1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352981ebdbSBarry Smith This facilitates using the C version of PETSc from C++ and the 36e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 37d382aafbSBarry Smith */ 38d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 39d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 40d382aafbSBarry Smith #endif 411ec50b02SJed Brown 421ec50b02SJed Brown #if defined(__cplusplus) 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 441ec50b02SJed Brown #else 451ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 461ec50b02SJed Brown #endif 47d382aafbSBarry Smith 48ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 49014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 50014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 51014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 52014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 53014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 54d382aafbSBarry Smith #else 55014dd563SJed Brown # define PETSC_DLLEXPORT 56014dd563SJed Brown # define PETSC_DLLIMPORT 57014dd563SJed Brown #endif 58014dd563SJed Brown 59014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 60014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 61014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 62014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 63014dd563SJed Brown #endif 64014dd563SJed Brown 65014dd563SJed Brown #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 66014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 67638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 68014dd563SJed Brown #else 69014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 70638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 71d382aafbSBarry Smith #endif 7227710113SBarry Smith 732c8e378dSBarry Smith #include <petscversion.h> 74301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 75d382aafbSBarry Smith 76d382aafbSBarry Smith /* ========================================================================== */ 77d382aafbSBarry Smith 78d382aafbSBarry Smith /* 79d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 80d382aafbSBarry Smith 81d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 82d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 83d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 84d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 85d382aafbSBarry Smith mpicxx.h directly in their code 86d382aafbSBarry Smith */ 87d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 88d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 892c8e378dSBarry Smith #include <mpi.h> 9065013866SBarry Smith 91d382aafbSBarry Smith /* 922981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 93d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 94d382aafbSBarry Smith */ 95d382aafbSBarry Smith #include <stdio.h> 96d382aafbSBarry Smith 97d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 98d382aafbSBarry Smith #if !defined(MPIAPI) 99d382aafbSBarry Smith #define MPIAPI 100d382aafbSBarry Smith #endif 101d382aafbSBarry Smith 102b3506946SBarry Smith 103d382aafbSBarry Smith /*MC 104d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 105d382aafbSBarry Smith 106d382aafbSBarry Smith Level: beginner 107d382aafbSBarry Smith 108d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 109d382aafbSBarry Smith M*/ 110d382aafbSBarry Smith typedef int PetscErrorCode; 111d382aafbSBarry Smith 112d382aafbSBarry Smith /*MC 113d382aafbSBarry Smith 114503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 115d382aafbSBarry Smith (internal integer in the data structure used for error 1162981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1170700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 118d382aafbSBarry Smith 119d382aafbSBarry Smith Level: advanced 120d382aafbSBarry Smith 1210700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 122d382aafbSBarry Smith M*/ 1230700a824SBarry Smith typedef int PetscClassId; 124d382aafbSBarry Smith 125d382aafbSBarry Smith 126d382aafbSBarry Smith /*MC 127d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 128d382aafbSBarry Smith 129d382aafbSBarry Smith Level: intermediate 130d382aafbSBarry Smith 131d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1323b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 133d382aafbSBarry Smith 1343b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 1352981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 136d382aafbSBarry Smith 1373b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1382981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 139d382aafbSBarry Smith 140d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 141d382aafbSBarry Smith 142d382aafbSBarry Smith M*/ 143d382aafbSBarry Smith typedef int PetscMPIInt; 144d382aafbSBarry Smith 145d382aafbSBarry Smith /*MC 146d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 147d382aafbSBarry Smith 148d382aafbSBarry Smith Level: intermediate 149d382aafbSBarry Smith 150d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 151d382aafbSBarry Smith M*/ 152d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 153d382aafbSBarry Smith 154d382aafbSBarry Smith /*MC 155d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1563b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 157d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 158d382aafbSBarry Smith 159d382aafbSBarry Smith Level: intermediate 160d382aafbSBarry Smith 161d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 162d382aafbSBarry Smith M*/ 163f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 164f505b413SSatish Balay typedef long long Petsc64bitInt; 165f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 166236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 167236ed0a3SSatish Balay #else 168f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 169236ed0a3SSatish Balay #endif 170d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 171236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 172d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 173d382aafbSBarry Smith #else 174d382aafbSBarry Smith typedef int PetscInt; 175d382aafbSBarry Smith #define MPIU_INT MPI_INT 176d382aafbSBarry Smith #endif 177236ed0a3SSatish Balay 178d382aafbSBarry Smith 179702bc34aSSatish Balay /*MC 180702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 181702bc34aSSatish Balay 182702bc34aSSatish Balay Level: intermediate 183702bc34aSSatish Balay 184702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 185702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 186702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 187702bc34aSSatish Balay 188702bc34aSSatish Balay PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 1892981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 190702bc34aSSatish Balay 191702bc34aSSatish Balay PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 1922981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 193702bc34aSSatish Balay 1942981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 195702bc34aSSatish Balay if you run ./configure with the option 196702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 1972981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 1982981ebdbSBarry Smith 1992981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2002981ebdbSBarry Smith 2012981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 202702bc34aSSatish Balay 203702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 204702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 205702bc34aSSatish Balay 206702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 207702bc34aSSatish Balay 208702bc34aSSatish Balay M*/ 209702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 210702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 211702bc34aSSatish Balay #else 212702bc34aSSatish Balay typedef int PetscBLASInt; 213702bc34aSSatish Balay #endif 214702bc34aSSatish Balay 21558b60935SBarry Smith /*EC 21658b60935SBarry Smith 2172981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 21858b60935SBarry Smith 21958b60935SBarry Smith Level: advanced 22058b60935SBarry Smith 22158b60935SBarry Smith .seealso: PetscObjectSetPrecision() 22258b60935SBarry Smith E*/ 22358b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 224014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 22558b60935SBarry Smith 226503cfb0cSBarry Smith /* 227503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 228503cfb0cSBarry Smith */ 229d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 230d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 231d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 232d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 233d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 234d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 235d382aafbSBarry Smith #else 236d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 237d382aafbSBarry Smith #endif 238d382aafbSBarry Smith 239d382aafbSBarry Smith 240d382aafbSBarry Smith /* 241d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 242d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 243d382aafbSBarry Smith */ 244014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 245d382aafbSBarry Smith 246d382aafbSBarry Smith /* 247d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 248d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 249d382aafbSBarry Smith */ 250014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 251d382aafbSBarry Smith 252d382aafbSBarry Smith /*MC 253d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 254d382aafbSBarry Smith 255d382aafbSBarry Smith Synopsis: 256ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 257d382aafbSBarry Smith 258eca87e8dSBarry Smith Not Collective 259eca87e8dSBarry Smith 260d382aafbSBarry Smith Input Parameters: 261d382aafbSBarry Smith . cond - condition or expression 262d382aafbSBarry Smith 263d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 264d382aafbSBarry Smith branch is unlikely. 265d382aafbSBarry Smith 266d382aafbSBarry Smith Level: advanced 267d382aafbSBarry Smith 268d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 269d382aafbSBarry Smith M*/ 270d382aafbSBarry Smith 271d382aafbSBarry Smith /*MC 272d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 273d382aafbSBarry Smith 274d382aafbSBarry Smith Synopsis: 275ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 276d382aafbSBarry Smith 277eca87e8dSBarry Smith Not Collective 278eca87e8dSBarry Smith 279d382aafbSBarry Smith Input Parameters: 280d382aafbSBarry Smith . cond - condition or expression 281d382aafbSBarry Smith 282d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 283d382aafbSBarry Smith branch is likely. 