1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11d382aafbSBarry Smith in the conf/variables definition of PETSC_INCLUDE 12d382aafbSBarry Smith */ 13d382aafbSBarry Smith #include "petscconf.h" 14d382aafbSBarry Smith #include "petscfix.h" 15d382aafbSBarry Smith 1673fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1773fca5a0SBarry Smith /* 1873fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 1973fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2073fca5a0SBarry Smith */ 21216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2273fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2373fca5a0SBarry Smith #endif 24216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2573fca5a0SBarry Smith #define _BSD_SOURCE 2673fca5a0SBarry Smith #endif 2773fca5a0SBarry Smith #endif 2873fca5a0SBarry Smith 29d382aafbSBarry Smith /* ========================================================================== */ 30d382aafbSBarry Smith /* 31d382aafbSBarry Smith This facilitates using C version of PETSc from C++ and 32e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 33d382aafbSBarry Smith */ 34d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 35d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 36d382aafbSBarry Smith #endif 371ec50b02SJed Brown 381ec50b02SJed Brown #if defined(__cplusplus) 391ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 401ec50b02SJed Brown #else 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 421ec50b02SJed Brown #endif 43d382aafbSBarry Smith 44d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 45da861ed6SJed Brown #define PETSC_EXTERN extern "C" 46d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 47d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 48d382aafbSBarry Smith #else 49da861ed6SJed Brown #define PETSC_EXTERN extern 50d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 51d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 52d382aafbSBarry Smith #endif 53d382aafbSBarry Smith /* ========================================================================== */ 54d382aafbSBarry Smith /* 55d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 56d382aafbSBarry Smith Web page 57d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 58d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 59d382aafbSBarry Smith src/docs/website/index.html. 60d382aafbSBarry Smith */ 61d382aafbSBarry Smith #include "petscversion.h" 62301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 63d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 64301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 65d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 66301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 67d382aafbSBarry Smith #else 68301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 69301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 70d382aafbSBarry Smith #endif 71d382aafbSBarry Smith 72d382aafbSBarry Smith /*MC 73d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 74d382aafbSBarry Smith 75d382aafbSBarry Smith Input Parameter: 76d382aafbSBarry Smith . len - length of the string 77d382aafbSBarry Smith 78d382aafbSBarry Smith Output Parameter: 79d382aafbSBarry Smith . version - version string 80d382aafbSBarry Smith 81d382aafbSBarry Smith Level: developer 82d382aafbSBarry Smith 83d382aafbSBarry Smith Usage: 84d382aafbSBarry Smith char version[256]; 85d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 86d382aafbSBarry Smith 87d382aafbSBarry Smith Fortran Note: 88d382aafbSBarry Smith This routine is not supported in Fortran. 89d382aafbSBarry Smith 90d382aafbSBarry Smith .seealso: PetscGetProgramName() 91d382aafbSBarry Smith 92d382aafbSBarry Smith M*/ 93d382aafbSBarry Smith 94d382aafbSBarry Smith /* ========================================================================== */ 95d382aafbSBarry Smith 96d382aafbSBarry Smith /* 97d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 98d382aafbSBarry Smith 99d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 100d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 101d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 102d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 103d382aafbSBarry Smith mpicxx.h directly in their code 104d382aafbSBarry Smith */ 105d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 106d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 107d382aafbSBarry Smith #include "mpi.h" 10865013866SBarry Smith 109d382aafbSBarry Smith /* 110d382aafbSBarry Smith Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 111d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 112d382aafbSBarry Smith 113d382aafbSBarry Smith The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 114d382aafbSBarry Smith */ 115d382aafbSBarry Smith #include <stdio.h> 116d382aafbSBarry Smith 117d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 118d382aafbSBarry Smith #if !defined(MPIAPI) 119d382aafbSBarry Smith #define MPIAPI 120d382aafbSBarry Smith #endif 121d382aafbSBarry Smith 122b3506946SBarry Smith 123d382aafbSBarry Smith /*MC 124d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 125d382aafbSBarry Smith 126d382aafbSBarry Smith Level: beginner 127d382aafbSBarry Smith 128d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 129d382aafbSBarry Smith M*/ 130d382aafbSBarry Smith typedef int PetscErrorCode; 131d382aafbSBarry Smith 132d382aafbSBarry Smith /*MC 133d382aafbSBarry Smith 134503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 135d382aafbSBarry Smith (internal integer in the data structure used for error 136d382aafbSBarry Smith checking). These are all defined by an offset from the lowest 1370700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 138d382aafbSBarry Smith 139d382aafbSBarry Smith Level: advanced 140d382aafbSBarry Smith 1410700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 142d382aafbSBarry Smith M*/ 1430700a824SBarry Smith typedef int PetscClassId; 144d382aafbSBarry Smith 145d382aafbSBarry Smith 146d382aafbSBarry Smith /*MC 147d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 148d382aafbSBarry Smith 149d382aafbSBarry Smith Level: intermediate 150d382aafbSBarry Smith 151d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1523b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 153d382aafbSBarry Smith 1543b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 155d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 156d382aafbSBarry Smith 1573b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 158d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 159d382aafbSBarry Smith 160d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 161d382aafbSBarry Smith 162d382aafbSBarry Smith M*/ 163d382aafbSBarry Smith typedef int PetscMPIInt; 164d382aafbSBarry Smith 165d382aafbSBarry Smith /*MC 166d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 167d382aafbSBarry Smith 168d382aafbSBarry Smith Level: intermediate 169d382aafbSBarry Smith 170d382aafbSBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 171d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 172d382aafbSBarry Smith 173d382aafbSBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 174d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 175d382aafbSBarry Smith 176d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 177d382aafbSBarry Smith M*/ 178d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 179d382aafbSBarry Smith 180d382aafbSBarry Smith /*MC 181d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1823b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 183d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 184d382aafbSBarry Smith 185d382aafbSBarry Smith Level: intermediate 186d382aafbSBarry Smith 187d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 188d382aafbSBarry Smith M*/ 189f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 190f505b413SSatish Balay typedef long long Petsc64bitInt; 191f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 192236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 193236ed0a3SSatish Balay #else 194f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 195236ed0a3SSatish Balay #endif 196d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 197236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 198d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 199d382aafbSBarry Smith #else 200d382aafbSBarry Smith typedef int PetscInt; 201d382aafbSBarry Smith #define MPIU_INT MPI_INT 202d382aafbSBarry Smith #endif 203236ed0a3SSatish Balay 204d382aafbSBarry Smith 205702bc34aSSatish Balay /*MC 206702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 207702bc34aSSatish Balay 208702bc34aSSatish Balay Level: intermediate 209702bc34aSSatish Balay 210702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 211702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 212702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 213702bc34aSSatish Balay 214702bc34aSSatish Balay PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 215702bc34aSSatish Balay PETSC_ERR_ARG_OUTOFRANGE. 216702bc34aSSatish Balay 217702bc34aSSatish Balay PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 218702bc34aSSatish Balay generates a PETSC_ERR_ARG_OUTOFRANGE 219702bc34aSSatish Balay 220702bc34aSSatish Balay Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 221702bc34aSSatish Balay if you run ./configure with the option 222702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 223702bc34aSSatish Balay for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can 224702bc34aSSatish Balay purchase a 64 bit integer version of the MKL and use that with a PetscBLASInt of long int. 225702bc34aSSatish Balay 226702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 227702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 228702bc34aSSatish Balay 229702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 230702bc34aSSatish Balay 231702bc34aSSatish Balay M*/ 232702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 233702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 234702bc34aSSatish Balay #else 235702bc34aSSatish Balay typedef int PetscBLASInt; 236702bc34aSSatish Balay #endif 237702bc34aSSatish Balay 23858b60935SBarry Smith /*EC 23958b60935SBarry Smith 24058b60935SBarry Smith PetscPrecision - indicates what precision the object is using 24158b60935SBarry Smith 24258b60935SBarry Smith Level: advanced 24358b60935SBarry Smith 24458b60935SBarry Smith .seealso: PetscObjectSetPrecision() 24558b60935SBarry Smith E*/ 24658b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 24758b60935SBarry Smith extern const char *PetscPrecisions[]; 24858b60935SBarry Smith 24958b60935SBarry Smith 250503cfb0cSBarry Smith /* 251503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 252503cfb0cSBarry Smith */ 253d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 254d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 255d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 256d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 257d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 258d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 259d382aafbSBarry Smith #else 260d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 261d382aafbSBarry Smith #endif 262d382aafbSBarry Smith 263d382aafbSBarry Smith 264d382aafbSBarry Smith /* 265d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 266d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 267d382aafbSBarry Smith */ 268d382aafbSBarry Smith 269d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 270d382aafbSBarry Smith 271d382aafbSBarry Smith /* 272d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 273d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 274d382aafbSBarry Smith */ 275d382aafbSBarry Smith extern FILE* PETSC_STDERR; 276d382aafbSBarry Smith 277d382aafbSBarry Smith /* 278d382aafbSBarry Smith PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 279d382aafbSBarry Smith in conjunction with PETSC_STDOUT, or by itself. 