1442065533a5SJed Brown PETSC_EXTERN PetscErrorCode PetscFListGet(PetscFList,const char ***,int*); 1443d382aafbSBarry Smith 144448703020SDmitry Karpeev /* 144548703020SDmitry Karpeev Multiple dispatch operation function lists. Lists of names of routines with corresponding 144648703020SDmitry Karpeev argument type names with function pointers or in dynamic link libraries that will be loaded 144748703020SDmitry Karpeev as needed. Search on the op name and argument type names. 144848703020SDmitry Karpeev */ 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListDestroy(PetscOpFList*); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer); 14532981ebdbSBarry Smith 1454d382aafbSBarry Smith /*S 1455d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1456d382aafbSBarry Smith 1457d382aafbSBarry Smith Level: advanced 1458d382aafbSBarry Smith 145920de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1460d382aafbSBarry Smith 1461d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1462d382aafbSBarry Smith S*/ 1463d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1464014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1472d382aafbSBarry Smith 1473d382aafbSBarry Smith /* 1474a5a3d712SDmitry Karpeev PetscShell support. Needs to be better documented. 147505846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 147605846914SDmitry Karpeev */ 14772c8e378dSBarry Smith #include <petscshell.h> 147805846914SDmitry Karpeev 147905846914SDmitry Karpeev /* 1480d382aafbSBarry Smith Useful utility routines 1481d382aafbSBarry Smith */ 1482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1484014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1485014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1487014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1488d382aafbSBarry Smith 1489503cfb0cSBarry Smith /* 1490ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1491503cfb0cSBarry Smith 1492503cfb0cSBarry Smith Notes: This is useful in cases like 1493503cfb0cSBarry Smith $ int *a; 1494ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1495ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1496503cfb0cSBarry Smith */ 1497d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1498503cfb0cSBarry Smith 1499d382aafbSBarry Smith /* 1500d382aafbSBarry Smith Defines basic graphics available from PETSc. 1501d382aafbSBarry Smith */ 15022c8e378dSBarry Smith #include <petscdraw.h> 1503d382aafbSBarry Smith 1504cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1505cae2f346SBarry Smith # include <valgrind/valgrind.h> 1506cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1507cae2f346SBarry Smith #else 1508cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1509cae2f346SBarry Smith #endif 1510cae2f346SBarry Smith 1511d382aafbSBarry Smith /* 1512d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1513d382aafbSBarry Smith */ 15142c8e378dSBarry Smith #include <petsc-private/petscimpl.h> 1515503cfb0cSBarry Smith 1516238ccf28SShri Abhyankar 1517d382aafbSBarry Smith /*MC 1518d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1519d382aafbSBarry Smith 1520d382aafbSBarry Smith Synopsis: 1521d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1522d382aafbSBarry Smith 1523eca87e8dSBarry Smith Not Collective 1524eca87e8dSBarry Smith 1525d382aafbSBarry Smith Input Parameters: 1526d382aafbSBarry Smith . format - the usual printf() format string 1527d382aafbSBarry Smith 1528d382aafbSBarry Smith Options Database Keys: 1529d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1530d382aafbSBarry Smith (default) stderr 1531d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1532d382aafbSBarry Smith error is handled.) 1533d382aafbSBarry Smith 1534d382aafbSBarry Smith Notes: Use 1535d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1536d382aafbSBarry Smith $ error is handled.) and 1537d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1538c9a19010SBarry Smith $ of you can use your own function 1539d382aafbSBarry Smith 1540d382aafbSBarry Smith Use 1541d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1542d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1543d382aafbSBarry Smith 1544d382aafbSBarry Smith Use 1545d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1546d382aafbSBarry Smith 1547d382aafbSBarry Smith Level: developer 1548d382aafbSBarry Smith 1549d382aafbSBarry Smith Fortran Note: 1550d382aafbSBarry Smith This routine is not supported in Fortran. 1551d382aafbSBarry Smith 1552d382aafbSBarry Smith Concepts: error messages^printing 1553d382aafbSBarry Smith Concepts: printing^error messages 1554d382aafbSBarry Smith 1555c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1556d382aafbSBarry Smith M*/ 1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1558d382aafbSBarry Smith 1559d382aafbSBarry Smith /*MC 1560d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1561d382aafbSBarry Smith 1562d382aafbSBarry Smith Synopsis: 1563d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1564d382aafbSBarry Smith 1565eca87e8dSBarry Smith Not Collective 1566eca87e8dSBarry Smith 1567d382aafbSBarry Smith Input Parameters: 1568d382aafbSBarry Smith . format - the usual printf() format string 1569d382aafbSBarry Smith 1570d382aafbSBarry Smith Level: developer 1571d382aafbSBarry Smith 1572d382aafbSBarry Smith Fortran Note: 1573d382aafbSBarry Smith This routine is not supported in Fortran. 1574d382aafbSBarry Smith 1575d382aafbSBarry Smith Concepts: help messages^printing 1576d382aafbSBarry Smith Concepts: printing^help messages 1577d382aafbSBarry Smith 1578d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1579d382aafbSBarry Smith M*/ 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1581d382aafbSBarry Smith 1582fcfd50ebSBarry Smith /* 1583fcfd50ebSBarry Smith Defines PETSc profiling. 