xref: /petsc/include/petscsys.h (revision da861ed6b3d25c5a6f805a20bc5c7d285bf7fbed)
1d382aafbSBarry Smith /*
2d382aafbSBarry Smith    This is the main PETSc include file (for C and C++).  It is included by all
3d382aafbSBarry Smith    other PETSc include files, so it almost never has to be specifically included.
4d382aafbSBarry Smith */
56c7e564aSBarry Smith #if !defined(__PETSCSYS_H)
66c7e564aSBarry Smith #define __PETSCSYS_H
7d382aafbSBarry Smith /* ========================================================================== */
8d382aafbSBarry Smith /*
9d382aafbSBarry Smith    petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is
10d382aafbSBarry Smith    found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include
11d382aafbSBarry Smith    in the conf/variables definition of PETSC_INCLUDE
12d382aafbSBarry Smith */
13d382aafbSBarry Smith #include "petscconf.h"
14d382aafbSBarry Smith #include "petscfix.h"
15d382aafbSBarry Smith 
1673fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS)
1773fca5a0SBarry Smith /*
1873fca5a0SBarry Smith    Feature test macros must be included before headers defined by IEEE Std 1003.1-2001
1973fca5a0SBarry Smith    We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS
2073fca5a0SBarry Smith */
2173fca5a0SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L)
2273fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L
2373fca5a0SBarry Smith #endif
2473fca5a0SBarry Smith #if defined(PETSC__BSD_SOURCE)
2573fca5a0SBarry Smith #define _BSD_SOURCE
2673fca5a0SBarry Smith #endif
2773fca5a0SBarry Smith #endif
2873fca5a0SBarry Smith 
29d382aafbSBarry Smith /* ========================================================================== */
30d382aafbSBarry Smith /*
31d382aafbSBarry Smith    This facilitates using C version of PETSc from C++ and
32e2e64c6bSBarry Smith    C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter)
33d382aafbSBarry Smith */
34d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus)
35d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler"
36d382aafbSBarry Smith #endif
371ec50b02SJed Brown 
381ec50b02SJed Brown #if defined(__cplusplus)
391ec50b02SJed Brown #  define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX
401ec50b02SJed Brown #else
411ec50b02SJed Brown #  define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C
421ec50b02SJed Brown #endif
43d382aafbSBarry Smith 
44d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus)
45da861ed6SJed Brown #define PETSC_EXTERN extern "C"
46d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" {
47d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END  }
48d382aafbSBarry Smith #else
49da861ed6SJed Brown #define PETSC_EXTERN extern
50d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN
51d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END
52d382aafbSBarry Smith #endif
53d382aafbSBarry Smith /* ========================================================================== */
54d382aafbSBarry Smith /*
55d382aafbSBarry Smith    Current PETSc version number and release date. Also listed in
56d382aafbSBarry Smith     Web page
57d382aafbSBarry Smith     src/docs/tex/manual/intro.tex,
58d382aafbSBarry Smith     src/docs/tex/manual/manual.tex.
59d382aafbSBarry Smith     src/docs/website/index.html.
60d382aafbSBarry Smith */
61d382aafbSBarry Smith #include "petscversion.h"
62301d30feSBarry Smith #define PETSC_AUTHOR_INFO        "       The PETSc Team\n    petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n"
63d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1)
64301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \
65d382aafbSBarry Smith                                          PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \
66301d30feSBarry Smith 					 PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE)
67d382aafbSBarry Smith #else
68301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s  HG Date: %s", \
69301d30feSBarry Smith                                         PETSC_VERSION_HG, PETSC_VERSION_DATE_HG)
70d382aafbSBarry Smith #endif
71d382aafbSBarry Smith 
72d382aafbSBarry Smith /*MC
73d382aafbSBarry Smith     PetscGetVersion - Gets the PETSc version information in a string.
74d382aafbSBarry Smith 
75d382aafbSBarry Smith     Input Parameter:
76d382aafbSBarry Smith .   len - length of the string
77d382aafbSBarry Smith 
78d382aafbSBarry Smith     Output Parameter:
79d382aafbSBarry Smith .   version - version string
80d382aafbSBarry Smith 
81d382aafbSBarry Smith     Level: developer
82d382aafbSBarry Smith 
83d382aafbSBarry Smith     Usage:
84d382aafbSBarry Smith     char version[256];
85d382aafbSBarry Smith     ierr = PetscGetVersion(version,256);CHKERRQ(ierr)
86d382aafbSBarry Smith 
87d382aafbSBarry Smith     Fortran Note:
88d382aafbSBarry Smith     This routine is not supported in Fortran.
89d382aafbSBarry Smith 
90d382aafbSBarry Smith .seealso: PetscGetProgramName()
91d382aafbSBarry Smith 
92d382aafbSBarry Smith M*/
93d382aafbSBarry Smith 
94d382aafbSBarry Smith /* ========================================================================== */
95d382aafbSBarry Smith 
96d382aafbSBarry Smith /*
97d382aafbSBarry Smith     Defines the interface to MPI allowing the use of all MPI functions.
98d382aafbSBarry Smith 
99d382aafbSBarry Smith     PETSc does not use the C++ binding of MPI at ALL. The following flag
100d382aafbSBarry Smith     makes sure the C++ bindings are not included. The C++ bindings REQUIRE
101d382aafbSBarry Smith     putting mpi.h before ANY C++ include files, we cannot control this
102d382aafbSBarry Smith     with all PETSc users. Users who want to use the MPI C++ bindings can include
103d382aafbSBarry Smith     mpicxx.h directly in their code
104d382aafbSBarry Smith */
105d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1
106d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1
107d382aafbSBarry Smith #include "mpi.h"
10865013866SBarry Smith 
109d382aafbSBarry Smith /*
110d382aafbSBarry Smith     Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler
111d382aafbSBarry Smith     see the top of mpicxx.h in the MPICH2 distribution.
112d382aafbSBarry Smith 
113d382aafbSBarry Smith     The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense.
114d382aafbSBarry Smith */
115d382aafbSBarry Smith #include <stdio.h>
116d382aafbSBarry Smith 
117d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */
118d382aafbSBarry Smith #if !defined(MPIAPI)
119d382aafbSBarry Smith #define MPIAPI
120d382aafbSBarry Smith #endif
121d382aafbSBarry Smith 
122b3506946SBarry Smith 
123d382aafbSBarry Smith /*MC
124d382aafbSBarry Smith     PetscErrorCode - datatype used for return error code from all PETSc functions
125d382aafbSBarry Smith 
126d382aafbSBarry Smith     Level: beginner
127d382aafbSBarry Smith 
128d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ
129d382aafbSBarry Smith M*/
130d382aafbSBarry Smith typedef int PetscErrorCode;
131d382aafbSBarry Smith 
132d382aafbSBarry Smith /*MC
133d382aafbSBarry Smith 
134503cfb0cSBarry Smith     PetscClassId - A unique id used to identify each PETSc class.
135d382aafbSBarry Smith          (internal integer in the data structure used for error
136d382aafbSBarry Smith          checking). These are all defined by an offset from the lowest
1370700a824SBarry Smith          one, PETSC_SMALLEST_CLASSID.
138d382aafbSBarry Smith 
139d382aafbSBarry Smith     Level: advanced
140d382aafbSBarry Smith 
1410700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate()
142d382aafbSBarry Smith M*/
1430700a824SBarry Smith typedef int PetscClassId;
144d382aafbSBarry Smith 
145d382aafbSBarry Smith 
146d382aafbSBarry Smith /*MC
147d382aafbSBarry Smith     PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions.
148d382aafbSBarry Smith 
149d382aafbSBarry Smith     Level: intermediate
150d382aafbSBarry Smith 
151d382aafbSBarry Smith     Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but
1523b2a8c54SBarry Smith            standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit
153287e6e24SBarry Smith            (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below).
1543b2a8c54SBarry Smith 
1553b2a8c54SBarry Smith     PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a
1563b2a8c54SBarry Smith       PETSC_ERR_ARG_OUTOFRANGE.
1573b2a8c54SBarry Smith 
1583b2a8c54SBarry Smith     PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it
1593b2a8c54SBarry Smith       generates a PETSC_ERR_ARG_OUTOFRANGE
160d382aafbSBarry Smith 
161287e6e24SBarry Smith     Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc,
162287e6e24SBarry Smith      if you run ./configure with the option
163287e6e24SBarry Smith      --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib]
164287e6e24SBarry Smith      for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can
165287e6e24SBarry Smith      purchase a 64 bit integer version of the MKL and use that with a  PetscBLASInt of long int.
166287e6e24SBarry Smith 
167287e6e24SBarry Smith      External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot
168287e6e24SBarry Smith      be used with PETSc if you have set PetscBLASInt to long int.
169287e6e24SBarry Smith 
170d382aafbSBarry Smith .seealso: PetscMPIInt, PetscInt
171d382aafbSBarry Smith 
172d382aafbSBarry Smith M*/
173d382aafbSBarry Smith typedef int PetscBLASInt;
174d382aafbSBarry Smith 
175d382aafbSBarry Smith /*MC
176d382aafbSBarry Smith     PetscMPIInt - datatype used to represent 'int' parameters to MPI functions.
177d382aafbSBarry Smith 
178d382aafbSBarry Smith     Level: intermediate
179d382aafbSBarry Smith 
180d382aafbSBarry Smith     Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but
1813b2a8c54SBarry Smith            standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit
182d382aafbSBarry Smith 
1833b2a8c54SBarry Smith     PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a
184d382aafbSBarry Smith       PETSC_ERR_ARG_OUTOFRANGE.
185d382aafbSBarry Smith 
1863b2a8c54SBarry Smith     PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it
187d382aafbSBarry Smith       generates a PETSC_ERR_ARG_OUTOFRANGE
188d382aafbSBarry Smith 
189d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt
190d382aafbSBarry Smith 
191d382aafbSBarry Smith M*/
192d382aafbSBarry Smith typedef int PetscMPIInt;
193d382aafbSBarry Smith 
194d382aafbSBarry Smith /*MC
195d382aafbSBarry Smith     PetscEnum - datatype used to pass enum types within PETSc functions.
196d382aafbSBarry Smith 
197d382aafbSBarry Smith     Level: intermediate
198d382aafbSBarry Smith 
199d382aafbSBarry Smith     PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a
200d382aafbSBarry Smith       PETSC_ERR_ARG_OUTOFRANGE.
201d382aafbSBarry Smith 
202d382aafbSBarry Smith     PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it
203d382aafbSBarry Smith       generates a PETSC_ERR_ARG_OUTOFRANGE
204d382aafbSBarry Smith 
205d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum()
206d382aafbSBarry Smith M*/
207d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum;
208d382aafbSBarry Smith 
209d382aafbSBarry Smith /*MC
210d382aafbSBarry Smith     PetscInt - PETSc type that represents integer - used primarily to
2113b2a8c54SBarry Smith       represent size of arrays and indexing into arrays. Its size can be configured with the option
212d382aafbSBarry Smith       --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints]
213d382aafbSBarry Smith 
214d382aafbSBarry Smith    Level: intermediate
215d382aafbSBarry Smith 
216d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt
217d382aafbSBarry Smith M*/
218236ed0a3SSatish Balay #if defined(PETSC_HAVE___INT64)
219236ed0a3SSatish Balay typedef __int64 Petsc64bitInt;
220236ed0a3SSatish Balay #else
221236ed0a3SSatish Balay typedef long long Petsc64bitInt;
222236ed0a3SSatish Balay #endif
223d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES)
224236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt;
225d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT
226d382aafbSBarry Smith #else
227d382aafbSBarry Smith typedef int PetscInt;
228d382aafbSBarry Smith #define MPIU_INT MPI_INT
229d382aafbSBarry Smith #endif
230236ed0a3SSatish Balay 
231d382aafbSBarry Smith 
23258b60935SBarry Smith /*EC
23358b60935SBarry Smith 
23458b60935SBarry Smith     PetscPrecision - indicates what precision the object is using
23558b60935SBarry Smith 
23658b60935SBarry Smith     Level: advanced
23758b60935SBarry Smith 
23858b60935SBarry Smith .seealso: PetscObjectSetPrecision()
23958b60935SBarry Smith E*/
24058b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision;
24158b60935SBarry Smith extern const char *PetscPrecisions[];
24258b60935SBarry Smith 
24358b60935SBarry Smith 
244503cfb0cSBarry Smith /*
245503cfb0cSBarry Smith     For the rare cases when one needs to send a size_t object with MPI
246503cfb0cSBarry Smith */
247d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT)
248d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT
249d382aafbSBarry Smith #elif  (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG)
250d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG
251d382aafbSBarry Smith #elif  (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG)
252d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT
253d382aafbSBarry Smith #else
254d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov"
255d382aafbSBarry Smith #endif
256d382aafbSBarry Smith 
257d382aafbSBarry Smith 
258d382aafbSBarry Smith /*
259d382aafbSBarry Smith       You can use PETSC_STDOUT as a replacement of stdout. You can also change
260d382aafbSBarry Smith     the value of PETSC_STDOUT to redirect all standard output elsewhere
261d382aafbSBarry Smith */
262d382aafbSBarry Smith 
263d382aafbSBarry Smith extern FILE* PETSC_STDOUT;
264d382aafbSBarry Smith 
265d382aafbSBarry Smith /*
266d382aafbSBarry Smith       You can use PETSC_STDERR as a replacement of stderr. You can also change
267d382aafbSBarry Smith     the value of PETSC_STDERR to redirect all standard error elsewhere
268d382aafbSBarry Smith */
269d382aafbSBarry Smith extern FILE* PETSC_STDERR;
270d382aafbSBarry Smith 
271d382aafbSBarry Smith /*
272d382aafbSBarry Smith       PETSC_ZOPEFD is used to send data to the PETSc webpage.  It can be used
273d382aafbSBarry Smith     in conjunction with PETSC_STDOUT, or by itself.
274d382aafbSBarry Smith */
275d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD;
276d382aafbSBarry Smith 
277d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus)
278d382aafbSBarry Smith /*MC
279d382aafbSBarry Smith       PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of
280d382aafbSBarry Smith             a PETSc function that remove certain optional arguments for a simplier user interface
281d382aafbSBarry Smith 
282d382aafbSBarry Smith    Synopsis:
283d382aafbSBarry Smith    PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function))
284d382aafbSBarry Smith 
285eca87e8dSBarry Smith      Not collective
286eca87e8dSBarry Smith 
287d382aafbSBarry Smith    Level: developer
288d382aafbSBarry Smith 
289d382aafbSBarry Smith     Example:
290d382aafbSBarry Smith       PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine
291d382aafbSBarry Smith            PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r)
292d382aafbSBarry Smith 
293d382aafbSBarry Smith .seealso: PetscPolymorphicFunction()
294d382aafbSBarry Smith 
295d382aafbSBarry Smith M*/
296d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;}
297d382aafbSBarry Smith 
298d382aafbSBarry Smith /*MC
299d382aafbSBarry Smith       PetscPolymorphicScalar - allows defining a C++ polymorphic version of
300d382aafbSBarry Smith             a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument
301d382aafbSBarry Smith 
302d382aafbSBarry Smith    Synopsis:
303d382aafbSBarry Smith    PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function))
304d382aafbSBarry Smith 
305eca87e8dSBarry Smith    Not collective
306eca87e8dSBarry Smith 
307d382aafbSBarry Smith    Level: developer
308d382aafbSBarry Smith 
309d382aafbSBarry Smith     Example:
310d382aafbSBarry Smith       PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine
311d382aafbSBarry Smith            PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);}
312d382aafbSBarry Smith 
313d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine()
314d382aafbSBarry Smith 
315d382aafbSBarry Smith M*/
316d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;}
317d382aafbSBarry Smith 
318d382aafbSBarry Smith /*MC
319d382aafbSBarry Smith       PetscPolymorphicFunction - allows defining a C++ polymorphic version of
320d382aafbSBarry Smith             a PETSc function that remove certain optional arguments for a simplier user interface
321d382aafbSBarry Smith             and returns the computed value (istead of an error code)
322d382aafbSBarry Smith 
323d382aafbSBarry Smith    Synopsis:
324d382aafbSBarry Smith    PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name)
325d382aafbSBarry Smith 
326eca87e8dSBarry Smith      Not collective
327eca87e8dSBarry Smith 
328d382aafbSBarry Smith    Level: developer
329d382aafbSBarry Smith 
330d382aafbSBarry Smith     Example:
331d382aafbSBarry Smith       PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine
332d382aafbSBarry Smith          PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;}
333d382aafbSBarry Smith 
334d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine()
335d382aafbSBarry Smith 
336d382aafbSBarry Smith M*/
337d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;}
338d382aafbSBarry Smith 
339d382aafbSBarry Smith #else
340d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C)
341d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C)
342d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E)
343d382aafbSBarry Smith #endif
344d382aafbSBarry Smith 
345d382aafbSBarry Smith /*MC
346d382aafbSBarry Smith     PetscUnlikely - hints the compiler that the given condition is usually FALSE
347d382aafbSBarry Smith 
348d382aafbSBarry Smith     Synopsis:
349ace3abfcSBarry Smith     PetscBool  PetscUnlikely(PetscBool  cond)
350d382aafbSBarry Smith 
351eca87e8dSBarry Smith     Not Collective
352eca87e8dSBarry Smith 
353d382aafbSBarry Smith     Input Parameters:
354d382aafbSBarry Smith .   cond - condition or expression
355d382aafbSBarry Smith 
356d382aafbSBarry Smith     Note: This returns the same truth value, it is only a hint to compilers that the resulting
357d382aafbSBarry Smith     branch is unlikely.