280d382aafbSBarry Smith */ 281d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD; 282d382aafbSBarry Smith 283d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 284d382aafbSBarry Smith /*MC 285d382aafbSBarry Smith PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 286d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 287d382aafbSBarry Smith 288d382aafbSBarry Smith Synopsis: 289d382aafbSBarry Smith PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 290d382aafbSBarry Smith 291eca87e8dSBarry Smith Not collective 292eca87e8dSBarry Smith 293d382aafbSBarry Smith Level: developer 294d382aafbSBarry Smith 295d382aafbSBarry Smith Example: 296d382aafbSBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 297d382aafbSBarry Smith PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 298d382aafbSBarry Smith 299d382aafbSBarry Smith .seealso: PetscPolymorphicFunction() 300d382aafbSBarry Smith 301d382aafbSBarry Smith M*/ 302d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 303d382aafbSBarry Smith 304d382aafbSBarry Smith /*MC 305d382aafbSBarry Smith PetscPolymorphicScalar - allows defining a C++ polymorphic version of 306d382aafbSBarry Smith a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 307d382aafbSBarry Smith 308d382aafbSBarry Smith Synopsis: 309d382aafbSBarry Smith PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 310d382aafbSBarry Smith 311eca87e8dSBarry Smith Not collective 312eca87e8dSBarry Smith 313d382aafbSBarry Smith Level: developer 314d382aafbSBarry Smith 315d382aafbSBarry Smith Example: 316d382aafbSBarry Smith PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 317d382aafbSBarry Smith PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 318d382aafbSBarry Smith 319d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 320d382aafbSBarry Smith 321d382aafbSBarry Smith M*/ 322d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 323d382aafbSBarry Smith 324d382aafbSBarry Smith /*MC 325d382aafbSBarry Smith PetscPolymorphicFunction - allows defining a C++ polymorphic version of 326d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 327d382aafbSBarry Smith and returns the computed value (istead of an error code) 328d382aafbSBarry Smith 329d382aafbSBarry Smith Synopsis: 330d382aafbSBarry Smith PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 331d382aafbSBarry Smith 332eca87e8dSBarry Smith Not collective 333eca87e8dSBarry Smith 334d382aafbSBarry Smith Level: developer 335d382aafbSBarry Smith 336d382aafbSBarry Smith Example: 337d382aafbSBarry Smith PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 338d382aafbSBarry Smith PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 339d382aafbSBarry Smith 340d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine() 341d382aafbSBarry Smith 342d382aafbSBarry Smith M*/ 343d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 344d382aafbSBarry Smith 345d382aafbSBarry Smith #else 346d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) 347d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) 348d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) 349d382aafbSBarry Smith #endif 350d382aafbSBarry Smith 351d382aafbSBarry Smith /*MC 352d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 353d382aafbSBarry Smith 354d382aafbSBarry Smith Synopsis: 355ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 356d382aafbSBarry Smith 357eca87e8dSBarry Smith Not Collective 358eca87e8dSBarry Smith 359d382aafbSBarry Smith Input Parameters: 360d382aafbSBarry Smith . cond - condition or expression 361d382aafbSBarry Smith 362d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 363d382aafbSBarry Smith branch is unlikely. 364d382aafbSBarry Smith 365d382aafbSBarry Smith Level: advanced 366d382aafbSBarry Smith 367d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 368d382aafbSBarry Smith M*/ 369d382aafbSBarry Smith 370d382aafbSBarry Smith /*MC 371d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 372d382aafbSBarry Smith 373d382aafbSBarry Smith Synopsis: 374ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 375d382aafbSBarry Smith 376eca87e8dSBarry Smith Not Collective 377eca87e8dSBarry Smith 378d382aafbSBarry Smith Input Parameters: 379d382aafbSBarry Smith . cond - condition or expression 380d382aafbSBarry Smith 381d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 382d382aafbSBarry Smith branch is likely. 383d382aafbSBarry Smith 384d382aafbSBarry Smith Level: advanced 385d382aafbSBarry Smith 386d382aafbSBarry Smith .seealso: PetscUnlikely() 387d382aafbSBarry Smith M*/ 388d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 389d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 390d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 391d382aafbSBarry Smith #else 392cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 393cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 394d382aafbSBarry Smith #endif 395d382aafbSBarry Smith 396d382aafbSBarry Smith /* 397d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 398d382aafbSBarry Smith */ 399d382aafbSBarry Smith #include "petscmath.h" 400d382aafbSBarry Smith 401d382aafbSBarry Smith /* 402d382aafbSBarry Smith Declare extern C stuff after including external header files 403d382aafbSBarry Smith */ 404d382aafbSBarry Smith 405d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 406d382aafbSBarry Smith 407d382aafbSBarry Smith /* 408d382aafbSBarry Smith Basic PETSc constants 409d382aafbSBarry Smith */ 410d382aafbSBarry Smith 411d382aafbSBarry Smith /*E 412ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 413d382aafbSBarry Smith 414d382aafbSBarry Smith Level: beginner 415d382aafbSBarry Smith 416ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 41734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41834e82e7dSBarry Smith 419d382aafbSBarry Smith E*/ 420ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 421ace3abfcSBarry Smith extern const char *PetscBools[]; 42270b3c8c7SBarry Smith 42370b3c8c7SBarry Smith /*E 42470b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 42570b3c8c7SBarry Smith 42670b3c8c7SBarry Smith Level: beginner 42770b3c8c7SBarry Smith 42870b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 42970b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 43070b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 43170b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43270b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 43370b3c8c7SBarry Smith 43470b3c8c7SBarry Smith E*/ 43570b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 43670b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 437d382aafbSBarry Smith 438d382aafbSBarry Smith /*MC 439ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 440d382aafbSBarry Smith 441d382aafbSBarry Smith Level: beginner 442d382aafbSBarry Smith 443d382aafbSBarry Smith Note: Zero integer 444d382aafbSBarry Smith 445ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 446d382aafbSBarry Smith M*/ 447d382aafbSBarry Smith 448d382aafbSBarry Smith /*MC 449ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 450d382aafbSBarry Smith 451d382aafbSBarry Smith Level: beginner 452d382aafbSBarry Smith 453d382aafbSBarry Smith Note: Nonzero integer 454d382aafbSBarry Smith 455ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 456d382aafbSBarry Smith M*/ 457d382aafbSBarry Smith 458d382aafbSBarry Smith /*MC 459d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 460d382aafbSBarry Smith 461d382aafbSBarry Smith Level: beginner 462d382aafbSBarry Smith 463d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 464d382aafbSBarry Smith some default 465d382aafbSBarry Smith 466d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 467503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 468d382aafbSBarry Smith 46934e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 47034e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 47134e82e7dSBarry Smith 472d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 473d382aafbSBarry Smith 474d382aafbSBarry Smith M*/ 475d382aafbSBarry Smith #define PETSC_NULL 0 476d382aafbSBarry Smith 477d382aafbSBarry Smith /*MC 478d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 479d382aafbSBarry Smith 480d382aafbSBarry Smith Level: beginner 481d382aafbSBarry Smith 482d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 483d382aafbSBarry Smith some default 484d382aafbSBarry Smith 485d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 486d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 487d382aafbSBarry Smith 488d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 489d382aafbSBarry Smith 490d382aafbSBarry Smith M*/ 491d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 492d382aafbSBarry Smith 493d382aafbSBarry Smith /*MC 494557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 495557d4da8SBarry Smith where you wish PETSc to use the default. 496557d4da8SBarry Smith 497557d4da8SBarry Smith Level: beginner 498557d4da8SBarry Smith 499557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 500557d4da8SBarry Smith 501557d4da8SBarry Smith M*/ 502557d4da8SBarry Smith #define PETSC_DECIDE -1 503557d4da8SBarry Smith 504557d4da8SBarry Smith /*MC 505d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 506d382aafbSBarry Smith where you wish PETSc to compute the required value. 507d382aafbSBarry Smith 508d382aafbSBarry Smith Level: beginner 509d382aafbSBarry Smith 510557d4da8SBarry Smith 511557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 512557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 513557d4da8SBarry Smith 514d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 515d382aafbSBarry Smith 516d382aafbSBarry Smith M*/ 517d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 518d382aafbSBarry Smith 519d382aafbSBarry Smith /*MC 520557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 521557d4da8SBarry Smith where you wish PETSc to use the default. 522557d4da8SBarry Smith 523557d4da8SBarry Smith Level: beginner 524557d4da8SBarry Smith 525557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 526557d4da8SBarry Smith 527557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 528557d4da8SBarry Smith 529557d4da8SBarry Smith M*/ 530557d4da8SBarry Smith #define PETSC_DEFAULT -2 531557d4da8SBarry Smith 532557d4da8SBarry Smith /*MC 533d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 534d382aafbSBarry Smith all the processs that PETSc knows about. 535d382aafbSBarry Smith 536d382aafbSBarry Smith Level: beginner 537d382aafbSBarry Smith 538d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 539d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 540d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 541d382aafbSBarry Smith PetscInitialize() 542d382aafbSBarry Smith 543d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 544d382aafbSBarry Smith 545d382aafbSBarry Smith M*/ 546d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 547d382aafbSBarry Smith 548d382aafbSBarry Smith /*MC 549503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 550d382aafbSBarry Smith 551d382aafbSBarry Smith Level: beginner 552d382aafbSBarry Smith 553d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 554d382aafbSBarry Smith 555d382aafbSBarry Smith M*/ 556d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 557d382aafbSBarry Smith 5587087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 5597087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 5608b5db460SBarry Smith extern PetscBool PetscCUSPSynchronize; 561d382aafbSBarry Smith 5627087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 5637087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 5647087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 565d382aafbSBarry Smith 566d382aafbSBarry Smith /*MC 567d382aafbSBarry Smith PetscMalloc - Allocates memory 568d382aafbSBarry Smith 569eca87e8dSBarry Smith Synopsis: 570eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 571eca87e8dSBarry Smith 572eca87e8dSBarry Smith Not Collective 573eca87e8dSBarry Smith 574d382aafbSBarry Smith Input Parameter: 575d382aafbSBarry Smith . m - number of bytes to allocate 576d382aafbSBarry Smith 577d382aafbSBarry Smith Output Parameter: 578d382aafbSBarry Smith . result - memory allocated 579d382aafbSBarry Smith 580d382aafbSBarry Smith Level: beginner 581d382aafbSBarry Smith 582d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 583d382aafbSBarry Smith 584d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 585d382aafbSBarry Smith properly handle not freeing the null pointer. 586d382aafbSBarry Smith 587d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 588d382aafbSBarry Smith 589d382aafbSBarry Smith Concepts: memory allocation 590d382aafbSBarry Smith 591d382aafbSBarry Smith M*/ 5922714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 593d382aafbSBarry Smith 594d382aafbSBarry Smith /*MC 595503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 596d382aafbSBarry Smith 597d382aafbSBarry Smith Synopsis: 598d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 599d382aafbSBarry Smith 600eca87e8dSBarry Smith Not Collective 601eca87e8dSBarry Smith 602eca87e8dSBarry Smith Input Parameters: 603eca87e8dSBarry Smith . addr - address to align (any pointer type) 604eca87e8dSBarry Smith 605d382aafbSBarry Smith Level: developer 606d382aafbSBarry Smith 607d382aafbSBarry Smith .seealso: PetscMallocAlign() 608d382aafbSBarry Smith 609d382aafbSBarry Smith Concepts: memory allocation 610d382aafbSBarry Smith M*/ 611d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 612d382aafbSBarry Smith 613d382aafbSBarry Smith /*MC 614503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 615d382aafbSBarry Smith 616eca87e8dSBarry Smith Synopsis: 617eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 618eca87e8dSBarry Smith 619eca87e8dSBarry Smith Not Collective 620eca87e8dSBarry Smith 621d382aafbSBarry Smith Input Parameter: 622d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 623d382aafbSBarry Smith . t1 - type of first memory elements 624d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 625d382aafbSBarry Smith - t2 - type of second memory elements 626d382aafbSBarry Smith 627d382aafbSBarry Smith Output Parameter: 628d382aafbSBarry Smith + r1 - memory allocated in first chunk 629d382aafbSBarry Smith - r2 - memory allocated in second chunk 630d382aafbSBarry Smith 631d382aafbSBarry Smith Level: developer 632d382aafbSBarry Smith 633d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 634d382aafbSBarry Smith 635d382aafbSBarry Smith Concepts: memory allocation 636d382aafbSBarry Smith 637d382aafbSBarry Smith M*/ 638d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 639d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 640d382aafbSBarry Smith #else 6413b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 642d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 643d382aafbSBarry Smith #endif 644d382aafbSBarry Smith 645d382aafbSBarry Smith /*MC 646503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 647d382aafbSBarry Smith 648eca87e8dSBarry Smith Synopsis: 649eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 650eca87e8dSBarry Smith 651eca87e8dSBarry Smith Not Collective 652eca87e8dSBarry Smith 653d382aafbSBarry Smith Input Parameter: 654d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 655d382aafbSBarry Smith . t1 - type of first memory elements 656d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 657d382aafbSBarry Smith . t2 - type of second memory elements 