1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11d382aafbSBarry Smith in the conf/variables definition of PETSC_INCLUDE 12d382aafbSBarry Smith */ 13d382aafbSBarry Smith #include "petscconf.h" 14d382aafbSBarry Smith #include "petscfix.h" 15d382aafbSBarry Smith 1673fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1773fca5a0SBarry Smith /* 1873fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 1973fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2073fca5a0SBarry Smith */ 2173fca5a0SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) 2273fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2373fca5a0SBarry Smith #endif 2473fca5a0SBarry Smith #if defined(PETSC__BSD_SOURCE) 2573fca5a0SBarry Smith #define _BSD_SOURCE 2673fca5a0SBarry Smith #endif 2773fca5a0SBarry Smith #endif 2873fca5a0SBarry Smith 29d382aafbSBarry Smith /* ========================================================================== */ 30d382aafbSBarry Smith /* 31d382aafbSBarry Smith This facilitates using C version of PETSc from C++ and 32e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 33d382aafbSBarry Smith */ 34d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 35d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 36d382aafbSBarry Smith #endif 371ec50b02SJed Brown 381ec50b02SJed Brown #if defined(__cplusplus) 391ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 401ec50b02SJed Brown #else 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 421ec50b02SJed Brown #endif 43d382aafbSBarry Smith 44d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 45da861ed6SJed Brown #define PETSC_EXTERN extern "C" 46d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 47d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 48d382aafbSBarry Smith #else 49da861ed6SJed Brown #define PETSC_EXTERN extern 50d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 51d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 52d382aafbSBarry Smith #endif 53d382aafbSBarry Smith /* ========================================================================== */ 54d382aafbSBarry Smith /* 55d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 56d382aafbSBarry Smith Web page 57d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 58d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 59d382aafbSBarry Smith src/docs/website/index.html. 60d382aafbSBarry Smith */ 61d382aafbSBarry Smith #include "petscversion.h" 62301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 63d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 64301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 65d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 66301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 67d382aafbSBarry Smith #else 68301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 69301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 70d382aafbSBarry Smith #endif 71d382aafbSBarry Smith 72d382aafbSBarry Smith /*MC 73d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 74d382aafbSBarry Smith 75d382aafbSBarry Smith Input Parameter: 76d382aafbSBarry Smith . len - length of the string 77d382aafbSBarry Smith 78d382aafbSBarry Smith Output Parameter: 79d382aafbSBarry Smith . version - version string 80d382aafbSBarry Smith 81d382aafbSBarry Smith Level: developer 82d382aafbSBarry Smith 83d382aafbSBarry Smith Usage: 84d382aafbSBarry Smith char version[256]; 85d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 86d382aafbSBarry Smith 87d382aafbSBarry Smith Fortran Note: 88d382aafbSBarry Smith This routine is not supported in Fortran. 89d382aafbSBarry Smith 90d382aafbSBarry Smith .seealso: PetscGetProgramName() 91d382aafbSBarry Smith 92d382aafbSBarry Smith M*/ 93d382aafbSBarry Smith 94d382aafbSBarry Smith /* ========================================================================== */ 95d382aafbSBarry Smith 96d382aafbSBarry Smith /* 97d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 98d382aafbSBarry Smith 99d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 100d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 101d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 102d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 103d382aafbSBarry Smith mpicxx.h directly in their code 104d382aafbSBarry Smith */ 105d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 106d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 107d382aafbSBarry Smith #include "mpi.h" 10865013866SBarry Smith 109d382aafbSBarry Smith /* 110d382aafbSBarry Smith Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 111d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 112d382aafbSBarry Smith 113d382aafbSBarry Smith The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 114d382aafbSBarry Smith */ 115d382aafbSBarry Smith #include <stdio.h> 116d382aafbSBarry Smith 117d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 118d382aafbSBarry Smith #if !defined(MPIAPI) 119d382aafbSBarry Smith #define MPIAPI 120d382aafbSBarry Smith #endif 121d382aafbSBarry Smith 122b3506946SBarry Smith 123d382aafbSBarry Smith /*MC 124d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 125d382aafbSBarry Smith 126d382aafbSBarry Smith Level: beginner 127d382aafbSBarry Smith 128d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 129d382aafbSBarry Smith M*/ 130d382aafbSBarry Smith typedef int PetscErrorCode; 131d382aafbSBarry Smith 132d382aafbSBarry Smith /*MC 133d382aafbSBarry Smith 134503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 135d382aafbSBarry Smith (internal integer in the data structure used for error 136d382aafbSBarry Smith checking). These are all defined by an offset from the lowest 1370700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 138d382aafbSBarry Smith 139d382aafbSBarry Smith Level: advanced 140d382aafbSBarry Smith 1410700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 142d382aafbSBarry Smith M*/ 1430700a824SBarry Smith typedef int PetscClassId; 144d382aafbSBarry Smith 145d382aafbSBarry Smith 146d382aafbSBarry Smith /*MC 147d382aafbSBarry Smith PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 148d382aafbSBarry Smith 149d382aafbSBarry Smith Level: intermediate 150d382aafbSBarry Smith 151d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1523b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 153287e6e24SBarry Smith (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 1543b2a8c54SBarry Smith 1553b2a8c54SBarry Smith PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 1563b2a8c54SBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 1573b2a8c54SBarry Smith 1583b2a8c54SBarry Smith PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 1593b2a8c54SBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 160d382aafbSBarry Smith 161287e6e24SBarry Smith Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 162287e6e24SBarry Smith if you run ./configure with the option 163287e6e24SBarry Smith --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 164287e6e24SBarry Smith for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can 165287e6e24SBarry Smith purchase a 64 bit integer version of the MKL and use that with a PetscBLASInt of long int. 166287e6e24SBarry Smith 167287e6e24SBarry Smith External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 168287e6e24SBarry Smith be used with PETSc if you have set PetscBLASInt to long int. 169287e6e24SBarry Smith 170d382aafbSBarry Smith .seealso: PetscMPIInt, PetscInt 171d382aafbSBarry Smith 172d382aafbSBarry Smith M*/ 173d382aafbSBarry Smith typedef int PetscBLASInt; 174d382aafbSBarry Smith 175d382aafbSBarry Smith /*MC 176d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 177d382aafbSBarry Smith 178d382aafbSBarry Smith Level: intermediate 179d382aafbSBarry Smith 180d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1813b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 182d382aafbSBarry Smith 1833b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 184d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 185d382aafbSBarry Smith 1863b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 187d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 188d382aafbSBarry Smith 189d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 190d382aafbSBarry Smith 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscMPIInt; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 196d382aafbSBarry Smith 197d382aafbSBarry Smith Level: intermediate 198d382aafbSBarry Smith 199d382aafbSBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 200d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 201d382aafbSBarry Smith 202d382aafbSBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 203d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 204d382aafbSBarry Smith 205d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 206d382aafbSBarry Smith M*/ 207d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 208d382aafbSBarry Smith 209d382aafbSBarry Smith /*MC 210d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2113b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 212d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 217d382aafbSBarry Smith M*/ 218236ed0a3SSatish Balay #if defined(PETSC_HAVE___INT64) 219236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 220236ed0a3SSatish Balay #else 221236ed0a3SSatish Balay typedef long long Petsc64bitInt; 222236ed0a3SSatish Balay #endif 223d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 224236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 225d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 226d382aafbSBarry Smith #else 227d382aafbSBarry Smith typedef int PetscInt; 228d382aafbSBarry Smith #define MPIU_INT MPI_INT 229d382aafbSBarry Smith #endif 230236ed0a3SSatish Balay 231d382aafbSBarry Smith 23258b60935SBarry Smith /*EC 23358b60935SBarry Smith 23458b60935SBarry Smith PetscPrecision - indicates what precision the object is using 23558b60935SBarry Smith 23658b60935SBarry Smith Level: advanced 23758b60935SBarry Smith 23858b60935SBarry Smith .seealso: PetscObjectSetPrecision() 23958b60935SBarry Smith E*/ 24058b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 24158b60935SBarry Smith extern const char *PetscPrecisions[]; 24258b60935SBarry Smith 24358b60935SBarry Smith 244503cfb0cSBarry Smith /* 245503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 246503cfb0cSBarry Smith */ 247d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 248d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 249d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 250d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 251d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 252d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 253d382aafbSBarry Smith #else 254d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 255d382aafbSBarry Smith #endif 256d382aafbSBarry Smith 257d382aafbSBarry Smith 258d382aafbSBarry Smith /* 259d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 260d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 261d382aafbSBarry Smith */ 262d382aafbSBarry Smith 263d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 264d382aafbSBarry Smith 265d382aafbSBarry Smith /* 266d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 267d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 268d382aafbSBarry Smith */ 269d382aafbSBarry Smith extern FILE* PETSC_STDERR; 270d382aafbSBarry Smith 271d382aafbSBarry Smith /* 272d382aafbSBarry Smith PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 273d382aafbSBarry Smith in conjunction with PETSC_STDOUT, or by itself. 274d382aafbSBarry Smith */ 275d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD; 276d382aafbSBarry Smith 277d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 278d382aafbSBarry Smith /*MC 279d382aafbSBarry Smith PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 280d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 281d382aafbSBarry Smith 282d382aafbSBarry Smith Synopsis: 283d382aafbSBarry Smith PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 284d382aafbSBarry Smith 285eca87e8dSBarry Smith Not collective 286eca87e8dSBarry Smith 287d382aafbSBarry Smith Level: developer 288d382aafbSBarry Smith 289d382aafbSBarry Smith Example: 290d382aafbSBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 291d382aafbSBarry Smith PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 292d382aafbSBarry Smith 293d382aafbSBarry Smith .seealso: PetscPolymorphicFunction() 294d382aafbSBarry Smith 295d382aafbSBarry Smith M*/ 296d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 297d382aafbSBarry Smith 298d382aafbSBarry Smith /*MC 299d382aafbSBarry Smith PetscPolymorphicScalar - allows defining a C++ polymorphic version of 300d382aafbSBarry Smith a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 301d382aafbSBarry Smith 302d382aafbSBarry Smith Synopsis: 303d382aafbSBarry Smith PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 304d382aafbSBarry Smith 305eca87e8dSBarry Smith Not collective 306eca87e8dSBarry Smith 307d382aafbSBarry Smith Level: developer 308d382aafbSBarry Smith 309d382aafbSBarry Smith Example: 310d382aafbSBarry Smith PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 311d382aafbSBarry Smith PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 312d382aafbSBarry Smith 313d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 314d382aafbSBarry Smith 315d382aafbSBarry Smith M*/ 316d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 317d382aafbSBarry Smith 318d382aafbSBarry Smith /*MC 319d382aafbSBarry Smith PetscPolymorphicFunction - allows defining a C++ polymorphic version of 320d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 321d382aafbSBarry Smith and returns the computed value (istead of an error code) 322d382aafbSBarry Smith 323d382aafbSBarry Smith Synopsis: 324d382aafbSBarry Smith PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 325d382aafbSBarry Smith 326eca87e8dSBarry Smith Not collective 327eca87e8dSBarry Smith 328d382aafbSBarry Smith Level: developer 329d382aafbSBarry Smith 330d382aafbSBarry Smith Example: 331d382aafbSBarry Smith PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 332d382aafbSBarry Smith PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 333d382aafbSBarry Smith 334d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine() 335d382aafbSBarry Smith 336d382aafbSBarry Smith M*/ 337d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 338d382aafbSBarry Smith 339d382aafbSBarry Smith #else 340d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) 341d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) 342d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) 343d382aafbSBarry Smith #endif 344d382aafbSBarry Smith 345d382aafbSBarry Smith /*MC 346d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 347d382aafbSBarry Smith 348d382aafbSBarry Smith Synopsis: 349ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 350d382aafbSBarry Smith 351eca87e8dSBarry Smith Not Collective 352eca87e8dSBarry Smith 353d382aafbSBarry Smith Input Parameters: 354d382aafbSBarry Smith . cond - condition or expression 355d382aafbSBarry Smith 356d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 357d382aafbSBarry Smith branch is unlikely. 