1584fcfd50ebSBarry Smith */ 15852c8e378dSBarry Smith #include <petsclog.h> 1586fcfd50ebSBarry Smith 1587fcfd50ebSBarry Smith /* 1588fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1589fcfd50ebSBarry Smith */ 1590fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1591014dd563SJed Brown PETSC_EXTERN PetscBool PetscAMSPublishAll; 1592fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1593fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1594fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1595fcfd50ebSBarry Smith #else 1596fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1597fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1598fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1599fcfd50ebSBarry Smith #endif 1600fcfd50ebSBarry Smith 1601fcfd50ebSBarry Smith /* 1602fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1603fcfd50ebSBarry Smith */ 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1611fcfd50ebSBarry Smith 1612fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1613fcfd50ebSBarry Smith #include <stdarg.h> 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1617fcfd50ebSBarry Smith 1618fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1620fcfd50ebSBarry Smith #endif 1621fcfd50ebSBarry Smith 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1625d382aafbSBarry Smith 1626d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1628784ad74dSJed Brown PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,PetscInt*); 1629d382aafbSBarry Smith #endif 1630d382aafbSBarry Smith 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1638d382aafbSBarry Smith 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1640d382aafbSBarry Smith 1641d382aafbSBarry Smith /*S 1642d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1643d382aafbSBarry Smith 1644d382aafbSBarry Smith Level: advanced 1645d382aafbSBarry Smith 1646d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1647d382aafbSBarry Smith S*/ 1648014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1649d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1655d382aafbSBarry Smith 1656d382aafbSBarry Smith /* 1657d382aafbSBarry Smith For use in debuggers 1658d382aafbSBarry Smith */ 1659014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1660014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1664d382aafbSBarry Smith 1665d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1666d382aafbSBarry Smith #include <memory.h> 1667d382aafbSBarry Smith #endif 1668d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1669d382aafbSBarry Smith #include <stdlib.h> 1670d382aafbSBarry Smith #endif 1671d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1672d382aafbSBarry Smith #include <strings.h> 1673d382aafbSBarry Smith #endif 1674d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1675d382aafbSBarry Smith #include <string.h> 1676d382aafbSBarry Smith #endif 16776c7e564aSBarry Smith 16784a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1679d382aafbSBarry Smith #include <xmmintrin.h> 1680d382aafbSBarry Smith #endif 1681d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1682d382aafbSBarry Smith #include <stdint.h> 1683d382aafbSBarry Smith #endif 1684d382aafbSBarry Smith 1685fcfd50ebSBarry Smith #undef __FUNCT__ 1686fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1687d382aafbSBarry Smith /*@C 1688d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1689d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1690d382aafbSBarry Smith PetscMemmove() in that case. 1691d382aafbSBarry Smith 1692d382aafbSBarry Smith Not Collective 1693d382aafbSBarry Smith 1694d382aafbSBarry Smith Input Parameters: 1695d382aafbSBarry Smith + b - pointer to initial memory space 1696d382aafbSBarry Smith - n - length (in bytes) of space to copy 1697d382aafbSBarry Smith 1698d382aafbSBarry Smith Output Parameter: 1699d382aafbSBarry Smith . a - pointer to copy space 1700d382aafbSBarry Smith 1701d382aafbSBarry Smith Level: intermediate 1702d382aafbSBarry Smith 1703d382aafbSBarry Smith Compile Option: 1704d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1705d382aafbSBarry Smith for memory copies on double precision values. 1706d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1707d382aafbSBarry Smith for memory copies on double precision values. 1708d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1709d382aafbSBarry Smith for memory copies on double precision values. 1710d382aafbSBarry Smith 1711d382aafbSBarry Smith Note: 1712d382aafbSBarry Smith This routine is analogous to memcpy(). 1713d382aafbSBarry Smith 1714503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1715503cfb0cSBarry Smith 1716d382aafbSBarry Smith Concepts: memory^copying 1717d382aafbSBarry Smith Concepts: copying^memory 1718d382aafbSBarry Smith 1719d382aafbSBarry Smith .seealso: PetscMemmove() 1720d382aafbSBarry Smith 1721d382aafbSBarry Smith @*/ 17227087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1723d382aafbSBarry Smith { 1724d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1725d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1726d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1727a7e36092SMatthew G Knepley PetscFunctionBegin; 1728e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1729e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1730a7e36092SMatthew G Knepley #else 1731d382aafbSBarry Smith PetscFunctionBegin; 1732a7e36092SMatthew G Knepley #endif 1733d382aafbSBarry Smith if (a != b) { 1734d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1735e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1736d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1737d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1738d382aafbSBarry Smith #endif 