284d382aafbSBarry Smith 285d382aafbSBarry Smith Level: advanced 286d382aafbSBarry Smith 287d382aafbSBarry Smith .seealso: PetscUnlikely() 288d382aafbSBarry Smith M*/ 289d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 290d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 291d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 292d382aafbSBarry Smith #else 293cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 294cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 295d382aafbSBarry Smith #endif 296d382aafbSBarry Smith 297d382aafbSBarry Smith /* 298d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 299d382aafbSBarry Smith */ 3002c8e378dSBarry Smith #include <petscmath.h> 301d382aafbSBarry Smith 302d382aafbSBarry Smith /* 303d382aafbSBarry Smith Declare extern C stuff after including external header files 304d382aafbSBarry Smith */ 305d382aafbSBarry Smith 306d382aafbSBarry Smith 307d382aafbSBarry Smith /* 308d382aafbSBarry Smith Basic PETSc constants 309d382aafbSBarry Smith */ 310d382aafbSBarry Smith 311d382aafbSBarry Smith /*E 312ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 313d382aafbSBarry Smith 314d382aafbSBarry Smith Level: beginner 315d382aafbSBarry Smith 316ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 31734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 31834e82e7dSBarry Smith 319d382aafbSBarry Smith E*/ 320ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3216a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 32270b3c8c7SBarry Smith 32370b3c8c7SBarry Smith /*E 32470b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 32570b3c8c7SBarry Smith 32670b3c8c7SBarry Smith Level: beginner 32770b3c8c7SBarry Smith 32870b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 32970b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 33070b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 33170b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 33270b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 33370b3c8c7SBarry Smith 33470b3c8c7SBarry Smith E*/ 33570b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3366a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 337d382aafbSBarry Smith 338d382aafbSBarry Smith /*MC 339ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 340d382aafbSBarry Smith 341d382aafbSBarry Smith Level: beginner 342d382aafbSBarry Smith 343d382aafbSBarry Smith Note: Zero integer 344d382aafbSBarry Smith 345ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 346d382aafbSBarry Smith M*/ 347d382aafbSBarry Smith 348d382aafbSBarry Smith /*MC 349ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 350d382aafbSBarry Smith 351d382aafbSBarry Smith Level: beginner 352d382aafbSBarry Smith 353d382aafbSBarry Smith Note: Nonzero integer 354d382aafbSBarry Smith 355ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 356d382aafbSBarry Smith M*/ 357d382aafbSBarry Smith 358d382aafbSBarry Smith /*MC 359d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 360d382aafbSBarry Smith 361d382aafbSBarry Smith Level: beginner 362d382aafbSBarry Smith 363d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 364d382aafbSBarry Smith some default 365d382aafbSBarry Smith 366d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 367503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 368d382aafbSBarry Smith 36934e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 37034e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 37134e82e7dSBarry Smith 372d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 373d382aafbSBarry Smith 374d382aafbSBarry Smith M*/ 375d382aafbSBarry Smith #define PETSC_NULL 0 376d382aafbSBarry Smith 377d382aafbSBarry Smith /*MC 378d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 379d382aafbSBarry Smith 380d382aafbSBarry Smith Level: beginner 381d382aafbSBarry Smith 382d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 383d382aafbSBarry Smith some default 384d382aafbSBarry Smith 385d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 386d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 387d382aafbSBarry Smith 388d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 389d382aafbSBarry Smith 390d382aafbSBarry Smith M*/ 391d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 392d382aafbSBarry Smith 393d382aafbSBarry Smith /*MC 394557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 395557d4da8SBarry Smith where you wish PETSc to use the default. 396557d4da8SBarry Smith 397557d4da8SBarry Smith Level: beginner 398557d4da8SBarry Smith 399557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 400557d4da8SBarry Smith 401557d4da8SBarry Smith M*/ 402557d4da8SBarry Smith #define PETSC_DECIDE -1 403557d4da8SBarry Smith 404557d4da8SBarry Smith /*MC 405d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 406d382aafbSBarry Smith where you wish PETSc to compute the required value. 407d382aafbSBarry Smith 408d382aafbSBarry Smith Level: beginner 409d382aafbSBarry Smith 410557d4da8SBarry Smith 411557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 412557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 413557d4da8SBarry Smith 414d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 415d382aafbSBarry Smith 416d382aafbSBarry Smith M*/ 417d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 418d382aafbSBarry Smith 419d382aafbSBarry Smith /*MC 420557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 421557d4da8SBarry Smith where you wish PETSc to use the default. 422557d4da8SBarry Smith 423557d4da8SBarry Smith Level: beginner 424557d4da8SBarry Smith 425557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 426557d4da8SBarry Smith 427557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 428557d4da8SBarry Smith 429557d4da8SBarry Smith M*/ 430557d4da8SBarry Smith #define PETSC_DEFAULT -2 431557d4da8SBarry Smith 432557d4da8SBarry Smith /*MC 433d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 434d382aafbSBarry Smith all the processs that PETSc knows about. 435d382aafbSBarry Smith 436d382aafbSBarry Smith Level: beginner 437d382aafbSBarry Smith 438d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 439d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 440d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 441d382aafbSBarry Smith PetscInitialize() 442d382aafbSBarry Smith 443d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 444d382aafbSBarry Smith 445d382aafbSBarry Smith M*/ 446014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 447d382aafbSBarry Smith 448d382aafbSBarry Smith /*MC 449503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 450d382aafbSBarry Smith 451d382aafbSBarry Smith Level: beginner 452d382aafbSBarry Smith 453d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 454d382aafbSBarry Smith 455d382aafbSBarry Smith M*/ 456d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 457d382aafbSBarry Smith 458014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 459014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 460014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 461d382aafbSBarry Smith 462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 465d382aafbSBarry Smith 466d382aafbSBarry Smith /*MC 467d382aafbSBarry Smith PetscMalloc - Allocates memory 468d382aafbSBarry Smith 469eca87e8dSBarry Smith Synopsis: 470eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 471eca87e8dSBarry Smith 472eca87e8dSBarry Smith Not Collective 473eca87e8dSBarry Smith 474d382aafbSBarry Smith Input Parameter: 475d382aafbSBarry Smith . m - number of bytes to allocate 476d382aafbSBarry Smith 477d382aafbSBarry Smith Output Parameter: 478d382aafbSBarry Smith . result - memory allocated 479d382aafbSBarry Smith 480d382aafbSBarry Smith Level: beginner 481d382aafbSBarry Smith 482d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 483d382aafbSBarry Smith 484d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 485d382aafbSBarry Smith properly handle not freeing the null pointer. 486d382aafbSBarry Smith 487d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 488d382aafbSBarry Smith 489d382aafbSBarry Smith Concepts: memory allocation 490d382aafbSBarry Smith 491d382aafbSBarry Smith M*/ 4922714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 493d382aafbSBarry Smith 494d382aafbSBarry Smith /*MC 495503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 496d382aafbSBarry Smith 497d382aafbSBarry Smith Synopsis: 498d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 499d382aafbSBarry Smith 500eca87e8dSBarry Smith Not Collective 501eca87e8dSBarry Smith 502eca87e8dSBarry Smith Input Parameters: 503eca87e8dSBarry Smith . addr - address to align (any pointer type) 504eca87e8dSBarry Smith 505d382aafbSBarry Smith Level: developer 506d382aafbSBarry Smith 507d382aafbSBarry Smith .seealso: PetscMallocAlign() 508d382aafbSBarry Smith 509d382aafbSBarry Smith Concepts: memory allocation 510d382aafbSBarry Smith M*/ 511d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 512d382aafbSBarry Smith 513d382aafbSBarry Smith /*MC 514503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 515d382aafbSBarry Smith 516eca87e8dSBarry Smith Synopsis: 517eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 518eca87e8dSBarry Smith 519eca87e8dSBarry Smith Not Collective 520eca87e8dSBarry Smith 521d382aafbSBarry Smith Input Parameter: 522d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 523d382aafbSBarry Smith . t1 - type of first memory elements 524d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 525d382aafbSBarry Smith - t2 - type of second memory elements 526d382aafbSBarry Smith 527d382aafbSBarry Smith Output Parameter: 528d382aafbSBarry Smith + r1 - memory allocated in first chunk 529d382aafbSBarry Smith - r2 - memory allocated in second chunk 530d382aafbSBarry Smith 531d382aafbSBarry Smith Level: developer 532d382aafbSBarry Smith 533d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 534d382aafbSBarry Smith 535d382aafbSBarry Smith Concepts: memory allocation 536d382aafbSBarry Smith 537d382aafbSBarry Smith M*/ 538d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 539d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 540d382aafbSBarry Smith #else 5412981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 542d382aafbSBarry Smith #endif 543d382aafbSBarry Smith 544d382aafbSBarry Smith /*MC 545503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 546d382aafbSBarry Smith 547eca87e8dSBarry Smith Synopsis: 548eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 549eca87e8dSBarry Smith 550eca87e8dSBarry Smith Not Collective 551eca87e8dSBarry Smith 552d382aafbSBarry Smith Input Parameter: 553d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 554d382aafbSBarry Smith . t1 - type of first memory elements 555d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 556d382aafbSBarry Smith . t2 - type of second memory elements 557d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 558d382aafbSBarry Smith - t3 - type of third memory elements 559d382aafbSBarry Smith 560d382aafbSBarry Smith Output Parameter: 561d382aafbSBarry Smith + r1 - memory allocated in first chunk 562d382aafbSBarry Smith . r2 - memory allocated in second chunk 563d382aafbSBarry Smith - r3 - memory allocated in third chunk 564d382aafbSBarry Smith 565d382aafbSBarry Smith Level: developer 566d382aafbSBarry Smith 567d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 568d382aafbSBarry Smith 569d382aafbSBarry Smith Concepts: memory allocation 570d382aafbSBarry Smith 571d382aafbSBarry Smith M*/ 572d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 573d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 574d382aafbSBarry Smith #else 5753b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 576d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 577d382aafbSBarry Smith #endif 578d382aafbSBarry Smith 579d382aafbSBarry Smith /*MC 580503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 581d382aafbSBarry Smith 582eca87e8dSBarry Smith Synopsis: 583eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 584eca87e8dSBarry Smith 585eca87e8dSBarry Smith Not Collective 586eca87e8dSBarry Smith 587d382aafbSBarry Smith Input Parameter: 588d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 589d382aafbSBarry Smith . t1 - type of first memory elements 590d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 591d382aafbSBarry Smith . t2 - type of second memory elements 592d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 593d382aafbSBarry Smith . t3 - type of third memory elements 594d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 595d382aafbSBarry Smith - t4 - type of fourth memory elements 596d382aafbSBarry Smith 597d382aafbSBarry Smith Output Parameter: 598d382aafbSBarry Smith + r1 - memory allocated in first chunk 599d382aafbSBarry Smith . r2 - memory allocated in second chunk 600d382aafbSBarry Smith . r3 - memory allocated in third chunk 601d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 602d382aafbSBarry Smith 603d382aafbSBarry Smith Level: developer 604d382aafbSBarry Smith 605d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 606d382aafbSBarry Smith 607d382aafbSBarry Smith Concepts: memory allocation 608d382aafbSBarry Smith 609d382aafbSBarry Smith M*/ 610d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 611d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 612d382aafbSBarry Smith #else 613d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6143b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 615d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 616d382aafbSBarry Smith #endif 617d382aafbSBarry Smith 618d382aafbSBarry Smith /*MC 