358d382aafbSBarry Smith 359d382aafbSBarry Smith Level: advanced 360d382aafbSBarry Smith 361d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 362d382aafbSBarry Smith M*/ 363d382aafbSBarry Smith 364d382aafbSBarry Smith /*MC 365d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 366d382aafbSBarry Smith 367d382aafbSBarry Smith Synopsis: 368ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 369d382aafbSBarry Smith 370eca87e8dSBarry Smith Not Collective 371eca87e8dSBarry Smith 372d382aafbSBarry Smith Input Parameters: 373d382aafbSBarry Smith . cond - condition or expression 374d382aafbSBarry Smith 375d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 376d382aafbSBarry Smith branch is likely. 377d382aafbSBarry Smith 378d382aafbSBarry Smith Level: advanced 379d382aafbSBarry Smith 380d382aafbSBarry Smith .seealso: PetscUnlikely() 381d382aafbSBarry Smith M*/ 382d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 383d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 384d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 385d382aafbSBarry Smith #else 386cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 387cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 388d382aafbSBarry Smith #endif 389d382aafbSBarry Smith 390d382aafbSBarry Smith /* 391d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 392d382aafbSBarry Smith */ 393d382aafbSBarry Smith #include "petscmath.h" 394d382aafbSBarry Smith 395d382aafbSBarry Smith /* 396d382aafbSBarry Smith Declare extern C stuff after including external header files 397d382aafbSBarry Smith */ 398d382aafbSBarry Smith 399d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 400d382aafbSBarry Smith 401d382aafbSBarry Smith /* 402d382aafbSBarry Smith Basic PETSc constants 403d382aafbSBarry Smith */ 404d382aafbSBarry Smith 405d382aafbSBarry Smith /*E 406ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 407d382aafbSBarry Smith 408d382aafbSBarry Smith Level: beginner 409d382aafbSBarry Smith 410ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 41134e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41234e82e7dSBarry Smith 413d382aafbSBarry Smith E*/ 414ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 415ace3abfcSBarry Smith extern const char *PetscBools[]; 41670b3c8c7SBarry Smith 41770b3c8c7SBarry Smith /*E 41870b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 41970b3c8c7SBarry Smith 42070b3c8c7SBarry Smith Level: beginner 42170b3c8c7SBarry Smith 42270b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42370b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 42470b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 42570b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 42670b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 42770b3c8c7SBarry Smith 42870b3c8c7SBarry Smith E*/ 42970b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 43070b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 431d382aafbSBarry Smith 432d382aafbSBarry Smith /*MC 433ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 434d382aafbSBarry Smith 435d382aafbSBarry Smith Level: beginner 436d382aafbSBarry Smith 437d382aafbSBarry Smith Note: Zero integer 438d382aafbSBarry Smith 439ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 440d382aafbSBarry Smith M*/ 441d382aafbSBarry Smith 442d382aafbSBarry Smith /*MC 443ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 444d382aafbSBarry Smith 445d382aafbSBarry Smith Level: beginner 446d382aafbSBarry Smith 447d382aafbSBarry Smith Note: Nonzero integer 448d382aafbSBarry Smith 449ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 450d382aafbSBarry Smith M*/ 451d382aafbSBarry Smith 452d382aafbSBarry Smith /*MC 453d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 454d382aafbSBarry Smith 455d382aafbSBarry Smith Level: beginner 456d382aafbSBarry Smith 457d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 458d382aafbSBarry Smith some default 459d382aafbSBarry Smith 460d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 461503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 462d382aafbSBarry Smith 46334e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 46434e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 46534e82e7dSBarry Smith 466d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 467d382aafbSBarry Smith 468d382aafbSBarry Smith M*/ 469d382aafbSBarry Smith #define PETSC_NULL 0 470d382aafbSBarry Smith 471d382aafbSBarry Smith /*MC 472d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 473d382aafbSBarry Smith 474d382aafbSBarry Smith Level: beginner 475d382aafbSBarry Smith 476d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 477d382aafbSBarry Smith some default 478d382aafbSBarry Smith 479d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 480d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 481d382aafbSBarry Smith 482d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 483d382aafbSBarry Smith 484d382aafbSBarry Smith M*/ 485d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 486d382aafbSBarry Smith 487d382aafbSBarry Smith /*MC 488557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 489557d4da8SBarry Smith where you wish PETSc to use the default. 490557d4da8SBarry Smith 491557d4da8SBarry Smith Level: beginner 492557d4da8SBarry Smith 493557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 494557d4da8SBarry Smith 495557d4da8SBarry Smith M*/ 496557d4da8SBarry Smith #define PETSC_DECIDE -1 497557d4da8SBarry Smith 498557d4da8SBarry Smith /*MC 499d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 500d382aafbSBarry Smith where you wish PETSc to compute the required value. 501d382aafbSBarry Smith 502d382aafbSBarry Smith Level: beginner 503d382aafbSBarry Smith 504557d4da8SBarry Smith 505557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 506557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 507557d4da8SBarry Smith 508d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 509d382aafbSBarry Smith 510d382aafbSBarry Smith M*/ 511d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 512d382aafbSBarry Smith 513d382aafbSBarry Smith /*MC 514557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 515557d4da8SBarry Smith where you wish PETSc to use the default. 516557d4da8SBarry Smith 517557d4da8SBarry Smith Level: beginner 518557d4da8SBarry Smith 519557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 520557d4da8SBarry Smith 521557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 522557d4da8SBarry Smith 523557d4da8SBarry Smith M*/ 524557d4da8SBarry Smith #define PETSC_DEFAULT -2 525557d4da8SBarry Smith 526557d4da8SBarry Smith /*MC 527d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 528d382aafbSBarry Smith all the processs that PETSc knows about. 529d382aafbSBarry Smith 530d382aafbSBarry Smith Level: beginner 531d382aafbSBarry Smith 532d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 533d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 534d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 535d382aafbSBarry Smith PetscInitialize() 536d382aafbSBarry Smith 537d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 538d382aafbSBarry Smith 539d382aafbSBarry Smith M*/ 540d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 541d382aafbSBarry Smith 542d382aafbSBarry Smith /*MC 543503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 544d382aafbSBarry Smith 545d382aafbSBarry Smith Level: beginner 546d382aafbSBarry Smith 547d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 548d382aafbSBarry Smith 549d382aafbSBarry Smith M*/ 550d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 551d382aafbSBarry Smith 5527087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 5537087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 5540fad1ec9SSatish Balay extern PetscBool synchronizeCUSP; 555d382aafbSBarry Smith 5567087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 5577087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 5587087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 559d382aafbSBarry Smith 560d382aafbSBarry Smith /*MC 561d382aafbSBarry Smith PetscMalloc - Allocates memory 562d382aafbSBarry Smith 563eca87e8dSBarry Smith Synopsis: 564eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 565eca87e8dSBarry Smith 566eca87e8dSBarry Smith Not Collective 567eca87e8dSBarry Smith 568d382aafbSBarry Smith Input Parameter: 569d382aafbSBarry Smith . m - number of bytes to allocate 570d382aafbSBarry Smith 571d382aafbSBarry Smith Output Parameter: 572d382aafbSBarry Smith . result - memory allocated 573d382aafbSBarry Smith 574d382aafbSBarry Smith Level: beginner 575d382aafbSBarry Smith 576d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 577d382aafbSBarry Smith 578d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 579d382aafbSBarry Smith properly handle not freeing the null pointer. 580d382aafbSBarry Smith 581d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 582d382aafbSBarry Smith 583d382aafbSBarry Smith Concepts: memory allocation 584d382aafbSBarry Smith 585d382aafbSBarry Smith M*/ 5862714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 587d382aafbSBarry Smith 588d382aafbSBarry Smith /*MC 589503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 590d382aafbSBarry Smith 591d382aafbSBarry Smith Synopsis: 592d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 593d382aafbSBarry Smith 594eca87e8dSBarry Smith Not Collective 595eca87e8dSBarry Smith 596eca87e8dSBarry Smith Input Parameters: 597eca87e8dSBarry Smith . addr - address to align (any pointer type) 598eca87e8dSBarry Smith 599d382aafbSBarry Smith Level: developer 600d382aafbSBarry Smith 601d382aafbSBarry Smith .seealso: PetscMallocAlign() 602d382aafbSBarry Smith 603d382aafbSBarry Smith Concepts: memory allocation 604d382aafbSBarry Smith M*/ 605d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 606d382aafbSBarry Smith 607d382aafbSBarry Smith /*MC 608503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 609d382aafbSBarry Smith 610eca87e8dSBarry Smith Synopsis: 611eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 612eca87e8dSBarry Smith 613eca87e8dSBarry Smith Not Collective 614eca87e8dSBarry Smith 615d382aafbSBarry Smith Input Parameter: 616d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 617d382aafbSBarry Smith . t1 - type of first memory elements 618d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 619d382aafbSBarry Smith - t2 - type of second memory elements 620d382aafbSBarry Smith 621d382aafbSBarry Smith Output Parameter: 622d382aafbSBarry Smith + r1 - memory allocated in first chunk 623d382aafbSBarry Smith - r2 - memory allocated in second chunk 624d382aafbSBarry Smith 625d382aafbSBarry Smith Level: developer 626d382aafbSBarry Smith 627d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 628d382aafbSBarry Smith 629d382aafbSBarry Smith Concepts: memory allocation 630d382aafbSBarry Smith 631d382aafbSBarry Smith M*/ 632d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 633d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 634d382aafbSBarry Smith #else 6353b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 636d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 637d382aafbSBarry Smith #endif 638d382aafbSBarry Smith 639d382aafbSBarry Smith /*MC 640503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 641d382aafbSBarry Smith 642eca87e8dSBarry Smith Synopsis: 643eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 644eca87e8dSBarry Smith 645eca87e8dSBarry Smith Not Collective 646eca87e8dSBarry Smith 647d382aafbSBarry Smith Input Parameter: 648d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 649d382aafbSBarry Smith . t1 - type of first memory elements 650d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 651d382aafbSBarry Smith . t2 - type of second memory elements 652d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 653d382aafbSBarry Smith - t3 - type of third memory elements 654d382aafbSBarry Smith 655d382aafbSBarry Smith Output Parameter: 656d382aafbSBarry Smith + r1 - memory allocated in first chunk 657d382aafbSBarry Smith . r2 - memory allocated in second chunk 658d382aafbSBarry Smith - r3 - memory allocated in third chunk 659d382aafbSBarry Smith 660d382aafbSBarry Smith Level: developer 661d382aafbSBarry