1739d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1740d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1741d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1742d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1743d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1744d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1745d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1746d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1747d382aafbSBarry Smith #else 1748d382aafbSBarry Smith size_t i; 1749d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1750d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1751d382aafbSBarry Smith #endif 1752d382aafbSBarry Smith } else { 1753d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1754d382aafbSBarry Smith } 1755d382aafbSBarry Smith #else 1756d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1757d382aafbSBarry Smith #endif 1758d382aafbSBarry Smith } 1759d382aafbSBarry Smith PetscFunctionReturn(0); 1760d382aafbSBarry Smith } 1761d382aafbSBarry Smith 1762d382aafbSBarry Smith /*@C 1763d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1764d382aafbSBarry Smith 1765d382aafbSBarry Smith Not Collective 1766d382aafbSBarry Smith 1767d382aafbSBarry Smith Input Parameters: 1768d382aafbSBarry Smith + a - pointer to beginning memory location 1769d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith Level: intermediate 1772d382aafbSBarry Smith 1773d382aafbSBarry Smith Compile Option: 1774d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1775d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1776d382aafbSBarry Smith 1777503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1778503cfb0cSBarry Smith 1779d382aafbSBarry Smith Concepts: memory^zeroing 1780d382aafbSBarry Smith Concepts: zeroing^memory 1781d382aafbSBarry Smith 1782d382aafbSBarry Smith .seealso: PetscMemcpy() 1783d382aafbSBarry Smith @*/ 17847087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1785d382aafbSBarry Smith { 1786d382aafbSBarry Smith if (n > 0) { 1787d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1788e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1789d382aafbSBarry Smith #endif 1790d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1791d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1792d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1793d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1794d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1795d382aafbSBarry Smith } else { 1796d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1797d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1798d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1799d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1800d382aafbSBarry Smith } else { 1801d382aafbSBarry Smith #endif 1802d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1803d382aafbSBarry Smith bzero((char *)a,n); 1804d382aafbSBarry Smith #else 1805d382aafbSBarry Smith memset((char*)a,0,n); 1806d382aafbSBarry Smith #endif 1807d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1808d382aafbSBarry Smith } 1809d382aafbSBarry Smith #endif 1810d382aafbSBarry Smith } 1811d382aafbSBarry Smith return 0; 1812d382aafbSBarry Smith } 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith /*MC 1815d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1816d382aafbSBarry Smith 1817eca87e8dSBarry Smith Synopsis: 1818eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1819eca87e8dSBarry Smith 1820d382aafbSBarry Smith Not Collective 1821d382aafbSBarry Smith 1822d382aafbSBarry Smith Input Parameters: 1823d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1824d382aafbSBarry Smith . n - number of elements to fetch 1825d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 182650d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1827d382aafbSBarry Smith 1828d382aafbSBarry Smith Level: developer 1829d382aafbSBarry Smith 1830d382aafbSBarry Smith Notes: 1831d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1832d382aafbSBarry Smith 183350d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 183450d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 183550d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 183663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 183763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 183863cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1839d382aafbSBarry Smith 1840d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1841d382aafbSBarry Smith address). 1842d382aafbSBarry Smith 1843d382aafbSBarry Smith Concepts: memory 1844d382aafbSBarry Smith M*/ 1845d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1846d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1847d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1848d382aafbSBarry Smith } while (0) 1849d382aafbSBarry Smith 1850d382aafbSBarry Smith /* 1851e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1852d382aafbSBarry Smith */ 18532c8e378dSBarry Smith #include <petscmatlab.h> 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith /* 1856d382aafbSBarry Smith Determine if some of the kernel computation routines use 1857d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1858d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1859d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1860e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1861d382aafbSBarry Smith */ 1862d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1863d382aafbSBarry Smith 1864d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1865d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1866d382aafbSBarry Smith #endif 1867d382aafbSBarry Smith 18685a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 18695a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1870d382aafbSBarry Smith #endif 1871d382aafbSBarry Smith 1872d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1873d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1874d382aafbSBarry