358d382aafbSBarry Smith 
359d382aafbSBarry Smith     Level: advanced
360d382aafbSBarry Smith 
361d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ
362d382aafbSBarry Smith M*/
363d382aafbSBarry Smith 
364d382aafbSBarry Smith /*MC
365d382aafbSBarry Smith     PetscLikely - hints the compiler that the given condition is usually TRUE
366d382aafbSBarry Smith 
367d382aafbSBarry Smith     Synopsis:
368ace3abfcSBarry Smith     PetscBool  PetscUnlikely(PetscBool  cond)
369d382aafbSBarry Smith 
370eca87e8dSBarry Smith     Not Collective
371eca87e8dSBarry Smith 
372d382aafbSBarry Smith     Input Parameters:
373d382aafbSBarry Smith .   cond - condition or expression
374d382aafbSBarry Smith 
375d382aafbSBarry Smith     Note: This returns the same truth value, it is only a hint to compilers that the resulting
376d382aafbSBarry Smith     branch is likely.
377d382aafbSBarry Smith 
378d382aafbSBarry Smith     Level: advanced
379d382aafbSBarry Smith 
380d382aafbSBarry Smith .seealso: PetscUnlikely()
381d382aafbSBarry Smith M*/
382d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT)
383d382aafbSBarry Smith #  define PetscUnlikely(cond)   __builtin_expect(!!(cond),0)
384d382aafbSBarry Smith #  define PetscLikely(cond)     __builtin_expect(!!(cond),1)
385d382aafbSBarry Smith #else
386cd3f4ce9SJed Brown #  define PetscUnlikely(cond)   (cond)
387cd3f4ce9SJed Brown #  define PetscLikely(cond)     (cond)
388d382aafbSBarry Smith #endif
389d382aafbSBarry Smith 
390d382aafbSBarry Smith /*
391d382aafbSBarry Smith     Defines some elementary mathematics functions and constants.
392d382aafbSBarry Smith */
393d382aafbSBarry Smith #include "petscmath.h"
394d382aafbSBarry Smith 
395d382aafbSBarry Smith /*
396d382aafbSBarry Smith     Declare extern C stuff after including external header files
397d382aafbSBarry Smith */
398d382aafbSBarry Smith 
399d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN
400d382aafbSBarry Smith 
401d382aafbSBarry Smith /*
402d382aafbSBarry Smith        Basic PETSc constants
403d382aafbSBarry Smith */
404d382aafbSBarry Smith 
405d382aafbSBarry Smith /*E
406ace3abfcSBarry Smith     PetscBool  - Logical variable. Actually an int in C and a logical in Fortran.
407d382aafbSBarry Smith 
408d382aafbSBarry Smith    Level: beginner
409d382aafbSBarry Smith 
410ace3abfcSBarry Smith    Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for
41134e82e7dSBarry Smith       boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms.
41234e82e7dSBarry Smith 
413d382aafbSBarry Smith E*/
414ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool;
415ace3abfcSBarry Smith extern const char *PetscBools[];
41670b3c8c7SBarry Smith 
41770b3c8c7SBarry Smith /*E
41870b3c8c7SBarry Smith     PetscCopyMode  - Determines how an array passed to certain functions is copied or retained
41970b3c8c7SBarry Smith 
42070b3c8c7SBarry Smith    Level: beginner
42170b3c8c7SBarry Smith 
42270b3c8c7SBarry Smith $   PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array
42370b3c8c7SBarry Smith $   PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or
42470b3c8c7SBarry Smith $                       delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran.
42570b3c8c7SBarry Smith $   PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use
42670b3c8c7SBarry Smith                         the array but the user must delete the array after the object is destroyed.
42770b3c8c7SBarry Smith 
42870b3c8c7SBarry Smith E*/
42970b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode;
43070b3c8c7SBarry Smith extern const char *PetscCopyModes[];
431d382aafbSBarry Smith 
432d382aafbSBarry Smith /*MC
433ace3abfcSBarry Smith     PETSC_FALSE - False value of PetscBool
434d382aafbSBarry Smith 
435d382aafbSBarry Smith     Level: beginner
436d382aafbSBarry Smith 
437d382aafbSBarry Smith     Note: Zero integer
438d382aafbSBarry Smith 
439ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE
440d382aafbSBarry Smith M*/
441d382aafbSBarry Smith 
442d382aafbSBarry Smith /*MC
443ace3abfcSBarry Smith     PETSC_TRUE - True value of PetscBool
444d382aafbSBarry Smith 
445d382aafbSBarry Smith     Level: beginner
446d382aafbSBarry Smith 
447d382aafbSBarry Smith     Note: Nonzero integer
448d382aafbSBarry Smith 
449ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE
450d382aafbSBarry Smith M*/
451d382aafbSBarry Smith 
452d382aafbSBarry Smith /*MC
453d382aafbSBarry Smith     PETSC_NULL - standard way of passing in a null or array or pointer
454d382aafbSBarry Smith 
455d382aafbSBarry Smith    Level: beginner
456d382aafbSBarry Smith 
457d382aafbSBarry Smith    Notes: accepted by many PETSc functions to not set a parameter and instead use
458d382aafbSBarry Smith           some default
459d382aafbSBarry Smith 
460d382aafbSBarry Smith           This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER,
461503cfb0cSBarry Smith           PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc
462d382aafbSBarry Smith 
46334e82e7dSBarry Smith   Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under
46434e82e7dSBarry Smith       different versions of Unix. It is tricky to insure the correct include file is always included.
46534e82e7dSBarry Smith 
466d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE
467d382aafbSBarry Smith 
468d382aafbSBarry Smith M*/
469d382aafbSBarry Smith #define PETSC_NULL           0
470d382aafbSBarry Smith 
471d382aafbSBarry Smith /*MC
472d382aafbSBarry Smith     PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument
473d382aafbSBarry Smith 
474d382aafbSBarry Smith    Level: beginner
475d382aafbSBarry Smith 
476d382aafbSBarry Smith    Note: accepted by many PETSc functions to not set a parameter and instead use
477d382aafbSBarry Smith           some default
478d382aafbSBarry Smith 
479d382aafbSBarry Smith    Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER,
480d382aafbSBarry Smith           PETSC_NULL_DOUBLE_PRECISION etc
481d382aafbSBarry Smith 
482d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE
483d382aafbSBarry Smith 
484d382aafbSBarry Smith M*/
485d382aafbSBarry Smith #define PETSC_IGNORE         PETSC_NULL
486d382aafbSBarry Smith 
487d382aafbSBarry Smith /*MC
488557d4da8SBarry Smith     PETSC_DECIDE - standard way of passing in integer or floating point parameter
489557d4da8SBarry Smith        where you wish PETSc to use the default.
490557d4da8SBarry Smith 
491557d4da8SBarry Smith    Level: beginner
492557d4da8SBarry Smith 
493557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE
494557d4da8SBarry Smith 
495557d4da8SBarry Smith M*/
496557d4da8SBarry Smith #define PETSC_DECIDE  -1
497557d4da8SBarry Smith 
498557d4da8SBarry Smith /*MC
499d382aafbSBarry Smith     PETSC_DETERMINE - standard way of passing in integer or floating point parameter
500d382aafbSBarry Smith        where you wish PETSc to compute the required value.
501d382aafbSBarry Smith 
502d382aafbSBarry Smith    Level: beginner
503d382aafbSBarry Smith 
504557d4da8SBarry Smith 
505557d4da8SBarry Smith    Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for
506557d4da8SBarry Smith      some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value.
507557d4da8SBarry Smith 
508d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes()
509d382aafbSBarry Smith 
510d382aafbSBarry Smith M*/
511d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE
512d382aafbSBarry Smith 
513d382aafbSBarry Smith /*MC
514557d4da8SBarry Smith     PETSC_DEFAULT - standard way of passing in integer or floating point parameter
515557d4da8SBarry Smith        where you wish PETSc to use the default.
516557d4da8SBarry Smith 
517557d4da8SBarry Smith    Level: beginner
518557d4da8SBarry Smith 
519557d4da8SBarry Smith    Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION.
520557d4da8SBarry Smith 
521557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE
522557d4da8SBarry Smith 
523557d4da8SBarry Smith M*/
524557d4da8SBarry Smith #define PETSC_DEFAULT  -2
525557d4da8SBarry Smith 
526557d4da8SBarry Smith /*MC
527d382aafbSBarry Smith     PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents
528d382aafbSBarry Smith            all the processs that PETSc knows about.
529d382aafbSBarry Smith 
530d382aafbSBarry Smith    Level: beginner
531d382aafbSBarry Smith 
532d382aafbSBarry Smith    Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to
533d382aafbSBarry Smith           run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller)
534d382aafbSBarry Smith           communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling
535d382aafbSBarry Smith           PetscInitialize()
536d382aafbSBarry Smith 
537d382aafbSBarry Smith .seealso: PETSC_COMM_SELF
538d382aafbSBarry Smith 
539d382aafbSBarry Smith M*/
540d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD;
541d382aafbSBarry Smith 
542d382aafbSBarry Smith /*MC
543503cfb0cSBarry Smith     PETSC_COMM_SELF - This is always MPI_COMM_SELF
544d382aafbSBarry Smith 
545d382aafbSBarry Smith    Level: beginner
546d382aafbSBarry Smith 
547d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD
548d382aafbSBarry Smith 
549d382aafbSBarry Smith M*/
550d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF
551d382aafbSBarry Smith 
5527087cfbeSBarry Smith extern  PetscBool  PetscInitializeCalled;
5537087cfbeSBarry Smith extern  PetscBool  PetscFinalizeCalled;
5540fad1ec9SSatish Balay extern PetscBool   synchronizeCUSP;
555d382aafbSBarry Smith 
5567087cfbeSBarry Smith extern PetscErrorCode  PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm));
5577087cfbeSBarry Smith extern PetscErrorCode  PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*);
5587087cfbeSBarry Smith extern PetscErrorCode  PetscCommDestroy(MPI_Comm*);
559d382aafbSBarry Smith 
560d382aafbSBarry Smith /*MC
561d382aafbSBarry Smith    PetscMalloc - Allocates memory
562d382aafbSBarry Smith 
563eca87e8dSBarry Smith    Synopsis:
564eca87e8dSBarry Smith    PetscErrorCode PetscMalloc(size_t m,void **result)
565eca87e8dSBarry Smith 
566eca87e8dSBarry Smith    Not Collective
567eca87e8dSBarry Smith 
568d382aafbSBarry Smith    Input Parameter:
569d382aafbSBarry Smith .  m - number of bytes to allocate
570d382aafbSBarry Smith 
571d382aafbSBarry Smith    Output Parameter:
572d382aafbSBarry Smith .  result - memory allocated
573d382aafbSBarry Smith 
574d382aafbSBarry Smith    Level: beginner
575d382aafbSBarry Smith 
576d382aafbSBarry Smith    Notes: Memory is always allocated at least double aligned
577d382aafbSBarry Smith 
578d382aafbSBarry Smith           If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will
579d382aafbSBarry Smith           properly handle not freeing the null pointer.
580d382aafbSBarry Smith 
581d382aafbSBarry Smith .seealso: PetscFree(), PetscNew()
582d382aafbSBarry Smith 
583d382aafbSBarry Smith   Concepts: memory allocation
584d382aafbSBarry Smith 
585d382aafbSBarry Smith M*/
5862714b66aSJed Brown #define PetscMalloc(a,b)  ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) )
587d382aafbSBarry Smith 
588d382aafbSBarry Smith /*MC
589503cfb0cSBarry Smith    PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment
590d382aafbSBarry Smith 
591d382aafbSBarry Smith    Synopsis:
592d382aafbSBarry Smith    void *PetscAddrAlign(void *addr)
593d382aafbSBarry Smith 
594eca87e8dSBarry Smith    Not Collective
595eca87e8dSBarry Smith 
596eca87e8dSBarry Smith    Input Parameters:
597eca87e8dSBarry Smith .  addr - address to align (any pointer type)
598eca87e8dSBarry Smith 
599d382aafbSBarry Smith    Level: developer
600d382aafbSBarry Smith 
601d382aafbSBarry Smith .seealso: PetscMallocAlign()
602d382aafbSBarry Smith 
603d382aafbSBarry Smith   Concepts: memory allocation
604d382aafbSBarry Smith M*/
605d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1))
606d382aafbSBarry Smith 
607d382aafbSBarry Smith /*MC
608503cfb0cSBarry Smith    PetscMalloc2 - Allocates 2 chunks of  memory both aligned to PETSC_MEMALIGN
609d382aafbSBarry Smith 
610eca87e8dSBarry Smith    Synopsis:
611eca87e8dSBarry Smith    PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2)
612eca87e8dSBarry Smith 
613eca87e8dSBarry Smith    Not Collective
614eca87e8dSBarry Smith 
615d382aafbSBarry Smith    Input Parameter:
616d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
617d382aafbSBarry Smith .  t1 - type of first memory elements
618d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
619d382aafbSBarry Smith -  t2 - type of second memory elements
620d382aafbSBarry Smith 
621d382aafbSBarry Smith    Output Parameter:
622d382aafbSBarry Smith +  r1 - memory allocated in first chunk
623d382aafbSBarry Smith -  r2 - memory allocated in second chunk
624d382aafbSBarry Smith 
625d382aafbSBarry Smith    Level: developer
626d382aafbSBarry Smith 
627d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc()
628d382aafbSBarry Smith 
629d382aafbSBarry Smith   Concepts: memory allocation
630d382aafbSBarry Smith 
631d382aafbSBarry Smith M*/
632d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
633d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2))
634d382aafbSBarry Smith #else
6353b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \
636d382aafbSBarry Smith                                          || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0))
637d382aafbSBarry Smith #endif
638d382aafbSBarry Smith 
639d382aafbSBarry Smith /*MC
640503cfb0cSBarry Smith    PetscMalloc3 - Allocates 3 chunks of  memory  all aligned to PETSC_MEMALIGN
641d382aafbSBarry Smith 
642eca87e8dSBarry Smith    Synopsis:
643eca87e8dSBarry Smith    PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3)
644eca87e8dSBarry Smith 
645eca87e8dSBarry Smith    Not Collective
646eca87e8dSBarry Smith 
647d382aafbSBarry Smith    Input Parameter:
648d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
649d382aafbSBarry Smith .  t1 - type of first memory elements
650d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
651d382aafbSBarry Smith .  t2 - type of second memory elements
652d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
653d382aafbSBarry Smith -  t3 - type of third memory elements
654d382aafbSBarry Smith 
655d382aafbSBarry Smith    Output Parameter:
656d382aafbSBarry Smith +  r1 - memory allocated in first chunk
657d382aafbSBarry Smith .  r2 - memory allocated in second chunk
658d382aafbSBarry Smith -  r3 - memory allocated in third chunk
659d382aafbSBarry Smith 
660d382aafbSBarry Smith    Level: developer
661d382aafbSBarry Smith 
662d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3()
663d382aafbSBarry Smith 
664d382aafbSBarry Smith   Concepts: memory allocation
665d382aafbSBarry Smith 
666d382aafbSBarry Smith M*/
667d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
668d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3))
669d382aafbSBarry Smith #else
6703b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \
671d382aafbSBarry Smith                                                   || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0))
672d382aafbSBarry Smith #endif
673d382aafbSBarry Smith 
674d382aafbSBarry Smith /*MC
675503cfb0cSBarry Smith    PetscMalloc4 - Allocates 4 chunks of  memory  all aligned to PETSC_MEMALIGN
676d382aafbSBarry Smith 
677eca87e8dSBarry Smith    Synopsis:
678eca87e8dSBarry Smith    PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4)
679eca87e8dSBarry Smith 
680eca87e8dSBarry Smith    Not Collective
681eca87e8dSBarry Smith 
682d382aafbSBarry Smith    Input Parameter:
683d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
684d382aafbSBarry Smith .  t1 - type of first memory elements
685d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
686d382aafbSBarry Smith .  t2 - type of second memory elements
687d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
688d382aafbSBarry Smith .  t3 - type of third memory elements
689d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
690d382aafbSBarry Smith -  t4 - type of fourth memory elements
691d382aafbSBarry Smith 
692d382aafbSBarry Smith    Output Parameter:
693d382aafbSBarry Smith +  r1 - memory allocated in first chunk
694d382aafbSBarry Smith .  r2 - memory allocated in second chunk
695d382aafbSBarry Smith .  r3 - memory allocated in third chunk
696d382aafbSBarry Smith -  r4 - memory allocated in fourth chunk
697d382aafbSBarry Smith 
698d382aafbSBarry Smith    Level: developer
699d382aafbSBarry Smith 
700d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4()
701d382aafbSBarry Smith 
702d382aafbSBarry Smith   Concepts: memory allocation
703d382aafbSBarry Smith 
704d382aafbSBarry Smith M*/
705d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
706d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4))
707d382aafbSBarry Smith #else
708d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4)               \
7093b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \
710d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0))
711d382aafbSBarry Smith #endif
712d382aafbSBarry Smith 
713d382aafbSBarry Smith /*MC
714503cfb0cSBarry Smith    PetscMalloc5 - Allocates 5 chunks of  memory all aligned to PETSC_MEMALIGN
715d382aafbSBarry Smith 
716eca87e8dSBarry Smith    Synopsis:
717eca87e8dSBarry Smith    PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5)
718eca87e8dSBarry Smith 
719eca87e8dSBarry Smith    Not Collective
720eca87e8dSBarry Smith 
721d382aafbSBarry Smith    Input Parameter:
722d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
723d382aafbSBarry Smith .  t1 - type of first memory elements
724d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
725d382aafbSBarry Smith .  t2 - type of second memory elements
726d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
727d382aafbSBarry Smith .  t3 - type of third memory elements
728d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
729d382aafbSBarry Smith .  t4 - type of fourth memory elements
730d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
731d382aafbSBarry Smith -  t5 - type of fifth memory elements
732d382aafbSBarry Smith 
733d382aafbSBarry Smith    Output Parameter:
734d382aafbSBarry Smith +  r1 - memory allocated in first chunk
735d382aafbSBarry Smith .  r2 - memory allocated in second chunk
736d382aafbSBarry Smith .  r3 - memory allocated in third chunk
737d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
738d382aafbSBarry Smith -  r5 - memory allocated in fifth chunk
739d382aafbSBarry Smith 
740d382aafbSBarry Smith    Level: developer
741d382aafbSBarry Smith 
742d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5()
743d382aafbSBarry Smith 
744d382aafbSBarry Smith   Concepts: memory allocation
745d382aafbSBarry Smith 
746d382aafbSBarry Smith M*/
747d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
748d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5))
749d382aafbSBarry Smith #else
750d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5)      \
7513b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \
752d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0))
753d382aafbSBarry Smith #endif
754d382aafbSBarry Smith 
755d382aafbSBarry Smith 
756d382aafbSBarry Smith /*MC
757503cfb0cSBarry Smith    PetscMalloc6 - Allocates 6 chunks of  memory all aligned to PETSC_MEMALIGN
758d382aafbSBarry Smith 
759eca87e8dSBarry Smith    Synopsis:
760eca87e8dSBarry Smith    PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6)
761eca87e8dSBarry Smith 
762eca87e8dSBarry Smith    Not Collective
763eca87e8dSBarry Smith 
764d382aafbSBarry Smith    Input Parameter:
765d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
766d382aafbSBarry Smith .  t1 - type of first memory elements
767d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
768d382aafbSBarry Smith .  t2 - type of second memory elements
769d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
770d382aafbSBarry Smith .  t3 - type of third memory elements
771d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
772d382aafbSBarry Smith .  t4 - type of fourth memory elements
773d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
774d382aafbSBarry Smith .  t5 - type of fifth memory elements
775d382aafbSBarry Smith .  m6 - number of elements to allocate in 6th chunk  (may be zero)
776d382aafbSBarry Smith -  t6 - type of sixth memory elements
777d382aafbSBarry Smith 
778d382aafbSBarry Smith    Output Parameter:
779d382aafbSBarry Smith +  r1 - memory allocated in first chunk
780d382aafbSBarry Smith .  r2 - memory allocated in second chunk
781d382aafbSBarry Smith .  r3 - memory allocated in third chunk
782d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
783d382aafbSBarry Smith .  r5 - memory allocated in fifth chunk
784d382aafbSBarry Smith -  r6 - memory allocated in sixth chunk
785d382aafbSBarry Smith 
786d382aafbSBarry Smith    Level: developer
787d382aafbSBarry Smith 
788d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6()
789d382aafbSBarry Smith 
790d382aafbSBarry Smith   Concepts: memory allocation
791d382aafbSBarry Smith 
792d382aafbSBarry Smith M*/
793d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
794d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6))
795d382aafbSBarry Smith #else
796d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \
7973b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \
798d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0))
799d382aafbSBarry Smith #endif
800d382aafbSBarry Smith 
801d382aafbSBarry Smith /*MC
802503cfb0cSBarry Smith    PetscMalloc7 - Allocates 7 chunks of  memory all aligned to PETSC_MEMALIGN
803d382aafbSBarry Smith 
804eca87e8dSBarry Smith    Synopsis:
805eca87e8dSBarry Smith    PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7)
806eca87e8dSBarry Smith 
807eca87e8dSBarry Smith    Not Collective
808eca87e8dSBarry Smith 
809d382aafbSBarry Smith    Input Parameter:
810d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
811d382aafbSBarry Smith .  t1 - type of first memory elements
812d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
813d382aafbSBarry Smith .  t2 - type of second memory elements
814d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
815d382aafbSBarry Smith .  t3 - type of third memory elements
816d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
817d382aafbSBarry Smith .  t4 - type of fourth memory elements
818d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
819d382aafbSBarry Smith .  t5 - type of fifth memory elements
820d382aafbSBarry Smith .  m6 - number of elements to allocate in 6th chunk  (may be zero)
821d382aafbSBarry Smith .  t6 - type of sixth memory elements
822d382aafbSBarry Smith .  m7 - number of elements to allocate in 7th chunk  (may be zero)
823d382aafbSBarry Smith -  t7 - type of sixth memory elements
824d382aafbSBarry Smith 
825d382aafbSBarry Smith    Output Parameter:
826d382aafbSBarry Smith +  r1 - memory allocated in first chunk
827d382aafbSBarry Smith .  r2 - memory allocated in second chunk
828d382aafbSBarry Smith .  r3 - memory allocated in third chunk
829d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
830d382aafbSBarry Smith .  r5 - memory allocated in fifth chunk
831d382aafbSBarry Smith .  r6 - memory allocated in sixth chunk
832eca87e8dSBarry Smith -  r7 - memory allocated in seventh chunk
833d382aafbSBarry Smith 
834d382aafbSBarry Smith    Level: developer
835d382aafbSBarry Smith 
836d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7()
837d382aafbSBarry Smith 
838d382aafbSBarry Smith   Concepts: memory allocation
839d382aafbSBarry Smith 
840d382aafbSBarry Smith M*/
841d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
842d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7))
843d382aafbSBarry Smith #else
844d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \
8453b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \
846d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0))
847d382aafbSBarry Smith #endif
848d382aafbSBarry Smith 
849d382aafbSBarry Smith /*MC
850503cfb0cSBarry Smith    PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN
851d382aafbSBarry Smith 
852eca87e8dSBarry Smith    Synopsis:
853eca87e8dSBarry Smith    PetscErrorCode PetscNew(struct type,((type *))result)
854eca87e8dSBarry Smith 
855eca87e8dSBarry Smith    Not Collective
856eca87e8dSBarry Smith 
857d382aafbSBarry Smith    Input Parameter:
858d382aafbSBarry Smith .  type - structure name of space to be allocated. Memory of size sizeof(type) is allocated
859d382aafbSBarry Smith 
860d382aafbSBarry Smith    Output Parameter:
861d382aafbSBarry Smith .  result - memory allocated
862d382aafbSBarry Smith 
863d382aafbSBarry Smith    Level: beginner
864d382aafbSBarry Smith 
865ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog()
866d382aafbSBarry Smith 
867d382aafbSBarry Smith   Concepts: memory allocation
868d382aafbSBarry Smith 
869d382aafbSBarry Smith M*/
870d382aafbSBarry Smith #define PetscNew(A,b)      (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A)))
871ad0619ddSBarry Smith 
872ad0619ddSBarry Smith /*MC
873ad0619ddSBarry Smith    PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated
874ad0619ddSBarry Smith          with the given object using PetscLogObjectMemory().
875ad0619ddSBarry Smith 
876ad0619ddSBarry Smith    Synopsis:
877ad0619ddSBarry Smith    PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result)
878ad0619ddSBarry Smith 
879ad0619ddSBarry Smith    Not Collective
880ad0619ddSBarry Smith 
881ad0619ddSBarry Smith    Input Parameter:
882ad0619ddSBarry Smith +  obj - object memory is logged to
883ad0619ddSBarry Smith -  type - structure name of space to be allocated. Memory of size sizeof(type) is allocated
884ad0619ddSBarry Smith 
885ad0619ddSBarry Smith    Output Parameter:
886ad0619ddSBarry Smith .  result - memory allocated
887ad0619ddSBarry Smith 
888ad0619ddSBarry Smith    Level: developer
889ad0619ddSBarry Smith 
890ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory()
891ad0619ddSBarry Smith 
892ad0619ddSBarry Smith   Concepts: memory allocation
893ad0619ddSBarry Smith 
894ad0619ddSBarry Smith M*/
895d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0))
896d382aafbSBarry Smith 
897d382aafbSBarry Smith /*MC
898d382aafbSBarry Smith    PetscFree - Frees memory
899d382aafbSBarry Smith 
900eca87e8dSBarry Smith    Synopsis:
901eca87e8dSBarry Smith    PetscErrorCode PetscFree(void *memory)
902eca87e8dSBarry Smith 
903eca87e8dSBarry Smith    Not Collective
904eca87e8dSBarry Smith 
905d382aafbSBarry Smith    Input Parameter:
906d382aafbSBarry Smith .   memory - memory to free (the pointer is ALWAYS set to 0 upon sucess)
907d382aafbSBarry Smith 
908d382aafbSBarry Smith    Level: beginner
909d382aafbSBarry Smith 
910d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscNew() or PetscMalloc()
911d382aafbSBarry Smith 
912d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid()
913d382aafbSBarry Smith 
914d382aafbSBarry Smith   Concepts: memory allocation
915d382aafbSBarry Smith 
916d382aafbSBarry Smith M*/
91712537b14SJed Brown #define PetscFree(a)   ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0)))
918d382aafbSBarry Smith 
919d382aafbSBarry Smith /*MC
920d382aafbSBarry Smith    PetscFreeVoid - Frees memory
921d382aafbSBarry Smith 
922d382aafbSBarry Smith    Synopsis:
923d382aafbSBarry Smith    void PetscFreeVoid(void *memory)
924d382aafbSBarry Smith 
925eca87e8dSBarry Smith    Not Collective
926eca87e8dSBarry Smith 
927eca87e8dSBarry Smith    Input Parameter:
928eca87e8dSBarry Smith .   memory - memory to free
929eca87e8dSBarry Smith 
930d382aafbSBarry Smith    Level: beginner
931d382aafbSBarry Smith 
932d382aafbSBarry Smith    Notes: This is different from PetscFree() in that no error code is returned
933d382aafbSBarry Smith 
934d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc()
935d382aafbSBarry Smith 
936d382aafbSBarry Smith   Concepts: memory allocation
937d382aafbSBarry Smith 
938d382aafbSBarry Smith M*/
9392714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0)
940d382aafbSBarry Smith 
941d382aafbSBarry Smith 
942d382aafbSBarry Smith /*MC
943d382aafbSBarry Smith    PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2()
944d382aafbSBarry Smith 
945eca87e8dSBarry Smith    Synopsis:
946eca87e8dSBarry Smith    PetscErrorCode PetscFree2(void *memory1,void *memory2)
947eca87e8dSBarry Smith 
948eca87e8dSBarry Smith    Not Collective
949eca87e8dSBarry Smith 
950d382aafbSBarry Smith    Input Parameter:
951d382aafbSBarry Smith +   memory1 - memory to free
952d382aafbSBarry Smith -   memory2 - 2nd memory to free
953d382aafbSBarry Smith 
954d382aafbSBarry Smith    Level: developer
955d382aafbSBarry Smith 
956d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc2()
957d382aafbSBarry Smith 
958d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree()
959d382aafbSBarry Smith 
960d382aafbSBarry Smith   Concepts: memory allocation
961d382aafbSBarry Smith 
962d382aafbSBarry Smith M*/
963d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
964d382aafbSBarry Smith #define PetscFree2(m1,m2)   (PetscFree(m2) || PetscFree(m1))
965d382aafbSBarry Smith #else
96681dabb53SJed Brown #define PetscFree2(m1,m2)   ((m2)=0, PetscFree(m1))
967d382aafbSBarry Smith #endif
968d382aafbSBarry Smith 
969d382aafbSBarry Smith /*MC
970d382aafbSBarry Smith    PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3()
971d382aafbSBarry Smith 
972eca87e8dSBarry Smith    Synopsis:
973eca87e8dSBarry Smith    PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3)
974eca87e8dSBarry Smith 
975eca87e8dSBarry Smith    Not Collective
976eca87e8dSBarry Smith 
977d382aafbSBarry Smith    Input Parameter:
978d382aafbSBarry Smith +   memory1 - memory to free
979d382aafbSBarry Smith .   memory2 - 2nd memory to free
980d382aafbSBarry Smith -   memory3 - 3rd memory to free
981d382aafbSBarry Smith 
982d382aafbSBarry Smith    Level: developer
983d382aafbSBarry Smith 
984d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc3()
985d382aafbSBarry Smith 
986d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3()
987d382aafbSBarry Smith 
988d382aafbSBarry Smith   Concepts: memory allocation
989d382aafbSBarry Smith 
990d382aafbSBarry Smith M*/
991d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
992d382aafbSBarry Smith #define PetscFree3(m1,m2,m3)   (PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
993d382aafbSBarry Smith #else
99481dabb53SJed Brown #define PetscFree3(m1,m2,m3)   ((m3)=0,(m2)=0,PetscFree(m1))
995d382aafbSBarry Smith #endif
996d382aafbSBarry Smith 
997d382aafbSBarry Smith /*MC
998d382aafbSBarry Smith    PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4()
999d382aafbSBarry Smith 
1000eca87e8dSBarry Smith    Synopsis:
1001eca87e8dSBarry Smith    PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4)
1002eca87e8dSBarry Smith 
1003eca87e8dSBarry Smith    Not Collective
1004eca87e8dSBarry Smith 
1005d382aafbSBarry Smith    Input Parameter:
1006d382aafbSBarry Smith +   m1 - memory to free
1007d382aafbSBarry Smith .   m2 - 2nd memory to free
1008d382aafbSBarry Smith .   m3 - 3rd memory to free
1009d382aafbSBarry Smith -   m4 - 4th memory to free
1010d382aafbSBarry Smith 
1011d382aafbSBarry Smith    Level: developer
1012d382aafbSBarry Smith 
1013d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc4()
1014d382aafbSBarry Smith 
1015d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4()
1016d382aafbSBarry Smith 
1017d382aafbSBarry Smith   Concepts: memory allocation
1018d382aafbSBarry Smith 
1019d382aafbSBarry Smith M*/
1020d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1021d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4)   (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1022d382aafbSBarry Smith #else
102381dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4)   ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1024d382aafbSBarry Smith #endif
1025d382aafbSBarry Smith 
1026d382aafbSBarry Smith /*MC
1027d382aafbSBarry Smith    PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5()
1028d382aafbSBarry Smith 
1029eca87e8dSBarry Smith    Synopsis:
1030eca87e8dSBarry Smith    PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5)
1031eca87e8dSBarry Smith 
1032eca87e8dSBarry Smith    Not Collective
1033eca87e8dSBarry Smith 
1034d382aafbSBarry Smith    Input Parameter:
1035d382aafbSBarry Smith +   m1 - memory to free
1036d382aafbSBarry Smith .   m2 - 2nd memory to free
1037d382aafbSBarry Smith .   m3 - 3rd memory to free
1038d382aafbSBarry Smith .   m4 - 4th memory to free
1039d382aafbSBarry Smith -   m5 - 5th memory to free
1040d382aafbSBarry Smith 
1041d382aafbSBarry Smith    Level: developer
1042d382aafbSBarry Smith 
1043d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc5()
1044d382aafbSBarry Smith 
1045d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5()
1046d382aafbSBarry Smith 
1047d382aafbSBarry Smith   Concepts: memory allocation
1048d382aafbSBarry Smith 
1049d382aafbSBarry Smith M*/
1050d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1051d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5)   (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1052d382aafbSBarry Smith #else
105381dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5)   ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1054d382aafbSBarry Smith #endif
1055d382aafbSBarry Smith 
1056d382aafbSBarry Smith 
1057d382aafbSBarry Smith /*MC
1058d382aafbSBarry Smith    PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6()
1059d382aafbSBarry Smith 
1060eca87e8dSBarry Smith    Synopsis:
1061eca87e8dSBarry Smith    PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6)
1062eca87e8dSBarry Smith 
1063eca87e8dSBarry Smith    Not Collective
1064eca87e8dSBarry Smith 
1065d382aafbSBarry Smith    Input Parameter:
1066d382aafbSBarry Smith +   m1 - memory to free
1067d382aafbSBarry Smith .   m2 - 2nd memory to free
1068d382aafbSBarry Smith .   m3 - 3rd memory to free
1069d382aafbSBarry Smith .   m4 - 4th memory to free
1070d382aafbSBarry Smith .   m5 - 5th memory to free
1071d382aafbSBarry Smith -   m6 - 6th memory to free
1072d382aafbSBarry Smith 
1073d382aafbSBarry Smith 
1074d382aafbSBarry Smith    Level: developer
1075d382aafbSBarry Smith 
1076d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc6()
1077d382aafbSBarry Smith 
1078d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6()
1079d382aafbSBarry Smith 
1080d382aafbSBarry Smith   Concepts: memory allocation
1081d382aafbSBarry Smith 
1082d382aafbSBarry Smith M*/
1083d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1084d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6)   (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1085d382aafbSBarry Smith #else
108681dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6)   ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1087d382aafbSBarry Smith #endif
1088d382aafbSBarry Smith 
1089d382aafbSBarry Smith /*MC
1090d382aafbSBarry Smith    PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7()
1091d382aafbSBarry Smith 
1092eca87e8dSBarry Smith    Synopsis:
1093eca87e8dSBarry Smith    PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7)
1094eca87e8dSBarry Smith 
1095eca87e8dSBarry Smith    Not Collective
1096eca87e8dSBarry Smith 
1097d382aafbSBarry Smith    Input Parameter:
1098d382aafbSBarry Smith +   m1 - memory to free
1099d382aafbSBarry Smith .   m2 - 2nd memory to free
1100d382aafbSBarry Smith .   m3 - 3rd memory to free
1101d382aafbSBarry Smith .   m4 - 4th memory to free
1102d382aafbSBarry Smith .   m5 - 5th memory to free
1103d382aafbSBarry Smith .   m6 - 6th memory to free
1104d382aafbSBarry Smith -   m7 - 7th memory to free
1105d382aafbSBarry Smith 
1106d382aafbSBarry Smith 
1107d382aafbSBarry Smith    Level: developer
1108d382aafbSBarry Smith 
1109d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc7()
1110d382aafbSBarry Smith 
1111d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(),
1112d382aafbSBarry Smith           PetscMalloc7()
1113d382aafbSBarry Smith 
1114d382aafbSBarry Smith   Concepts: memory allocation
1115d382aafbSBarry Smith 
1116d382aafbSBarry Smith M*/
1117d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1118d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7)   (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1119d382aafbSBarry Smith #else
112081dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7)   ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1121d382aafbSBarry Smith #endif
1122d382aafbSBarry Smith 
11237087cfbeSBarry Smith extern  PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**);
11247087cfbeSBarry Smith extern  PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]);
11257087cfbeSBarry Smith extern PetscErrorCode   PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[]));
11267087cfbeSBarry Smith extern PetscErrorCode   PetscMallocClear(void);
1127d382aafbSBarry Smith 
1128d382aafbSBarry Smith /*
112966d669d6SBarry Smith    Routines for tracing memory corruption/bleeding with default PETSc  memory allocation
1130d382aafbSBarry Smith */
11317087cfbeSBarry Smith extern PetscErrorCode    PetscMallocDump(FILE *);
11327087cfbeSBarry Smith extern PetscErrorCode    PetscMallocDumpLog(FILE *);
11337087cfbeSBarry Smith extern PetscErrorCode    PetscMallocGetCurrentUsage(PetscLogDouble *);
11347087cfbeSBarry Smith extern PetscErrorCode    PetscMallocGetMaximumUsage(PetscLogDouble *);
11357087cfbeSBarry Smith extern PetscErrorCode    PetscMallocDebug(PetscBool);
11367087cfbeSBarry Smith extern PetscErrorCode    PetscMallocValidate(int,const char[],const char[],const char[]);
11377087cfbeSBarry Smith extern PetscErrorCode    PetscMallocSetDumpLog(void);
113818a2528dSJed Brown extern PetscErrorCode PetscMallocGetDumpLog(PetscBool*);
1139d382aafbSBarry Smith 
1140d382aafbSBarry Smith 
1141d382aafbSBarry Smith /*E
1142d382aafbSBarry Smith     PetscDataType - Used for handling different basic data types.