619503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 620d382aafbSBarry Smith 621eca87e8dSBarry Smith Synopsis: 622eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 623eca87e8dSBarry Smith 624eca87e8dSBarry Smith Not Collective 625eca87e8dSBarry Smith 626d382aafbSBarry Smith Input Parameter: 627d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 628d382aafbSBarry Smith . t1 - type of first memory elements 629d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 630d382aafbSBarry Smith . t2 - type of second memory elements 631d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 632d382aafbSBarry Smith . t3 - type of third memory elements 633d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 634d382aafbSBarry Smith . t4 - type of fourth memory elements 635d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 636d382aafbSBarry Smith - t5 - type of fifth memory elements 637d382aafbSBarry Smith 638d382aafbSBarry Smith Output Parameter: 639d382aafbSBarry Smith + r1 - memory allocated in first chunk 640d382aafbSBarry Smith . r2 - memory allocated in second chunk 641d382aafbSBarry Smith . r3 - memory allocated in third chunk 642d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 643d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 644d382aafbSBarry Smith 645d382aafbSBarry Smith Level: developer 646d382aafbSBarry Smith 647d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 648d382aafbSBarry Smith 649d382aafbSBarry Smith Concepts: memory allocation 650d382aafbSBarry Smith 651d382aafbSBarry Smith M*/ 652d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 653d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 654d382aafbSBarry Smith #else 655d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 6563b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 657d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 658d382aafbSBarry Smith #endif 659d382aafbSBarry Smith 660d382aafbSBarry Smith 661d382aafbSBarry Smith /*MC 662503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 663d382aafbSBarry Smith 664eca87e8dSBarry Smith Synopsis: 665eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 666eca87e8dSBarry Smith 667eca87e8dSBarry Smith Not Collective 668eca87e8dSBarry Smith 669d382aafbSBarry Smith Input Parameter: 670d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 671d382aafbSBarry Smith . t1 - type of first memory elements 672d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 673d382aafbSBarry Smith . t2 - type of second memory elements 674d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 675d382aafbSBarry Smith . t3 - type of third memory elements 676d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 677d382aafbSBarry Smith . t4 - type of fourth memory elements 678d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 679d382aafbSBarry Smith . t5 - type of fifth memory elements 680d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 681d382aafbSBarry Smith - t6 - type of sixth memory elements 682d382aafbSBarry Smith 683d382aafbSBarry Smith Output Parameter: 684d382aafbSBarry Smith + r1 - memory allocated in first chunk 685d382aafbSBarry Smith . r2 - memory allocated in second chunk 686d382aafbSBarry Smith . r3 - memory allocated in third chunk 687d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 688d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 689d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 690d382aafbSBarry Smith 691d382aafbSBarry Smith Level: developer 692d382aafbSBarry Smith 693d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 694d382aafbSBarry Smith 695d382aafbSBarry Smith Concepts: memory allocation 696d382aafbSBarry Smith 697d382aafbSBarry Smith M*/ 698d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 699d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 700d382aafbSBarry Smith #else 701d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7023b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 703d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 704d382aafbSBarry Smith #endif 705d382aafbSBarry Smith 706d382aafbSBarry Smith /*MC 707503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 708d382aafbSBarry Smith 709eca87e8dSBarry Smith Synopsis: 710eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 711eca87e8dSBarry Smith 712eca87e8dSBarry Smith Not Collective 713eca87e8dSBarry Smith 714d382aafbSBarry Smith Input Parameter: 715d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 716d382aafbSBarry Smith . t1 - type of first memory elements 717d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 718d382aafbSBarry Smith . t2 - type of second memory elements 719d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 720d382aafbSBarry Smith . t3 - type of third memory elements 721d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 722d382aafbSBarry Smith . t4 - type of fourth memory elements 723d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 724d382aafbSBarry Smith . t5 - type of fifth memory elements 725d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 726d382aafbSBarry Smith . t6 - type of sixth memory elements 727d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 728d382aafbSBarry Smith - t7 - type of sixth memory elements 729d382aafbSBarry Smith 730d382aafbSBarry Smith Output Parameter: 731d382aafbSBarry Smith + r1 - memory allocated in first chunk 732d382aafbSBarry Smith . r2 - memory allocated in second chunk 733d382aafbSBarry Smith . r3 - memory allocated in third chunk 734d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 735d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 736d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 737eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 738d382aafbSBarry Smith 739d382aafbSBarry Smith Level: developer 740d382aafbSBarry Smith 741d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 742d382aafbSBarry Smith 743d382aafbSBarry Smith Concepts: memory allocation 744d382aafbSBarry Smith 745d382aafbSBarry Smith M*/ 746d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 747d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 748d382aafbSBarry Smith #else 749d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 7503b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 751d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 752d382aafbSBarry Smith #endif 753d382aafbSBarry Smith 754d382aafbSBarry Smith /*MC 755503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 756d382aafbSBarry Smith 757eca87e8dSBarry Smith Synopsis: 758eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 759eca87e8dSBarry Smith 760eca87e8dSBarry Smith Not Collective 761eca87e8dSBarry Smith 762d382aafbSBarry Smith Input Parameter: 763d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 764d382aafbSBarry Smith 765d382aafbSBarry Smith Output Parameter: 766d382aafbSBarry Smith . result - memory allocated 767d382aafbSBarry Smith 768d382aafbSBarry Smith Level: beginner 769d382aafbSBarry Smith 770ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 771d382aafbSBarry Smith 772d382aafbSBarry Smith Concepts: memory allocation 773d382aafbSBarry Smith 774d382aafbSBarry Smith M*/ 775d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 776ad0619ddSBarry Smith 777ad0619ddSBarry Smith /*MC 778ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 779ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 780ad0619ddSBarry Smith 781ad0619ddSBarry Smith Synopsis: 782ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 783ad0619ddSBarry Smith 784ad0619ddSBarry Smith Not Collective 785ad0619ddSBarry Smith 786ad0619ddSBarry Smith Input Parameter: 787ad0619ddSBarry Smith + obj - object memory is logged to 788ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 789ad0619ddSBarry Smith 790ad0619ddSBarry Smith Output Parameter: 791ad0619ddSBarry Smith . result - memory allocated 792ad0619ddSBarry Smith 793ad0619ddSBarry Smith Level: developer 794ad0619ddSBarry Smith 795ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 796ad0619ddSBarry Smith 797ad0619ddSBarry Smith Concepts: memory allocation 798ad0619ddSBarry Smith 799ad0619ddSBarry Smith M*/ 800d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 801d382aafbSBarry Smith 802d382aafbSBarry Smith /*MC 803d382aafbSBarry Smith PetscFree - Frees memory 804d382aafbSBarry Smith 805eca87e8dSBarry Smith Synopsis: 806eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 807eca87e8dSBarry Smith 808eca87e8dSBarry Smith Not Collective 809eca87e8dSBarry Smith 810d382aafbSBarry Smith Input Parameter: 811d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 812d382aafbSBarry Smith 813d382aafbSBarry Smith Level: beginner 814d382aafbSBarry Smith 815d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 816d382aafbSBarry Smith 817d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 818d382aafbSBarry Smith 819d382aafbSBarry Smith Concepts: memory allocation 820d382aafbSBarry Smith 821d382aafbSBarry Smith M*/ 82212537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 823d382aafbSBarry Smith 824d382aafbSBarry Smith /*MC 825d382aafbSBarry Smith PetscFreeVoid - Frees memory 826d382aafbSBarry Smith 827d382aafbSBarry Smith Synopsis: 828d382aafbSBarry Smith void PetscFreeVoid(void *memory) 829d382aafbSBarry Smith 830eca87e8dSBarry Smith Not Collective 831eca87e8dSBarry Smith 832eca87e8dSBarry Smith Input Parameter: 833eca87e8dSBarry Smith . memory - memory to free 834eca87e8dSBarry Smith 835d382aafbSBarry Smith Level: beginner 836d382aafbSBarry Smith 837d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 838d382aafbSBarry Smith 839d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 840d382aafbSBarry Smith 841d382aafbSBarry Smith Concepts: memory allocation 842d382aafbSBarry Smith 843d382aafbSBarry Smith M*/ 8442714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 845d382aafbSBarry Smith 846d382aafbSBarry Smith 847d382aafbSBarry Smith /*MC 848d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 849d382aafbSBarry Smith 850eca87e8dSBarry Smith Synopsis: 851eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 852eca87e8dSBarry Smith 853eca87e8dSBarry Smith Not Collective 854eca87e8dSBarry Smith 855d382aafbSBarry Smith Input Parameter: 856d382aafbSBarry Smith + memory1 - memory to free 857d382aafbSBarry Smith - memory2 - 2nd memory to free 858d382aafbSBarry Smith 859d382aafbSBarry Smith Level: developer 860d382aafbSBarry Smith 861d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 862d382aafbSBarry Smith 863d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 864d382aafbSBarry Smith 865d382aafbSBarry Smith Concepts: memory allocation 866d382aafbSBarry Smith 867d382aafbSBarry Smith M*/ 868d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 869d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 870d382aafbSBarry Smith #else 87181dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 872d382aafbSBarry Smith #endif 873d382aafbSBarry Smith 874d382aafbSBarry Smith /*MC 875d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 876d382aafbSBarry Smith 877eca87e8dSBarry Smith Synopsis: 878eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 879eca87e8dSBarry Smith 880eca87e8dSBarry Smith Not Collective 881eca87e8dSBarry Smith 882d382aafbSBarry Smith Input Parameter: 883d382aafbSBarry Smith + memory1 - memory to free 884d382aafbSBarry Smith . memory2 - 2nd memory to free 885d382aafbSBarry Smith - memory3 - 3rd memory to free 886d382aafbSBarry Smith 887d382aafbSBarry Smith Level: developer 888d382aafbSBarry Smith 889d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 890d382aafbSBarry Smith 891d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 892d382aafbSBarry Smith 893d382aafbSBarry Smith Concepts: memory allocation 894d382aafbSBarry Smith 895d382aafbSBarry Smith M*/ 896d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 897d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 898d382aafbSBarry Smith #else 89981dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 900d382aafbSBarry Smith #endif 901d382aafbSBarry Smith 902d382aafbSBarry Smith /*MC 903d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 904d382aafbSBarry Smith 905eca87e8dSBarry Smith Synopsis: 906eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 907eca87e8dSBarry Smith 908eca87e8dSBarry Smith Not Collective 909eca87e8dSBarry Smith 910d382aafbSBarry Smith Input Parameter: 911d382aafbSBarry Smith + m1 - memory to free 912d382aafbSBarry Smith . m2 - 2nd memory to free 913d382aafbSBarry Smith . m3 - 3rd memory to free 914d382aafbSBarry Smith - m4 - 4th memory to free 915d382aafbSBarry Smith 916d382aafbSBarry Smith Level: developer 917d382aafbSBarry Smith 918d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 919d382aafbSBarry Smith 920d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 921d382aafbSBarry Smith 922d382aafbSBarry Smith Concepts: memory allocation 923d382aafbSBarry Smith 924d382aafbSBarry Smith M*/ 925d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 926d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 927d382aafbSBarry Smith #else 92881dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 929d382aafbSBarry Smith #endif 930d382aafbSBarry Smith 931d382aafbSBarry Smith /*MC 932d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 933d382aafbSBarry Smith 934eca87e8dSBarry Smith Synopsis: 935eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 936eca87e8dSBarry Smith 937eca87e8dSBarry Smith Not Collective 938eca87e8dSBarry Smith 939d382aafbSBarry Smith Input Parameter: 940d382aafbSBarry Smith + m1 - memory to free 941d382aafbSBarry Smith . m2 - 2nd memory to free 942d382aafbSBarry Smith . m3 - 3rd memory to free 943d382aafbSBarry Smith . m4 - 4th memory to free 944d382aafbSBarry Smith - m5 - 5th memory to free 945d382aafbSBarry Smith 946d382aafbSBarry Smith Level: developer 947d382aafbSBarry Smith 948d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 949d382aafbSBarry Smith 950d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 951d382aafbSBarry Smith 952d382aafbSBarry Smith Concepts: memory allocation 953d382aafbSBarry Smith 954d382aafbSBarry Smith M*/ 955d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 956d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 957d382aafbSBarry Smith #else 95881dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 959d382aafbSBarry Smith #endif 960d382aafbSBarry Smith 961d382aafbSBarry Smith 962d382aafbSBarry Smith /*MC 963d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 964d382aafbSBarry Smith 965eca87e8dSBarry Smith Synopsis: 966eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 967eca87e8dSBarry Smith 968eca87e8dSBarry Smith Not Collective 969eca87e8dSBarry Smith 970d382aafbSBarry Smith Input Parameter: 971d382aafbSBarry Smith + m1 - memory to free 972d382aafbSBarry Smith . m2 - 2nd memory to free 973d382aafbSBarry Smith . m3 - 3rd memory to free 974d382aafbSBarry Smith . m4 - 4th memory to free 975d382aafbSBarry Smith . m5 - 5th memory to free 976d382aafbSBarry Smith - m6 - 6th memory to free 977d382aafbSBarry Smith 978d382aafbSBarry Smith 979d382aafbSBarry Smith Level: developer 980d382aafbSBarry Smith 981d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 982d382aafbSBarry Smith 983d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 984d382aafbSBarry Smith 985d382aafbSBarry Smith Concepts: memory allocation 986d382aafbSBarry Smith 987d382aafbSBarry Smith M*/ 988d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 989d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 990d382aafbSBarry Smith #else 99181dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 992d382aafbSBarry Smith #endif 993d382aafbSBarry Smith 994d382aafbSBarry Smith /*MC 995d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 996d382aafbSBarry Smith 997eca87e8dSBarry Smith Synopsis: 998eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 999eca87e8dSBarry Smith 1000eca87e8dSBarry Smith Not Collective 1001eca87e8dSBarry Smith 1002d382aafbSBarry Smith Input Parameter: 1003d382aafbSBarry Smith + m1 - memory to free 1004d382aafbSBarry Smith . m2 - 2nd memory to free 1005d382aafbSBarry Smith . m3 - 3rd memory to free 1006d382aafbSBarry Smith . m4 - 4th memory to free 1007d382aafbSBarry Smith . m5 - 5th memory to free 1008d382aafbSBarry Smith . m6 - 6th memory to free 1009d382aafbSBarry Smith - m7 - 7th memory to free 1010d382aafbSBarry Smith 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith Level: developer 1013d382aafbSBarry Smith 1014d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1015d382aafbSBarry Smith 1016d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1017d382aafbSBarry Smith PetscMalloc7() 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith Concepts: memory allocation 1020d382aafbSBarry Smith 1021d382aafbSBarry Smith M*/ 1022d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1023d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1024d382aafbSBarry Smith #else 102581dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1026d382aafbSBarry Smith #endif 1027d382aafbSBarry Smith 1028014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 1029014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 1030014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 1031014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1032d382aafbSBarry Smith 1033d382aafbSBarry Smith /* 1034a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1035a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1036a5057860SBarry Smith timing etc. 1037a5057860SBarry Smith */ 1038a5057860SBarry Smith typedef double PetscLogDouble; 1039a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1040a5057860SBarry Smith 1041a5057860SBarry Smith /* 104266d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1043d382aafbSBarry Smith */ 1044014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1045014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1046014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1047014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1048014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 1049014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 1050014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1051574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1052014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1053d382aafbSBarry Smith 1054d382aafbSBarry Smith /*E 1055d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1056d382aafbSBarry Smith 1057d382aafbSBarry Smith Level: beginner 1058d382aafbSBarry Smith 1059d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1060d382aafbSBarry Smith 1061d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1062d382aafbSBarry Smith PetscDataTypeGetSize() 1063d382aafbSBarry Smith 1064d382aafbSBarry Smith E*/ 1065d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 10662d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 10676a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1068d382aafbSBarry Smith 1069d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1070d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1071d382aafbSBarry Smith #else 1072ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1073d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 107459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 107559a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1076d382aafbSBarry Smith #else 1077d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1078d382aafbSBarry Smith #endif 1079d382aafbSBarry Smith #endif 1080ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1081d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 108259a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 108359a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1084d382aafbSBarry Smith #else 1085d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1086d382aafbSBarry Smith #endif 1087d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1088d382aafbSBarry Smith 1089014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1090014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1091014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1092d382aafbSBarry Smith 1093d382aafbSBarry Smith /* 1094d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1095d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1096d382aafbSBarry Smith functionality and/or error checking. 1097d382aafbSBarry Smith */ 1098014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1099014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1100014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1101014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1102d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1103014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1104014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1105014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1106014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1107014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1108014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1109014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1110014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1111014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1112014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1113014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 1114014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1115014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1116014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 1118014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1119014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 112047340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 11216fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1122014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1123d382aafbSBarry Smith 1124d382aafbSBarry Smith /*S 1125d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1126d382aafbSBarry Smith 1127d382aafbSBarry Smith Level: intermediate 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1130d382aafbSBarry Smith S*/ 1131d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1132d382aafbSBarry Smith 1133014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1134014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1135014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith /* 1138d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1139d382aafbSBarry Smith */ 1140014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 11412414b3c7SJed Brown #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1142014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 11432414b3c7SJed Brown #else 11442414b3c7SJed Brown #define MPIU_SUM MPI_SUM 11452414b3c7SJed Brown #endif 11462414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1147014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1148014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1149d9822059SBarry Smith #else 1150d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1151d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1152d9822059SBarry Smith #endif 1153014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1154d382aafbSBarry Smith 1155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1157eb3f98d2SBarry Smith 1158d382aafbSBarry Smith /*S 1159d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1160d382aafbSBarry Smith 1161d382aafbSBarry Smith Level: beginner 1162d382aafbSBarry Smith 11632981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1164d382aafbSBarry Smith 11651890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1166d382aafbSBarry Smith S*/ 1167d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1168d382aafbSBarry Smith 1169d382aafbSBarry Smith /*S 1170d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1171d382aafbSBarry Smith by string name 1172d382aafbSBarry Smith 1173d382aafbSBarry Smith Level: advanced 1174d382aafbSBarry Smith 11752981ebdbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy(), PetscOpFlist 1176d382aafbSBarry Smith S*/ 1177d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1178d382aafbSBarry Smith 1179e4d1774bSDmitry Karpeev /*S 1180e4d1774bSDmitry Karpeev PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries, 1181e4d1774bSDmitry Karpeev accessed by string op name together with string argument types. 