Smith 662d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 663d382aafbSBarry Smith 664d382aafbSBarry Smith Concepts: memory allocation 665d382aafbSBarry Smith 666d382aafbSBarry Smith M*/ 667d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 668d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 669d382aafbSBarry Smith #else 6703b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 671d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 672d382aafbSBarry Smith #endif 673d382aafbSBarry Smith 674d382aafbSBarry Smith /*MC 675503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 676d382aafbSBarry Smith 677eca87e8dSBarry Smith Synopsis: 678eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 679eca87e8dSBarry Smith 680eca87e8dSBarry Smith Not Collective 681eca87e8dSBarry Smith 682d382aafbSBarry Smith Input Parameter: 683d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 684d382aafbSBarry Smith . t1 - type of first memory elements 685d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 686d382aafbSBarry Smith . t2 - type of second memory elements 687d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 688d382aafbSBarry Smith . t3 - type of third memory elements 689d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 690d382aafbSBarry Smith - t4 - type of fourth memory elements 691d382aafbSBarry Smith 692d382aafbSBarry Smith Output Parameter: 693d382aafbSBarry Smith + r1 - memory allocated in first chunk 694d382aafbSBarry Smith . r2 - memory allocated in second chunk 695d382aafbSBarry Smith . r3 - memory allocated in third chunk 696d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 697d382aafbSBarry Smith 698d382aafbSBarry Smith Level: developer 699d382aafbSBarry Smith 700d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 701d382aafbSBarry Smith 702d382aafbSBarry Smith Concepts: memory allocation 703d382aafbSBarry Smith 704d382aafbSBarry Smith M*/ 705d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 706d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 707d382aafbSBarry Smith #else 708d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 7093b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 710d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 711d382aafbSBarry Smith #endif 712d382aafbSBarry Smith 713d382aafbSBarry Smith /*MC 714503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 715d382aafbSBarry Smith 716eca87e8dSBarry Smith Synopsis: 717eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 718eca87e8dSBarry Smith 719eca87e8dSBarry Smith Not Collective 720eca87e8dSBarry Smith 721d382aafbSBarry Smith Input Parameter: 722d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 723d382aafbSBarry Smith . t1 - type of first memory elements 724d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 725d382aafbSBarry Smith . t2 - type of second memory elements 726d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 727d382aafbSBarry Smith . t3 - type of third memory elements 728d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 729d382aafbSBarry Smith . t4 - type of fourth memory elements 730d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 731d382aafbSBarry Smith - t5 - type of fifth memory elements 732d382aafbSBarry Smith 733d382aafbSBarry Smith Output Parameter: 734d382aafbSBarry Smith + r1 - memory allocated in first chunk 735d382aafbSBarry Smith . r2 - memory allocated in second chunk 736d382aafbSBarry Smith . r3 - memory allocated in third chunk 737d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 738d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 739d382aafbSBarry Smith 740d382aafbSBarry Smith Level: developer 741d382aafbSBarry Smith 742d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 743d382aafbSBarry Smith 744d382aafbSBarry Smith Concepts: memory allocation 745d382aafbSBarry Smith 746d382aafbSBarry Smith M*/ 747d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 748d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 749d382aafbSBarry Smith #else 750d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 7513b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 752d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 753d382aafbSBarry Smith #endif 754d382aafbSBarry Smith 755d382aafbSBarry Smith 756d382aafbSBarry Smith /*MC 757503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 758d382aafbSBarry Smith 759eca87e8dSBarry Smith Synopsis: 760eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 761eca87e8dSBarry Smith 762eca87e8dSBarry Smith Not Collective 763eca87e8dSBarry Smith 764d382aafbSBarry Smith Input Parameter: 765d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 766d382aafbSBarry Smith . t1 - type of first memory elements 767d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 768d382aafbSBarry Smith . t2 - type of second memory elements 769d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 770d382aafbSBarry Smith . t3 - type of third memory elements 771d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 772d382aafbSBarry Smith . t4 - type of fourth memory elements 773d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 774d382aafbSBarry Smith . t5 - type of fifth memory elements 775d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 776d382aafbSBarry Smith - t6 - type of sixth memory elements 777d382aafbSBarry Smith 778d382aafbSBarry Smith Output Parameter: 779d382aafbSBarry Smith + r1 - memory allocated in first chunk 780d382aafbSBarry Smith . r2 - memory allocated in second chunk 781d382aafbSBarry Smith . r3 - memory allocated in third chunk 782d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 783d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 784d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 785d382aafbSBarry Smith 786d382aafbSBarry Smith Level: developer 787d382aafbSBarry Smith 788d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 789d382aafbSBarry Smith 790d382aafbSBarry Smith Concepts: memory allocation 791d382aafbSBarry Smith 792d382aafbSBarry Smith M*/ 793d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 794d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 795d382aafbSBarry Smith #else 796d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7973b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 798d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 799d382aafbSBarry Smith #endif 800d382aafbSBarry Smith 801d382aafbSBarry Smith /*MC 802503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 803d382aafbSBarry Smith 804eca87e8dSBarry Smith Synopsis: 805eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 806eca87e8dSBarry Smith 807eca87e8dSBarry Smith Not Collective 808eca87e8dSBarry Smith 809d382aafbSBarry Smith Input Parameter: 810d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 811d382aafbSBarry Smith . t1 - type of first memory elements 812d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 813d382aafbSBarry Smith . t2 - type of second memory elements 814d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 815d382aafbSBarry Smith . t3 - type of third memory elements 816d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 817d382aafbSBarry Smith . t4 - type of fourth memory elements 818d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 819d382aafbSBarry Smith . t5 - type of fifth memory elements 820d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 821d382aafbSBarry Smith . t6 - type of sixth memory elements 822d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 823d382aafbSBarry Smith - t7 - type of sixth memory elements 824d382aafbSBarry Smith 825d382aafbSBarry Smith Output Parameter: 826d382aafbSBarry Smith + r1 - memory allocated in first chunk 827d382aafbSBarry Smith . r2 - memory allocated in second chunk 828d382aafbSBarry Smith . r3 - memory allocated in third chunk 829d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 830d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 831d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 832eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 833d382aafbSBarry Smith 834d382aafbSBarry Smith Level: developer 835d382aafbSBarry Smith 836d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 837d382aafbSBarry Smith 838d382aafbSBarry Smith Concepts: memory allocation 839d382aafbSBarry Smith 840d382aafbSBarry Smith M*/ 841d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 842d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 843d382aafbSBarry Smith #else 844d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 8453b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 846d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 847d382aafbSBarry Smith #endif 848d382aafbSBarry Smith 849d382aafbSBarry Smith /*MC 850503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 851d382aafbSBarry Smith 852eca87e8dSBarry Smith Synopsis: 853eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 854eca87e8dSBarry Smith 855eca87e8dSBarry Smith Not Collective 856eca87e8dSBarry Smith 857d382aafbSBarry Smith Input Parameter: 858d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 859d382aafbSBarry Smith 860d382aafbSBarry Smith Output Parameter: 861d382aafbSBarry Smith . result - memory allocated 862d382aafbSBarry Smith 863d382aafbSBarry Smith Level: beginner 864d382aafbSBarry Smith 865ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 866d382aafbSBarry Smith 867d382aafbSBarry Smith Concepts: memory allocation 868d382aafbSBarry Smith 869d382aafbSBarry Smith M*/ 870d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 871ad0619ddSBarry Smith 872ad0619ddSBarry Smith /*MC 873ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 874ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 875ad0619ddSBarry Smith 876ad0619ddSBarry Smith Synopsis: 877ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 878ad0619ddSBarry Smith 879ad0619ddSBarry Smith Not Collective 880ad0619ddSBarry Smith 881ad0619ddSBarry Smith Input Parameter: 882ad0619ddSBarry Smith + obj - object memory is logged to 883ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 884ad0619ddSBarry Smith 885ad0619ddSBarry Smith Output Parameter: 886ad0619ddSBarry Smith . result - memory allocated 887ad0619ddSBarry Smith 888ad0619ddSBarry Smith Level: developer 889ad0619ddSBarry Smith 890ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 891ad0619ddSBarry Smith 892ad0619ddSBarry Smith Concepts: memory allocation 893ad0619ddSBarry Smith 894ad0619ddSBarry Smith M*/ 895d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 896d382aafbSBarry Smith 897d382aafbSBarry Smith /*MC 898d382aafbSBarry Smith PetscFree - Frees memory 899d382aafbSBarry Smith 900eca87e8dSBarry Smith Synopsis: 901eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 902eca87e8dSBarry Smith 903eca87e8dSBarry Smith Not Collective 904eca87e8dSBarry Smith 905d382aafbSBarry Smith Input Parameter: 906d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 907d382aafbSBarry Smith 908d382aafbSBarry Smith Level: beginner 909d382aafbSBarry Smith 910d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 911d382aafbSBarry Smith 912d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 913d382aafbSBarry Smith 914d382aafbSBarry Smith Concepts: memory allocation 915d382aafbSBarry Smith 916d382aafbSBarry Smith M*/ 91712537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 918d382aafbSBarry Smith 919d382aafbSBarry Smith /*MC 920d382aafbSBarry Smith PetscFreeVoid - Frees memory 921d382aafbSBarry Smith 922d382aafbSBarry Smith Synopsis: 923d382aafbSBarry Smith void PetscFreeVoid(void *memory) 924d382aafbSBarry Smith 925eca87e8dSBarry Smith Not Collective 926eca87e8dSBarry Smith 927eca87e8dSBarry Smith Input Parameter: 928eca87e8dSBarry Smith . memory - memory to free 929eca87e8dSBarry Smith 930d382aafbSBarry Smith Level: beginner 931d382aafbSBarry Smith 932d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 933d382aafbSBarry Smith 934d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 935d382aafbSBarry Smith 936d382aafbSBarry Smith Concepts: memory allocation 937d382aafbSBarry Smith 938d382aafbSBarry Smith M*/ 9392714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 940d382aafbSBarry Smith 941d382aafbSBarry Smith 942d382aafbSBarry Smith /*MC 943d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 944d382aafbSBarry Smith 945eca87e8dSBarry Smith Synopsis: 946eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 947eca87e8dSBarry Smith 948eca87e8dSBarry Smith Not Collective 949eca87e8dSBarry Smith 950d382aafbSBarry Smith Input Parameter: 951d382aafbSBarry Smith + memory1 - memory to free 952d382aafbSBarry Smith - memory2 - 2nd memory to free 953d382aafbSBarry Smith 954d382aafbSBarry Smith Level: developer 955d382aafbSBarry Smith 956d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 957d382aafbSBarry Smith 958d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 959d382aafbSBarry Smith 960d382aafbSBarry Smith Concepts: memory allocation 961d382aafbSBarry Smith 962d382aafbSBarry Smith M*/ 963d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 964d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 965d382aafbSBarry Smith #else 96681dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 967d382aafbSBarry Smith #endif 968d382aafbSBarry Smith 969d382aafbSBarry Smith /*MC 970d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 971d382aafbSBarry Smith 972eca87e8dSBarry Smith Synopsis: 973eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 974eca87e8dSBarry Smith 975eca87e8dSBarry Smith Not Collective 976eca87e8dSBarry Smith 977d382aafbSBarry Smith Input Parameter: 978d382aafbSBarry Smith + memory1 - memory to free 979d382aafbSBarry Smith . memory2 - 2nd memory to free 980d382aafbSBarry Smith - memory3 - 3rd memory to free 