Smith #endif 1875d382aafbSBarry Smith 1876d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1877d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1878d382aafbSBarry Smith #endif 1879d382aafbSBarry Smith 1880d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1881d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1882d382aafbSBarry Smith #endif 1883d382aafbSBarry Smith 1884d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1885d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1886d382aafbSBarry Smith #endif 1887d382aafbSBarry Smith 1888d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1889d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1890d382aafbSBarry Smith #endif 1891d382aafbSBarry Smith 1892d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1893d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1894d382aafbSBarry Smith #endif 1895d382aafbSBarry Smith 1896d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1897d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1898d382aafbSBarry Smith #endif 1899d382aafbSBarry Smith 1900d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1901d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1902d382aafbSBarry Smith #endif 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1905d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1906d382aafbSBarry Smith #endif 1907d382aafbSBarry Smith 1908d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1909d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1910d382aafbSBarry Smith #endif 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1913d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1914d382aafbSBarry Smith #endif 1915d382aafbSBarry Smith 1916d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1917d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1918d382aafbSBarry Smith #endif 1919d382aafbSBarry Smith 1920d382aafbSBarry Smith #endif 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith /* 1923d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1924d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1925d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1926d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1927d382aafbSBarry Smith ugly extern "C" {} wrappers. 1928d382aafbSBarry Smith */ 1929d382aafbSBarry Smith #if defined(__cplusplus) 1930014dd563SJed Brown #define PETSC_EXTERN_C extern "C" PETSC_VISIBILITY_PUBLIC 1931d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1932d382aafbSBarry Smith #define EXTERN_C_END } 1933d382aafbSBarry Smith #else 1934014dd563SJed Brown #define PETSC_EXTERN_C PETSC_EXTERN 1935d382aafbSBarry Smith #define EXTERN_C_BEGIN 1936d382aafbSBarry Smith #define EXTERN_C_END 1937d382aafbSBarry Smith #endif 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1940d382aafbSBarry Smith 1941d382aafbSBarry Smith /*MC 1942d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1943d382aafbSBarry Smith communication 1944d382aafbSBarry Smith 1945d382aafbSBarry Smith Level: beginner 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1948d382aafbSBarry Smith 1949d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1950d382aafbSBarry Smith M*/ 1951d382aafbSBarry Smith 1952d382aafbSBarry Smith /*MC 1953d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1954d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1955d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1956d382aafbSBarry Smith 1957d382aafbSBarry Smith 1958d382aafbSBarry Smith Level: beginner 1959d382aafbSBarry Smith 1960d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1961d382aafbSBarry Smith M*/ 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith /*MC 1964d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1965d382aafbSBarry Smith 1966d382aafbSBarry Smith Level: beginner 1967d382aafbSBarry Smith 1968d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1969d382aafbSBarry Smith M*/ 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith /*MC 1972d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1973d382aafbSBarry Smith Level: beginner 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 1976d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1977d382aafbSBarry Smith 1978d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 1979d382aafbSBarry Smith M*/ 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith /*MC 1982d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith Level: beginner 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 1987d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 1990d382aafbSBarry Smith M*/ 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith /*MC 1993d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 1994d382aafbSBarry Smith 1995d382aafbSBarry Smith Level: beginner 1996d382aafbSBarry Smith 1997d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 1998d382aafbSBarry Smith pass this value 1999d382aafbSBarry Smith 2000d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2001d382aafbSBarry Smith M*/ 2002d382aafbSBarry Smith 2003d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2004d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2005014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2006014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2007d382aafbSBarry Smith #else 2008d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2009d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2010d382aafbSBarry Smith #endif 2011d382aafbSBarry Smith #endif 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2014d382aafbSBarry Smith 2015d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2016d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2017d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2018d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2019d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2020d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2021d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2022d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2023d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2024d382aafbSBarry