1182e4d1774bSDmitry Karpeev 1183e4d1774bSDmitry Karpeev Level: advanced 1184e4d1774bSDmitry Karpeev 11852981ebdbSBarry Smith .seealso: PetscFList, PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy() 1186e4d1774bSDmitry Karpeev S*/ 1187e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList; 1188e4d1774bSDmitry Karpeev 1189d382aafbSBarry Smith /*E 1190d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1191d382aafbSBarry Smith 1192d382aafbSBarry Smith Level: beginner 1193d382aafbSBarry Smith 1194d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1195d382aafbSBarry Smith 1196d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1197d382aafbSBarry Smith 1198d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1199d382aafbSBarry Smith 1200d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1205d382aafbSBarry Smith E*/ 1206d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1207d382aafbSBarry Smith 12082c8e378dSBarry Smith #include <petscviewer.h> 12092c8e378dSBarry Smith #include <petscoptions.h> 1210d382aafbSBarry Smith 12110700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1212014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1213014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1214014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith /* 1217d382aafbSBarry Smith Routines that get memory usage information from the OS 1218d382aafbSBarry Smith */ 1219014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1220014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1221014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1222014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1223d382aafbSBarry Smith 1224014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1225014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTime(PetscLogDouble*); 1226014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 1227014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith /* 1230d382aafbSBarry Smith Initialization of PETSc 1231d382aafbSBarry Smith */ 1232014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1233014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1234014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1235014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1236014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1237014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1238014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1239014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1240014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1241014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1242d382aafbSBarry Smith 1243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(const char[]); 1245d382aafbSBarry Smith 1246014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD; 1247014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1248014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1249014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void); 1250014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1251014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1252014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1253014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1254d382aafbSBarry Smith 1255014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1256014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1257014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1258014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith /* 1261d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 12622981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1263d382aafbSBarry Smith */ 1264638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1265638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1266638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1267d382aafbSBarry Smith 1268d382aafbSBarry Smith /* 1269d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1270d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1271503cfb0cSBarry Smith 1272503cfb0cSBarry Smith Level: developer 1273503cfb0cSBarry Smith 1274503cfb0cSBarry Smith .seealso: PetscUseMethod() 1275d382aafbSBarry Smith */ 1276d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1277d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1278d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1279d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1280d382aafbSBarry Smith } 1281503cfb0cSBarry Smith 1282503cfb0cSBarry Smith /* 1283503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1284503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1285503cfb0cSBarry Smith 1286503cfb0cSBarry Smith Level: developer 1287503cfb0cSBarry Smith 1288503cfb0cSBarry Smith .seealso: PetscTryMethod() 1289503cfb0cSBarry Smith */ 1290d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1291d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1292d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1293d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1294703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1295d382aafbSBarry Smith } 1296503cfb0cSBarry Smith 1297d382aafbSBarry Smith /* 1298d382aafbSBarry Smith Functions that can act on any PETSc object. 1299d382aafbSBarry Smith */ 1300014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1301014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1303014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1308014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 1310014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1321014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 1322014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1323014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1325014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith /*MC 1331d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1332d382aafbSBarry Smith 1333eca87e8dSBarry Smith Synopsis: 1334eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1335eca87e8dSBarry Smith 1336ad4df100SBarry Smith Logically Collective on PetscObject 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith Input Parameters: 1339d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1340d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1341d382aafbSBarry Smith . name - name associated with the child function 1342d382aafbSBarry Smith . fname - name of the function 1343d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith Level: advanced 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith 1348d382aafbSBarry Smith Notes: 1349d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1350d382aafbSBarry Smith 1351d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1352d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1353d382aafbSBarry Smith 1354d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 135520de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1356d382aafbSBarry Smith enabled. 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith Concepts: objects^composing functions 1359d382aafbSBarry Smith Concepts: composing functions 1360d382aafbSBarry Smith Concepts: functions^querying 1361d382aafbSBarry Smith Concepts: objects^querying 1362d382aafbSBarry Smith Concepts: querying objects 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1365d382aafbSBarry Smith M*/ 1366d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1367d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1368d382aafbSBarry Smith #else 1369d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1370d382aafbSBarry Smith #endif 1371d382aafbSBarry Smith 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAMSPublish(PetscObject); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectUnPublish(PetscObject); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1387d382aafbSBarry Smith 13887d5d4d99SBarry Smith typedef void* PetscDLHandle; 1389*e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 1390*e4d177b5SBarry Smith extern PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 13917d5d4d99SBarry Smith extern PetscErrorCode PetscDLClose(PetscDLHandle *); 13927d5d4d99SBarry Smith extern PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 13937d5d4d99SBarry Smith 1394d382aafbSBarry Smith /* 1395d382aafbSBarry Smith Defines PETSc error handling. 1396d382aafbSBarry Smith */ 13972c8e378dSBarry Smith #include <petscerror.h> 1398d382aafbSBarry Smith 1399d382aafbSBarry Smith /*S 1400503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1401d382aafbSBarry Smith 14021d0fab5eSBarry Smith Level: developer 1403d382aafbSBarry Smith 14041d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14051d0fab5eSBarry Smith 14062981ebdbSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFList 1407d382aafbSBarry Smith S*/ 1408d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1409d382aafbSBarry Smith 1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListDestroy(PetscOList*); 1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1416d382aafbSBarry Smith 1417d382aafbSBarry Smith /* 1418503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1419d382aafbSBarry Smith link libraries that will be loaded as needed. 1420d382aafbSBarry Smith */ 1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListDestroy(PetscFList*); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1425d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1426d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1427d382aafbSBarry Smith #else 1428d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1429d382aafbSBarry Smith #endif 1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListView(PetscFList,PetscViewer); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListConcat(const char [],const char [],char []); 1433065533a5SJed Brown PETSC_EXTERN PetscErrorCode PetscFListGet(PetscFList,const char ***,int*); 1434d382aafbSBarry Smith 143548703020SDmitry Karpeev /* 143648703020SDmitry Karpeev Multiple dispatch operation function lists. Lists of names of routines with corresponding 143748703020SDmitry Karpeev argument type names with function pointers or in dynamic link libraries that will be loaded 143848703020SDmitry Karpeev as needed. Search on the op name and argument type names. 143948703020SDmitry Karpeev */ 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]); 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListDestroy(PetscOpFList*); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer); 14442981ebdbSBarry Smith 1445d382aafbSBarry Smith /*S 1446d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1447d382aafbSBarry Smith 1448d382aafbSBarry Smith Level: advanced 1449d382aafbSBarry Smith 145020de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1451d382aafbSBarry Smith 1452d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1453d382aafbSBarry Smith S*/ 1454d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1455014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1463d382aafbSBarry Smith 1464d382aafbSBarry Smith /* 1465a5a3d712SDmitry Karpeev PetscShell support. Needs to be better documented. 146605846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 146705846914SDmitry Karpeev */ 14682c8e378dSBarry Smith #include <petscshell.h> 146905846914SDmitry Karpeev 147005846914SDmitry Karpeev /* 1471d382aafbSBarry Smith Useful utility routines 1472d382aafbSBarry Smith */ 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1479d382aafbSBarry Smith 1480503cfb0cSBarry Smith /* 1481ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1482503cfb0cSBarry Smith 1483503cfb0cSBarry Smith Notes: This is useful in cases like 1484503cfb0cSBarry Smith $ int *a; 1485ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1486ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1487503cfb0cSBarry Smith */ 1488d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1489503cfb0cSBarry Smith 1490d382aafbSBarry Smith /* 1491d382aafbSBarry Smith Defines basic graphics available from PETSc. 