981d382aafbSBarry Smith 982d382aafbSBarry Smith Level: developer 983d382aafbSBarry Smith 984d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 985d382aafbSBarry Smith 986d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 987d382aafbSBarry Smith 988d382aafbSBarry Smith Concepts: memory allocation 989d382aafbSBarry Smith 990d382aafbSBarry Smith M*/ 991d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 992d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 993d382aafbSBarry Smith #else 99481dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 995d382aafbSBarry Smith #endif 996d382aafbSBarry Smith 997d382aafbSBarry Smith /*MC 998d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 999d382aafbSBarry Smith 1000eca87e8dSBarry Smith Synopsis: 1001eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1002eca87e8dSBarry Smith 1003eca87e8dSBarry Smith Not Collective 1004eca87e8dSBarry Smith 1005d382aafbSBarry Smith Input Parameter: 1006d382aafbSBarry Smith + m1 - memory to free 1007d382aafbSBarry Smith . m2 - 2nd memory to free 1008d382aafbSBarry Smith . m3 - 3rd memory to free 1009d382aafbSBarry Smith - m4 - 4th memory to free 1010d382aafbSBarry Smith 1011d382aafbSBarry Smith Level: developer 1012d382aafbSBarry Smith 1013d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1014d382aafbSBarry Smith 1015d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1016d382aafbSBarry Smith 1017d382aafbSBarry Smith Concepts: memory allocation 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith M*/ 1020d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1021d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1022d382aafbSBarry Smith #else 102381dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1024d382aafbSBarry Smith #endif 1025d382aafbSBarry Smith 1026d382aafbSBarry Smith /*MC 1027d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1028d382aafbSBarry Smith 1029eca87e8dSBarry Smith Synopsis: 1030eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1031eca87e8dSBarry Smith 1032eca87e8dSBarry Smith Not Collective 1033eca87e8dSBarry Smith 1034d382aafbSBarry Smith Input Parameter: 1035d382aafbSBarry Smith + m1 - memory to free 1036d382aafbSBarry Smith . m2 - 2nd memory to free 1037d382aafbSBarry Smith . m3 - 3rd memory to free 1038d382aafbSBarry Smith . m4 - 4th memory to free 1039d382aafbSBarry Smith - m5 - 5th memory to free 1040d382aafbSBarry Smith 1041d382aafbSBarry Smith Level: developer 1042d382aafbSBarry Smith 1043d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1044d382aafbSBarry Smith 1045d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1046d382aafbSBarry Smith 1047d382aafbSBarry Smith Concepts: memory allocation 1048d382aafbSBarry Smith 1049d382aafbSBarry Smith M*/ 1050d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1051d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1052d382aafbSBarry Smith #else 105381dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1054d382aafbSBarry Smith #endif 1055d382aafbSBarry Smith 1056d382aafbSBarry Smith 1057d382aafbSBarry Smith /*MC 1058d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1059d382aafbSBarry Smith 1060eca87e8dSBarry Smith Synopsis: 1061eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1062eca87e8dSBarry Smith 1063eca87e8dSBarry Smith Not Collective 1064eca87e8dSBarry Smith 1065d382aafbSBarry Smith Input Parameter: 1066d382aafbSBarry Smith + m1 - memory to free 1067d382aafbSBarry Smith . m2 - 2nd memory to free 1068d382aafbSBarry Smith . m3 - 3rd memory to free 1069d382aafbSBarry Smith . m4 - 4th memory to free 1070d382aafbSBarry Smith . m5 - 5th memory to free 1071d382aafbSBarry Smith - m6 - 6th memory to free 1072d382aafbSBarry Smith 1073d382aafbSBarry Smith 1074d382aafbSBarry Smith Level: developer 1075d382aafbSBarry Smith 1076d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1077d382aafbSBarry Smith 1078d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1079d382aafbSBarry Smith 1080d382aafbSBarry Smith Concepts: memory allocation 1081d382aafbSBarry Smith 1082d382aafbSBarry Smith M*/ 1083d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1084d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1085d382aafbSBarry Smith #else 108681dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1087d382aafbSBarry Smith #endif 1088d382aafbSBarry Smith 1089d382aafbSBarry Smith /*MC 1090d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1091d382aafbSBarry Smith 1092eca87e8dSBarry Smith Synopsis: 1093eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1094eca87e8dSBarry Smith 1095eca87e8dSBarry Smith Not Collective 1096eca87e8dSBarry Smith 1097d382aafbSBarry Smith Input Parameter: 1098d382aafbSBarry Smith + m1 - memory to free 1099d382aafbSBarry Smith . m2 - 2nd memory to free 1100d382aafbSBarry Smith . m3 - 3rd memory to free 1101d382aafbSBarry Smith . m4 - 4th memory to free 1102d382aafbSBarry Smith . m5 - 5th memory to free 1103d382aafbSBarry Smith . m6 - 6th memory to free 1104d382aafbSBarry Smith - m7 - 7th memory to free 1105d382aafbSBarry Smith 1106d382aafbSBarry Smith 1107d382aafbSBarry Smith Level: developer 1108d382aafbSBarry Smith 1109d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1110d382aafbSBarry Smith 1111d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1112d382aafbSBarry Smith PetscMalloc7() 1113d382aafbSBarry Smith 1114d382aafbSBarry Smith Concepts: memory allocation 1115d382aafbSBarry Smith 1116d382aafbSBarry Smith M*/ 1117d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1118d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1119d382aafbSBarry Smith #else 112081dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1121d382aafbSBarry Smith #endif 1122d382aafbSBarry Smith 11237087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 11247087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 11257087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 11267087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith /* 112966d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1130d382aafbSBarry Smith */ 11317087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 11327087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 11337087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 11347087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 11357087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 11367087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 11377087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 113818a2528dSJed Brown extern PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1139d382aafbSBarry Smith 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith /*E 1142d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1143d382aafbSBarry Smith 1144d382aafbSBarry Smith Level: beginner 1145d382aafbSBarry Smith 1146d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1147d382aafbSBarry Smith 1148d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1149d382aafbSBarry Smith PetscDataTypeGetSize() 1150d382aafbSBarry Smith 1151d382aafbSBarry Smith E*/ 1152d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 115359a34000SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType; 1154d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1157d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1158d382aafbSBarry Smith #else 1159ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1160d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 116159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 116259a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1163d382aafbSBarry Smith #else 1164d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1165d382aafbSBarry Smith #endif 1166d382aafbSBarry Smith #endif 1167ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1168d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 116959a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 117059a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1171d382aafbSBarry Smith #else 1172d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1173d382aafbSBarry Smith #endif 1174d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1175d382aafbSBarry Smith 11767087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11777087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11787087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith /* 1181d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1182d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1183d382aafbSBarry Smith functionality and/or error checking. 1184d382aafbSBarry Smith */ 11857087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11867087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11877087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11887087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11897087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11907087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11917087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11927087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11937087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 11947087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 11957087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 11967087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 11977087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 11987087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 11997087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 12007087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 12017087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 12027087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 12037087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 120474722a09SBarry Smith extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 12057ba3a57cSBarry Smith extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 12067087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 12077087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith /*S 1210d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith Level: intermediate 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1215d382aafbSBarry Smith S*/ 1216d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1217d382aafbSBarry Smith 12187087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 12197087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 12208c74ee41SBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken*); 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith /* 1223d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1224d382aafbSBarry Smith */ 12257087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 1226ce63c4c1SBarry Smith #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 12277087cfbeSBarry Smith extern MPI_Op MPIU_SUM; 1228d382aafbSBarry Smith #else 1229d382aafbSBarry Smith #define MPIU_SUM MPI_SUM 1230d382aafbSBarry Smith #endif 1231ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 1232d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1233d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1234d9822059SBarry Smith #else 1235d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1236d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1237d9822059SBarry Smith #endif 12387087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1239d382aafbSBarry Smith 1240eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1241eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1242eb3f98d2SBarry Smith 1243d382aafbSBarry Smith /*S 1244d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1245d382aafbSBarry Smith 1246d382aafbSBarry Smith Level: beginner 1247d382aafbSBarry Smith 1248d382aafbSBarry Smith Note: This is the base class from which all objects appear. 1249d382aafbSBarry Smith 12501890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1251d382aafbSBarry Smith S*/ 1252d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith /*S 1255d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1256d382aafbSBarry Smith by string name 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith Level: advanced 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy() 1261d382aafbSBarry Smith S*/ 1262d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1263d382aafbSBarry Smith 1264e4d1774bSDmitry Karpeev /*S 1265e4d1774bSDmitry Karpeev PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries, 1266e4d1774bSDmitry Karpeev accessed by string op name together with string argument types. 