658d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 659d382aafbSBarry Smith - t3 - type of third memory elements 660d382aafbSBarry Smith 661d382aafbSBarry Smith Output Parameter: 662d382aafbSBarry Smith + r1 - memory allocated in first chunk 663d382aafbSBarry Smith . r2 - memory allocated in second chunk 664d382aafbSBarry Smith - r3 - memory allocated in third chunk 665d382aafbSBarry Smith 666d382aafbSBarry Smith Level: developer 667d382aafbSBarry Smith 668d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 669d382aafbSBarry Smith 670d382aafbSBarry Smith Concepts: memory allocation 671d382aafbSBarry Smith 672d382aafbSBarry Smith M*/ 673d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 674d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 675d382aafbSBarry Smith #else 6763b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 677d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 678d382aafbSBarry Smith #endif 679d382aafbSBarry Smith 680d382aafbSBarry Smith /*MC 681503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 682d382aafbSBarry Smith 683eca87e8dSBarry Smith Synopsis: 684eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 685eca87e8dSBarry Smith 686eca87e8dSBarry Smith Not Collective 687eca87e8dSBarry Smith 688d382aafbSBarry Smith Input Parameter: 689d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 690d382aafbSBarry Smith . t1 - type of first memory elements 691d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 692d382aafbSBarry Smith . t2 - type of second memory elements 693d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 694d382aafbSBarry Smith . t3 - type of third memory elements 695d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 696d382aafbSBarry Smith - t4 - type of fourth memory elements 697d382aafbSBarry Smith 698d382aafbSBarry Smith Output Parameter: 699d382aafbSBarry Smith + r1 - memory allocated in first chunk 700d382aafbSBarry Smith . r2 - memory allocated in second chunk 701d382aafbSBarry Smith . r3 - memory allocated in third chunk 702d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 703d382aafbSBarry Smith 704d382aafbSBarry Smith Level: developer 705d382aafbSBarry Smith 706d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 707d382aafbSBarry Smith 708d382aafbSBarry Smith Concepts: memory allocation 709d382aafbSBarry Smith 710d382aafbSBarry Smith M*/ 711d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 712d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 713d382aafbSBarry Smith #else 714d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 7153b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 716d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 717d382aafbSBarry Smith #endif 718d382aafbSBarry Smith 719d382aafbSBarry Smith /*MC 720503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 721d382aafbSBarry Smith 722eca87e8dSBarry Smith Synopsis: 723eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 724eca87e8dSBarry Smith 725eca87e8dSBarry Smith Not Collective 726eca87e8dSBarry Smith 727d382aafbSBarry Smith Input Parameter: 728d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 729d382aafbSBarry Smith . t1 - type of first memory elements 730d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 731d382aafbSBarry Smith . t2 - type of second memory elements 732d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 733d382aafbSBarry Smith . t3 - type of third memory elements 734d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 735d382aafbSBarry Smith . t4 - type of fourth memory elements 736d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 737d382aafbSBarry Smith - t5 - type of fifth memory elements 738d382aafbSBarry Smith 739d382aafbSBarry Smith Output Parameter: 740d382aafbSBarry Smith + r1 - memory allocated in first chunk 741d382aafbSBarry Smith . r2 - memory allocated in second chunk 742d382aafbSBarry Smith . r3 - memory allocated in third chunk 743d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 744d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 745d382aafbSBarry Smith 746d382aafbSBarry Smith Level: developer 747d382aafbSBarry Smith 748d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 749d382aafbSBarry Smith 750d382aafbSBarry Smith Concepts: memory allocation 751d382aafbSBarry Smith 752d382aafbSBarry Smith M*/ 753d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 754d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 755d382aafbSBarry Smith #else 756d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 7573b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 758d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 759d382aafbSBarry Smith #endif 760d382aafbSBarry Smith 761d382aafbSBarry Smith 762d382aafbSBarry Smith /*MC 763503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 764d382aafbSBarry Smith 765eca87e8dSBarry Smith Synopsis: 766eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 767eca87e8dSBarry Smith 768eca87e8dSBarry Smith Not Collective 769eca87e8dSBarry Smith 770d382aafbSBarry Smith Input Parameter: 771d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 772d382aafbSBarry Smith . t1 - type of first memory elements 773d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 774d382aafbSBarry Smith . t2 - type of second memory elements 775d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 776d382aafbSBarry Smith . t3 - type of third memory elements 777d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 778d382aafbSBarry Smith . t4 - type of fourth memory elements 779d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 780d382aafbSBarry Smith . t5 - type of fifth memory elements 781d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 782d382aafbSBarry Smith - t6 - type of sixth memory elements 783d382aafbSBarry Smith 784d382aafbSBarry Smith Output Parameter: 785d382aafbSBarry Smith + r1 - memory allocated in first chunk 786d382aafbSBarry Smith . r2 - memory allocated in second chunk 787d382aafbSBarry Smith . r3 - memory allocated in third chunk 788d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 789d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 790d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 791d382aafbSBarry Smith 792d382aafbSBarry Smith Level: developer 793d382aafbSBarry Smith 794d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 795d382aafbSBarry Smith 796d382aafbSBarry Smith Concepts: memory allocation 797d382aafbSBarry Smith 798d382aafbSBarry Smith M*/ 799d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 800d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 801d382aafbSBarry Smith #else 802d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 8033b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 804d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 805d382aafbSBarry Smith #endif 806d382aafbSBarry Smith 807d382aafbSBarry Smith /*MC 808503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 809d382aafbSBarry Smith 810eca87e8dSBarry Smith Synopsis: 811eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 812eca87e8dSBarry Smith 813eca87e8dSBarry Smith Not Collective 814eca87e8dSBarry Smith 815d382aafbSBarry Smith Input Parameter: 816d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 817d382aafbSBarry Smith . t1 - type of first memory elements 818d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 819d382aafbSBarry Smith . t2 - type of second memory elements 820d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 821d382aafbSBarry Smith . t3 - type of third memory elements 822d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 823d382aafbSBarry Smith . t4 - type of fourth memory elements 824d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 825d382aafbSBarry Smith . t5 - type of fifth memory elements 826d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 827d382aafbSBarry Smith . t6 - type of sixth memory elements 828d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 829d382aafbSBarry Smith - t7 - type of sixth memory elements 830d382aafbSBarry Smith 831d382aafbSBarry Smith Output Parameter: 832d382aafbSBarry Smith + r1 - memory allocated in first chunk 833d382aafbSBarry Smith . r2 - memory allocated in second chunk 834d382aafbSBarry Smith . r3 - memory allocated in third chunk 835d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 836d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 837d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 838eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 839d382aafbSBarry Smith 840d382aafbSBarry Smith Level: developer 841d382aafbSBarry Smith 842d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 843d382aafbSBarry Smith 844d382aafbSBarry Smith Concepts: memory allocation 845d382aafbSBarry Smith 846d382aafbSBarry Smith M*/ 847d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 848d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 849d382aafbSBarry Smith #else 850d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 8513b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 852d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 853d382aafbSBarry Smith #endif 854d382aafbSBarry Smith 855d382aafbSBarry Smith /*MC 856503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 857d382aafbSBarry Smith 858eca87e8dSBarry Smith Synopsis: 859eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 860eca87e8dSBarry Smith 861eca87e8dSBarry Smith Not Collective 862eca87e8dSBarry Smith 863d382aafbSBarry Smith Input Parameter: 864d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 865d382aafbSBarry Smith 866d382aafbSBarry Smith Output Parameter: 867d382aafbSBarry Smith . result - memory allocated 868d382aafbSBarry Smith 869d382aafbSBarry Smith Level: beginner 870d382aafbSBarry Smith 871ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 872d382aafbSBarry Smith 873d382aafbSBarry Smith Concepts: memory allocation 874d382aafbSBarry Smith 875d382aafbSBarry Smith M*/ 876d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 877ad0619ddSBarry Smith 878ad0619ddSBarry Smith /*MC 879ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 880ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 881ad0619ddSBarry Smith 882ad0619ddSBarry Smith Synopsis: 883ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 884ad0619ddSBarry Smith 885ad0619ddSBarry Smith Not Collective 886ad0619ddSBarry Smith 887ad0619ddSBarry Smith Input Parameter: 888ad0619ddSBarry Smith + obj - object memory is logged to 889ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 890ad0619ddSBarry Smith 891ad0619ddSBarry Smith Output Parameter: 892ad0619ddSBarry Smith . result - memory allocated 893ad0619ddSBarry Smith 894ad0619ddSBarry Smith Level: developer 895ad0619ddSBarry Smith 896ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 897ad0619ddSBarry Smith 898ad0619ddSBarry Smith Concepts: memory allocation 899ad0619ddSBarry Smith 900ad0619ddSBarry Smith M*/ 901d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 902d382aafbSBarry Smith 903d382aafbSBarry Smith /*MC 904d382aafbSBarry Smith PetscFree - Frees memory 905d382aafbSBarry Smith 906eca87e8dSBarry Smith Synopsis: 907eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 908eca87e8dSBarry Smith 909eca87e8dSBarry Smith Not Collective 910eca87e8dSBarry Smith 911d382aafbSBarry Smith Input Parameter: 912d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 913d382aafbSBarry Smith 914d382aafbSBarry Smith Level: beginner 915d382aafbSBarry Smith 916d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 917d382aafbSBarry Smith 918d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 919d382aafbSBarry Smith 920d382aafbSBarry Smith Concepts: memory allocation 921d382aafbSBarry Smith 922d382aafbSBarry Smith M*/ 92312537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 924d382aafbSBarry Smith 925d382aafbSBarry Smith /*MC 926d382aafbSBarry Smith PetscFreeVoid - Frees memory 927d382aafbSBarry Smith 928d382aafbSBarry Smith Synopsis: 929d382aafbSBarry Smith void PetscFreeVoid(void *memory) 930d382aafbSBarry Smith 931eca87e8dSBarry Smith Not Collective 932eca87e8dSBarry Smith 933eca87e8dSBarry Smith Input Parameter: 934eca87e8dSBarry Smith . memory - memory to free 935eca87e8dSBarry Smith 936d382aafbSBarry Smith Level: beginner 937d382aafbSBarry Smith 938d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 939d382aafbSBarry Smith 940d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 941d382aafbSBarry Smith 942d382aafbSBarry Smith Concepts: memory allocation 943d382aafbSBarry Smith 944d382aafbSBarry Smith M*/ 9452714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 946d382aafbSBarry Smith 947d382aafbSBarry Smith 948d382aafbSBarry Smith /*MC 949d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 950d382aafbSBarry Smith 951eca87e8dSBarry Smith Synopsis: 952eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 953eca87e8dSBarry Smith 954eca87e8dSBarry Smith Not Collective 955eca87e8dSBarry Smith 956d382aafbSBarry Smith Input Parameter: 957d382aafbSBarry Smith + memory1 - memory to free 958d382aafbSBarry Smith - memory2 - 2nd memory to free 959d382aafbSBarry Smith 960d382aafbSBarry Smith Level: developer 961d382aafbSBarry Smith 962d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 963d382aafbSBarry Smith 964d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 965d382aafbSBarry Smith 966d382aafbSBarry Smith Concepts: memory allocation 967d382aafbSBarry Smith 968d382aafbSBarry Smith M*/ 969d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 970d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 971d382aafbSBarry Smith #else 97281dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 973d382aafbSBarry Smith #endif 974d382aafbSBarry Smith 975d382aafbSBarry Smith /*MC 