Smith 2025d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2026e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2027e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2028eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2029eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2030d382aafbSBarry Smith 2031d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2032e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2033eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2034d382aafbSBarry Smith #else 2035d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2036d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2037d382aafbSBarry Smith #endif 2038d382aafbSBarry Smith 2039d382aafbSBarry Smith #else 2040d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2041d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2042d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2043d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2044d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2045d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2046d382aafbSBarry Smith #endif 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith /* 20492981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2050d382aafbSBarry Smith */ 2051d382aafbSBarry Smith #if defined(hz) 2052d382aafbSBarry Smith #undef hz 2053d382aafbSBarry Smith #endif 2054d382aafbSBarry Smith 2055d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2056d382aafbSBarry Smith 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2059d382aafbSBarry Smith #include <limits.h> 2060d382aafbSBarry Smith #endif 2061d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2062d382aafbSBarry Smith #include <sys/param.h> 2063d382aafbSBarry Smith #endif 2064d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2065d382aafbSBarry Smith #include <sys/types.h> 2066d382aafbSBarry Smith #endif 2067d382aafbSBarry Smith #if defined(MAXPATHLEN) 2068d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2069d382aafbSBarry Smith #elif defined(MAX_PATH) 2070d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2071d382aafbSBarry Smith #elif defined(_MAX_PATH) 2072d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2073d382aafbSBarry Smith #else 2074d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2075d382aafbSBarry Smith #endif 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith /* Special support for C++ */ 20782c8e378dSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) 20792c8e378dSBarry Smith #include <petscsys.hh> 20802c8e378dSBarry Smith #endif 20816c7e564aSBarry Smith 2082d382aafbSBarry Smith /*MC 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2085d382aafbSBarry Smith 2086d382aafbSBarry Smith $ 1) classic Fortran 77 style 2087d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2088d382aafbSBarry Smith $ XXX variablename 2089d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2090d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2091d382aafbSBarry Smith $ 2092d382aafbSBarry Smith $ 2) classic Fortran 90 style 2093d1716517SSatish Balay $#include "finclude/petscXXX.h" 2094d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2095d382aafbSBarry Smith $ XXX variablename 2096d382aafbSBarry Smith $ 2097d382aafbSBarry Smith $ 3) Using Fortran modules 2098d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2099d382aafbSBarry Smith $ use petscXXXX 2100d382aafbSBarry Smith $ XXX variablename 2101d382aafbSBarry Smith $ 2102d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2103d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2104d382aafbSBarry Smith $ use petscXXXX 2105d382aafbSBarry Smith $ type(XXX) variablename 2106e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2107d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2110d382aafbSBarry Smith 2111d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2112d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2113d382aafbSBarry Smith $ integer variablename 2114d382aafbSBarry Smith $ 2115d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2116d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2117d382aafbSBarry Smith 2118d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2119d382aafbSBarry Smith for only a few PETSc functions. 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2122d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2123d382aafbSBarry Smith you cannot have something like 2124d382aafbSBarry Smith $ PetscInt row,col 2125d382aafbSBarry Smith $ PetscScalar val 2126d382aafbSBarry Smith $ ... 2127d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2128d382aafbSBarry Smith You must instead have 2129d382aafbSBarry Smith $ PetscInt row(1),col(1) 2130d382aafbSBarry Smith $ PetscScalar val(1) 2131d382aafbSBarry Smith $ ... 2132d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2133d382aafbSBarry Smith 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2136d382aafbSBarry Smith 2137d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2138d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2141d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2142d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2145e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2148d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2151d382aafbSBarry Smith automatically by "make allfortranstubs". 