1267e4d1774bSDmitry Karpeev 1268e4d1774bSDmitry Karpeev Level: advanced 1269e4d1774bSDmitry Karpeev 1270e4d1774bSDmitry Karpeev .seealso: PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy() 1271e4d1774bSDmitry Karpeev S*/ 1272e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList; 1273e4d1774bSDmitry Karpeev 1274d382aafbSBarry Smith /*E 1275d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1276d382aafbSBarry Smith 1277d382aafbSBarry Smith Level: beginner 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1290d382aafbSBarry Smith E*/ 1291d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith #include "petscviewer.h" 1294d382aafbSBarry Smith #include "petscoptions.h" 1295d382aafbSBarry Smith 12960700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 12977087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 12987087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 12997087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1300d382aafbSBarry Smith 1301d382aafbSBarry Smith /* 1302d382aafbSBarry Smith Routines that get memory usage information from the OS 1303d382aafbSBarry Smith */ 13047087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 13057087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 13067087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 13077087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1308d382aafbSBarry Smith 13097087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 13107087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 13117087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 13127087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1313d382aafbSBarry Smith 1314d382aafbSBarry Smith /* 1315d382aafbSBarry Smith Initialization of PETSc 1316d382aafbSBarry Smith */ 13177087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1318d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 13197087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 13207087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 13217087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 13227087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 132309573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 13247087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 13257087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 13267087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1327d382aafbSBarry Smith 13287087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 13297087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1330d382aafbSBarry Smith 1331d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 133285afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 133385afcc9aSBarry Smith extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 133485afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFinalize(void); 133585afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 133685afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 133785afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 133885afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1339d382aafbSBarry Smith 13407087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 13417087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 13427087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 13435180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith /* 1346d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 1347d382aafbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be 1348d382aafbSBarry Smith C++. 1349d382aafbSBarry Smith */ 1350d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1351d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1352d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1353d382aafbSBarry Smith 1354d382aafbSBarry Smith /* 1355d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1356d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1357503cfb0cSBarry Smith 1358503cfb0cSBarry Smith Level: developer 1359503cfb0cSBarry Smith 1360503cfb0cSBarry Smith .seealso: PetscUseMethod() 1361d382aafbSBarry Smith */ 1362d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1363d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1364d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1365d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1366d382aafbSBarry Smith } 1367503cfb0cSBarry Smith 1368503cfb0cSBarry Smith /* 1369503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1370503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1371503cfb0cSBarry Smith 1372503cfb0cSBarry Smith Level: developer 1373503cfb0cSBarry Smith 1374503cfb0cSBarry Smith .seealso: PetscTryMethod() 1375503cfb0cSBarry Smith */ 1376d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1377d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1378d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1379d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1380703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1381d382aafbSBarry Smith } 1382503cfb0cSBarry Smith 1383d382aafbSBarry Smith /* 1384d382aafbSBarry Smith Functions that can act on any PETSc object. 1385d382aafbSBarry Smith */ 1386fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13877087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13887087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1389609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13907087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13917087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13927087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13937087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 13947087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 13957087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 13967087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 13977087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 13987087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 13997087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 14007087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 14017087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 14027087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 14037087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 14047087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 14056ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 14067087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 14077087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 14087087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 14097087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 14107087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 14117087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 14127087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 14137087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1414d382aafbSBarry Smith 1415d382aafbSBarry Smith /*MC 1416d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1417d382aafbSBarry Smith 1418eca87e8dSBarry Smith Synopsis: 1419eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1420eca87e8dSBarry Smith 1421ad4df100SBarry Smith Logically Collective on PetscObject 1422d382aafbSBarry Smith 1423d382aafbSBarry Smith Input Parameters: 1424d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1425d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1426d382aafbSBarry Smith . name - name associated with the child function 1427d382aafbSBarry Smith . fname - name of the function 1428d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1429d382aafbSBarry Smith 1430d382aafbSBarry Smith Level: advanced 1431d382aafbSBarry Smith 1432d382aafbSBarry Smith 1433d382aafbSBarry Smith Notes: 1434d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1435d382aafbSBarry Smith 1436d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1437d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1438d382aafbSBarry Smith 1439d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 144020de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1441d382aafbSBarry Smith enabled. 1442d382aafbSBarry Smith 1443d382aafbSBarry Smith Concepts: objects^composing functions 1444d382aafbSBarry Smith Concepts: composing functions 1445d382aafbSBarry Smith Concepts: functions^querying 1446d382aafbSBarry Smith Concepts: objects^querying 1447d382aafbSBarry Smith Concepts: querying objects 1448d382aafbSBarry Smith 1449d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1450d382aafbSBarry Smith M*/ 1451d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1452d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1453d382aafbSBarry Smith #else 1454d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1455d382aafbSBarry Smith #endif 1456d382aafbSBarry Smith 14577087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 14587087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 14597087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 14607087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 14617087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 14627087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 14637087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 14647087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 14657087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 14667087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 14677087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 14687087cfbeSBarry Smith extern PetscErrorCode PetscTypeCompare(PetscObject,const char[],PetscBool *); 14692b12f010SJed Brown extern PetscErrorCode PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14707087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14717087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1472d382aafbSBarry Smith 1473d382aafbSBarry Smith /* 1474d382aafbSBarry Smith Defines PETSc error handling. 1475d382aafbSBarry Smith */ 1476d382aafbSBarry Smith #include "petscerror.h" 1477d382aafbSBarry Smith 1478d382aafbSBarry Smith /*S 1479503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1480d382aafbSBarry Smith 14811d0fab5eSBarry Smith Level: developer 1482d382aafbSBarry Smith 14831d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14841d0fab5eSBarry Smith 14851d0fab5eSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1486d382aafbSBarry Smith S*/ 1487d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1488d382aafbSBarry Smith 1489fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14907087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1491bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14927087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14936ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 14947087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1495d382aafbSBarry Smith 1496d382aafbSBarry Smith /* 1497503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1498d382aafbSBarry Smith link libraries that will be loaded as needed. 1499d382aafbSBarry Smith */ 15007087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 15017087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 15024b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 15037087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1504d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1505d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1506d382aafbSBarry Smith #else 1507d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1508d382aafbSBarry Smith #endif 15097087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 15107087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 15117087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 15127087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1513d382aafbSBarry Smith 151448703020SDmitry Karpeev /* 151548703020SDmitry Karpeev Multiple dispatch operation function lists. Lists of names of routines with corresponding 151648703020SDmitry Karpeev argument type names with function pointers or in dynamic link libraries that will be loaded 151748703020SDmitry Karpeev as needed. Search on the op name and argument type names. 151848703020SDmitry Karpeev */ 1519*2356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]); 152048703020SDmitry Karpeev extern PetscErrorCode PetscOpFListDestroy(PetscOpFList*); 1521*2356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]); 152248703020SDmitry Karpeev extern PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer); 1523d382aafbSBarry Smith /*S 1524d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1525d382aafbSBarry Smith 1526d382aafbSBarry Smith Level: advanced 1527d382aafbSBarry Smith 152820de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1529d382aafbSBarry Smith 1530d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1531d382aafbSBarry Smith S*/ 1532d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 15337087cfbeSBarry Smith extern PetscDLLibrary DLLibrariesLoaded; 15347087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 15357087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 15367087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 15377087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 15387087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 15397087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 15407087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 15417087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1542d382aafbSBarry Smith 1543d382aafbSBarry Smith /* 1544a5a3d712SDmitry Karpeev PetscShell support. Needs to be better documented. 154505846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 154605846914SDmitry Karpeev */ 1547a5a3d712SDmitry Karpeev #include "petscshell.h" 154805846914SDmitry Karpeev 154905846914SDmitry Karpeev /* 1550d382aafbSBarry Smith Useful utility routines 1551d382aafbSBarry Smith */ 15527087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 15537087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 15547087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1555d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1556d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 15577087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1558d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1559d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 15607087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 15617087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1562d382aafbSBarry Smith 1563503cfb0cSBarry Smith /* 1564ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1565503cfb0cSBarry Smith 1566503cfb0cSBarry Smith Notes: This is useful in cases like 1567503cfb0cSBarry Smith $ int *a; 1568ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1569ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1570503cfb0cSBarry Smith */ 1571d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1572503cfb0cSBarry Smith 1573d382aafbSBarry Smith /* 1574d382aafbSBarry Smith Defines basic graphics available from PETSc. 