1143d382aafbSBarry Smith 
1144d382aafbSBarry Smith    Level: beginner
1145d382aafbSBarry Smith 
1146d382aafbSBarry Smith    Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not?
1147d382aafbSBarry Smith 
1148d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(),
1149d382aafbSBarry Smith           PetscDataTypeGetSize()
1150d382aafbSBarry Smith 
1151d382aafbSBarry Smith E*/
1152d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5,
115359a34000SBarry Smith               PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType;
1154d382aafbSBarry Smith extern const char *PetscDataTypes[];
1155d382aafbSBarry Smith 
1156d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX)
1157d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_COMPLEX
1158d382aafbSBarry Smith #else
1159ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE)
1160d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_FLOAT
116159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128)
116259a34000SBarry Smith #define  PETSC_SCALAR  PETSC___FLOAT128
1163d382aafbSBarry Smith #else
1164d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_DOUBLE
1165d382aafbSBarry Smith #endif
1166d382aafbSBarry Smith #endif
1167ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE)
1168d382aafbSBarry Smith #define  PETSC_REAL  PETSC_FLOAT
116959a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128)
117059a34000SBarry Smith #define  PETSC_REAL  PETSC___FLOAT128
1171d382aafbSBarry Smith #else
1172d382aafbSBarry Smith #define  PETSC_REAL  PETSC_DOUBLE
1173d382aafbSBarry Smith #endif
1174d382aafbSBarry Smith #define  PETSC_FORTRANADDR  PETSC_LONG
1175d382aafbSBarry Smith 
11767087cfbeSBarry Smith extern PetscErrorCode  PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*);
11777087cfbeSBarry Smith extern PetscErrorCode  PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*);
11787087cfbeSBarry Smith extern PetscErrorCode  PetscDataTypeGetSize(PetscDataType,size_t*);
1179d382aafbSBarry Smith 
1180d382aafbSBarry Smith /*
1181d382aafbSBarry Smith     Basic memory and string operations. These are usually simple wrappers
1182d382aafbSBarry Smith    around the basic Unix system calls, but a few of them have additional
1183d382aafbSBarry Smith    functionality and/or error checking.
1184d382aafbSBarry Smith */
11857087cfbeSBarry Smith extern PetscErrorCode    PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType);
11867087cfbeSBarry Smith extern PetscErrorCode    PetscMemmove(void*,void *,size_t);
11877087cfbeSBarry Smith extern PetscErrorCode    PetscMemcmp(const void*,const void*,size_t,PetscBool  *);
11887087cfbeSBarry Smith extern PetscErrorCode    PetscStrlen(const char[],size_t*);
11897087cfbeSBarry Smith extern PetscErrorCode    PetscStrToArray(const char[],int*,char ***);
11907087cfbeSBarry Smith extern PetscErrorCode    PetscStrToArrayDestroy(int,char **);
11917087cfbeSBarry Smith extern PetscErrorCode    PetscStrcmp(const char[],const char[],PetscBool  *);
11927087cfbeSBarry Smith extern PetscErrorCode    PetscStrgrt(const char[],const char[],PetscBool  *);
11937087cfbeSBarry Smith extern PetscErrorCode    PetscStrcasecmp(const char[],const char[],PetscBool *);
11947087cfbeSBarry Smith extern PetscErrorCode    PetscStrncmp(const char[],const char[],size_t,PetscBool *);
11957087cfbeSBarry Smith extern PetscErrorCode    PetscStrcpy(char[],const char[]);
11967087cfbeSBarry Smith extern PetscErrorCode    PetscStrcat(char[],const char[]);
11977087cfbeSBarry Smith extern PetscErrorCode    PetscStrncat(char[],const char[],size_t);
11987087cfbeSBarry Smith extern PetscErrorCode    PetscStrncpy(char[],const char[],size_t);
11997087cfbeSBarry Smith extern PetscErrorCode    PetscStrchr(const char[],char,char *[]);
12007087cfbeSBarry Smith extern PetscErrorCode    PetscStrtolower(char[]);
12017087cfbeSBarry Smith extern PetscErrorCode    PetscStrrchr(const char[],char,char *[]);
12027087cfbeSBarry Smith extern PetscErrorCode    PetscStrstr(const char[],const char[],char *[]);
12037087cfbeSBarry Smith extern PetscErrorCode    PetscStrrstr(const char[],const char[],char *[]);
120474722a09SBarry Smith extern PetscErrorCode    PetscStrendswith(const char[],const char[],PetscBool*);
12057ba3a57cSBarry Smith extern PetscErrorCode    PetscStrendswithwhich(const char[],const char *const*,PetscInt*);
12067087cfbeSBarry Smith extern PetscErrorCode    PetscStrallocpy(const char[],char *[]);
12077087cfbeSBarry Smith extern PetscErrorCode    PetscStrreplace(MPI_Comm,const char[],char[],size_t);
1208d382aafbSBarry Smith 
1209d382aafbSBarry Smith /*S
1210d382aafbSBarry Smith     PetscToken - 'Token' used for managing tokenizing strings
1211d382aafbSBarry Smith 
1212d382aafbSBarry Smith   Level: intermediate
1213d382aafbSBarry Smith 
1214d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy()
1215d382aafbSBarry Smith S*/
1216d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken;
1217d382aafbSBarry Smith 
12187087cfbeSBarry Smith extern PetscErrorCode    PetscTokenCreate(const char[],const char,PetscToken*);
12197087cfbeSBarry Smith extern PetscErrorCode    PetscTokenFind(PetscToken,char *[]);
12208c74ee41SBarry Smith extern PetscErrorCode    PetscTokenDestroy(PetscToken*);
1221d382aafbSBarry Smith 
1222d382aafbSBarry Smith /*
1223d382aafbSBarry Smith    These are  MPI operations for MPI_Allreduce() etc
1224d382aafbSBarry Smith */
12257087cfbeSBarry Smith extern  MPI_Op PetscMaxSum_Op;
1226ce63c4c1SBarry Smith #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128)
12277087cfbeSBarry Smith extern  MPI_Op MPIU_SUM;
1228d382aafbSBarry Smith #else
1229d382aafbSBarry Smith #define MPIU_SUM MPI_SUM
1230d382aafbSBarry Smith #endif
1231ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128)
1232d9822059SBarry Smith extern  MPI_Op MPIU_MAX;
1233d9822059SBarry Smith extern  MPI_Op MPIU_MIN;
1234d9822059SBarry Smith #else
1235d9822059SBarry Smith #define MPIU_MAX MPI_MAX
1236d9822059SBarry Smith #define MPIU_MIN MPI_MIN
1237d9822059SBarry Smith #endif
12387087cfbeSBarry Smith extern PetscErrorCode  PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*);
1239d382aafbSBarry Smith 
1240eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm);
1241eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm);
1242eb3f98d2SBarry Smith 
1243d382aafbSBarry Smith /*S
1244d382aafbSBarry Smith      PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc
1245d382aafbSBarry Smith 
1246d382aafbSBarry Smith    Level: beginner
1247d382aafbSBarry Smith 
1248d382aafbSBarry Smith    Note: This is the base class from which all objects appear.
1249d382aafbSBarry Smith 
12501890ba74SBarry Smith .seealso:  PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc()
1251d382aafbSBarry Smith S*/
1252d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject;
1253d382aafbSBarry Smith 
1254d382aafbSBarry Smith /*S
1255d382aafbSBarry Smith      PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed
1256d382aafbSBarry Smith       by string name
1257d382aafbSBarry Smith 
1258d382aafbSBarry Smith    Level: advanced
1259d382aafbSBarry Smith 
1260d382aafbSBarry Smith .seealso:  PetscFListAdd(), PetscFListDestroy()
1261d382aafbSBarry Smith S*/
1262d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList;
1263d382aafbSBarry Smith 
1264e4d1774bSDmitry Karpeev /*S
1265e4d1774bSDmitry Karpeev      PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries,
1266e4d1774bSDmitry Karpeev                     accessed by string op name together with string argument types.
1267e4d1774bSDmitry Karpeev 
1268e4d1774bSDmitry Karpeev    Level: advanced
1269e4d1774bSDmitry Karpeev 
1270e4d1774bSDmitry Karpeev .seealso:  PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy()
1271e4d1774bSDmitry Karpeev S*/
1272e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList;
1273e4d1774bSDmitry Karpeev 
1274d382aafbSBarry Smith /*E
1275d382aafbSBarry Smith   PetscFileMode - Access mode for a file.
1276d382aafbSBarry Smith 
1277d382aafbSBarry Smith   Level: beginner
1278d382aafbSBarry Smith 
1279d382aafbSBarry Smith   FILE_MODE_READ - open a file at its beginning for reading
1280d382aafbSBarry Smith 
1281d382aafbSBarry Smith   FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist)
1282d382aafbSBarry Smith 
1283d382aafbSBarry Smith   FILE_MODE_APPEND - open a file at end for writing
1284d382aafbSBarry Smith 
1285d382aafbSBarry Smith   FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing
1286d382aafbSBarry Smith 
1287d382aafbSBarry Smith   FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end
1288d382aafbSBarry Smith 
1289d382aafbSBarry Smith .seealso: PetscViewerFileSetMode()
1290d382aafbSBarry Smith E*/
1291d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode;
1292d382aafbSBarry Smith 
1293d382aafbSBarry Smith #include "petscviewer.h"
1294d382aafbSBarry Smith #include "petscoptions.h"
1295d382aafbSBarry Smith 
12960700a824SBarry Smith #define PETSC_SMALLEST_CLASSID  1211211
12977087cfbeSBarry Smith extern PetscClassId   PETSC_LARGEST_CLASSID;
12987087cfbeSBarry Smith extern PetscClassId   PETSC_OBJECT_CLASSID;
12997087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *);
1300d382aafbSBarry Smith 
1301d382aafbSBarry Smith /*
1302d382aafbSBarry Smith    Routines that get memory usage information from the OS
1303d382aafbSBarry Smith */
13047087cfbeSBarry Smith extern PetscErrorCode  PetscMemoryGetCurrentUsage(PetscLogDouble *);
13057087cfbeSBarry Smith extern PetscErrorCode  PetscMemoryGetMaximumUsage(PetscLogDouble *);
13067087cfbeSBarry Smith extern PetscErrorCode  PetscMemorySetGetMaximumUsage(void);
13077087cfbeSBarry Smith extern PetscErrorCode  PetscMemoryShowUsage(PetscViewer,const char[]);
1308d382aafbSBarry Smith 
13097087cfbeSBarry Smith extern PetscErrorCode  PetscInfoAllow(PetscBool ,const char []);
13107087cfbeSBarry Smith extern PetscErrorCode  PetscGetTime(PetscLogDouble*);
13117087cfbeSBarry Smith extern PetscErrorCode  PetscGetCPUTime(PetscLogDouble*);
13127087cfbeSBarry Smith extern PetscErrorCode  PetscSleep(PetscReal);
1313d382aafbSBarry Smith 
1314d382aafbSBarry Smith /*
1315d382aafbSBarry Smith    Initialization of PETSc
1316d382aafbSBarry Smith */
13177087cfbeSBarry Smith extern PetscErrorCode  PetscInitialize(int*,char***,const char[],const char[]);
1318d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL))
13197087cfbeSBarry Smith extern PetscErrorCode  PetscInitializeNoArguments(void);
13207087cfbeSBarry Smith extern PetscErrorCode  PetscInitialized(PetscBool  *);
13217087cfbeSBarry Smith extern PetscErrorCode  PetscFinalized(PetscBool  *);
13227087cfbeSBarry Smith extern PetscErrorCode  PetscFinalize(void);
132309573ac7SBarry Smith extern PetscErrorCode  PetscInitializeFortran(void);
13247087cfbeSBarry Smith extern PetscErrorCode  PetscGetArgs(int*,char ***);
13257087cfbeSBarry Smith extern PetscErrorCode  PetscGetArguments(char ***);
13267087cfbeSBarry Smith extern PetscErrorCode  PetscFreeArguments(char **);
1327d382aafbSBarry Smith 
13287087cfbeSBarry Smith extern PetscErrorCode  PetscEnd(void);
13297087cfbeSBarry Smith extern PetscErrorCode  PetscSysInitializePackage(const char[]);
1330d382aafbSBarry Smith 
1331d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD;
133285afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*);
133385afcc9aSBarry Smith extern PetscErrorCode  PetscHMPISpawn(PetscMPIInt);
133485afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIFinalize(void);
133585afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*);
133685afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*);
133785afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIFree(MPI_Comm,void*);
133885afcc9aSBarry Smith extern PetscErrorCode  PetscHMPIMalloc(MPI_Comm,size_t,void**);
1339d382aafbSBarry Smith 
13407087cfbeSBarry Smith extern PetscErrorCode  PetscPythonInitialize(const char[],const char[]);
13417087cfbeSBarry Smith extern PetscErrorCode  PetscPythonFinalize(void);
13427087cfbeSBarry Smith extern PetscErrorCode  PetscPythonPrintError(void);
13435180491cSLisandro Dalcin extern PetscErrorCode  PetscPythonMonitorSet(PetscObject,const char[]);
1344d382aafbSBarry Smith 
1345d382aafbSBarry Smith /*
1346d382aafbSBarry Smith      These are so that in extern C code we can caste function pointers to non-extern C
1347d382aafbSBarry Smith    function pointers. Since the regular C++ code expects its function pointers to be
1348d382aafbSBarry Smith    C++.