2152d382aafbSBarry Smith 2153e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2154d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2155d382aafbSBarry Smith include their predecessors 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith Level: beginner 2158d382aafbSBarry Smith 2159d382aafbSBarry Smith M*/ 2160d382aafbSBarry Smith 2161014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2162014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2163014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2164014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2166014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 216727710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2168d382aafbSBarry Smith 2169014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2170014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 217160e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2172014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2173014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2174014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2175014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 217617d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 217717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2178014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2179014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2180014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2181014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2182014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2183014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2184014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2185014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2186d382aafbSBarry Smith 2187014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2188014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2189d382aafbSBarry Smith 219076bdecfbSBarry Smith /*J 2191d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2192d382aafbSBarry Smith with an optional dynamic library name, for example 2193d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith Level: beginner 2196d382aafbSBarry Smith 2197e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2198d382aafbSBarry Smith with the option --download-sprng 2199d382aafbSBarry Smith 2200d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 220176bdecfbSBarry Smith J*/ 220219fd82e9SBarry Smith typedef const char* PetscRandomType; 2203d382aafbSBarry Smith #define PETSCRAND "rand" 2204d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2205d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith /* Logging support */ 2208014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2209d382aafbSBarry Smith 2210014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(const char[]); 2211d382aafbSBarry Smith 2212d382aafbSBarry Smith /*S 2213d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2214d382aafbSBarry Smith 2215d382aafbSBarry Smith Level: intermediate 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith Concepts: random numbers 2218d382aafbSBarry Smith 2219d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2220d382aafbSBarry Smith S*/ 2221d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2222d382aafbSBarry Smith 2223d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2224014dd563SJed Brown PETSC_EXTERN PetscFList PetscRandomList; 2225014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2226d382aafbSBarry Smith 2227014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(const char []); 2228014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 2229014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterDestroy(void); 223019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2231014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 223219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 22336d187b91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,const char[]); 2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2235d382aafbSBarry Smith 2236d382aafbSBarry Smith /*MC 2237d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2238d382aafbSBarry Smith 2239d382aafbSBarry Smith Synopsis: 22401890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2241d382aafbSBarry Smith 2242d382aafbSBarry Smith Not Collective 2243d382aafbSBarry Smith 2244d382aafbSBarry Smith Input Parameters: 2245d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2246d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2247d382aafbSBarry Smith . func_name - The name of routine to create method context 2248d382aafbSBarry Smith - create_func - The creation routine itself 2249d382aafbSBarry Smith 2250d382aafbSBarry Smith Notes: 2251d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2252d382aafbSBarry Smith 2253d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2254d382aafbSBarry Smith 2255d382aafbSBarry Smith Sample usage: 2256d382aafbSBarry Smith .vb 2257d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2258d382aafbSBarry Smith .ve 2259d382aafbSBarry Smith 2260d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2261d382aafbSBarry Smith .vb 2262d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2263d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2264d382aafbSBarry Smith .ve 2265d382aafbSBarry Smith or at runtime via the option 2266d382aafbSBarry Smith .vb 2267d382aafbSBarry Smith -random_type my_random_name 2268d382aafbSBarry Smith .ve 2269d382aafbSBarry Smith 2270d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2271d382aafbSBarry Smith 2272d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2273d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2274d382aafbSBarry Smith 2275d382aafbSBarry Smith Level: advanced 2276d382aafbSBarry Smith 2277d382aafbSBarry Smith .keywords: PetscRandom, register 2278d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2279d382aafbSBarry Smith M*/ 2280d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2281d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2282d382aafbSBarry Smith #else 