1575d382aafbSBarry Smith */ 1576d382aafbSBarry Smith #include "petscdraw.h" 1577d382aafbSBarry Smith 1578d382aafbSBarry Smith /* 1579d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1580d382aafbSBarry Smith */ 1581d382aafbSBarry Smith #include "private/petscimpl.h" 1582503cfb0cSBarry Smith 1583238ccf28SShri Abhyankar 1584d382aafbSBarry Smith /*MC 1585d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1586d382aafbSBarry Smith 1587d382aafbSBarry Smith Synopsis: 1588d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1589d382aafbSBarry Smith 1590eca87e8dSBarry Smith Not Collective 1591eca87e8dSBarry Smith 1592d382aafbSBarry Smith Input Parameters: 1593d382aafbSBarry Smith . format - the usual printf() format string 1594d382aafbSBarry Smith 1595d382aafbSBarry Smith Options Database Keys: 1596d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1597d382aafbSBarry Smith (default) stderr 1598d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1599d382aafbSBarry Smith error is handled.) 1600d382aafbSBarry Smith 1601d382aafbSBarry Smith Notes: Use 1602d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1603d382aafbSBarry Smith $ error is handled.) and 1604d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1605c9a19010SBarry Smith $ of you can use your own function 1606d382aafbSBarry Smith 1607d382aafbSBarry Smith Use 1608d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1609d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1610d382aafbSBarry Smith 1611d382aafbSBarry Smith Use 1612d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1613d382aafbSBarry Smith 1614d382aafbSBarry Smith Level: developer 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith Fortran Note: 1617d382aafbSBarry Smith This routine is not supported in Fortran. 1618d382aafbSBarry Smith 1619d382aafbSBarry Smith Concepts: error messages^printing 1620d382aafbSBarry Smith Concepts: printing^error messages 1621d382aafbSBarry Smith 1622c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1623d382aafbSBarry Smith M*/ 16247087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1625d382aafbSBarry Smith 1626d382aafbSBarry Smith /*MC 1627d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1628d382aafbSBarry Smith 1629d382aafbSBarry Smith Synopsis: 1630d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1631d382aafbSBarry Smith 1632eca87e8dSBarry Smith Not Collective 1633eca87e8dSBarry Smith 1634d382aafbSBarry Smith Input Parameters: 1635d382aafbSBarry Smith . format - the usual printf() format string 1636d382aafbSBarry Smith 1637d382aafbSBarry Smith Level: developer 1638d382aafbSBarry Smith 1639d382aafbSBarry Smith Fortran Note: 1640d382aafbSBarry Smith This routine is not supported in Fortran. 1641d382aafbSBarry Smith 1642d382aafbSBarry Smith Concepts: help messages^printing 1643d382aafbSBarry Smith Concepts: printing^help messages 1644d382aafbSBarry Smith 1645d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1646d382aafbSBarry Smith M*/ 16477087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1648d382aafbSBarry Smith 1649fcfd50ebSBarry Smith /* 1650fcfd50ebSBarry Smith Defines PETSc profiling. 1651fcfd50ebSBarry Smith */ 1652fcfd50ebSBarry Smith #include "petsclog.h" 1653fcfd50ebSBarry Smith 1654fcfd50ebSBarry Smith /* 1655fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1656fcfd50ebSBarry Smith */ 1657fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1658fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1659fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1660fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1661fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1662fcfd50ebSBarry Smith #else 1663fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1664fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1665fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1666fcfd50ebSBarry Smith #endif 1667fcfd50ebSBarry Smith 1668fcfd50ebSBarry Smith /* 1669fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1670fcfd50ebSBarry Smith */ 1671fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1672fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1673fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1674fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1675fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1676fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1677257d2499SJed Brown extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1678fcfd50ebSBarry Smith 1679fcfd50ebSBarry Smith 1680fcfd50ebSBarry Smith 1681fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1682fcfd50ebSBarry Smith #include <stdarg.h> 1683fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1684fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1685fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1686fcfd50ebSBarry Smith 1687fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1688fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1689fcfd50ebSBarry Smith #endif 1690fcfd50ebSBarry Smith 169109573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 169209573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 169309573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1694d382aafbSBarry Smith 1695d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16967087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16977087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1698d382aafbSBarry Smith #endif 1699d382aafbSBarry Smith 17007087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 17017087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 17027087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 17037087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 17047087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 17057087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 17067087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1707d382aafbSBarry Smith 17087087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1709d382aafbSBarry Smith 1710d382aafbSBarry Smith /*S 1711d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1712d382aafbSBarry Smith 1713d382aafbSBarry Smith Level: advanced 1714d382aafbSBarry Smith 1715d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1716d382aafbSBarry Smith S*/ 17177087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1718d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 17197087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 17207087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1721fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 17227087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 17237087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1724d382aafbSBarry Smith 1725d382aafbSBarry Smith /* 1726d382aafbSBarry Smith For use in debuggers 1727d382aafbSBarry Smith */ 17287087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 17297087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 17307087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 17317087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 17327087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1733d382aafbSBarry Smith 1734d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1735d382aafbSBarry Smith #include <memory.h> 1736d382aafbSBarry Smith #endif 1737d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1738d382aafbSBarry Smith #include <stdlib.h> 1739d382aafbSBarry Smith #endif 1740d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1741d382aafbSBarry Smith #include <strings.h> 1742d382aafbSBarry Smith #endif 1743d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1744d382aafbSBarry Smith #include <string.h> 1745d382aafbSBarry Smith #endif 17466c7e564aSBarry Smith 17476c7e564aSBarry Smith 1748d382aafbSBarry Smith #if defined(PETSC_HAVE_XMMINTRIN_H) 1749d382aafbSBarry Smith #include <xmmintrin.h> 1750d382aafbSBarry Smith #endif 1751d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1752d382aafbSBarry Smith #include <stdint.h> 1753d382aafbSBarry Smith #endif 1754d382aafbSBarry Smith 1755fcfd50ebSBarry Smith #undef __FUNCT__ 1756fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1757d382aafbSBarry Smith /*@C 1758d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1759d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1760d382aafbSBarry Smith PetscMemmove() in that case. 1761d382aafbSBarry Smith 1762d382aafbSBarry Smith Not Collective 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith Input Parameters: 1765d382aafbSBarry Smith + b - pointer to initial memory space 1766d382aafbSBarry Smith - n - length (in bytes) of space to copy 1767d382aafbSBarry Smith 1768d382aafbSBarry Smith Output Parameter: 1769d382aafbSBarry Smith . a - pointer to copy space 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith Level: intermediate 1772d382aafbSBarry Smith 1773d382aafbSBarry Smith Compile Option: 1774d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1775d382aafbSBarry Smith for memory copies on double precision values. 1776d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1777d382aafbSBarry Smith for memory copies on double precision values. 1778d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1779d382aafbSBarry Smith for memory copies on double precision values. 1780d382aafbSBarry Smith 1781d382aafbSBarry Smith Note: 1782d382aafbSBarry Smith This routine is analogous to memcpy(). 1783d382aafbSBarry Smith 1784503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1785503cfb0cSBarry Smith 1786d382aafbSBarry Smith Concepts: memory^copying 1787d382aafbSBarry Smith Concepts: copying^memory 1788d382aafbSBarry Smith 1789d382aafbSBarry Smith .seealso: PetscMemmove() 1790d382aafbSBarry Smith 1791d382aafbSBarry Smith @*/ 17927087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1793d382aafbSBarry Smith { 1794d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1795d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1796d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1797a7e36092SMatthew G Knepley PetscFunctionBegin; 1798e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1799e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1800a7e36092SMatthew G Knepley #else 1801d382aafbSBarry Smith PetscFunctionBegin; 1802a7e36092SMatthew G Knepley #endif 1803d382aafbSBarry Smith if (a != b) { 1804d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1805d382aafbSBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) { 1806e32f2f54SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1807d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1808d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1809d382aafbSBarry Smith } 1810d382aafbSBarry Smith #endif 1811d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1812d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1813d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1814d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1815d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1816d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1817d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1818d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1819d382aafbSBarry Smith #else 1820d382aafbSBarry Smith size_t i; 1821d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1822d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1823d382aafbSBarry Smith #endif 1824d382aafbSBarry Smith } else { 1825d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1826d382aafbSBarry Smith } 1827d382aafbSBarry Smith #else 1828d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1829d382aafbSBarry Smith #endif 1830d382aafbSBarry Smith } 1831d382aafbSBarry Smith PetscFunctionReturn(0); 1832d382aafbSBarry Smith } 1833d382aafbSBarry Smith 1834d382aafbSBarry Smith /*@C 1835d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1836d382aafbSBarry Smith 1837d382aafbSBarry Smith Not Collective 1838d382aafbSBarry Smith 1839d382aafbSBarry Smith Input Parameters: 1840d382aafbSBarry Smith + a - pointer to beginning memory location 1841d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1842d382aafbSBarry Smith 1843d382aafbSBarry Smith Level: intermediate 1844d382aafbSBarry Smith 1845d382aafbSBarry Smith Compile Option: 1846d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1847d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1848d382aafbSBarry Smith 1849503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1850503cfb0cSBarry Smith 1851d382aafbSBarry Smith Concepts: memory^zeroing 1852d382aafbSBarry Smith Concepts: zeroing^memory 1853d382aafbSBarry Smith 1854d382aafbSBarry Smith .seealso: PetscMemcpy() 1855d382aafbSBarry Smith @*/ 18567087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1857d382aafbSBarry Smith { 1858d382aafbSBarry Smith if (n > 0) { 1859d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1860e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1861d382aafbSBarry Smith #endif 1862d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1863d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1864d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1865d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1866d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1867d382aafbSBarry Smith } else { 1868d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1869d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1870d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1871d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1872d382aafbSBarry Smith } else { 1873d382aafbSBarry Smith #endif 1874d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1875d382aafbSBarry Smith bzero((char *)a,n); 1876d382aafbSBarry Smith #else 1877d382aafbSBarry Smith memset((char*)a,0,n); 1878d382aafbSBarry Smith #endif 1879d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1880d382aafbSBarry Smith } 1881d382aafbSBarry Smith #endif 1882d382aafbSBarry Smith } 1883d382aafbSBarry Smith return 0; 1884d382aafbSBarry Smith } 1885d382aafbSBarry Smith 1886d382aafbSBarry Smith /*MC 1887d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1888d382aafbSBarry Smith 1889eca87e8dSBarry Smith Synopsis: 1890eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1891eca87e8dSBarry Smith 1892d382aafbSBarry Smith Not Collective 1893d382aafbSBarry Smith 1894d382aafbSBarry Smith Input Parameters: 1895d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1896d382aafbSBarry Smith . n - number of elements to fetch 1897d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 189850d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1899d382aafbSBarry Smith 1900d382aafbSBarry Smith Level: developer 1901d382aafbSBarry Smith 1902d382aafbSBarry Smith Notes: 1903d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1904d382aafbSBarry Smith 190550d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 190650d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 190750d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 190863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 190963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 191063cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1913d382aafbSBarry Smith address). 