1492d382aafbSBarry Smith */ 14932c8e378dSBarry Smith #include <petscdraw.h> 1494d382aafbSBarry Smith 1495cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1496cae2f346SBarry Smith # include <valgrind/valgrind.h> 1497cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1498cae2f346SBarry Smith #else 1499cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1500cae2f346SBarry Smith #endif 1501cae2f346SBarry Smith 1502d382aafbSBarry Smith /* 1503d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1504d382aafbSBarry Smith */ 15052c8e378dSBarry Smith #include <petsc-private/petscimpl.h> 1506503cfb0cSBarry Smith 1507238ccf28SShri Abhyankar 1508d382aafbSBarry Smith /*MC 1509d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1510d382aafbSBarry Smith 1511d382aafbSBarry Smith Synopsis: 1512d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1513d382aafbSBarry Smith 1514eca87e8dSBarry Smith Not Collective 1515eca87e8dSBarry Smith 1516d382aafbSBarry Smith Input Parameters: 1517d382aafbSBarry Smith . format - the usual printf() format string 1518d382aafbSBarry Smith 1519d382aafbSBarry Smith Options Database Keys: 1520d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1521d382aafbSBarry Smith (default) stderr 1522d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1523d382aafbSBarry Smith error is handled.) 1524d382aafbSBarry Smith 1525d382aafbSBarry Smith Notes: Use 1526d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1527d382aafbSBarry Smith $ error is handled.) and 1528d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1529c9a19010SBarry Smith $ of you can use your own function 1530d382aafbSBarry Smith 1531d382aafbSBarry Smith Use 1532d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1533d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1534d382aafbSBarry Smith 1535d382aafbSBarry Smith Use 1536d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1537d382aafbSBarry Smith 1538d382aafbSBarry Smith Level: developer 1539d382aafbSBarry Smith 1540d382aafbSBarry Smith Fortran Note: 1541d382aafbSBarry Smith This routine is not supported in Fortran. 1542d382aafbSBarry Smith 1543d382aafbSBarry Smith Concepts: error messages^printing 1544d382aafbSBarry Smith Concepts: printing^error messages 1545d382aafbSBarry Smith 1546c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1547d382aafbSBarry Smith M*/ 1548014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1549d382aafbSBarry Smith 1550d382aafbSBarry Smith /*MC 1551d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1552d382aafbSBarry Smith 1553d382aafbSBarry Smith Synopsis: 1554d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1555d382aafbSBarry Smith 1556eca87e8dSBarry Smith Not Collective 1557eca87e8dSBarry Smith 1558d382aafbSBarry Smith Input Parameters: 1559d382aafbSBarry Smith . format - the usual printf() format string 1560d382aafbSBarry Smith 1561d382aafbSBarry Smith Level: developer 1562d382aafbSBarry Smith 1563d382aafbSBarry Smith Fortran Note: 1564d382aafbSBarry Smith This routine is not supported in Fortran. 1565d382aafbSBarry Smith 1566d382aafbSBarry Smith Concepts: help messages^printing 1567d382aafbSBarry Smith Concepts: printing^help messages 1568d382aafbSBarry Smith 1569d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1570d382aafbSBarry Smith M*/ 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1572d382aafbSBarry Smith 1573fcfd50ebSBarry Smith /* 1574fcfd50ebSBarry Smith Defines PETSc profiling. 1575fcfd50ebSBarry Smith */ 15762c8e378dSBarry Smith #include <petsclog.h> 1577fcfd50ebSBarry Smith 1578fcfd50ebSBarry Smith /* 1579fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1580fcfd50ebSBarry Smith */ 1581fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1582014dd563SJed Brown PETSC_EXTERN PetscBool PetscAMSPublishAll; 1583fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1584fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1585fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1586fcfd50ebSBarry Smith #else 1587fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1588fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1589fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1590fcfd50ebSBarry Smith #endif 1591fcfd50ebSBarry Smith 1592fcfd50ebSBarry Smith /* 1593fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1594fcfd50ebSBarry Smith */ 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1602fcfd50ebSBarry Smith 1603fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1604fcfd50ebSBarry Smith #include <stdarg.h> 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1608fcfd50ebSBarry Smith 1609fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1611fcfd50ebSBarry Smith #endif 1612fcfd50ebSBarry Smith 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1616d382aafbSBarry Smith 1617d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1619784ad74dSJed Brown PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,PetscInt*); 1620d382aafbSBarry Smith #endif 1621d382aafbSBarry Smith 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1629d382aafbSBarry Smith 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1631d382aafbSBarry Smith 1632d382aafbSBarry Smith /*S 1633d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1634d382aafbSBarry Smith 1635d382aafbSBarry Smith Level: advanced 1636d382aafbSBarry Smith 1637d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1638d382aafbSBarry Smith S*/ 1639014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1640d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1646d382aafbSBarry Smith 1647d382aafbSBarry Smith /* 1648d382aafbSBarry Smith For use in debuggers 1649d382aafbSBarry Smith */ 1650014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1651014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1655d382aafbSBarry Smith 1656d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1657d382aafbSBarry Smith #include <memory.h> 1658d382aafbSBarry Smith #endif 1659d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1660d382aafbSBarry Smith #include <stdlib.h> 1661d382aafbSBarry Smith #endif 1662d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1663d382aafbSBarry Smith #include <strings.h> 1664d382aafbSBarry Smith #endif 1665d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1666d382aafbSBarry Smith #include <string.h> 1667d382aafbSBarry Smith #endif 16686c7e564aSBarry Smith 16694a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1670d382aafbSBarry Smith #include <xmmintrin.h> 1671d382aafbSBarry Smith #endif 1672d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1673d382aafbSBarry Smith #include <stdint.h> 1674d382aafbSBarry Smith #endif 1675d382aafbSBarry Smith 1676fcfd50ebSBarry Smith #undef __FUNCT__ 1677fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1678d382aafbSBarry Smith /*@C 1679d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1680d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1681d382aafbSBarry Smith PetscMemmove() in that case. 1682d382aafbSBarry Smith 1683d382aafbSBarry Smith Not Collective 1684d382aafbSBarry Smith 1685d382aafbSBarry Smith Input Parameters: 1686d382aafbSBarry Smith + b - pointer to initial memory space 1687d382aafbSBarry Smith - n - length (in bytes) of space to copy 1688d382aafbSBarry Smith 1689d382aafbSBarry Smith Output Parameter: 1690d382aafbSBarry Smith . a - pointer to copy space 1691d382aafbSBarry Smith 1692d382aafbSBarry Smith Level: intermediate 1693d382aafbSBarry Smith 1694d382aafbSBarry Smith Compile Option: 1695d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1696d382aafbSBarry Smith for memory copies on double precision values. 1697d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1698d382aafbSBarry Smith for memory copies on double precision values. 1699d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1700d382aafbSBarry Smith for memory copies on double precision values. 1701d382aafbSBarry Smith 1702d382aafbSBarry Smith Note: 1703d382aafbSBarry Smith This routine is analogous to memcpy(). 1704d382aafbSBarry Smith 1705503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1706503cfb0cSBarry Smith 1707d382aafbSBarry Smith Concepts: memory^copying 1708d382aafbSBarry Smith Concepts: copying^memory 1709d382aafbSBarry Smith 1710d382aafbSBarry Smith .seealso: PetscMemmove() 1711d382aafbSBarry Smith 1712d382aafbSBarry Smith @*/ 17137087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1714d382aafbSBarry Smith { 1715d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1716d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1717d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1718a7e36092SMatthew G Knepley PetscFunctionBegin; 1719e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1720e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1721a7e36092SMatthew G Knepley #else 1722d382aafbSBarry Smith PetscFunctionBegin; 1723a7e36092SMatthew G Knepley #endif 1724d382aafbSBarry Smith if (a != b) { 1725d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1726e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1727d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1728d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1729d382aafbSBarry Smith #endif 1730d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1731d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1732d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1733d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1734d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1735d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1736d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1737d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1738d382aafbSBarry Smith #else 1739d382aafbSBarry Smith size_t i; 1740d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1741d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1742d382aafbSBarry Smith #endif 1743d382aafbSBarry Smith } else { 1744d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1745d382aafbSBarry Smith } 1746d382aafbSBarry Smith #else 1747d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1748d382aafbSBarry Smith #endif 1749d382aafbSBarry Smith } 1750d382aafbSBarry Smith PetscFunctionReturn(0); 1751d382aafbSBarry Smith } 1752d382aafbSBarry Smith 1753d382aafbSBarry Smith /*@C 1754d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1755d382aafbSBarry Smith 1756d382aafbSBarry Smith Not Collective 1757d382aafbSBarry Smith 1758d382aafbSBarry Smith Input Parameters: 1759d382aafbSBarry Smith + a - pointer to beginning memory location 1760d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1761d382aafbSBarry Smith 1762d382aafbSBarry Smith Level: intermediate 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith Compile Option: 1765d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1766d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1767d382aafbSBarry Smith 1768503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1769503cfb0cSBarry Smith 1770d382aafbSBarry Smith Concepts: memory^zeroing 1771d382aafbSBarry Smith Concepts: zeroing^memory 1772d382aafbSBarry Smith 1773d382aafbSBarry Smith .seealso: PetscMemcpy() 1774d382aafbSBarry Smith @*/ 17757087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1776d382aafbSBarry Smith { 1777d382aafbSBarry Smith if (n > 0) { 1778d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1779e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1780d382aafbSBarry Smith #endif 1781d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1782d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1783d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1784d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1785d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1786d382aafbSBarry Smith } else { 1787d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1788d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1789d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1790d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1791d382aafbSBarry Smith } else { 1792d382aafbSBarry Smith #endif 1793d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1794d382aafbSBarry Smith bzero((char *)a,n); 1795d382aafbSBarry Smith #else 1796d382aafbSBarry Smith memset((char*)a,0,n); 1797d382aafbSBarry Smith #endif 1798d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1799d382aafbSBarry Smith } 1800d382aafbSBarry Smith #endif 1801d382aafbSBarry Smith } 1802d382aafbSBarry Smith return 0; 1803d382aafbSBarry Smith } 1804d382aafbSBarry Smith 1805d382aafbSBarry Smith /*MC 1806d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1807d382aafbSBarry Smith 1808eca87e8dSBarry Smith Synopsis: 1809eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1810eca87e8dSBarry Smith 1811d382aafbSBarry Smith Not Collective 1812d382aafbSBarry Smith 1813d382aafbSBarry Smith Input Parameters: 1814d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1815d382aafbSBarry Smith . n - number of elements to fetch 1816d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 181750d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1818d382aafbSBarry Smith 1819d382aafbSBarry Smith Level: developer 1820d382aafbSBarry Smith 1821d382aafbSBarry Smith Notes: 1822d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1823d382aafbSBarry Smith 182450d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 182550d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 182650d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 182763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 182863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 182963cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1830d382aafbSBarry Smith 1831d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1832d382aafbSBarry Smith address). 