976d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 977d382aafbSBarry Smith 978eca87e8dSBarry Smith Synopsis: 979eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 980eca87e8dSBarry Smith 981eca87e8dSBarry Smith Not Collective 982eca87e8dSBarry Smith 983d382aafbSBarry Smith Input Parameter: 984d382aafbSBarry Smith + memory1 - memory to free 985d382aafbSBarry Smith . memory2 - 2nd memory to free 986d382aafbSBarry Smith - memory3 - 3rd memory to free 987d382aafbSBarry Smith 988d382aafbSBarry Smith Level: developer 989d382aafbSBarry Smith 990d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 991d382aafbSBarry Smith 992d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 993d382aafbSBarry Smith 994d382aafbSBarry Smith Concepts: memory allocation 995d382aafbSBarry Smith 996d382aafbSBarry Smith M*/ 997d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 998d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 999d382aafbSBarry Smith #else 100081dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 1001d382aafbSBarry Smith #endif 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith /*MC 1004d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1005d382aafbSBarry Smith 1006eca87e8dSBarry Smith Synopsis: 1007eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1008eca87e8dSBarry Smith 1009eca87e8dSBarry Smith Not Collective 1010eca87e8dSBarry Smith 1011d382aafbSBarry Smith Input Parameter: 1012d382aafbSBarry Smith + m1 - memory to free 1013d382aafbSBarry Smith . m2 - 2nd memory to free 1014d382aafbSBarry Smith . m3 - 3rd memory to free 1015d382aafbSBarry Smith - m4 - 4th memory to free 1016d382aafbSBarry Smith 1017d382aafbSBarry Smith Level: developer 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1020d382aafbSBarry Smith 1021d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1022d382aafbSBarry Smith 1023d382aafbSBarry Smith Concepts: memory allocation 1024d382aafbSBarry Smith 1025d382aafbSBarry Smith M*/ 1026d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1027d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1028d382aafbSBarry Smith #else 102981dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1030d382aafbSBarry Smith #endif 1031d382aafbSBarry Smith 1032d382aafbSBarry Smith /*MC 1033d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1034d382aafbSBarry Smith 1035eca87e8dSBarry Smith Synopsis: 1036eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1037eca87e8dSBarry Smith 1038eca87e8dSBarry Smith Not Collective 1039eca87e8dSBarry Smith 1040d382aafbSBarry Smith Input Parameter: 1041d382aafbSBarry Smith + m1 - memory to free 1042d382aafbSBarry Smith . m2 - 2nd memory to free 1043d382aafbSBarry Smith . m3 - 3rd memory to free 1044d382aafbSBarry Smith . m4 - 4th memory to free 1045d382aafbSBarry Smith - m5 - 5th memory to free 1046d382aafbSBarry Smith 1047d382aafbSBarry Smith Level: developer 1048d382aafbSBarry Smith 1049d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1050d382aafbSBarry Smith 1051d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1052d382aafbSBarry Smith 1053d382aafbSBarry Smith Concepts: memory allocation 1054d382aafbSBarry Smith 1055d382aafbSBarry Smith M*/ 1056d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1057d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1058d382aafbSBarry Smith #else 105981dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1060d382aafbSBarry Smith #endif 1061d382aafbSBarry Smith 1062d382aafbSBarry Smith 1063d382aafbSBarry Smith /*MC 1064d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1065d382aafbSBarry Smith 1066eca87e8dSBarry Smith Synopsis: 1067eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1068eca87e8dSBarry Smith 1069eca87e8dSBarry Smith Not Collective 1070eca87e8dSBarry Smith 1071d382aafbSBarry Smith Input Parameter: 1072d382aafbSBarry Smith + m1 - memory to free 1073d382aafbSBarry Smith . m2 - 2nd memory to free 1074d382aafbSBarry Smith . m3 - 3rd memory to free 1075d382aafbSBarry Smith . m4 - 4th memory to free 1076d382aafbSBarry Smith . m5 - 5th memory to free 1077d382aafbSBarry Smith - m6 - 6th memory to free 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith 1080d382aafbSBarry Smith Level: developer 1081d382aafbSBarry Smith 1082d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1083d382aafbSBarry Smith 1084d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1085d382aafbSBarry Smith 1086d382aafbSBarry Smith Concepts: memory allocation 1087d382aafbSBarry Smith 1088d382aafbSBarry Smith M*/ 1089d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1090d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1091d382aafbSBarry Smith #else 109281dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1093d382aafbSBarry Smith #endif 1094d382aafbSBarry Smith 1095d382aafbSBarry Smith /*MC 1096d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1097d382aafbSBarry Smith 1098eca87e8dSBarry Smith Synopsis: 1099eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1100eca87e8dSBarry Smith 1101eca87e8dSBarry Smith Not Collective 1102eca87e8dSBarry Smith 1103d382aafbSBarry Smith Input Parameter: 1104d382aafbSBarry Smith + m1 - memory to free 1105d382aafbSBarry Smith . m2 - 2nd memory to free 1106d382aafbSBarry Smith . m3 - 3rd memory to free 1107d382aafbSBarry Smith . m4 - 4th memory to free 1108d382aafbSBarry Smith . m5 - 5th memory to free 1109d382aafbSBarry Smith . m6 - 6th memory to free 1110d382aafbSBarry Smith - m7 - 7th memory to free 1111d382aafbSBarry Smith 1112d382aafbSBarry Smith 1113d382aafbSBarry Smith Level: developer 1114d382aafbSBarry Smith 1115d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1116d382aafbSBarry Smith 1117d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1118d382aafbSBarry Smith PetscMalloc7() 1119d382aafbSBarry Smith 1120d382aafbSBarry Smith Concepts: memory allocation 1121d382aafbSBarry Smith 1122d382aafbSBarry Smith M*/ 1123d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1124d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1125d382aafbSBarry Smith #else 112681dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1127d382aafbSBarry Smith #endif 1128d382aafbSBarry Smith 11297087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 11307087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 11317087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 11327087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith /* 113566d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1136d382aafbSBarry Smith */ 11377087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 11387087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 11397087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 11407087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 11417087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 11427087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 11437087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 114418a2528dSJed Brown extern PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1145d382aafbSBarry Smith 1146d382aafbSBarry Smith 1147d382aafbSBarry Smith /*E 1148d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1149d382aafbSBarry Smith 1150d382aafbSBarry Smith Level: beginner 1151d382aafbSBarry Smith 1152d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1153d382aafbSBarry Smith 1154d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1155d382aafbSBarry Smith PetscDataTypeGetSize() 1156d382aafbSBarry Smith 1157d382aafbSBarry Smith E*/ 1158d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 115959a34000SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType; 1160d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1163d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1164d382aafbSBarry Smith #else 1165ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1166d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 116759a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 116859a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1169d382aafbSBarry Smith #else 1170d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1171d382aafbSBarry Smith #endif 1172d382aafbSBarry Smith #endif 1173ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1174d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 117559a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 117659a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1177d382aafbSBarry Smith #else 1178d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1179d382aafbSBarry Smith #endif 1180d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1181d382aafbSBarry Smith 11827087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11837087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11847087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1185d382aafbSBarry Smith 1186d382aafbSBarry Smith /* 1187d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1188d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1189d382aafbSBarry Smith functionality and/or error checking. 1190d382aafbSBarry Smith */ 11917087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11927087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11937087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11947087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11957087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11967087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11977087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11987087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11997087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 12007087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 12017087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 12027087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 12037087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 12047087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 12057087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 12067087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 12077087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 12087087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 12097087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 121074722a09SBarry Smith extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 12117ba3a57cSBarry Smith extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 12127087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 12137087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1214d382aafbSBarry Smith 1215d382aafbSBarry Smith /*S 1216d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1217d382aafbSBarry Smith 1218d382aafbSBarry Smith Level: intermediate 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1221d382aafbSBarry Smith S*/ 1222d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1223d382aafbSBarry Smith 12247087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 12257087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 12268c74ee41SBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken*); 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith /* 1229d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1230d382aafbSBarry Smith */ 12317087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 1232ce63c4c1SBarry Smith #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 12337087cfbeSBarry Smith extern MPI_Op MPIU_SUM; 1234d382aafbSBarry Smith #else 1235d382aafbSBarry Smith #define MPIU_SUM MPI_SUM 1236d382aafbSBarry Smith #endif 1237ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 1238d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1239d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1240d9822059SBarry Smith #else 1241d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1242d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1243d9822059SBarry Smith #endif 12447087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1245d382aafbSBarry Smith 1246a25532f0SBarry Smith extern PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1247a25532f0SBarry Smith extern PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1248eb3f98d2SBarry Smith 1249d382aafbSBarry Smith /*S 1250d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith Level: beginner 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith Note: This is the base class from which all objects appear. 1255d382aafbSBarry Smith 12561890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1257d382aafbSBarry Smith S*/ 1258d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith /*S 1261d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1262d382aafbSBarry Smith by string name 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith Level: advanced 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy() 1267d382aafbSBarry Smith S*/ 1268d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1269d382aafbSBarry Smith 1270e4d1774bSDmitry Karpeev /*S 1271e4d1774bSDmitry Karpeev PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries, 1272e4d1774bSDmitry Karpeev accessed by string op name together with string argument types. 