2283d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2284d382aafbSBarry Smith #endif 2285d382aafbSBarry Smith 2286014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2287014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2288014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2289014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2290014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2291014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2292014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2293014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2294014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2295d382aafbSBarry Smith 2296014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2297014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2299014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2300014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2301014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2303d382aafbSBarry Smith 2304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2308014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2310014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpenSocket(char*,int,int*); 2316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2317d382aafbSBarry Smith 2318d382aafbSBarry Smith /* 2319d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2320d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2321d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2322d382aafbSBarry Smith PetscBinarySeek(). 2323d382aafbSBarry Smith */ 2324d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2325d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2326d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2327d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2328d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2329d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2330d382aafbSBarry Smith 2331d382aafbSBarry Smith /*E 2332d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2333d382aafbSBarry Smith 2334d382aafbSBarry Smith Level: advanced 2335d382aafbSBarry Smith 2336d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2337d382aafbSBarry Smith E*/ 2338d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2339014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2341014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2342d382aafbSBarry Smith 2343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2345014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2346014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2349d382aafbSBarry Smith 2350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2355d382aafbSBarry Smith 2356014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2357d382aafbSBarry Smith 2358d382aafbSBarry Smith /*E 2359d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2360d382aafbSBarry Smith 2361d382aafbSBarry Smith Level: beginner 2362d382aafbSBarry Smith 2363d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2364d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2365d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2366d382aafbSBarry Smith E*/ 23676fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2368d382aafbSBarry Smith 2369d382aafbSBarry Smith /*MC 2370d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2371d382aafbSBarry Smith 2372d382aafbSBarry Smith Level: beginner 2373d382aafbSBarry Smith 2374d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2375eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2376eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2377d382aafbSBarry Smith 2378d382aafbSBarry Smith M*/ 2379d382aafbSBarry Smith 2380d382aafbSBarry Smith /*MC 2381d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2382d382aafbSBarry Smith value into that location 2383d382aafbSBarry Smith 2384d382aafbSBarry Smith Level: beginner 2385d382aafbSBarry Smith 2386d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2387eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2388eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2389d382aafbSBarry Smith 2390d382aafbSBarry Smith M*/ 2391d382aafbSBarry Smith 2392d382aafbSBarry Smith /*MC 2393d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2394d382aafbSBarry Smith 2395d382aafbSBarry Smith Level: beginner 2396d382aafbSBarry Smith 2397d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2398d382aafbSBarry Smith 2399d382aafbSBarry Smith M*/ 2400d382aafbSBarry Smith 2401d382aafbSBarry Smith /*S 2402d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2403d382aafbSBarry Smith 2404d382aafbSBarry Smith Level: advanced 2405d382aafbSBarry Smith 2406d382aafbSBarry Smith Concepts: communicator, create 2407d382aafbSBarry Smith S*/ 2408d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2409d382aafbSBarry Smith 2410d382aafbSBarry Smith struct _n_PetscSubcomm { 2411d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2412d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2413d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2414d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2415d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2416d382aafbSBarry Smith }; 2417d382aafbSBarry Smith 2418638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 24196a6fc655SJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 2420638faf0bSHong Zhang 2421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 2425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2426d382aafbSBarry Smith 242782a7e548SBarry Smith #include <petscctable.h> 242882a7e548SBarry Smith 24296c7e564aSBarry Smith 24309e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24319e03d832SJed Brown #undef __FUNCT__ 24329e03d832SJed Brown #define __FUNCT__ "User provided function" 24339e03d832SJed Brown 2434cae2f346SBarry Smith 2435d382aafbSBarry Smith #endif 2436