1833d382aafbSBarry Smith 1834d382aafbSBarry Smith Concepts: memory 1835d382aafbSBarry Smith M*/ 1836d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1837d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1838d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1839d382aafbSBarry Smith } while (0) 1840d382aafbSBarry Smith 1841d382aafbSBarry Smith /* 1842e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1843d382aafbSBarry Smith */ 18442c8e378dSBarry Smith #include <petscmatlab.h> 1845d382aafbSBarry Smith 1846d382aafbSBarry Smith /* 1847d382aafbSBarry Smith Determine if some of the kernel computation routines use 1848d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1849d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1850d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1851e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1852d382aafbSBarry Smith */ 1853d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1856d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1857d382aafbSBarry Smith #endif 1858d382aafbSBarry Smith 18595a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 18605a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1861d382aafbSBarry Smith #endif 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1864d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1865d382aafbSBarry Smith #endif 1866d382aafbSBarry Smith 1867d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1868d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1869d382aafbSBarry Smith #endif 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1872d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1873d382aafbSBarry Smith #endif 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1876d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1877d382aafbSBarry Smith #endif 1878d382aafbSBarry Smith 1879d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1880d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1881d382aafbSBarry Smith #endif 1882d382aafbSBarry Smith 1883d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1884d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1885d382aafbSBarry Smith #endif 1886d382aafbSBarry Smith 1887d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1888d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1889d382aafbSBarry Smith #endif 1890d382aafbSBarry Smith 1891d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1892d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1893d382aafbSBarry Smith #endif 1894d382aafbSBarry Smith 1895d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1896d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1897d382aafbSBarry Smith #endif 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1900d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1901d382aafbSBarry Smith #endif 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1904d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1905d382aafbSBarry Smith #endif 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1908d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1909d382aafbSBarry Smith #endif 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith #endif 1912d382aafbSBarry Smith 1913d382aafbSBarry Smith /* 1914d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1915d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1916d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1917d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1918d382aafbSBarry Smith ugly extern "C" {} wrappers. 1919d382aafbSBarry Smith */ 1920d382aafbSBarry Smith #if defined(__cplusplus) 1921014dd563SJed Brown #define PETSC_EXTERN_C extern "C" PETSC_VISIBILITY_PUBLIC 1922d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1923d382aafbSBarry Smith #define EXTERN_C_END } 1924d382aafbSBarry Smith #else 1925014dd563SJed Brown #define PETSC_EXTERN_C PETSC_EXTERN 1926d382aafbSBarry Smith #define EXTERN_C_BEGIN 1927d382aafbSBarry Smith #define EXTERN_C_END 1928d382aafbSBarry Smith #endif 1929d382aafbSBarry Smith 1930d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1931d382aafbSBarry Smith 1932d382aafbSBarry Smith /*MC 1933d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1934d382aafbSBarry Smith communication 1935d382aafbSBarry Smith 1936d382aafbSBarry Smith Level: beginner 1937d382aafbSBarry Smith 1938d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1939d382aafbSBarry Smith 1940d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1941d382aafbSBarry Smith M*/ 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith /*MC 1944d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1945d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1946d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1947d382aafbSBarry Smith 1948d382aafbSBarry Smith 1949d382aafbSBarry Smith Level: beginner 1950d382aafbSBarry Smith 1951d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1952d382aafbSBarry Smith M*/ 1953d382aafbSBarry Smith 1954d382aafbSBarry Smith /*MC 1955d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1956d382aafbSBarry Smith 1957d382aafbSBarry Smith Level: beginner 1958d382aafbSBarry Smith 1959d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1960d382aafbSBarry Smith M*/ 1961d382aafbSBarry Smith 1962d382aafbSBarry Smith /*MC 1963d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1964d382aafbSBarry Smith Level: beginner 1965d382aafbSBarry Smith 1966d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 1967d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1968d382aafbSBarry Smith 1969d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 1970d382aafbSBarry Smith M*/ 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith /*MC 1973d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith Level: beginner 1976d382aafbSBarry Smith 1977d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 1978d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 1981d382aafbSBarry Smith M*/ 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith /*MC 1984d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith Level: beginner 1987d382aafbSBarry Smith 1988d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 1989d382aafbSBarry Smith pass this value 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 1992d382aafbSBarry Smith M*/ 1993d382aafbSBarry Smith 1994d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1995d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 1996014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1997014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1998d382aafbSBarry Smith #else 1999d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2000d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2001d382aafbSBarry Smith #endif 2002d382aafbSBarry Smith #endif 2003d382aafbSBarry Smith 2004d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2005d382aafbSBarry Smith 2006d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2007d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2008d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2009d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2010d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2011d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2012d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2013d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2014d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2017e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2018e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2019eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2020eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2021d382aafbSBarry Smith 2022d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2023e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2024eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2025d382aafbSBarry Smith #else 2026d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2027d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2028d382aafbSBarry Smith #endif 2029d382aafbSBarry Smith 2030d382aafbSBarry Smith #else 2031d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2032d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2033d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2034d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2035d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2036d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2037d382aafbSBarry Smith #endif 2038d382aafbSBarry Smith 2039d382aafbSBarry Smith /* 20402981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2041d382aafbSBarry Smith */ 2042d382aafbSBarry Smith #if defined(hz) 2043d382aafbSBarry Smith #undef hz 2044d382aafbSBarry Smith #endif 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2047d382aafbSBarry Smith 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2050d382aafbSBarry Smith #include <limits.h> 2051d382aafbSBarry Smith #endif 2052d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2053d382aafbSBarry Smith #include <sys/param.h> 2054d382aafbSBarry Smith #endif 2055d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2056d382aafbSBarry Smith #include <sys/types.h> 2057d382aafbSBarry Smith #endif 2058d382aafbSBarry Smith #if defined(MAXPATHLEN) 2059d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2060d382aafbSBarry Smith #elif defined(MAX_PATH) 2061d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2062d382aafbSBarry Smith #elif defined(_MAX_PATH) 2063d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2064d382aafbSBarry Smith #else 2065d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2066d382aafbSBarry Smith #endif 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith /* Special support for C++ */ 20692c8e378dSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) 20702c8e378dSBarry Smith #include <petscsys.hh> 20712c8e378dSBarry Smith #endif 20726c7e564aSBarry Smith 2073d382aafbSBarry Smith /*MC 2074d382aafbSBarry Smith 2075d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith $ 1) classic Fortran 77 style 2078d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2079d382aafbSBarry Smith $ XXX variablename 2080d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2081d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2082d382aafbSBarry Smith $ 2083d382aafbSBarry Smith $ 2) classic Fortran 90 style 2084d1716517SSatish Balay $#include "finclude/petscXXX.h" 2085d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2086d382aafbSBarry Smith $ XXX variablename 2087d382aafbSBarry Smith $ 2088d382aafbSBarry Smith $ 3) Using Fortran modules 2089d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2090d382aafbSBarry Smith $ use petscXXXX 2091d382aafbSBarry Smith $ XXX variablename 2092d382aafbSBarry Smith $ 2093d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2094d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2095d382aafbSBarry Smith $ use petscXXXX 2096d382aafbSBarry Smith $ type(XXX) variablename 2097e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2098d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2099d382aafbSBarry Smith 2100d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2103d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2104d382aafbSBarry Smith $ integer variablename 2105d382aafbSBarry Smith $ 2106d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2107d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2110d382aafbSBarry Smith for only a few PETSc functions. 