1349d382aafbSBarry Smith */
1350d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void);
1351d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void);
1352d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void);
1353d382aafbSBarry Smith 
1354d382aafbSBarry Smith /*
1355d382aafbSBarry Smith    PetscTryMethod - Queries an object for a method, if it exists then calls it.
1356d382aafbSBarry Smith               These are intended to be used only inside PETSc functions.
1357503cfb0cSBarry Smith 
1358503cfb0cSBarry Smith    Level: developer
1359503cfb0cSBarry Smith 
1360503cfb0cSBarry Smith .seealso: PetscUseMethod()
1361d382aafbSBarry Smith */
1362d382aafbSBarry Smith #define  PetscTryMethod(obj,A,B,C) \
1363d382aafbSBarry Smith   0;{ PetscErrorCode (*f)B, __ierr; \
1364d382aafbSBarry Smith     __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \
1365d382aafbSBarry Smith     if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\
1366d382aafbSBarry Smith   }
1367503cfb0cSBarry Smith 
1368503cfb0cSBarry Smith /*
1369503cfb0cSBarry Smith    PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error.
1370503cfb0cSBarry Smith               These are intended to be used only inside PETSc functions.
1371503cfb0cSBarry Smith 
1372503cfb0cSBarry Smith    Level: developer
1373503cfb0cSBarry Smith 
1374503cfb0cSBarry Smith .seealso: PetscTryMethod()
1375503cfb0cSBarry Smith */
1376d382aafbSBarry Smith #define  PetscUseMethod(obj,A,B,C) \
1377d382aafbSBarry Smith   0;{ PetscErrorCode (*f)B, __ierr; \
1378d382aafbSBarry Smith     __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \
1379d382aafbSBarry Smith     if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\
1380703c66c1SJed Brown     else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \
1381d382aafbSBarry Smith   }
1382503cfb0cSBarry Smith 
1383d382aafbSBarry Smith /*
1384d382aafbSBarry Smith     Functions that can act on any PETSc object.
1385d382aafbSBarry Smith */
1386fcfd50ebSBarry Smith extern PetscErrorCode  PetscObjectDestroy(PetscObject*);
13877087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetComm(PetscObject,MPI_Comm *);
13887087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetClassId(PetscObject,PetscClassId *);
1389609db0e0SLisandro Dalcin extern PetscErrorCode  PetscObjectGetClassName(PetscObject,const char *[]);
13907087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetType(PetscObject,const char []);
13917087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetPrecision(PetscObject,PetscPrecision);
13927087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetType(PetscObject,const char *[]);
13937087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetName(PetscObject,const char[]);
13947087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetName(PetscObject,const char*[]);
13957087cfbeSBarry Smith extern PetscErrorCode  PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]);
13967087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetTabLevel(PetscObject,PetscInt);
13977087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetTabLevel(PetscObject,PetscInt*);
13987087cfbeSBarry Smith extern PetscErrorCode  PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt);
13997087cfbeSBarry Smith extern PetscErrorCode  PetscObjectReference(PetscObject);
14007087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetReference(PetscObject,PetscInt*);
14017087cfbeSBarry Smith extern PetscErrorCode  PetscObjectDereference(PetscObject);
14027087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetNewTag(PetscObject,PetscMPIInt *);
14037087cfbeSBarry Smith extern PetscErrorCode  PetscObjectView(PetscObject,PetscViewer);
14047087cfbeSBarry Smith extern PetscErrorCode  PetscObjectCompose(PetscObject,const char[],PetscObject);
14056ba4bc90SBarry Smith extern PetscErrorCode  PetscObjectRemoveReference(PetscObject,const char[]);
14067087cfbeSBarry Smith extern PetscErrorCode  PetscObjectQuery(PetscObject,const char[],PetscObject *);
14077087cfbeSBarry Smith extern PetscErrorCode  PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void));
14087087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetFromOptions(PetscObject);
14097087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetUp(PetscObject);
14107087cfbeSBarry Smith extern PetscErrorCode  PetscCommGetNewTag(MPI_Comm,PetscMPIInt *);
14117087cfbeSBarry Smith extern PetscErrorCode  PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*);
14127087cfbeSBarry Smith extern PetscErrorCode  PetscObjectProcessOptionsHandlers(PetscObject);
14137087cfbeSBarry Smith extern PetscErrorCode  PetscObjectDestroyOptionsHandlers(PetscObject);
1414d382aafbSBarry Smith 
1415d382aafbSBarry Smith /*MC
1416d382aafbSBarry Smith    PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object.
1417d382aafbSBarry Smith 
1418eca87e8dSBarry Smith     Synopsis:
1419eca87e8dSBarry Smith     PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr)
1420eca87e8dSBarry Smith 
1421ad4df100SBarry Smith    Logically Collective on PetscObject
1422d382aafbSBarry Smith 
1423d382aafbSBarry Smith    Input Parameters:
1424d382aafbSBarry Smith +  obj - the PETSc object; this must be cast with a (PetscObject), for example,
1425d382aafbSBarry Smith          PetscObjectCompose((PetscObject)mat,...);
1426d382aafbSBarry Smith .  name - name associated with the child function
1427d382aafbSBarry Smith .  fname - name of the function
1428d382aafbSBarry Smith -  ptr - function pointer (or PETSC_NULL if using dynamic libraries)
1429d382aafbSBarry Smith 
1430d382aafbSBarry Smith    Level: advanced
1431d382aafbSBarry Smith 
1432d382aafbSBarry Smith 
1433d382aafbSBarry Smith    Notes:
1434d382aafbSBarry Smith    To remove a registered routine, pass in a PETSC_NULL rname and fnc().
1435d382aafbSBarry Smith 
1436d382aafbSBarry Smith    PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as
1437d382aafbSBarry Smith    Mat, Vec, KSP, SNES, etc.) or any user-provided object.
1438d382aafbSBarry Smith 
1439d382aafbSBarry Smith    The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to
144020de1f94SBarry Smith    work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading)
1441d382aafbSBarry Smith    enabled.
1442d382aafbSBarry Smith 
1443d382aafbSBarry Smith    Concepts: objects^composing functions
1444d382aafbSBarry Smith    Concepts: composing functions
1445d382aafbSBarry Smith    Concepts: functions^querying
1446d382aafbSBarry Smith    Concepts: objects^querying
1447d382aafbSBarry Smith    Concepts: querying objects
1448d382aafbSBarry Smith 
1449d382aafbSBarry Smith .seealso: PetscObjectQueryFunction()
1450d382aafbSBarry Smith M*/
1451d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
1452d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0)
1453d382aafbSBarry Smith #else
1454d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d))
1455d382aafbSBarry Smith #endif
1456d382aafbSBarry Smith 
14577087cfbeSBarry Smith extern PetscErrorCode  PetscObjectQueryFunction(PetscObject,const char[],void (**)(void));
14587087cfbeSBarry Smith extern PetscErrorCode  PetscObjectSetOptionsPrefix(PetscObject,const char[]);
14597087cfbeSBarry Smith extern PetscErrorCode  PetscObjectAppendOptionsPrefix(PetscObject,const char[]);
14607087cfbeSBarry Smith extern PetscErrorCode  PetscObjectPrependOptionsPrefix(PetscObject,const char[]);
14617087cfbeSBarry Smith extern PetscErrorCode  PetscObjectGetOptionsPrefix(PetscObject,const char*[]);
14627087cfbeSBarry Smith extern PetscErrorCode  PetscObjectAMSPublish(PetscObject);
14637087cfbeSBarry Smith extern PetscErrorCode  PetscObjectUnPublish(PetscObject);
14647087cfbeSBarry Smith extern PetscErrorCode  PetscObjectChangeTypeName(PetscObject,const char[]);
14657087cfbeSBarry Smith extern PetscErrorCode  PetscObjectRegisterDestroy(PetscObject);
14667087cfbeSBarry Smith extern PetscErrorCode  PetscObjectRegisterDestroyAll(void);
14677087cfbeSBarry Smith extern PetscErrorCode  PetscObjectName(PetscObject);
14687087cfbeSBarry Smith extern PetscErrorCode  PetscTypeCompare(PetscObject,const char[],PetscBool *);
14692b12f010SJed Brown extern PetscErrorCode  PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...);
14707087cfbeSBarry Smith extern PetscErrorCode  PetscRegisterFinalize(PetscErrorCode (*)(void));
14717087cfbeSBarry Smith extern PetscErrorCode  PetscRegisterFinalizeAll(void);
1472d382aafbSBarry Smith 
1473d382aafbSBarry Smith /*
1474d382aafbSBarry Smith     Defines PETSc error handling.
1475d382aafbSBarry Smith */
1476d382aafbSBarry Smith #include "petscerror.h"
1477d382aafbSBarry Smith 
1478d382aafbSBarry Smith /*S
1479503cfb0cSBarry Smith      PetscOList - Linked list of PETSc objects, each accessable by string name
1480d382aafbSBarry Smith 
14811d0fab5eSBarry Smith    Level: developer
1482d382aafbSBarry Smith 
14831d0fab5eSBarry Smith    Notes: Used by PetscObjectCompose() and PetscObjectQuery()
14841d0fab5eSBarry Smith 
14851d0fab5eSBarry Smith .seealso:  PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery()
1486d382aafbSBarry Smith S*/
1487d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList;
1488d382aafbSBarry Smith 
1489fcfd50ebSBarry Smith extern PetscErrorCode  PetscOListDestroy(PetscOList*);
14907087cfbeSBarry Smith extern PetscErrorCode  PetscOListFind(PetscOList,const char[],PetscObject*);
1491bfec8eecSBarry Smith extern PetscErrorCode  PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*);
14927087cfbeSBarry Smith extern PetscErrorCode  PetscOListAdd(PetscOList *,const char[],PetscObject);
14936ba4bc90SBarry Smith extern PetscErrorCode  PetscOListRemoveReference(PetscOList *,const char[]);
14947087cfbeSBarry Smith extern PetscErrorCode  PetscOListDuplicate(PetscOList,PetscOList *);
1495d382aafbSBarry Smith 
1496d382aafbSBarry Smith /*
1497503cfb0cSBarry Smith     Dynamic library lists. Lists of names of routines in objects or in dynamic
1498d382aafbSBarry Smith   link libraries that will be loaded as needed.
1499d382aafbSBarry Smith */
15007087cfbeSBarry Smith extern PetscErrorCode  PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void));
15017087cfbeSBarry Smith extern PetscErrorCode  PetscFListDestroy(PetscFList*);
15024b91b6eaSBarry Smith extern PetscErrorCode  PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void));
15037087cfbeSBarry Smith extern PetscErrorCode  PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]);
1504d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
1505d382aafbSBarry Smith #define    PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0)
1506d382aafbSBarry Smith #else
1507d382aafbSBarry Smith #define    PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c)
1508d382aafbSBarry Smith #endif
15097087cfbeSBarry Smith extern PetscErrorCode  PetscFListDuplicate(PetscFList,PetscFList *);
15107087cfbeSBarry Smith extern PetscErrorCode  PetscFListView(PetscFList,PetscViewer);
15117087cfbeSBarry Smith extern PetscErrorCode  PetscFListConcat(const char [],const char [],char []);
15127087cfbeSBarry Smith extern PetscErrorCode  PetscFListGet(PetscFList,char ***,int*);
1513d382aafbSBarry Smith 
151448703020SDmitry Karpeev /*
151548703020SDmitry Karpeev     Multiple dispatch operation function lists. Lists of names of routines with corresponding
151648703020SDmitry Karpeev     argument type names with function pointers or in dynamic link libraries that will be loaded
151748703020SDmitry Karpeev     as needed.  Search on the op name and argument type names.
151848703020SDmitry Karpeev */
1519*2356f84bSDmitry Karpeev extern PetscErrorCode  PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]);
152048703020SDmitry Karpeev extern PetscErrorCode  PetscOpFListDestroy(PetscOpFList*);
1521*2356f84bSDmitry Karpeev extern PetscErrorCode  PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]);
152248703020SDmitry Karpeev extern PetscErrorCode  PetscOpFListView(PetscOpFList,PetscViewer);
1523d382aafbSBarry Smith /*S
1524d382aafbSBarry Smith      PetscDLLibrary - Linked list of dynamics libraries to search for functions
1525d382aafbSBarry Smith 
1526d382aafbSBarry Smith    Level: advanced
1527d382aafbSBarry Smith 
152820de1f94SBarry Smith    --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries
1529d382aafbSBarry Smith 
1530d382aafbSBarry Smith .seealso:  PetscDLLibraryOpen()
1531d382aafbSBarry Smith S*/
1532d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary;
15337087cfbeSBarry Smith extern  PetscDLLibrary DLLibrariesLoaded;
15347087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]);
15357087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]);
15367087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **);
15377087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryPrintPath(PetscDLLibrary);
15387087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool  *);
15397087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *);
15407087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryClose(PetscDLLibrary);
15417087cfbeSBarry Smith extern PetscErrorCode  PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]);
1542d382aafbSBarry Smith 
1543d382aafbSBarry Smith /*
1544a5a3d712SDmitry Karpeev   PetscShell support.  Needs to be better documented.
154505846914SDmitry Karpeev   Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc.
154605846914SDmitry Karpeev */
1547a5a3d712SDmitry Karpeev #include "petscshell.h"
154805846914SDmitry Karpeev 
154905846914SDmitry Karpeev /*
1550d382aafbSBarry Smith      Useful utility routines
1551d382aafbSBarry Smith */
15527087cfbeSBarry Smith extern PetscErrorCode  PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*);
15537087cfbeSBarry Smith extern PetscErrorCode  PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*);
15547087cfbeSBarry Smith extern PetscErrorCode  PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt);
1555d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1))
1556d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1))
15577087cfbeSBarry Smith extern PetscErrorCode  PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt);
1558d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1))
1559d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1))
15607087cfbeSBarry Smith extern PetscErrorCode  PetscBarrier(PetscObject);
15617087cfbeSBarry Smith extern PetscErrorCode  PetscMPIDump(FILE*);
1562d382aafbSBarry Smith 
1563503cfb0cSBarry Smith /*
1564ace3abfcSBarry Smith     PetscNot - negates a logical type value and returns result as a PetscBool
1565503cfb0cSBarry Smith 
1566503cfb0cSBarry Smith     Notes: This is useful in cases like
1567503cfb0cSBarry Smith $     int        *a;
1568ace3abfcSBarry Smith $     PetscBool  flag = PetscNot(a)
1569ace3abfcSBarry Smith      where !a does not return a PetscBool  because we cannot provide a cast from int to PetscBool  in C.
1570503cfb0cSBarry Smith */
1571d382aafbSBarry Smith  #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE)
1572503cfb0cSBarry Smith 
1573d382aafbSBarry Smith /*
1574d382aafbSBarry Smith     Defines basic graphics available from PETSc.
1575d382aafbSBarry Smith */
1576d382aafbSBarry Smith #include "petscdraw.h"
1577d382aafbSBarry Smith 
1578d382aafbSBarry Smith /*
1579d382aafbSBarry Smith     Defines the base data structures for all PETSc objects
1580d382aafbSBarry Smith */
1581d382aafbSBarry Smith #include "private/petscimpl.h"
1582503cfb0cSBarry Smith 
1583238ccf28SShri Abhyankar 
1584d382aafbSBarry Smith /*MC
1585d382aafbSBarry Smith     PetscErrorPrintf - Prints error messages.
1586d382aafbSBarry Smith 
1587d382aafbSBarry Smith    Synopsis:
1588d382aafbSBarry Smith      PetscErrorCode (*PetscErrorPrintf)(const char format[],...);
1589d382aafbSBarry Smith 
1590eca87e8dSBarry Smith     Not Collective
1591eca87e8dSBarry Smith 
1592d382aafbSBarry Smith     Input Parameters:
1593d382aafbSBarry Smith .   format - the usual printf() format string
1594d382aafbSBarry Smith 
1595d382aafbSBarry Smith    Options Database Keys:
1596d382aafbSBarry Smith +    -error_output_stdout - cause error messages to be printed to stdout instead of the
1597d382aafbSBarry Smith          (default) stderr
1598d382aafbSBarry Smith -    -error_output_none to turn off all printing of error messages (does not change the way the
1599d382aafbSBarry Smith           error is handled.)