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith Concepts: memory 1916d382aafbSBarry Smith M*/ 1917d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1918d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1919d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1920d382aafbSBarry Smith } while (0) 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith /* 1923e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1924d382aafbSBarry Smith */ 1925d382aafbSBarry Smith #include "petscmatlab.h" 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith /* 1928d382aafbSBarry Smith Determine if some of the kernel computation routines use 1929d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1930d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1931d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1932e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1933d382aafbSBarry Smith */ 1934d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1935d382aafbSBarry Smith 1936d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1937d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1938d382aafbSBarry Smith #endif 1939d382aafbSBarry Smith 19405a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 19415a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1942d382aafbSBarry Smith #endif 1943d382aafbSBarry Smith 1944d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1945d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1946d382aafbSBarry Smith #endif 1947d382aafbSBarry Smith 1948d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1949d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1950d382aafbSBarry Smith #endif 1951d382aafbSBarry Smith 1952d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1953d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1954d382aafbSBarry Smith #endif 1955d382aafbSBarry Smith 1956d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1957d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1958d382aafbSBarry Smith #endif 1959d382aafbSBarry Smith 1960d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1961d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1962d382aafbSBarry Smith #endif 1963d382aafbSBarry Smith 1964d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1965d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1966d382aafbSBarry Smith #endif 1967d382aafbSBarry Smith 1968d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1969d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1970d382aafbSBarry Smith #endif 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1973d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1974d382aafbSBarry Smith #endif 1975d382aafbSBarry Smith 1976d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1977d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1978d382aafbSBarry Smith #endif 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1981d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1982d382aafbSBarry Smith #endif 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1985d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1986d382aafbSBarry Smith #endif 1987d382aafbSBarry Smith 1988d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1989d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1990d382aafbSBarry Smith #endif 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith #endif 1993d382aafbSBarry Smith 1994d382aafbSBarry Smith /* 1995d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1996d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1997d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1998d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1999d382aafbSBarry Smith ugly extern "C" {} wrappers. 2000d382aafbSBarry Smith */ 2001d382aafbSBarry Smith #if defined(__cplusplus) 2002da861ed6SJed Brown #define PETSC_EXTERN_C extern "C" 2003d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2004d382aafbSBarry Smith #define EXTERN_C_END } 2005d382aafbSBarry Smith #else 2006da861ed6SJed Brown #define PETSC_EXTERN_C 2007d382aafbSBarry Smith #define EXTERN_C_BEGIN 2008d382aafbSBarry Smith #define EXTERN_C_END 2009d382aafbSBarry Smith #endif 2010d382aafbSBarry Smith 2011d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith /*MC 2014d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2015d382aafbSBarry Smith communication 2016d382aafbSBarry Smith 2017d382aafbSBarry Smith Level: beginner 2018d382aafbSBarry Smith 2019d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2020d382aafbSBarry Smith 2021d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2022d382aafbSBarry Smith M*/ 2023d382aafbSBarry Smith 2024d382aafbSBarry Smith /*MC 2025d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2026d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2027d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2028d382aafbSBarry Smith 2029d382aafbSBarry Smith 2030d382aafbSBarry Smith Level: beginner 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2033d382aafbSBarry Smith M*/ 2034d382aafbSBarry Smith 2035d382aafbSBarry Smith /*MC 2036d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith Level: beginner 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2041d382aafbSBarry Smith M*/ 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith /*MC 2044d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2045d382aafbSBarry Smith Level: beginner 2046d382aafbSBarry Smith 2047d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2048d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2051d382aafbSBarry Smith M*/ 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith /*MC 2054d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith Level: beginner 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2059d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2060d382aafbSBarry Smith 2061d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2062d382aafbSBarry Smith M*/ 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith /*MC 2065d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2066d382aafbSBarry Smith 2067d382aafbSBarry Smith Level: beginner 2068d382aafbSBarry Smith 2069d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2070d382aafbSBarry Smith pass this value 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2073d382aafbSBarry Smith M*/ 2074d382aafbSBarry Smith 2075d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2076d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2077d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2078d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2079d382aafbSBarry Smith #else 2080d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2081d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2082d382aafbSBarry Smith #endif 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2086d382aafbSBarry Smith 2087d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2088d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2089d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2090d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2091d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2092d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2093d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2094d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2095d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2098e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2099e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2100eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2101eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2102d382aafbSBarry Smith 2103d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2104e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2105eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2106d382aafbSBarry Smith #else 2107d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2108d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2109d382aafbSBarry Smith #endif 2110d382aafbSBarry Smith 2111d382aafbSBarry Smith #else 2112d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2113d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2114d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2115d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2116d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2117d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2118d382aafbSBarry Smith #endif 2119d382aafbSBarry Smith 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith /* 2122d382aafbSBarry Smith The IBM include files define hz, here we hide it so that it may be used 2123d382aafbSBarry Smith as a regular user variable. 2124d382aafbSBarry Smith */ 2125d382aafbSBarry Smith #if defined(hz) 2126d382aafbSBarry Smith #undef hz 2127d382aafbSBarry Smith #endif 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith 2132d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2133d382aafbSBarry Smith #include <limits.h> 2134d382aafbSBarry Smith #endif 2135d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2136d382aafbSBarry Smith #include <sys/param.h> 2137d382aafbSBarry Smith #endif 2138d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2139d382aafbSBarry Smith #include <sys/types.h> 2140d382aafbSBarry Smith #endif 2141d382aafbSBarry Smith #if defined(MAXPATHLEN) 2142d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2143d382aafbSBarry Smith #elif defined(MAX_PATH) 2144d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2145d382aafbSBarry Smith #elif defined(_MAX_PATH) 2146d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2147d382aafbSBarry Smith #else 2148d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2149d382aafbSBarry Smith #endif 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith /* Special support for C++ */ 2152d382aafbSBarry Smith #include "petscsys.hh" 21536c7e564aSBarry Smith 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith /*MC 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2158d382aafbSBarry Smith 2159d382aafbSBarry Smith $ 1) classic Fortran 77 style 2160d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2161d382aafbSBarry Smith $ XXX variablename 2162d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2163d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2164d382aafbSBarry Smith $ 2165d382aafbSBarry Smith $ 2) classic Fortran 90 style 2166d1716517SSatish Balay $#include "finclude/petscXXX.h" 2167d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2168d382aafbSBarry Smith $ XXX variablename 2169d382aafbSBarry Smith $ 2170d382aafbSBarry Smith $ 3) Using Fortran modules 2171d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2172d382aafbSBarry Smith $ use petscXXXX 2173d382aafbSBarry Smith $ XXX variablename 2174d382aafbSBarry Smith $ 2175d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2176d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2177d382aafbSBarry Smith $ use petscXXXX 2178d382aafbSBarry Smith $ type(XXX) variablename 2179e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2180d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2181d382aafbSBarry Smith 2182d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2183d382aafbSBarry Smith 2184d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2185d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2186d382aafbSBarry Smith $ integer variablename 2187d382aafbSBarry Smith $ 2188d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2189d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2192d382aafbSBarry Smith for only a few PETSc functions. 2193d382aafbSBarry Smith 2194d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2195d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2196d382aafbSBarry Smith you cannot have something like 2197d382aafbSBarry Smith $ PetscInt row,col 2198d382aafbSBarry Smith $ PetscScalar val 2199d382aafbSBarry Smith $ ... 2200d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2201d382aafbSBarry Smith You must instead have 2202d382aafbSBarry Smith $ PetscInt row(1),col(1) 2203d382aafbSBarry Smith $ PetscScalar val(1) 2204d382aafbSBarry Smith $ ... 