1273e4d1774bSDmitry Karpeev 1274e4d1774bSDmitry Karpeev Level: advanced 1275e4d1774bSDmitry Karpeev 1276e4d1774bSDmitry Karpeev .seealso: PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy() 1277e4d1774bSDmitry Karpeev S*/ 1278e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList; 1279e4d1774bSDmitry Karpeev 1280d382aafbSBarry Smith /*E 1281d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith Level: beginner 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1290d382aafbSBarry Smith 1291d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1294d382aafbSBarry Smith 1295d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1296d382aafbSBarry Smith E*/ 1297d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1298d382aafbSBarry Smith 1299d382aafbSBarry Smith #include "petscviewer.h" 1300d382aafbSBarry Smith #include "petscoptions.h" 1301d382aafbSBarry Smith 13020700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 13037087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 13047087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 13057087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith /* 1308d382aafbSBarry Smith Routines that get memory usage information from the OS 1309d382aafbSBarry Smith */ 13107087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 13117087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 13127087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 13137087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1314d382aafbSBarry Smith 13157087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 13167087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 13177087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 13187087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1319d382aafbSBarry Smith 1320d382aafbSBarry Smith /* 1321d382aafbSBarry Smith Initialization of PETSc 1322d382aafbSBarry Smith */ 13237087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1324d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 13257087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 13267087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 13277087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 13287087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 132909573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 13307087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 13317087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 13327087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1333d382aafbSBarry Smith 13347087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 13357087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1336d382aafbSBarry Smith 1337d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 133885afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 133985afcc9aSBarry Smith extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 134085afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFinalize(void); 134185afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 134285afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 134385afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 134485afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1345d382aafbSBarry Smith 13467087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 13477087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 13487087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 13495180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1350d382aafbSBarry Smith 1351d382aafbSBarry Smith /* 1352d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 1353d382aafbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be 1354d382aafbSBarry Smith C++. 1355d382aafbSBarry Smith */ 1356d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1357d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1358d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1359d382aafbSBarry Smith 1360d382aafbSBarry Smith /* 1361d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1362d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1363503cfb0cSBarry Smith 1364503cfb0cSBarry Smith Level: developer 1365503cfb0cSBarry Smith 1366503cfb0cSBarry Smith .seealso: PetscUseMethod() 1367d382aafbSBarry Smith */ 1368d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1369d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1370d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1371d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1372d382aafbSBarry Smith } 1373503cfb0cSBarry Smith 1374503cfb0cSBarry Smith /* 1375503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1376503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1377503cfb0cSBarry Smith 1378503cfb0cSBarry Smith Level: developer 1379503cfb0cSBarry Smith 1380503cfb0cSBarry Smith .seealso: PetscTryMethod() 1381503cfb0cSBarry Smith */ 1382d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1383d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1384d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1385d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1386703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1387d382aafbSBarry Smith } 1388503cfb0cSBarry Smith 1389d382aafbSBarry Smith /* 1390d382aafbSBarry Smith Functions that can act on any PETSc object. 1391d382aafbSBarry Smith */ 1392fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13937087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13947087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1395609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13967087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13977087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13987087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13997087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 14007087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 14017087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 14027087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 14037087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 14047087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 14057087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 14067087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 14077087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 14087087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 14097087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 14107087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 14116ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 14127087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 14137087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 14147087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 14157087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 14167087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 14177087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 14187087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 14197087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1420d382aafbSBarry Smith 1421d382aafbSBarry Smith /*MC 1422d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1423d382aafbSBarry Smith 1424eca87e8dSBarry Smith Synopsis: 1425eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1426eca87e8dSBarry Smith 1427ad4df100SBarry Smith Logically Collective on PetscObject 1428d382aafbSBarry Smith 1429d382aafbSBarry Smith Input Parameters: 1430d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1431d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1432d382aafbSBarry Smith . name - name associated with the child function 1433d382aafbSBarry Smith . fname - name of the function 1434d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1435d382aafbSBarry Smith 1436d382aafbSBarry Smith Level: advanced 1437d382aafbSBarry Smith 1438d382aafbSBarry Smith 1439d382aafbSBarry Smith Notes: 1440d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1441d382aafbSBarry Smith 1442d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1443d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1444d382aafbSBarry Smith 1445d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 144620de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1447d382aafbSBarry Smith enabled. 1448d382aafbSBarry Smith 1449d382aafbSBarry Smith Concepts: objects^composing functions 1450d382aafbSBarry Smith Concepts: composing functions 1451d382aafbSBarry Smith Concepts: functions^querying 1452d382aafbSBarry Smith Concepts: objects^querying 1453d382aafbSBarry Smith Concepts: querying objects 1454d382aafbSBarry Smith 1455d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1456d382aafbSBarry Smith M*/ 1457d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1458d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1459d382aafbSBarry Smith #else 1460d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1461d382aafbSBarry Smith #endif 1462d382aafbSBarry Smith 14637087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 14647087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 14657087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 14667087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 14677087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 14687087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 14697087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 14707087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 14717087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 14727087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 14737087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 14747087cfbeSBarry Smith extern PetscErrorCode PetscTypeCompare(PetscObject,const char[],PetscBool *); 14752b12f010SJed Brown extern PetscErrorCode PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14767087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14777087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1478d382aafbSBarry Smith 1479d382aafbSBarry Smith /* 1480d382aafbSBarry Smith Defines PETSc error handling. 1481d382aafbSBarry Smith */ 1482d382aafbSBarry Smith #include "petscerror.h" 1483d382aafbSBarry Smith 1484d382aafbSBarry Smith /*S 1485503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1486d382aafbSBarry Smith 14871d0fab5eSBarry Smith Level: developer 1488d382aafbSBarry Smith 14891d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14901d0fab5eSBarry Smith 14911d0fab5eSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1492d382aafbSBarry Smith S*/ 1493d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1494d382aafbSBarry Smith 1495fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14967087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1497bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14987087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14996ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 15007087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1501d382aafbSBarry Smith 1502d382aafbSBarry Smith /* 1503503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1504d382aafbSBarry Smith link libraries that will be loaded as needed. 1505d382aafbSBarry Smith */ 15067087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 15077087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 15084b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 15097087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1510d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1511d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1512d382aafbSBarry Smith #else 1513d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1514d382aafbSBarry Smith #endif 15157087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 15167087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 15177087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 15187087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1519d382aafbSBarry Smith 152048703020SDmitry Karpeev /* 152148703020SDmitry Karpeev Multiple dispatch operation function lists. Lists of names of routines with corresponding 152248703020SDmitry Karpeev argument type names with function pointers or in dynamic link libraries that will be loaded 152348703020SDmitry Karpeev as needed. Search on the op name and argument type names. 152448703020SDmitry Karpeev */ 15252356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]); 152648703020SDmitry Karpeev extern PetscErrorCode PetscOpFListDestroy(PetscOpFList*); 15272356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]); 152848703020SDmitry Karpeev extern PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer); 1529d382aafbSBarry Smith /*S 1530d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1531d382aafbSBarry Smith 1532d382aafbSBarry Smith Level: advanced 1533d382aafbSBarry Smith 153420de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1535d382aafbSBarry Smith 1536d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1537d382aafbSBarry Smith S*/ 1538d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1539d44a1e48SBarry Smith extern PetscDLLibrary PetscDLLibrariesLoaded; 15407087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 15417087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 15427087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 15437087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 15447087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 15457087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 15467087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1547d382aafbSBarry Smith 1548d382aafbSBarry Smith /* 1549a5a3d712SDmitry Karpeev PetscShell support. Needs to be better documented. 155005846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 155105846914SDmitry Karpeev */ 1552a5a3d712SDmitry Karpeev #include "petscshell.h" 155305846914SDmitry Karpeev 155405846914SDmitry Karpeev /* 1555d382aafbSBarry Smith Useful utility routines 1556d382aafbSBarry Smith */ 15577087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 15587087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 15597087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1560d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1561d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 15627087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1563d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1564d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 15657087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 15667087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1567d382aafbSBarry Smith 1568503cfb0cSBarry Smith /* 1569ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1570503cfb0cSBarry Smith 1571503cfb0cSBarry Smith Notes: This is useful in cases like 1572503cfb0cSBarry Smith $ int *a; 1573ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1574ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1575503cfb0cSBarry Smith */ 1576d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1577503cfb0cSBarry Smith 1578d382aafbSBarry Smith /* 1579d382aafbSBarry Smith Defines basic graphics available from PETSc. 