1600d382aafbSBarry Smith 
1601d382aafbSBarry Smith    Notes: Use
1602d382aafbSBarry Smith $     PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the
1603d382aafbSBarry Smith $                        error is handled.) and
1604d382aafbSBarry Smith $     PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on
1605c9a19010SBarry Smith $        of you can use your own function
1606d382aafbSBarry Smith 
1607d382aafbSBarry Smith           Use
1608d382aafbSBarry Smith      PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file.
1609d382aafbSBarry Smith      PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file.
1610d382aafbSBarry Smith 
1611d382aafbSBarry Smith           Use
1612d382aafbSBarry Smith       PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print
1613d382aafbSBarry Smith 
1614d382aafbSBarry Smith    Level: developer
1615d382aafbSBarry Smith 
1616d382aafbSBarry Smith     Fortran Note:
1617d382aafbSBarry Smith     This routine is not supported in Fortran.
1618d382aafbSBarry Smith 
1619d382aafbSBarry Smith     Concepts: error messages^printing
1620d382aafbSBarry Smith     Concepts: printing^error messages
1621d382aafbSBarry Smith 
1622c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf()
1623d382aafbSBarry Smith M*/
16247087cfbeSBarry Smith extern  PetscErrorCode (*PetscErrorPrintf)(const char[],...);
1625d382aafbSBarry Smith 
1626d382aafbSBarry Smith /*MC
1627d382aafbSBarry Smith     PetscHelpPrintf - Prints help messages.
1628d382aafbSBarry Smith 
1629d382aafbSBarry Smith    Synopsis:
1630d382aafbSBarry Smith      PetscErrorCode (*PetscHelpPrintf)(const char format[],...);
1631d382aafbSBarry Smith 
1632eca87e8dSBarry Smith     Not Collective
1633eca87e8dSBarry Smith 
1634d382aafbSBarry Smith     Input Parameters:
1635d382aafbSBarry Smith .   format - the usual printf() format string
1636d382aafbSBarry Smith 
1637d382aafbSBarry Smith    Level: developer
1638d382aafbSBarry Smith 
1639d382aafbSBarry Smith     Fortran Note:
1640d382aafbSBarry Smith     This routine is not supported in Fortran.
1641d382aafbSBarry Smith 
1642d382aafbSBarry Smith     Concepts: help messages^printing
1643d382aafbSBarry Smith     Concepts: printing^help messages
1644d382aafbSBarry Smith 
1645d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf()
1646d382aafbSBarry Smith M*/
16477087cfbeSBarry Smith extern  PetscErrorCode  (*PetscHelpPrintf)(MPI_Comm,const char[],...);
1648d382aafbSBarry Smith 
1649fcfd50ebSBarry Smith /*
1650fcfd50ebSBarry Smith      Defines PETSc profiling.
1651fcfd50ebSBarry Smith */
1652fcfd50ebSBarry Smith #include "petsclog.h"
1653fcfd50ebSBarry Smith 
1654fcfd50ebSBarry Smith /*
1655fcfd50ebSBarry Smith           For locking, unlocking and destroying AMS memories associated with  PETSc objects. ams.h is included in petscviewer.h
1656fcfd50ebSBarry Smith */
1657fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS)
1658fcfd50ebSBarry Smith extern PetscBool  PetscAMSPublishAll;
1659fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj)  ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem))
1660fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem))
1661fcfd50ebSBarry Smith #define PetscObjectDepublish(obj)   ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1;
1662fcfd50ebSBarry Smith #else
1663fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj)   0
1664fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj)  0
1665fcfd50ebSBarry Smith #define PetscObjectDepublish(obj)      0
1666fcfd50ebSBarry Smith #endif
1667fcfd50ebSBarry Smith 
1668fcfd50ebSBarry Smith /*
1669fcfd50ebSBarry Smith       Simple PETSc parallel IO for ASCII printing
1670fcfd50ebSBarry Smith */
1671fcfd50ebSBarry Smith extern PetscErrorCode   PetscFixFilename(const char[],char[]);
1672fcfd50ebSBarry Smith extern PetscErrorCode   PetscFOpen(MPI_Comm,const char[],const char[],FILE**);
1673fcfd50ebSBarry Smith extern PetscErrorCode   PetscFClose(MPI_Comm,FILE*);
1674fcfd50ebSBarry Smith extern PetscErrorCode   PetscFPrintf(MPI_Comm,FILE*,const char[],...);
1675fcfd50ebSBarry Smith extern PetscErrorCode   PetscPrintf(MPI_Comm,const char[],...);
1676fcfd50ebSBarry Smith extern PetscErrorCode   PetscSNPrintf(char*,size_t,const char [],...);
1677257d2499SJed Brown extern PetscErrorCode   PetscSNPrintfCount(char*,size_t,const char [],size_t*,...);
1678fcfd50ebSBarry Smith 
1679fcfd50ebSBarry Smith 
1680fcfd50ebSBarry Smith 
1681fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/
1682fcfd50ebSBarry Smith #include <stdarg.h>
1683fcfd50ebSBarry Smith extern PetscErrorCode   PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list);
1684fcfd50ebSBarry Smith extern PetscErrorCode   (*PetscVFPrintf)(FILE*,const char[],va_list);
1685fcfd50ebSBarry Smith extern PetscErrorCode   PetscVFPrintfDefault(FILE*,const char[],va_list);
1686fcfd50ebSBarry Smith 
1687fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE)
1688fcfd50ebSBarry Smith extern PetscErrorCode  PetscVFPrintf_Matlab(FILE*,const char[],va_list);
1689fcfd50ebSBarry Smith #endif
1690fcfd50ebSBarry Smith 
169109573ac7SBarry Smith extern PetscErrorCode  PetscErrorPrintfDefault(const char [],...);
169209573ac7SBarry Smith extern PetscErrorCode  PetscErrorPrintfNone(const char [],...);
169309573ac7SBarry Smith extern PetscErrorCode  PetscHelpPrintfDefault(MPI_Comm,const char [],...);
1694d382aafbSBarry Smith 
1695d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN)
16967087cfbeSBarry Smith extern PetscErrorCode   PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **);
16977087cfbeSBarry Smith extern PetscErrorCode   PetscPClose(MPI_Comm,FILE*);
1698d382aafbSBarry Smith #endif
1699d382aafbSBarry Smith 
17007087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedPrintf(MPI_Comm,const char[],...);
17017087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...);
17027087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedFlush(MPI_Comm);
17037087cfbeSBarry Smith extern PetscErrorCode   PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]);
17047087cfbeSBarry Smith extern PetscErrorCode   PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**);
17057087cfbeSBarry Smith extern PetscErrorCode   PetscStartJava(MPI_Comm,const char[],const char[],FILE**);
17067087cfbeSBarry Smith extern PetscErrorCode   PetscGetPetscDir(const char*[]);
1707d382aafbSBarry Smith 
17087087cfbeSBarry Smith extern PetscErrorCode   PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*);
1709d382aafbSBarry Smith 
1710d382aafbSBarry Smith /*S
1711d382aafbSBarry Smith      PetscContainer - Simple PETSc object that contains a pointer to any required data
1712d382aafbSBarry Smith 
1713d382aafbSBarry Smith    Level: advanced
1714d382aafbSBarry Smith 
1715d382aafbSBarry Smith .seealso:  PetscObject, PetscContainerCreate()
1716d382aafbSBarry Smith S*/
17177087cfbeSBarry Smith extern PetscClassId  PETSC_CONTAINER_CLASSID;
1718d382aafbSBarry Smith typedef struct _p_PetscContainer*  PetscContainer;
17197087cfbeSBarry Smith extern PetscErrorCode  PetscContainerGetPointer(PetscContainer,void **);
17207087cfbeSBarry Smith extern PetscErrorCode  PetscContainerSetPointer(PetscContainer,void *);
1721fcfd50ebSBarry Smith extern PetscErrorCode  PetscContainerDestroy(PetscContainer*);
17227087cfbeSBarry Smith extern PetscErrorCode  PetscContainerCreate(MPI_Comm,PetscContainer *);
17237087cfbeSBarry Smith extern PetscErrorCode  PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*));
1724d382aafbSBarry Smith 
1725d382aafbSBarry Smith /*
1726d382aafbSBarry Smith    For use in debuggers
1727d382aafbSBarry Smith */
17287087cfbeSBarry Smith extern  PetscMPIInt PetscGlobalRank;
17297087cfbeSBarry Smith extern  PetscMPIInt PetscGlobalSize;
17307087cfbeSBarry Smith extern PetscErrorCode  PetscIntView(PetscInt,const PetscInt[],PetscViewer);
17317087cfbeSBarry Smith extern PetscErrorCode  PetscRealView(PetscInt,const PetscReal[],PetscViewer);
17327087cfbeSBarry Smith extern PetscErrorCode  PetscScalarView(PetscInt,const PetscScalar[],PetscViewer);
1733d382aafbSBarry Smith 
1734d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H)
1735d382aafbSBarry Smith #include <memory.h>
1736d382aafbSBarry Smith #endif
1737d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H)
1738d382aafbSBarry Smith #include <stdlib.h>
1739d382aafbSBarry Smith #endif
1740d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H)
1741d382aafbSBarry Smith #include <strings.h>
1742d382aafbSBarry Smith #endif
1743d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H)
1744d382aafbSBarry Smith #include <string.h>
1745d382aafbSBarry Smith #endif
17466c7e564aSBarry Smith 
17476c7e564aSBarry Smith 
1748d382aafbSBarry Smith #if defined(PETSC_HAVE_XMMINTRIN_H)
1749d382aafbSBarry Smith #include <xmmintrin.h>
1750d382aafbSBarry Smith #endif
1751d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H)
1752d382aafbSBarry Smith #include <stdint.h>
1753d382aafbSBarry Smith #endif
1754d382aafbSBarry Smith 
1755fcfd50ebSBarry Smith #undef __FUNCT__
1756fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy"
1757d382aafbSBarry Smith /*@C
1758d382aafbSBarry Smith    PetscMemcpy - Copies n bytes, beginning at location b, to the space
1759d382aafbSBarry Smith    beginning at location a. The two memory regions CANNOT overlap, use
1760d382aafbSBarry Smith    PetscMemmove() in that case.
1761d382aafbSBarry Smith 
1762d382aafbSBarry Smith    Not Collective
1763d382aafbSBarry Smith 
1764d382aafbSBarry Smith    Input Parameters:
1765d382aafbSBarry Smith +  b - pointer to initial memory space
1766d382aafbSBarry Smith -  n - length (in bytes) of space to copy
1767d382aafbSBarry Smith 
1768d382aafbSBarry Smith    Output Parameter:
1769d382aafbSBarry Smith .  a - pointer to copy space
1770d382aafbSBarry Smith 
1771d382aafbSBarry Smith    Level: intermediate
1772d382aafbSBarry Smith 
1773d382aafbSBarry Smith    Compile Option:
1774d382aafbSBarry Smith     PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used
1775d382aafbSBarry Smith                                   for memory copies on double precision values.
1776d382aafbSBarry Smith     PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used
1777d382aafbSBarry Smith                                   for memory copies on double precision values.
1778d382aafbSBarry Smith     PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used
1779d382aafbSBarry Smith                                   for memory copies on double precision values.
1780d382aafbSBarry Smith 
1781d382aafbSBarry Smith    Note:
1782d382aafbSBarry Smith    This routine is analogous to memcpy().
1783d382aafbSBarry Smith 
1784503cfb0cSBarry Smith    Developer Note: this is inlined for fastest performance
1785503cfb0cSBarry Smith 
1786d382aafbSBarry Smith   Concepts: memory^copying
1787d382aafbSBarry Smith   Concepts: copying^memory
1788d382aafbSBarry Smith 
1789d382aafbSBarry Smith .seealso: PetscMemmove()
1790d382aafbSBarry Smith 
1791d382aafbSBarry Smith @*/
17927087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode  PetscMemcpy(void *a,const void *b,size_t n)
1793d382aafbSBarry Smith {
1794d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1795d382aafbSBarry Smith   unsigned long al = (unsigned long) a,bl = (unsigned long) b;
1796d382aafbSBarry Smith   unsigned long nl = (unsigned long) n;
1797a7e36092SMatthew G Knepley   PetscFunctionBegin;
1798e32f2f54SBarry Smith   if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer");
1799e32f2f54SBarry Smith   if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer");
1800a7e36092SMatthew G Knepley #else
1801d382aafbSBarry Smith   PetscFunctionBegin;
1802a7e36092SMatthew G Knepley #endif
1803d382aafbSBarry Smith   if (a != b) {
1804d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1805d382aafbSBarry Smith     if ((al > bl && (al - bl) < nl) || (bl - al) < nl) {
1806e32f2f54SBarry Smith       SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\
1807d382aafbSBarry Smith               or make sure your copy regions and lengths are correct. \n\
1808d382aafbSBarry Smith               Length (bytes) %ld first address %ld second address %ld",nl,al,bl);
1809d382aafbSBarry Smith     }
1810d382aafbSBarry Smith #endif
1811d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY))
1812d382aafbSBarry Smith    if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1813d382aafbSBarry Smith       size_t len = n/sizeof(PetscScalar);
1814d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY)
1815d382aafbSBarry Smith       PetscBLASInt one = 1,blen = PetscBLASIntCast(len);
1816d382aafbSBarry Smith       BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one);
1817d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY)
1818d382aafbSBarry Smith       fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a);
1819d382aafbSBarry Smith #else
1820d382aafbSBarry Smith       size_t      i;
1821d382aafbSBarry Smith       PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a;
1822d382aafbSBarry Smith       for (i=0; i<len; i++) y[i] = x[i];
1823d382aafbSBarry Smith #endif
1824d382aafbSBarry Smith     } else {
1825d382aafbSBarry Smith       memcpy((char*)(a),(char*)(b),n);
1826d382aafbSBarry Smith     }
1827d382aafbSBarry Smith #else
1828d382aafbSBarry Smith     memcpy((char*)(a),(char*)(b),n);
1829d382aafbSBarry Smith #endif
1830d382aafbSBarry Smith   }
1831d382aafbSBarry Smith   PetscFunctionReturn(0);
1832d382aafbSBarry Smith }
1833d382aafbSBarry Smith 
1834d382aafbSBarry Smith /*@C
1835d382aafbSBarry Smith    PetscMemzero - Zeros the specified memory.
1836d382aafbSBarry Smith 
1837d382aafbSBarry Smith    Not Collective
1838d382aafbSBarry Smith 
1839d382aafbSBarry Smith    Input Parameters:
1840d382aafbSBarry Smith +  a - pointer to beginning memory location
1841d382aafbSBarry Smith -  n - length (in bytes) of memory to initialize
1842d382aafbSBarry Smith 
1843d382aafbSBarry Smith    Level: intermediate
1844d382aafbSBarry Smith 
1845d382aafbSBarry Smith    Compile Option:
1846d382aafbSBarry Smith    PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens
1847d382aafbSBarry Smith   to be faster than the memset() routine. This flag causes the bzero() routine to be used.
1848d382aafbSBarry Smith 
1849503cfb0cSBarry Smith    Developer Note: this is inlined for fastest performance
1850503cfb0cSBarry Smith 
1851d382aafbSBarry Smith    Concepts: memory^zeroing
1852d382aafbSBarry Smith    Concepts: zeroing^memory
1853d382aafbSBarry Smith 
1854d382aafbSBarry Smith .seealso: PetscMemcpy()
1855d382aafbSBarry Smith @*/
18567087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode  PetscMemzero(void *a,size_t n)
1857d382aafbSBarry Smith {
1858d382aafbSBarry Smith   if (n > 0) {
1859d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1860e32f2f54SBarry Smith     if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer");
1861d382aafbSBarry Smith #endif
1862d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO)
1863d382aafbSBarry Smith     if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1864d382aafbSBarry Smith       size_t      i,len = n/sizeof(PetscScalar);
1865d382aafbSBarry Smith       PetscScalar *x = (PetscScalar*)a;
1866d382aafbSBarry Smith       for (i=0; i<len; i++) x[i] = 0.0;
1867d382aafbSBarry Smith     } else {
1868d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO)
1869d382aafbSBarry Smith     if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1870d382aafbSBarry Smith       PetscInt len = n/sizeof(PetscScalar);
1871d382aafbSBarry Smith       fortranzero_(&len,(PetscScalar*)a);
1872d382aafbSBarry Smith     } else {
1873d382aafbSBarry Smith #endif
1874d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO)
1875d382aafbSBarry Smith       bzero((char *)a,n);
1876d382aafbSBarry Smith #else
1877d382aafbSBarry Smith       memset((char*)a,0,n);
1878d382aafbSBarry Smith #endif
1879d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO)
1880d382aafbSBarry Smith     }
1881d382aafbSBarry Smith #endif
1882d382aafbSBarry Smith   }
1883d382aafbSBarry Smith   return 0;
1884d382aafbSBarry Smith }
1885d382aafbSBarry Smith 
1886d382aafbSBarry Smith /*MC
1887d382aafbSBarry Smith    PetscPrefetchBlock - Prefetches a block of memory
1888d382aafbSBarry Smith 
1889eca87e8dSBarry Smith    Synopsis:
1890eca87e8dSBarry Smith     void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t)
1891eca87e8dSBarry Smith 
1892d382aafbSBarry Smith    Not Collective
1893d382aafbSBarry Smith 
1894d382aafbSBarry Smith    Input Parameters:
1895d382aafbSBarry Smith +  a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar)
1896d382aafbSBarry Smith .  n - number of elements to fetch
1897d382aafbSBarry Smith .  rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors)
189850d8bf02SJed Brown -  t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note
1899d382aafbSBarry Smith 
1900d382aafbSBarry Smith    Level: developer
1901d382aafbSBarry Smith 
1902d382aafbSBarry Smith    Notes:
1903d382aafbSBarry Smith    The last two arguments (rw and t) must be compile-time constants.