2205d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith 2208d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2209d382aafbSBarry Smith 2210d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2211d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2212d382aafbSBarry Smith 2213d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2214d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2215d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2218e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2219d382aafbSBarry Smith 2220d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2221d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2222d382aafbSBarry Smith 2223d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2224d382aafbSBarry Smith automatically by "make allfortranstubs". 2225d382aafbSBarry Smith 2226e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2227d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2228d382aafbSBarry Smith include their predecessors 2229d382aafbSBarry Smith 2230d382aafbSBarry Smith Level: beginner 2231d382aafbSBarry Smith 2232d382aafbSBarry Smith M*/ 2233d382aafbSBarry Smith 22347087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 22357087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 22367087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 22377087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 22387087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 22397087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2240d382aafbSBarry Smith 22417087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 22427087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 22437087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 22447087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 22457087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2246d7aa01a8SHong Zhang extern PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 22477087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 22487087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 22497087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 22507087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 22517087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 22527087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 22537087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 22549b67c4b3SDmitry Karpeev extern PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2255d382aafbSBarry Smith 22567087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 22577087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2258d382aafbSBarry Smith 225976bdecfbSBarry Smith /*J 2260d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2261d382aafbSBarry Smith with an optional dynamic library name, for example 2262d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2263d382aafbSBarry Smith 2264d382aafbSBarry Smith Level: beginner 2265d382aafbSBarry Smith 2266e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2267d382aafbSBarry Smith with the option --download-sprng 2268d382aafbSBarry Smith 2269d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 227076bdecfbSBarry Smith J*/ 2271d382aafbSBarry Smith #define PetscRandomType char* 2272d382aafbSBarry Smith #define PETSCRAND "rand" 2273d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2274d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2275d382aafbSBarry Smith 2276d382aafbSBarry Smith /* Logging support */ 22777087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2278d382aafbSBarry Smith 22797087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2280d382aafbSBarry Smith 2281d382aafbSBarry Smith /*S 2282d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2283d382aafbSBarry Smith 2284d382aafbSBarry Smith Level: intermediate 2285d382aafbSBarry Smith 2286d382aafbSBarry Smith Concepts: random numbers 2287d382aafbSBarry Smith 2288d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2289d382aafbSBarry Smith S*/ 2290d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2291d382aafbSBarry Smith 2292d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2293d382aafbSBarry Smith extern PetscFList PetscRandomList; 2294ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2295d382aafbSBarry Smith 22967087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 22977087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22987087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 22997087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 23007087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 23017087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 23027087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 23037087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2304d382aafbSBarry Smith 2305d382aafbSBarry Smith /*MC 2306d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2307d382aafbSBarry Smith 2308d382aafbSBarry Smith Synopsis: 23091890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2310d382aafbSBarry Smith 2311d382aafbSBarry Smith Not Collective 2312d382aafbSBarry Smith 2313d382aafbSBarry Smith Input Parameters: 2314d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2315d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2316d382aafbSBarry Smith . func_name - The name of routine to create method context 2317d382aafbSBarry Smith - create_func - The creation routine itself 2318d382aafbSBarry Smith 2319d382aafbSBarry Smith Notes: 2320d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2323d382aafbSBarry Smith 2324d382aafbSBarry Smith Sample usage: 2325d382aafbSBarry Smith .vb 2326d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2327d382aafbSBarry Smith .ve 2328d382aafbSBarry Smith 2329d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2330d382aafbSBarry Smith .vb 2331d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2332d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2333d382aafbSBarry Smith .ve 2334d382aafbSBarry Smith or at runtime via the option 2335d382aafbSBarry Smith .vb 2336d382aafbSBarry Smith -random_type my_random_name 2337d382aafbSBarry Smith .ve 2338d382aafbSBarry Smith 2339d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2340d382aafbSBarry Smith 2341d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2342d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2343d382aafbSBarry Smith 2344d382aafbSBarry Smith Level: advanced 2345d382aafbSBarry Smith 2346d382aafbSBarry Smith .keywords: PetscRandom, register 2347d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2348d382aafbSBarry Smith M*/ 2349d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2350d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2351d382aafbSBarry Smith #else 2352d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2353d382aafbSBarry Smith #endif 2354d382aafbSBarry Smith 23557087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 23567087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 23577087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 23587087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 23597087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 23607087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 23617087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 23627087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2363fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2364d382aafbSBarry Smith 23657087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 23667087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 23677087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 23687087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 23697087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 23707087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 23717087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2372d382aafbSBarry Smith 23737087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 23747087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 23757087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 23767087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 23777087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 23787087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 23797087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 23807087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23817087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23827087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23837087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23847087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23857087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2386d382aafbSBarry Smith 2387d382aafbSBarry Smith /* 2388d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2389d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2390d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2391d382aafbSBarry Smith PetscBinarySeek(). 2392d382aafbSBarry Smith */ 2393d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2394d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2395d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2396d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2397d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2398d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2399d382aafbSBarry Smith 2400d382aafbSBarry Smith /*E 2401d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2402d382aafbSBarry Smith 2403d382aafbSBarry Smith Level: advanced 2404d382aafbSBarry Smith 2405d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2406d382aafbSBarry Smith E*/ 2407d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 24087087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 24097087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 241046090da6SBarry Smith extern PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2411d382aafbSBarry Smith 24127087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 24137087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 24147087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 24157087cfbeSBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(char*); 24167087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 24177087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2418d382aafbSBarry Smith 24197087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 24207087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 24217087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 24227087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 24237087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2424d382aafbSBarry Smith 24257087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2426d382aafbSBarry Smith 2427d382aafbSBarry Smith /*E 2428d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2429d382aafbSBarry Smith 2430d382aafbSBarry Smith Level: beginner 2431d382aafbSBarry Smith 2432d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2433d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2434d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2435d382aafbSBarry Smith E*/ 243611f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2437d382aafbSBarry Smith 2438d382aafbSBarry Smith /*MC 2439d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2440d382aafbSBarry Smith 2441d382aafbSBarry Smith Level: beginner 2442d382aafbSBarry Smith 2443d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2444eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2445eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2446d382aafbSBarry Smith 2447d382aafbSBarry Smith M*/ 2448d382aafbSBarry Smith 2449d382aafbSBarry Smith /*MC 2450d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2451d382aafbSBarry Smith value into that location 2452d382aafbSBarry Smith 2453d382aafbSBarry Smith Level: beginner 2454d382aafbSBarry Smith 2455d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2456eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2457eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2458d382aafbSBarry Smith 2459d382aafbSBarry Smith M*/ 2460d382aafbSBarry Smith 2461d382aafbSBarry Smith /*MC 2462d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2463d382aafbSBarry Smith 2464d382aafbSBarry Smith Level: beginner 2465d382aafbSBarry Smith 2466d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2467d382aafbSBarry Smith 2468d382aafbSBarry Smith M*/ 2469d382aafbSBarry Smith 2470d382aafbSBarry Smith /*S 2471d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2472d382aafbSBarry Smith 2473d382aafbSBarry Smith Level: advanced 2474d382aafbSBarry Smith 2475d382aafbSBarry Smith Concepts: communicator, create 2476d382aafbSBarry Smith S*/ 2477d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2478d382aafbSBarry Smith 2479d382aafbSBarry Smith struct _n_PetscSubcomm { 2480d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2481d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2482d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2483d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2484d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2485d382aafbSBarry Smith }; 2486d382aafbSBarry Smith 2487638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2488638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2489638faf0bSHong Zhang 24907087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2491fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24927087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24937087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,const PetscSubcommType); 24947087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2495d382aafbSBarry Smith 249682a7e548SBarry Smith #include <petscctable.h> 249782a7e548SBarry Smith 2498d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24996c7e564aSBarry Smith 25009e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 25019e03d832SJed Brown #undef __FUNCT__ 25029e03d832SJed Brown #define __FUNCT__ "User provided function" 25039e03d832SJed Brown 2504d382aafbSBarry Smith #endif 2505