1580d382aafbSBarry Smith */ 1581d382aafbSBarry Smith #include "petscdraw.h" 1582d382aafbSBarry Smith 1583d382aafbSBarry Smith /* 1584d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1585d382aafbSBarry Smith */ 1586b45d2f2cSJed Brown #include "petsc-private/petscimpl.h" 1587503cfb0cSBarry Smith 1588238ccf28SShri Abhyankar 1589d382aafbSBarry Smith /*MC 1590d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1591d382aafbSBarry Smith 1592d382aafbSBarry Smith Synopsis: 1593d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1594d382aafbSBarry Smith 1595eca87e8dSBarry Smith Not Collective 1596eca87e8dSBarry Smith 1597d382aafbSBarry Smith Input Parameters: 1598d382aafbSBarry Smith . format - the usual printf() format string 1599d382aafbSBarry Smith 1600d382aafbSBarry Smith Options Database Keys: 1601d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1602d382aafbSBarry Smith (default) stderr 1603d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1604d382aafbSBarry Smith error is handled.) 1605d382aafbSBarry Smith 1606d382aafbSBarry Smith Notes: Use 1607d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1608d382aafbSBarry Smith $ error is handled.) and 1609d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1610c9a19010SBarry Smith $ of you can use your own function 1611d382aafbSBarry Smith 1612d382aafbSBarry Smith Use 1613d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1614d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith Use 1617d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1618d382aafbSBarry Smith 1619d382aafbSBarry Smith Level: developer 1620d382aafbSBarry Smith 1621d382aafbSBarry Smith Fortran Note: 1622d382aafbSBarry Smith This routine is not supported in Fortran. 1623d382aafbSBarry Smith 1624d382aafbSBarry Smith Concepts: error messages^printing 1625d382aafbSBarry Smith Concepts: printing^error messages 1626d382aafbSBarry Smith 1627c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1628d382aafbSBarry Smith M*/ 16297087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1630d382aafbSBarry Smith 1631d382aafbSBarry Smith /*MC 1632d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1633d382aafbSBarry Smith 1634d382aafbSBarry Smith Synopsis: 1635d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1636d382aafbSBarry Smith 1637eca87e8dSBarry Smith Not Collective 1638eca87e8dSBarry Smith 1639d382aafbSBarry Smith Input Parameters: 1640d382aafbSBarry Smith . format - the usual printf() format string 1641d382aafbSBarry Smith 1642d382aafbSBarry Smith Level: developer 1643d382aafbSBarry Smith 1644d382aafbSBarry Smith Fortran Note: 1645d382aafbSBarry Smith This routine is not supported in Fortran. 1646d382aafbSBarry Smith 1647d382aafbSBarry Smith Concepts: help messages^printing 1648d382aafbSBarry Smith Concepts: printing^help messages 1649d382aafbSBarry Smith 1650d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1651d382aafbSBarry Smith M*/ 16527087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1653d382aafbSBarry Smith 1654fcfd50ebSBarry Smith /* 1655fcfd50ebSBarry Smith Defines PETSc profiling. 1656fcfd50ebSBarry Smith */ 1657fcfd50ebSBarry Smith #include "petsclog.h" 1658fcfd50ebSBarry Smith 1659fcfd50ebSBarry Smith /* 1660fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1661fcfd50ebSBarry Smith */ 1662fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1663fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1664fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1665fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1666fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1667fcfd50ebSBarry Smith #else 1668fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1669fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1670fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1671fcfd50ebSBarry Smith #endif 1672fcfd50ebSBarry Smith 1673fcfd50ebSBarry Smith /* 1674fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1675fcfd50ebSBarry Smith */ 1676fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1677fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1678fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1679fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1680fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1681fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1682257d2499SJed Brown extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1683fcfd50ebSBarry Smith 1684fcfd50ebSBarry Smith 1685fcfd50ebSBarry Smith 1686fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1687fcfd50ebSBarry Smith #include <stdarg.h> 1688fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1689fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1690fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1691fcfd50ebSBarry Smith 1692fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1693fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1694fcfd50ebSBarry Smith #endif 1695fcfd50ebSBarry Smith 169609573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 169709573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 169809573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1699d382aafbSBarry Smith 1700d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 17017087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 17027087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1703d382aafbSBarry Smith #endif 1704d382aafbSBarry Smith 17057087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 17067087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 17077087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 17087087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 17097087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 17107087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 17117087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1712d382aafbSBarry Smith 17137087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1714d382aafbSBarry Smith 1715d382aafbSBarry Smith /*S 1716d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1717d382aafbSBarry Smith 1718d382aafbSBarry Smith Level: advanced 1719d382aafbSBarry Smith 1720d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1721d382aafbSBarry Smith S*/ 17227087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1723d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 17247087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 17257087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1726fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 17277087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 17287087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1729d382aafbSBarry Smith 1730d382aafbSBarry Smith /* 1731d382aafbSBarry Smith For use in debuggers 1732d382aafbSBarry Smith */ 17337087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 17347087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 17357087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 17367087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 17377087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1738d382aafbSBarry Smith 1739d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1740d382aafbSBarry Smith #include <memory.h> 1741d382aafbSBarry Smith #endif 1742d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1743d382aafbSBarry Smith #include <stdlib.h> 1744d382aafbSBarry Smith #endif 1745d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1746d382aafbSBarry Smith #include <strings.h> 1747d382aafbSBarry Smith #endif 1748d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1749d382aafbSBarry Smith #include <string.h> 1750d382aafbSBarry Smith #endif 17516c7e564aSBarry Smith 17526c7e564aSBarry Smith 17534a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1754d382aafbSBarry Smith #include <xmmintrin.h> 1755d382aafbSBarry Smith #endif 1756d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1757d382aafbSBarry Smith #include <stdint.h> 1758d382aafbSBarry Smith #endif 1759d382aafbSBarry Smith 1760fcfd50ebSBarry Smith #undef __FUNCT__ 1761fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1762d382aafbSBarry Smith /*@C 1763d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1764d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1765d382aafbSBarry Smith PetscMemmove() in that case. 1766d382aafbSBarry Smith 1767d382aafbSBarry Smith Not Collective 1768d382aafbSBarry Smith 1769d382aafbSBarry Smith Input Parameters: 1770d382aafbSBarry Smith + b - pointer to initial memory space 1771d382aafbSBarry Smith - n - length (in bytes) of space to copy 1772d382aafbSBarry Smith 1773d382aafbSBarry Smith Output Parameter: 1774d382aafbSBarry Smith . a - pointer to copy space 1775d382aafbSBarry Smith 1776d382aafbSBarry Smith Level: intermediate 1777d382aafbSBarry Smith 1778d382aafbSBarry Smith Compile Option: 1779d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1780d382aafbSBarry Smith for memory copies on double precision values. 1781d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1782d382aafbSBarry Smith for memory copies on double precision values. 1783d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1784d382aafbSBarry Smith for memory copies on double precision values. 1785d382aafbSBarry Smith 1786d382aafbSBarry Smith Note: 1787d382aafbSBarry Smith This routine is analogous to memcpy(). 1788d382aafbSBarry Smith 1789503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1790503cfb0cSBarry Smith 1791d382aafbSBarry Smith Concepts: memory^copying 1792d382aafbSBarry Smith Concepts: copying^memory 1793d382aafbSBarry Smith 1794d382aafbSBarry Smith .seealso: PetscMemmove() 1795d382aafbSBarry Smith 1796d382aafbSBarry Smith @*/ 17977087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1798d382aafbSBarry Smith { 1799d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1800d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1801d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1802a7e36092SMatthew G Knepley PetscFunctionBegin; 1803e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1804e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1805a7e36092SMatthew G Knepley #else 1806d382aafbSBarry Smith PetscFunctionBegin; 1807a7e36092SMatthew G Knepley #endif 1808d382aafbSBarry Smith if (a != b) { 1809d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1810*e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1811d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1812d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1813d382aafbSBarry Smith #endif 1814d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1815d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1816d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1817d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1818d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1819d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1820d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1821d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1822d382aafbSBarry Smith #else 1823d382aafbSBarry Smith size_t i; 1824d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1825d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1826d382aafbSBarry Smith #endif 1827d382aafbSBarry Smith } else { 1828d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1829d382aafbSBarry Smith } 1830d382aafbSBarry Smith #else 1831d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1832d382aafbSBarry Smith #endif 1833d382aafbSBarry Smith } 1834d382aafbSBarry Smith PetscFunctionReturn(0); 1835d382aafbSBarry Smith } 1836d382aafbSBarry Smith 1837d382aafbSBarry Smith /*@C 1838d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1839d382aafbSBarry Smith 1840d382aafbSBarry Smith Not Collective 1841d382aafbSBarry Smith 1842d382aafbSBarry Smith Input Parameters: 1843d382aafbSBarry Smith + a - pointer to beginning memory location 1844d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1845d382aafbSBarry Smith 1846d382aafbSBarry Smith Level: intermediate 1847d382aafbSBarry Smith 1848d382aafbSBarry Smith Compile Option: 1849d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1850d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1851d382aafbSBarry Smith 1852503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1853503cfb0cSBarry Smith 1854d382aafbSBarry Smith Concepts: memory^zeroing 1855d382aafbSBarry Smith Concepts: zeroing^memory 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith .seealso: PetscMemcpy() 1858d382aafbSBarry Smith @*/ 18597087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1860d382aafbSBarry Smith { 1861d382aafbSBarry Smith if (n > 0) { 1862d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1863e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1864d382aafbSBarry Smith #endif 1865d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1866d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1867d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1868d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1869d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1870d382aafbSBarry Smith } else { 1871d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1872d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1873d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1874d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1875d382aafbSBarry Smith } else { 1876d382aafbSBarry Smith #endif 1877d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1878d382aafbSBarry Smith bzero((char *)a,n); 1879d382aafbSBarry Smith #else 1880d382aafbSBarry Smith memset((char*)a,0,n); 1881d382aafbSBarry Smith #endif 1882d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1883d382aafbSBarry Smith } 1884d382aafbSBarry Smith #endif 1885d382aafbSBarry Smith } 1886d382aafbSBarry Smith return 0; 1887d382aafbSBarry Smith } 1888d382aafbSBarry Smith 1889d382aafbSBarry Smith /*MC 1890d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1891d382aafbSBarry Smith 1892eca87e8dSBarry Smith Synopsis: 1893eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1894eca87e8dSBarry Smith 1895d382aafbSBarry Smith Not Collective 1896d382aafbSBarry Smith 1897d382aafbSBarry Smith Input Parameters: 1898d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1899d382aafbSBarry Smith . n - number of elements to fetch 1900d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 190150d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith Level: developer 1904d382aafbSBarry Smith 1905d382aafbSBarry Smith Notes: 1906d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1907d382aafbSBarry Smith 190850d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 190950d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 191050d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 191163cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 191263cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 191363cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1916d382aafbSBarry Smith address). 