1904d382aafbSBarry Smith 
190550d8bf02SJed Brown    Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality.  Not all architectures offer
190650d8bf02SJed Brown    equivalent locality hints, but the following macros are always defined to their closest analogue.
190750d8bf02SJed Brown +  PETSC_PREFETCH_HINT_NTA - Non-temporal.  Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched).
190863cf1ef0SJed Brown .  PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level.  Use this when the memory will be reused regularly despite necessary eviction from L1.
190963cf1ef0SJed Brown .  PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1).
191063cf1ef0SJed Brown -  PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only.  (On many systems, T0 and T1 are equivalent.)
1911d382aafbSBarry Smith 
1912d382aafbSBarry Smith    This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid
1913d382aafbSBarry Smith    address).
1914d382aafbSBarry Smith 
1915d382aafbSBarry Smith    Concepts: memory
1916d382aafbSBarry Smith M*/
1917d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do {                               \
1918d382aafbSBarry Smith     const char *_p = (const char*)(a),*_end = (const char*)((a)+(n));   \
1919d382aafbSBarry Smith     for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \
1920d382aafbSBarry Smith   } while (0)
1921d382aafbSBarry Smith 
1922d382aafbSBarry Smith /*
1923e3c5b3baSBarry Smith     Allows accessing MATLAB Engine
1924d382aafbSBarry Smith */
1925d382aafbSBarry Smith #include "petscmatlab.h"
1926d382aafbSBarry Smith 
1927d382aafbSBarry Smith /*
1928d382aafbSBarry Smith       Determine if some of the kernel computation routines use
1929d382aafbSBarry Smith    Fortran (rather than C) for the numerical calculations. On some machines
1930d382aafbSBarry Smith    and compilers (like complex numbers) the Fortran version of the routines
1931d382aafbSBarry Smith    is faster than the C/C++ versions. The flag --with-fortran-kernels
1932e2e64c6bSBarry Smith    should be used with ./configure to turn these on.
1933d382aafbSBarry Smith */
1934d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS)
1935d382aafbSBarry Smith 
1936d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL)
1937d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL
1938d382aafbSBarry Smith #endif
1939d382aafbSBarry Smith 
19405a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM)
19415a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM
1942d382aafbSBarry Smith #endif
1943d382aafbSBarry Smith 
1944d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ)
1945d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ
1946d382aafbSBarry Smith #endif
1947d382aafbSBarry Smith 
1948d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ)
1949d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ
1950d382aafbSBarry Smith #endif
1951d382aafbSBarry Smith 
1952d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM)
1953d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM
1954d382aafbSBarry Smith #endif
1955d382aafbSBarry Smith 
1956d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY)
1957d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY
1958d382aafbSBarry Smith #endif
1959d382aafbSBarry Smith 
1960d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ)
1961d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ
1962d382aafbSBarry Smith #endif
1963d382aafbSBarry Smith 
1964d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ)
1965d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ
1966d382aafbSBarry Smith #endif
1967d382aafbSBarry Smith 
1968d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ)
1969d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ
1970d382aafbSBarry Smith #endif
1971d382aafbSBarry Smith 
1972d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ)
1973d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ
1974d382aafbSBarry Smith #endif
1975d382aafbSBarry Smith 
1976d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT)
1977d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT
1978d382aafbSBarry Smith #endif
1979d382aafbSBarry Smith 
1980d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY)
1981d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY
1982d382aafbSBarry Smith #endif
1983d382aafbSBarry Smith 
1984d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX)
1985d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX
1986d382aafbSBarry Smith #endif
1987d382aafbSBarry Smith 
1988d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY)
1989d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY
1990d382aafbSBarry Smith #endif
1991d382aafbSBarry Smith 
1992d382aafbSBarry Smith #endif
1993d382aafbSBarry Smith 
1994d382aafbSBarry Smith /*
1995d382aafbSBarry Smith     Macros for indicating code that should be compiled with a C interface,
1996d382aafbSBarry Smith    rather than a C++ interface. Any routines that are dynamically loaded
1997d382aafbSBarry Smith    (such as the PCCreate_XXX() routines) must be wrapped so that the name
1998d382aafbSBarry Smith    mangler does not change the functions symbol name. This just hides the
1999d382aafbSBarry Smith    ugly extern "C" {} wrappers.
2000d382aafbSBarry Smith */
2001d382aafbSBarry Smith #if defined(__cplusplus)
2002da861ed6SJed Brown #define PETSC_EXTERN_C extern "C"
2003d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" {
2004d382aafbSBarry Smith #define EXTERN_C_END }
2005d382aafbSBarry Smith #else
2006da861ed6SJed Brown #define PETSC_EXTERN_C
2007d382aafbSBarry Smith #define EXTERN_C_BEGIN
2008d382aafbSBarry Smith #define EXTERN_C_END
2009d382aafbSBarry Smith #endif
2010d382aafbSBarry Smith 
2011d382aafbSBarry Smith /* --------------------------------------------------------------------*/
2012d382aafbSBarry Smith 
2013d382aafbSBarry Smith /*MC
2014d382aafbSBarry Smith     MPI_Comm - the basic object used by MPI to determine which processes are involved in a
2015d382aafbSBarry Smith         communication
2016d382aafbSBarry Smith 
2017d382aafbSBarry Smith    Level: beginner
2018d382aafbSBarry Smith 
2019d382aafbSBarry Smith    Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm
2020d382aafbSBarry Smith 
2021d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF
2022d382aafbSBarry Smith M*/
2023d382aafbSBarry Smith 
2024d382aafbSBarry Smith /*MC
2025d382aafbSBarry Smith     PetscScalar - PETSc type that represents either a double precision real number, a double precision
2026d382aafbSBarry Smith        complex number, a single precision real number, a long double or an int - if the code is configured
2027d382aafbSBarry Smith        with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle
2028d382aafbSBarry Smith 
2029d382aafbSBarry Smith 
2030d382aafbSBarry Smith    Level: beginner
2031d382aafbSBarry Smith 
2032d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt
2033d382aafbSBarry Smith M*/
2034d382aafbSBarry Smith 
2035d382aafbSBarry Smith /*MC
2036d382aafbSBarry Smith     PetscReal - PETSc type that represents a real number version of PetscScalar
2037d382aafbSBarry Smith 
2038d382aafbSBarry Smith    Level: beginner
2039d382aafbSBarry Smith 
2040d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar
2041d382aafbSBarry Smith M*/
2042d382aafbSBarry Smith 
2043d382aafbSBarry Smith /*MC
2044d382aafbSBarry Smith     PassiveScalar - PETSc type that represents a PetscScalar
2045d382aafbSBarry Smith    Level: beginner
2046d382aafbSBarry Smith 
2047d382aafbSBarry Smith     This is the same as a PetscScalar except in code that is automatically differentiated it is
2048d382aafbSBarry Smith    treated as a constant (not an indendent or dependent variable)
2049d382aafbSBarry Smith 
2050d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar
2051d382aafbSBarry Smith M*/
2052d382aafbSBarry Smith 
2053d382aafbSBarry Smith /*MC
2054d382aafbSBarry Smith     PassiveReal - PETSc type that represents a PetscReal
2055d382aafbSBarry Smith 
2056d382aafbSBarry Smith    Level: beginner
2057d382aafbSBarry Smith 
2058d382aafbSBarry Smith     This is the same as a PetscReal except in code that is automatically differentiated it is
2059d382aafbSBarry Smith    treated as a constant (not an indendent or dependent variable)
2060d382aafbSBarry Smith 
2061d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar
2062d382aafbSBarry Smith M*/
2063d382aafbSBarry Smith 
2064d382aafbSBarry Smith /*MC
2065d382aafbSBarry Smith     MPIU_SCALAR - MPI datatype corresponding to PetscScalar
2066d382aafbSBarry Smith 
2067d382aafbSBarry Smith    Level: beginner
2068d382aafbSBarry Smith 
2069d382aafbSBarry Smith     Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars
2070d382aafbSBarry Smith           pass this value
2071d382aafbSBarry Smith 
2072d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT
2073d382aafbSBarry Smith M*/
2074d382aafbSBarry Smith 
2075d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO)
2076d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN)
2077d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*);
2078d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*);
2079d382aafbSBarry Smith #else
2080d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e)
2081d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e)
2082d382aafbSBarry Smith #endif
2083d382aafbSBarry Smith #endif
2084d382aafbSBarry Smith 
2085d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */
2086d382aafbSBarry Smith 
2087d382aafbSBarry Smith /* Limit MPI to 32-bits */
2088d382aafbSBarry Smith #define PETSC_MPI_INT_MAX  2147483647
2089d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647
2090d382aafbSBarry Smith /* Limit BLAS to 32-bits */
2091d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX  2147483647
2092d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647
2093d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */
2094d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX  2147483647
2095d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647
2096d382aafbSBarry Smith 
2097d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES)
2098e32f2f54SBarry Smith #define PetscMPIIntCheck(a)  if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI")
2099e32f2f54SBarry Smith #define PetscBLASIntCheck(a)  if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK")
2100eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a)
2101eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a)
2102d382aafbSBarry Smith 
2103d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4)
2104e32f2f54SBarry Smith #define PetscHDF5IntCheck(a)  if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5")
2105eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a)
2106d382aafbSBarry Smith #else
2107d382aafbSBarry Smith #define PetscHDF5IntCheck(a)
2108d382aafbSBarry Smith #define PetscHDF5IntCast(a) a
2109d382aafbSBarry Smith #endif
2110d382aafbSBarry Smith 
2111d382aafbSBarry Smith #else
2112d382aafbSBarry Smith #define PetscMPIIntCheck(a)
2113d382aafbSBarry Smith #define PetscBLASIntCheck(a)
2114d382aafbSBarry Smith #define PetscHDF5IntCheck(a)
2115d382aafbSBarry Smith #define PetscMPIIntCast(a) a
2116d382aafbSBarry Smith #define PetscBLASIntCast(a) a
2117d382aafbSBarry Smith #define PetscHDF5IntCast(a) a
2118d382aafbSBarry Smith #endif
2119d382aafbSBarry Smith 
2120d382aafbSBarry Smith 
2121d382aafbSBarry Smith /*
2122d382aafbSBarry Smith      The IBM include files define hz, here we hide it so that it may be used
2123d382aafbSBarry Smith    as a regular user variable.
2124d382aafbSBarry Smith */
2125d382aafbSBarry Smith #if defined(hz)
2126d382aafbSBarry Smith #undef hz
2127d382aafbSBarry Smith #endif
2128d382aafbSBarry Smith 
2129d382aafbSBarry Smith /*  For arrays that contain filenames or paths */
2130d382aafbSBarry Smith 
2131d382aafbSBarry Smith 
2132d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H)
2133d382aafbSBarry Smith #include <limits.h>
2134d382aafbSBarry Smith #endif
2135d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H)
2136d382aafbSBarry Smith #include <sys/param.h>
2137d382aafbSBarry Smith #endif
2138d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H)
2139d382aafbSBarry Smith #include <sys/types.h>
2140d382aafbSBarry Smith #endif
2141d382aafbSBarry Smith #if defined(MAXPATHLEN)
2142d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     MAXPATHLEN
2143d382aafbSBarry Smith #elif defined(MAX_PATH)
2144d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     MAX_PATH
2145d382aafbSBarry Smith #elif defined(_MAX_PATH)
2146d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     _MAX_PATH
2147d382aafbSBarry Smith #else
2148d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     4096
2149d382aafbSBarry Smith #endif
2150d382aafbSBarry Smith 
2151d382aafbSBarry Smith /* Special support for C++ */
2152d382aafbSBarry Smith #include "petscsys.hh"
21536c7e564aSBarry Smith 
2154d382aafbSBarry Smith 
2155d382aafbSBarry Smith /*MC
2156d382aafbSBarry Smith 
2157d382aafbSBarry Smith     UsingFortran - Fortran can be used with PETSc in four distinct approaches
2158d382aafbSBarry Smith 
2159d382aafbSBarry Smith $    1) classic Fortran 77 style
2160d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc
2161d382aafbSBarry Smith $       XXX variablename
2162d382aafbSBarry Smith $      You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines
2163d382aafbSBarry Smith $      which end in F90; such as VecGetArrayF90()
2164d382aafbSBarry Smith $
2165d382aafbSBarry Smith $    2) classic Fortran 90 style
2166d1716517SSatish Balay $#include "finclude/petscXXX.h"
2167d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc
2168d382aafbSBarry Smith $       XXX variablename
2169d382aafbSBarry Smith $
2170d382aafbSBarry Smith $    3) Using Fortran modules
2171d1716517SSatish Balay $#include "finclude/petscXXXdef.h"
2172d382aafbSBarry Smith $         use petscXXXX
2173d382aafbSBarry Smith $       XXX variablename
2174d382aafbSBarry Smith $
2175d382aafbSBarry Smith $    4) Use Fortran modules and Fortran data types for PETSc types
2176d1716517SSatish Balay $#include "finclude/petscXXXdef.h"
2177d382aafbSBarry Smith $         use petscXXXX
2178d382aafbSBarry Smith $       type(XXX) variablename
2179e2e64c6bSBarry Smith $      To use this approach you must ./configure PETSc with the additional
2180d382aafbSBarry Smith $      option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules
2181d382aafbSBarry Smith 
2182d382aafbSBarry Smith     Finally if you absolutely do not want to use any #include you can use either
2183d382aafbSBarry Smith 
2184d382aafbSBarry Smith $    3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc
2185d382aafbSBarry Smith $        and you must declare the variables as integer, for example
2186d382aafbSBarry Smith $        integer variablename
2187d382aafbSBarry Smith $
2188d382aafbSBarry Smith $    4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type
2189d382aafbSBarry Smith $        names like PetscErrorCode, PetscInt etc. again for those you must use integer
2190d382aafbSBarry Smith 
2191d382aafbSBarry Smith    We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking
2192d382aafbSBarry Smith for only a few PETSc functions.
2193d382aafbSBarry Smith 
2194d382aafbSBarry Smith    Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value
2195d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues()
2196d382aafbSBarry Smith you cannot have something like
2197d382aafbSBarry Smith $      PetscInt row,col
2198d382aafbSBarry Smith $      PetscScalar val
2199d382aafbSBarry Smith $        ...
2200d382aafbSBarry Smith $      call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr)
2201d382aafbSBarry Smith You must instead have
2202d382aafbSBarry Smith $      PetscInt row(1),col(1)
2203d382aafbSBarry Smith $      PetscScalar val(1)
2204d382aafbSBarry Smith $        ...
2205d382aafbSBarry Smith $      call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr)
2206d382aafbSBarry Smith 
2207d382aafbSBarry Smith 
2208d382aafbSBarry Smith     See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches
2209d382aafbSBarry Smith 
2210d382aafbSBarry Smith     Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these
2211d382aafbSBarry Smith      automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h
2212d382aafbSBarry Smith 
2213d382aafbSBarry Smith      The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include
2214d382aafbSBarry Smith      their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors;  for example
2215d382aafbSBarry Smith      finclude/petscvec.h does NOT automatically include finclude/petscis.h
2216d382aafbSBarry Smith 
2217d382aafbSBarry Smith      The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the
2218e2e64c6bSBarry Smith      Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option.
2219d382aafbSBarry Smith 
2220d382aafbSBarry Smith      The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for
2221d382aafbSBarry Smith      the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90).
2222d382aafbSBarry Smith 
2223d382aafbSBarry Smith      The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated
2224d382aafbSBarry Smith      automatically by "make allfortranstubs".
2225d382aafbSBarry Smith 
2226e2e64c6bSBarry Smith      The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure
2227d382aafbSBarry Smith      was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically
2228d382aafbSBarry Smith      include their predecessors
2229d382aafbSBarry Smith 
2230d382aafbSBarry Smith     Level: beginner
2231d382aafbSBarry Smith 
2232d382aafbSBarry Smith M*/
2233d382aafbSBarry Smith 
22347087cfbeSBarry Smith extern PetscErrorCode  PetscGetArchType(char[],size_t);
22357087cfbeSBarry Smith extern PetscErrorCode  PetscGetHostName(char[],size_t);
22367087cfbeSBarry Smith extern PetscErrorCode  PetscGetUserName(char[],size_t);
22377087cfbeSBarry Smith extern PetscErrorCode  PetscGetProgramName(char[],size_t);
22387087cfbeSBarry Smith extern PetscErrorCode  PetscSetProgramName(const char[]);
22397087cfbeSBarry Smith extern PetscErrorCode  PetscGetDate(char[],size_t);
2240d382aafbSBarry Smith 
22417087cfbeSBarry Smith extern PetscErrorCode  PetscSortInt(PetscInt,PetscInt[]);
22427087cfbeSBarry Smith extern PetscErrorCode  PetscSortRemoveDupsInt(PetscInt*,PetscInt[]);
22437087cfbeSBarry Smith extern PetscErrorCode  PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]);
22447087cfbeSBarry Smith extern PetscErrorCode  PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]);
22457087cfbeSBarry Smith extern PetscErrorCode  PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]);
2246d7aa01a8SHong Zhang extern PetscErrorCode  PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*);
22477087cfbeSBarry Smith extern PetscErrorCode  PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]);
22487087cfbeSBarry Smith extern PetscErrorCode  PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]);
22497087cfbeSBarry Smith extern PetscErrorCode  PetscSortReal(PetscInt,PetscReal[]);
22507087cfbeSBarry Smith extern PetscErrorCode  PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]);
22517087cfbeSBarry Smith extern PetscErrorCode  PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]);
22527087cfbeSBarry Smith extern PetscErrorCode  PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]);
22537087cfbeSBarry Smith extern PetscErrorCode  PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**);
22549b67c4b3SDmitry Karpeev extern PetscErrorCode  PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**);
2255d382aafbSBarry Smith 
22567087cfbeSBarry Smith extern PetscErrorCode  PetscSetDisplay(void);
22577087cfbeSBarry Smith extern PetscErrorCode  PetscGetDisplay(char[],size_t);
2258d382aafbSBarry Smith 
225976bdecfbSBarry Smith /*J
2260d382aafbSBarry Smith     PetscRandomType - String with the name of a PETSc randomizer
2261d382aafbSBarry Smith        with an optional dynamic library name, for example
2262d382aafbSBarry Smith        http://www.mcs.anl.gov/petsc/lib.a:myrandcreate()
2263d382aafbSBarry Smith 
2264d382aafbSBarry Smith    Level: beginner
2265d382aafbSBarry Smith 
2266e2e64c6bSBarry Smith    Notes: to use the SPRNG you must have ./configure PETSc
2267d382aafbSBarry Smith    with the option --download-sprng
2268d382aafbSBarry Smith 
2269d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom
227076bdecfbSBarry Smith J*/
2271d382aafbSBarry Smith #define PetscRandomType char*
2272d382aafbSBarry Smith #define PETSCRAND       "rand"
2273d382aafbSBarry Smith #define PETSCRAND48     "rand48"
2274d382aafbSBarry Smith #define PETSCSPRNG      "sprng"
2275d382aafbSBarry Smith 
2276d382aafbSBarry Smith /* Logging support */
22777087cfbeSBarry Smith extern  PetscClassId PETSC_RANDOM_CLASSID;
2278d382aafbSBarry Smith 
22797087cfbeSBarry Smith extern PetscErrorCode  PetscRandomInitializePackage(const char[]);
2280d382aafbSBarry Smith 
2281d382aafbSBarry Smith /*S
2282d382aafbSBarry Smith      PetscRandom - Abstract PETSc object that manages generating random numbers
2283d382aafbSBarry Smith 
2284d382aafbSBarry Smith    Level: intermediate
2285d382aafbSBarry Smith 
2286d382aafbSBarry Smith   Concepts: random numbers
2287d382aafbSBarry Smith 
2288d382aafbSBarry Smith .seealso:  PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType
2289d382aafbSBarry Smith S*/
2290d382aafbSBarry Smith typedef struct _p_PetscRandom*   PetscRandom;
2291d382aafbSBarry Smith 
2292d382aafbSBarry Smith /* Dynamic creation and loading functions */
2293d382aafbSBarry Smith extern PetscFList PetscRandomList;
2294ace3abfcSBarry Smith extern PetscBool  PetscRandomRegisterAllCalled;
2295d382aafbSBarry Smith 
22967087cfbeSBarry Smith extern PetscErrorCode  PetscRandomRegisterAll(const char []);
22977087cfbeSBarry Smith extern PetscErrorCode  PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom));
22987087cfbeSBarry Smith extern PetscErrorCode  PetscRandomRegisterDestroy(void);
22997087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetType(PetscRandom, const PetscRandomType);
23007087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetFromOptions(PetscRandom);
23017087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetType(PetscRandom, const PetscRandomType*);
23027087cfbeSBarry Smith extern PetscErrorCode  PetscRandomViewFromOptions(PetscRandom,char*);
23037087cfbeSBarry Smith extern PetscErrorCode  PetscRandomView(PetscRandom,PetscViewer);
2304d382aafbSBarry Smith 
2305d382aafbSBarry Smith /*MC
2306d382aafbSBarry Smith   PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation
2307d382aafbSBarry Smith 
2308d382aafbSBarry Smith   Synopsis:
23091890ba74SBarry Smith   PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom))
2310d382aafbSBarry Smith 
2311d382aafbSBarry Smith   Not Collective
2312d382aafbSBarry Smith 
2313d382aafbSBarry Smith   Input Parameters:
2314d382aafbSBarry Smith + name        - The name of a new user-defined creation routine
2315d382aafbSBarry Smith . path        - The path (either absolute or relative) of the library containing this routine
2316d382aafbSBarry Smith . func_name   - The name of routine to create method context
2317d382aafbSBarry Smith - create_func - The creation routine itself
2318d382aafbSBarry Smith 
2319d382aafbSBarry Smith   Notes:
2320d382aafbSBarry Smith   PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators
2321d382aafbSBarry Smith 
2322d382aafbSBarry Smith   If dynamic libraries are used, then the fourth input argument (routine_create) is ignored.
2323d382aafbSBarry Smith 
2324d382aafbSBarry Smith   Sample usage:
2325d382aafbSBarry Smith .vb
2326d382aafbSBarry Smith     PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate);
2327d382aafbSBarry Smith .ve
2328d382aafbSBarry Smith 
2329d382aafbSBarry Smith   Then, your random type can be chosen with the procedural interface via
2330d382aafbSBarry Smith .vb
2331d382aafbSBarry Smith     PetscRandomCreate(MPI_Comm, PetscRandom *);
2332d382aafbSBarry Smith     PetscRandomSetType(PetscRandom,"my_random_name");
2333d382aafbSBarry Smith .ve
2334d382aafbSBarry Smith    or at runtime via the option
2335d382aafbSBarry Smith .vb
2336d382aafbSBarry Smith     -random_type my_random_name
2337d382aafbSBarry Smith .ve
2338d382aafbSBarry Smith 
2339d382aafbSBarry Smith   Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values.
2340d382aafbSBarry Smith 
2341d382aafbSBarry Smith          For an example of the code needed to interface your own random number generator see
2342d382aafbSBarry Smith          src/sys/random/impls/rand/rand.c
2343d382aafbSBarry Smith 
2344d382aafbSBarry Smith   Level: advanced
2345d382aafbSBarry Smith 
2346d382aafbSBarry Smith .keywords: PetscRandom, register
2347d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister()
2348d382aafbSBarry Smith M*/
2349d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
2350d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0)
2351d382aafbSBarry Smith #else
2352d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d)
2353d382aafbSBarry Smith #endif
2354d382aafbSBarry Smith 
23557087cfbeSBarry Smith extern PetscErrorCode  PetscRandomCreate(MPI_Comm,PetscRandom*);
23567087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetValue(PetscRandom,PetscScalar*);
23577087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetValueReal(PetscRandom,PetscReal*);
23587087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*);
23597087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar);
23607087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSetSeed(PetscRandom,unsigned long);
23617087cfbeSBarry Smith extern PetscErrorCode  PetscRandomGetSeed(PetscRandom,unsigned long *);
23627087cfbeSBarry Smith extern PetscErrorCode  PetscRandomSeed(PetscRandom);
2363fcfd50ebSBarry Smith extern PetscErrorCode  PetscRandomDestroy(PetscRandom*);
2364d382aafbSBarry Smith 
23657087cfbeSBarry Smith extern PetscErrorCode  PetscGetFullPath(const char[],char[],size_t);
23667087cfbeSBarry Smith extern PetscErrorCode  PetscGetRelativePath(const char[],char[],size_t);
23677087cfbeSBarry Smith extern PetscErrorCode  PetscGetWorkingDirectory(char[],size_t);
23687087cfbeSBarry Smith extern PetscErrorCode  PetscGetRealPath(const char[],char[]);
23697087cfbeSBarry Smith extern PetscErrorCode  PetscGetHomeDirectory(char[],size_t);
23707087cfbeSBarry Smith extern PetscErrorCode  PetscTestFile(const char[],char,PetscBool *);
23717087cfbeSBarry Smith extern PetscErrorCode  PetscTestDirectory(const char[],char,PetscBool *);
2372d382aafbSBarry Smith 
23737087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryRead(int,void*,PetscInt,PetscDataType);
23747087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType);
23757087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool );
23767087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool );
23777087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryOpen(const char[],PetscFileMode,int *);
23787087cfbeSBarry Smith extern PetscErrorCode  PetscBinaryClose(int);
23797087cfbeSBarry Smith extern PetscErrorCode  PetscSharedTmp(MPI_Comm,PetscBool  *);
23807087cfbeSBarry Smith extern PetscErrorCode  PetscSharedWorkingDirectory(MPI_Comm,PetscBool  *);
23817087cfbeSBarry Smith extern PetscErrorCode  PetscGetTmp(MPI_Comm,char[],size_t);
23827087cfbeSBarry Smith extern PetscErrorCode  PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *);
23837087cfbeSBarry Smith extern PetscErrorCode  PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *);
23847087cfbeSBarry Smith extern PetscErrorCode  PetscOpenSocket(char*,int,int*);
23857087cfbeSBarry Smith extern PetscErrorCode  PetscWebServe(MPI_Comm,int);
2386d382aafbSBarry Smith 
2387d382aafbSBarry Smith /*
2388d382aafbSBarry Smith    In binary files variables are stored using the following lengths,
2389d382aafbSBarry Smith   regardless of how they are stored in memory on any one particular
2390d382aafbSBarry Smith   machine. Use these rather then sizeof() in computing sizes for
2391d382aafbSBarry Smith   PetscBinarySeek().
2392d382aafbSBarry Smith */
2393d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE   (32/8)
2394d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE  (32/8)
2395d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE  (8/8)
2396d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE  (16/8)
2397d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE  (64/8)
2398d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE  sizeof(PetscScalar)
2399d382aafbSBarry Smith 
2400d382aafbSBarry Smith /*E
2401d382aafbSBarry Smith   PetscBinarySeekType - argument to PetscBinarySeek()
2402d382aafbSBarry Smith 
2403d382aafbSBarry Smith   Level: advanced
2404d382aafbSBarry Smith 
2405d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek()
2406d382aafbSBarry Smith E*/
2407d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType;
24087087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*);
24097087cfbeSBarry Smith extern PetscErrorCode  PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*);
241046090da6SBarry Smith extern PetscErrorCode  PetscByteSwap(void *,PetscDataType,PetscInt);
2411d382aafbSBarry Smith 
24127087cfbeSBarry Smith extern PetscErrorCode  PetscSetDebugTerminal(const char[]);
24137087cfbeSBarry Smith extern PetscErrorCode  PetscSetDebugger(const char[],PetscBool );
24147087cfbeSBarry Smith extern PetscErrorCode  PetscSetDefaultDebugger(void);
24157087cfbeSBarry Smith extern PetscErrorCode  PetscSetDebuggerFromString(char*);
24167087cfbeSBarry Smith extern PetscErrorCode  PetscAttachDebugger(void);
24177087cfbeSBarry Smith extern PetscErrorCode  PetscStopForDebugger(void);
2418d382aafbSBarry Smith 
24197087cfbeSBarry Smith extern PetscErrorCode  PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*);
24207087cfbeSBarry Smith extern PetscErrorCode  PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**);
24217087cfbeSBarry Smith extern PetscErrorCode  PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**);
24227087cfbeSBarry Smith extern PetscErrorCode  PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**);
24237087cfbeSBarry Smith extern PetscErrorCode  PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**);
2424d382aafbSBarry Smith 
24257087cfbeSBarry Smith extern PetscErrorCode  PetscSSEIsEnabled(MPI_Comm,PetscBool  *,PetscBool  *);
2426d382aafbSBarry Smith 
2427d382aafbSBarry Smith /*E
2428d382aafbSBarry Smith   InsertMode - Whether entries are inserted or added into vectors or matrices
2429d382aafbSBarry Smith 
2430d382aafbSBarry Smith   Level: beginner
2431d382aafbSBarry Smith 
2432d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2433d382aafbSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(),
2434d382aafbSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd()
2435d382aafbSBarry Smith E*/
243611f088b5SMatthew G Knepley  typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode;
2437d382aafbSBarry Smith 
2438d382aafbSBarry Smith /*MC
2439d382aafbSBarry Smith     INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value
2440d382aafbSBarry Smith 
2441d382aafbSBarry Smith     Level: beginner
2442d382aafbSBarry Smith 
2443d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2444eca87e8dSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES,
2445eca87e8dSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES
2446d382aafbSBarry Smith 
2447d382aafbSBarry Smith M*/
2448d382aafbSBarry Smith 
2449d382aafbSBarry Smith /*MC
2450d382aafbSBarry Smith     ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the
2451d382aafbSBarry Smith                 value into that location
2452d382aafbSBarry Smith 
2453d382aafbSBarry Smith     Level: beginner
2454d382aafbSBarry Smith 
2455d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2456eca87e8dSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES,
2457eca87e8dSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES
2458d382aafbSBarry Smith 
2459d382aafbSBarry Smith M*/
2460d382aafbSBarry Smith 
2461d382aafbSBarry Smith /*MC
2462d382aafbSBarry Smith     MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location
2463d382aafbSBarry Smith 
2464d382aafbSBarry Smith     Level: beginner
2465d382aafbSBarry Smith 
2466d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES
2467d382aafbSBarry Smith 
2468d382aafbSBarry Smith M*/
2469d382aafbSBarry Smith 
2470d382aafbSBarry Smith /*S
2471d382aafbSBarry Smith    PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT
2472d382aafbSBarry Smith 
2473d382aafbSBarry Smith    Level: advanced
2474d382aafbSBarry Smith 
2475d382aafbSBarry Smith    Concepts: communicator, create
2476d382aafbSBarry Smith S*/
2477d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm;
2478d382aafbSBarry Smith 
2479d382aafbSBarry Smith struct _n_PetscSubcomm {
2480d382aafbSBarry Smith   MPI_Comm   parent;      /* parent communicator */
2481d382aafbSBarry Smith   MPI_Comm   dupparent;   /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */
2482d382aafbSBarry Smith   MPI_Comm   comm;        /* this communicator */
2483d382aafbSBarry Smith   PetscInt   n;           /* num of subcommunicators under the parent communicator */
2484d382aafbSBarry Smith   PetscInt   color;       /* color of processors belong to this communicator */
2485d382aafbSBarry Smith };
2486d382aafbSBarry Smith 
2487638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType;
2488638faf0bSHong Zhang extern const char *PetscSubcommTypes[];
2489638faf0bSHong Zhang 
24907087cfbeSBarry Smith extern PetscErrorCode  PetscSubcommCreate(MPI_Comm,PetscSubcomm*);
2491fcfd50ebSBarry Smith extern PetscErrorCode  PetscSubcommDestroy(PetscSubcomm*);
24927087cfbeSBarry Smith extern PetscErrorCode  PetscSubcommSetNumber(PetscSubcomm,PetscInt);
24937087cfbeSBarry Smith extern PetscErrorCode  PetscSubcommSetType(PetscSubcomm,const PetscSubcommType);
24947087cfbeSBarry Smith extern PetscErrorCode  PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt);
2495d382aafbSBarry Smith 
249682a7e548SBarry Smith #include <petscctable.h>
249782a7e548SBarry Smith 
2498d382aafbSBarry Smith PETSC_EXTERN_CXX_END
24996c7e564aSBarry Smith 
25009e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */
25019e03d832SJed Brown #undef __FUNCT__
25029e03d832SJed Brown #define __FUNCT__ "User provided function"
25039e03d832SJed Brown 
2504d382aafbSBarry Smith #endif
2505