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith Concepts: memory 1919d382aafbSBarry Smith M*/ 1920d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1921d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1922d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1923d382aafbSBarry Smith } while (0) 1924d382aafbSBarry Smith 1925d382aafbSBarry Smith /* 1926e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1927d382aafbSBarry Smith */ 1928d382aafbSBarry Smith #include "petscmatlab.h" 1929d382aafbSBarry Smith 1930d382aafbSBarry Smith /* 1931d382aafbSBarry Smith Determine if some of the kernel computation routines use 1932d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1933d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1934d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1935e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1936d382aafbSBarry Smith */ 1937d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1940d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith 19435a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 19445a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1948d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith 1951d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1952d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1953d382aafbSBarry Smith #endif 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1956d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1957d382aafbSBarry Smith #endif 1958d382aafbSBarry Smith 1959d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1960d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1964d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1965d382aafbSBarry Smith #endif 1966d382aafbSBarry Smith 1967d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1968d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1969d382aafbSBarry Smith #endif 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1972d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1973d382aafbSBarry Smith #endif 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1976d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1977d382aafbSBarry Smith #endif 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1980d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1981d382aafbSBarry Smith #endif 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1984d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1985d382aafbSBarry Smith #endif 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1988d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1989d382aafbSBarry Smith #endif 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1992d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1993d382aafbSBarry Smith #endif 1994d382aafbSBarry Smith 1995d382aafbSBarry Smith #endif 1996d382aafbSBarry Smith 1997d382aafbSBarry Smith /* 1998d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1999d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2000d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2001d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2002d382aafbSBarry Smith ugly extern "C" {} wrappers. 2003d382aafbSBarry Smith */ 2004d382aafbSBarry Smith #if defined(__cplusplus) 2005da861ed6SJed Brown #define PETSC_EXTERN_C extern "C" 2006d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2007d382aafbSBarry Smith #define EXTERN_C_END } 2008d382aafbSBarry Smith #else 2009da861ed6SJed Brown #define PETSC_EXTERN_C 2010d382aafbSBarry Smith #define EXTERN_C_BEGIN 2011d382aafbSBarry Smith #define EXTERN_C_END 2012d382aafbSBarry Smith #endif 2013d382aafbSBarry Smith 2014d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith /*MC 2017d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2018d382aafbSBarry Smith communication 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith Level: beginner 2021d382aafbSBarry Smith 2022d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2023d382aafbSBarry Smith 2024d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2025d382aafbSBarry Smith M*/ 2026d382aafbSBarry Smith 2027d382aafbSBarry Smith /*MC 2028d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2029d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2030d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2031d382aafbSBarry Smith 2032d382aafbSBarry Smith 2033d382aafbSBarry Smith Level: beginner 2034d382aafbSBarry Smith 2035d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2036d382aafbSBarry Smith M*/ 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith /*MC 2039d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2040d382aafbSBarry Smith 2041d382aafbSBarry Smith Level: beginner 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2044d382aafbSBarry Smith M*/ 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith /*MC 2047d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2048d382aafbSBarry Smith Level: beginner 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2051d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2054d382aafbSBarry Smith M*/ 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith /*MC 2057d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2058d382aafbSBarry Smith 2059d382aafbSBarry Smith Level: beginner 2060d382aafbSBarry Smith 2061d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2062d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2065d382aafbSBarry Smith M*/ 2066d382aafbSBarry Smith 2067d382aafbSBarry Smith /*MC 2068d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith Level: beginner 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2073d382aafbSBarry Smith pass this value 2074d382aafbSBarry Smith 2075d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2076d382aafbSBarry Smith M*/ 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2079d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2080d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2081d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2082d382aafbSBarry Smith #else 2083d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2084d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2085d382aafbSBarry Smith #endif 2086d382aafbSBarry Smith #endif 2087d382aafbSBarry Smith 2088d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2091d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2092d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2093d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2094d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2095d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2096d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2097d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2098d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2099d382aafbSBarry Smith 2100d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2101e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2102e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2103eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2104eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2107e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2108eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2109d382aafbSBarry Smith #else 2110d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2111d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith #else 2115d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2116d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2117d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2118d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2119d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2120d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2121d382aafbSBarry Smith #endif 2122d382aafbSBarry Smith 2123d382aafbSBarry Smith 2124d382aafbSBarry Smith /* 2125d382aafbSBarry Smith The IBM include files define hz, here we hide it so that it may be used 2126d382aafbSBarry Smith as a regular user variable. 2127d382aafbSBarry Smith */ 2128d382aafbSBarry Smith #if defined(hz) 2129d382aafbSBarry Smith #undef hz 2130d382aafbSBarry Smith #endif 2131d382aafbSBarry Smith 2132d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2133d382aafbSBarry Smith 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2136d382aafbSBarry Smith #include <limits.h> 2137d382aafbSBarry Smith #endif 2138d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2139d382aafbSBarry Smith #include <sys/param.h> 2140d382aafbSBarry Smith #endif 2141d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2142d382aafbSBarry Smith #include <sys/types.h> 2143d382aafbSBarry Smith #endif 2144d382aafbSBarry Smith #if defined(MAXPATHLEN) 2145d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2146d382aafbSBarry Smith #elif defined(MAX_PATH) 2147d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2148d382aafbSBarry Smith #elif defined(_MAX_PATH) 2149d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2150d382aafbSBarry Smith #else 2151d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2152d382aafbSBarry Smith #endif 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith /* Special support for C++ */ 2155d382aafbSBarry Smith #include "petscsys.hh" 21566c7e564aSBarry Smith 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith /*MC 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith $ 1) classic Fortran 77 style 2163d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2164d382aafbSBarry Smith $ XXX variablename 2165d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2166d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2167d382aafbSBarry Smith $ 2168d382aafbSBarry Smith $ 2) classic Fortran 90 style 2169d1716517SSatish Balay $#include "finclude/petscXXX.h" 2170d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2171d382aafbSBarry Smith $ XXX variablename 2172d382aafbSBarry Smith $ 2173d382aafbSBarry Smith $ 3) Using Fortran modules 2174d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2175d382aafbSBarry Smith $ use petscXXXX 2176d382aafbSBarry Smith $ XXX variablename 2177d382aafbSBarry Smith $ 2178d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2179d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2180d382aafbSBarry Smith $ use petscXXXX 2181d382aafbSBarry Smith $ type(XXX) variablename 2182e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2183d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2186d382aafbSBarry Smith 2187d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2188d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2189d382aafbSBarry Smith $ integer variablename 2190d382aafbSBarry Smith $ 2191d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2192d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2193d382aafbSBarry Smith 2194d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2195d382aafbSBarry Smith for only a few PETSc functions. 2196d382aafbSBarry Smith 2197d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2198d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2199d382aafbSBarry Smith you cannot have something like 2200d382aafbSBarry Smith $ PetscInt row,col 2201d382aafbSBarry Smith $ PetscScalar val 2202d382aafbSBarry Smith $ ... 2203d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2204d382aafbSBarry Smith You must instead have 2205d382aafbSBarry Smith $ PetscInt row(1),col(1) 2206d382aafbSBarry Smith $ PetscScalar val(1) 2207d382aafbSBarry Smith $ ... 2208d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2209d382aafbSBarry Smith 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2212d382aafbSBarry Smith 2213d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2214d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2215d382aafbSBarry Smith 2216d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2217d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2218d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2219d382aafbSBarry Smith 2220d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2221e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2222d382aafbSBarry Smith 2223d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2224d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2225d382aafbSBarry Smith 2226d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2227d382aafbSBarry Smith automatically by "make allfortranstubs". 2228d382aafbSBarry Smith 2229e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2230d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2231d382aafbSBarry Smith include their predecessors 2232d382aafbSBarry Smith 2233d382aafbSBarry Smith Level: beginner 2234d382aafbSBarry Smith 2235d382aafbSBarry Smith M*/ 2236d382aafbSBarry Smith 22377087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 22387087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 22397087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 22407087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 22417087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 22427087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2243d382aafbSBarry Smith 22447087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 22457087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 22467087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 22477087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 22487087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2249d7aa01a8SHong Zhang extern PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 22507087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 22517087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 22527087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 22537087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 22547087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 22557087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 22567087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 22579b67c4b3SDmitry Karpeev extern PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2258d382aafbSBarry Smith 22597087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 22607087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2261d382aafbSBarry Smith 226276bdecfbSBarry Smith /*J 2263d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2264d382aafbSBarry Smith with an optional dynamic library name, for example 2265d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2266d382aafbSBarry Smith 2267d382aafbSBarry Smith Level: beginner 2268d382aafbSBarry Smith 2269e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2270d382aafbSBarry Smith with the option --download-sprng 2271d382aafbSBarry Smith 2272d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 227376bdecfbSBarry Smith J*/ 2274d382aafbSBarry Smith #define PetscRandomType char* 2275d382aafbSBarry Smith #define PETSCRAND "rand" 2276d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2277d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2278d382aafbSBarry Smith 2279d382aafbSBarry Smith /* Logging support */ 22807087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2281d382aafbSBarry Smith 22827087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2283d382aafbSBarry Smith 2284d382aafbSBarry Smith /*S 2285d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2286d382aafbSBarry Smith 2287d382aafbSBarry Smith Level: intermediate 2288d382aafbSBarry Smith 2289d382aafbSBarry Smith Concepts: random numbers 2290d382aafbSBarry Smith 2291d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2292d382aafbSBarry Smith S*/ 2293d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2294d382aafbSBarry Smith 2295d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2296d382aafbSBarry Smith extern PetscFList PetscRandomList; 2297ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2298d382aafbSBarry Smith 22997087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 23007087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 23017087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 23027087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 23037087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 23047087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 23057087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 23067087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2307d382aafbSBarry Smith 2308d382aafbSBarry Smith /*MC 2309d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2310d382aafbSBarry Smith 2311d382aafbSBarry Smith Synopsis: 23121890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2313d382aafbSBarry Smith 2314d382aafbSBarry Smith Not Collective 2315d382aafbSBarry Smith 2316d382aafbSBarry Smith Input Parameters: 2317d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2318d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2319d382aafbSBarry Smith . func_name - The name of routine to create method context 2320d382aafbSBarry Smith - create_func - The creation routine itself 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith Notes: 2323d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2324d382aafbSBarry Smith 2325d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2326d382aafbSBarry Smith 2327d382aafbSBarry Smith Sample usage: 2328d382aafbSBarry Smith .vb 2329d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2330d382aafbSBarry Smith .ve 2331d382aafbSBarry Smith 2332d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2333d382aafbSBarry Smith .vb 2334d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2335d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2336d382aafbSBarry Smith .ve 2337d382aafbSBarry Smith or at runtime via the option 2338d382aafbSBarry Smith .vb 2339d382aafbSBarry Smith -random_type my_random_name 2340d382aafbSBarry Smith .ve 2341d382aafbSBarry Smith 2342d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2343d382aafbSBarry Smith 2344d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2345d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2346d382aafbSBarry Smith 2347d382aafbSBarry Smith Level: advanced 2348d382aafbSBarry Smith 2349d382aafbSBarry Smith .keywords: PetscRandom, register 2350d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2351d382aafbSBarry Smith M*/ 2352d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2353d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2354d382aafbSBarry Smith #else 2355d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2356d382aafbSBarry Smith #endif 2357d382aafbSBarry Smith 23587087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 23597087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 23607087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 23617087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 23627087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 23637087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 23647087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 23657087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2366fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2367d382aafbSBarry Smith 23687087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 23697087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 23707087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 23717087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 23727087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 23737087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 23747087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2375d382aafbSBarry Smith 23767087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 23777087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 23787087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 23797087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 23807087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 23817087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 23827087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 23837087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23847087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23857087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23867087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23877087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23887087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2389d382aafbSBarry Smith 2390d382aafbSBarry Smith /* 2391d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2392d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2393d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2394d382aafbSBarry Smith PetscBinarySeek(). 2395d382aafbSBarry Smith */ 2396d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2397d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2398d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2399d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2400d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2401d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2402d382aafbSBarry Smith 2403d382aafbSBarry Smith /*E 2404d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2405d382aafbSBarry Smith 2406d382aafbSBarry Smith Level: advanced 2407d382aafbSBarry Smith 2408d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2409d382aafbSBarry Smith E*/ 2410d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 24117087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 24127087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 241346090da6SBarry Smith extern PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2414d382aafbSBarry Smith 24157087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 24167087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 24177087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 24187c764164SBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(const char*); 24197087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 24207087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2421d382aafbSBarry Smith 24227087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 24237087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 24247087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 24257087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 24267087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2427d382aafbSBarry Smith 24287087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2429d382aafbSBarry Smith 2430d382aafbSBarry Smith /*E 2431d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2432d382aafbSBarry Smith 2433d382aafbSBarry Smith Level: beginner 2434d382aafbSBarry Smith 2435d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2436d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2437d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2438d382aafbSBarry Smith E*/ 243911f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2440d382aafbSBarry Smith 2441d382aafbSBarry Smith /*MC 2442d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2443d382aafbSBarry Smith 2444d382aafbSBarry Smith Level: beginner 2445d382aafbSBarry Smith 2446d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2447eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2448eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2449d382aafbSBarry Smith 2450d382aafbSBarry Smith M*/ 2451d382aafbSBarry Smith 2452d382aafbSBarry Smith /*MC 2453d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2454d382aafbSBarry Smith value into that location 2455d382aafbSBarry Smith 2456d382aafbSBarry Smith Level: beginner 2457d382aafbSBarry Smith 2458d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2459eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2460eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2461d382aafbSBarry Smith 2462d382aafbSBarry Smith M*/ 2463d382aafbSBarry Smith 2464d382aafbSBarry Smith /*MC 2465d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2466d382aafbSBarry Smith 2467d382aafbSBarry Smith Level: beginner 2468d382aafbSBarry Smith 2469d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2470d382aafbSBarry Smith 2471d382aafbSBarry Smith M*/ 2472d382aafbSBarry Smith 2473d382aafbSBarry Smith /*S 2474d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2475d382aafbSBarry Smith 2476d382aafbSBarry Smith Level: advanced 2477d382aafbSBarry Smith 2478d382aafbSBarry Smith Concepts: communicator, create 2479d382aafbSBarry Smith S*/ 2480d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2481d382aafbSBarry Smith 2482d382aafbSBarry Smith struct _n_PetscSubcomm { 2483d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2484d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2485d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2486d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2487d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2488d382aafbSBarry Smith }; 2489d382aafbSBarry Smith 2490638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2491638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2492638faf0bSHong Zhang 24937087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2494fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24957087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24967c764164SBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 24977087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2498d382aafbSBarry Smith 249982a7e548SBarry Smith #include <petscctable.h> 250082a7e548SBarry Smith 2501d382aafbSBarry Smith PETSC_EXTERN_CXX_END 25026c7e564aSBarry Smith 25039e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 25049e03d832SJed Brown #undef __FUNCT__ 25059e03d832SJed Brown #define __FUNCT__ "User provided function" 25069e03d832SJed Brown 2507d382aafbSBarry Smith #endif 2508