2111d382aafbSBarry Smith 2112d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2113d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2114d382aafbSBarry Smith you cannot have something like 2115d382aafbSBarry Smith $ PetscInt row,col 2116d382aafbSBarry Smith $ PetscScalar val 2117d382aafbSBarry Smith $ ... 2118d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2119d382aafbSBarry Smith You must instead have 2120d382aafbSBarry Smith $ PetscInt row(1),col(1) 2121d382aafbSBarry Smith $ PetscScalar val(1) 2122d382aafbSBarry Smith $ ... 2123d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2127d382aafbSBarry Smith 2128d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2129d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2132d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2133d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2136e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2139d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2140d382aafbSBarry Smith 2141d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2142d382aafbSBarry Smith automatically by "make allfortranstubs". 2143d382aafbSBarry Smith 2144e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2145d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2146d382aafbSBarry Smith include their predecessors 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith Level: beginner 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith M*/ 2151d382aafbSBarry Smith 2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2157014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 215827710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2159d382aafbSBarry Smith 2160014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2161014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 216260e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2163014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2164014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2166014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 216717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 216817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2169014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2170014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2171014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2172014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2173014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2174014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2175014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2176014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2177d382aafbSBarry Smith 2178014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2179014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2180d382aafbSBarry Smith 218176bdecfbSBarry Smith /*J 2182d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2183d382aafbSBarry Smith with an optional dynamic library name, for example 2184d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2185d382aafbSBarry Smith 2186d382aafbSBarry Smith Level: beginner 2187d382aafbSBarry Smith 2188e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2189d382aafbSBarry Smith with the option --download-sprng 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 219276bdecfbSBarry Smith J*/ 219319fd82e9SBarry Smith typedef const char* PetscRandomType; 2194d382aafbSBarry Smith #define PETSCRAND "rand" 2195d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2196d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2197d382aafbSBarry Smith 2198d382aafbSBarry Smith /* Logging support */ 2199014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2200d382aafbSBarry Smith 2201014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(const char[]); 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith /*S 2204d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2205d382aafbSBarry Smith 2206d382aafbSBarry Smith Level: intermediate 2207d382aafbSBarry Smith 2208d382aafbSBarry Smith Concepts: random numbers 2209d382aafbSBarry Smith 2210d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2211d382aafbSBarry Smith S*/ 2212d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2213d382aafbSBarry Smith 2214d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2215014dd563SJed Brown PETSC_EXTERN PetscFList PetscRandomList; 2216014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2217d382aafbSBarry Smith 2218014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(const char []); 2219014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 2220014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterDestroy(void); 222119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2222014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 222319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2224014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 2225014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2226d382aafbSBarry Smith 2227d382aafbSBarry Smith /*MC 2228d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2229d382aafbSBarry Smith 2230d382aafbSBarry Smith Synopsis: 22311890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2232d382aafbSBarry Smith 2233d382aafbSBarry Smith Not Collective 2234d382aafbSBarry Smith 2235d382aafbSBarry Smith Input Parameters: 2236d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2237d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2238d382aafbSBarry Smith . func_name - The name of routine to create method context 2239d382aafbSBarry Smith - create_func - The creation routine itself 2240d382aafbSBarry Smith 2241d382aafbSBarry Smith Notes: 2242d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2243d382aafbSBarry Smith 2244d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2245d382aafbSBarry Smith 2246d382aafbSBarry Smith Sample usage: 2247d382aafbSBarry Smith .vb 2248d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2249d382aafbSBarry Smith .ve 2250d382aafbSBarry Smith 2251d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2252d382aafbSBarry Smith .vb 2253d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2254d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2255d382aafbSBarry Smith .ve 2256d382aafbSBarry Smith or at runtime via the option 2257d382aafbSBarry Smith .vb 2258d382aafbSBarry Smith -random_type my_random_name 2259d382aafbSBarry Smith .ve 2260d382aafbSBarry Smith 2261d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2262d382aafbSBarry Smith 2263d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2264d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2265d382aafbSBarry Smith 2266d382aafbSBarry Smith Level: advanced 2267d382aafbSBarry Smith 2268d382aafbSBarry Smith .keywords: PetscRandom, register 2269d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2270d382aafbSBarry Smith M*/ 2271d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2272d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2273d382aafbSBarry Smith #else 2274d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2275d382aafbSBarry Smith #endif 2276d382aafbSBarry Smith 2277014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2279014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2280014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2281014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2282014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2283014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2284014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2285014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2286d382aafbSBarry Smith 2287014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2288014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2289014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2290014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2291014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2292014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2293014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2294d382aafbSBarry Smith 2295014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2296014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2297014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2299014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2300014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2301014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2303014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpenSocket(char*,int,int*); 2307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2308d382aafbSBarry Smith 2309d382aafbSBarry Smith /* 2310d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2311d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2312d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2313d382aafbSBarry Smith PetscBinarySeek(). 2314d382aafbSBarry Smith */ 2315d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2316d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2317d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2318d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2319d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2320d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith /*E 2323d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2324d382aafbSBarry Smith 2325d382aafbSBarry Smith Level: advanced 2326d382aafbSBarry Smith 2327d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2328d382aafbSBarry Smith E*/ 2329d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2330014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2331014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2332014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2333d382aafbSBarry Smith 2334014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2335014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2336014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2337014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2338014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2339014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2340d382aafbSBarry Smith 2341014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2342014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2345014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2346d382aafbSBarry Smith 2347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2348d382aafbSBarry Smith 2349d382aafbSBarry Smith /*E 2350d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2351d382aafbSBarry Smith 2352d382aafbSBarry Smith Level: beginner 2353d382aafbSBarry Smith 2354d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2355d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2356d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2357d382aafbSBarry Smith E*/ 23586fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2359d382aafbSBarry Smith 2360d382aafbSBarry Smith /*MC 2361d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2362d382aafbSBarry Smith 2363d382aafbSBarry Smith Level: beginner 2364d382aafbSBarry Smith 2365d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2366eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2367eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2368d382aafbSBarry Smith 2369d382aafbSBarry Smith M*/ 2370d382aafbSBarry Smith 2371d382aafbSBarry Smith /*MC 2372d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2373d382aafbSBarry Smith value into that location 2374d382aafbSBarry Smith 2375d382aafbSBarry Smith Level: beginner 2376d382aafbSBarry Smith 2377d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2378eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2379eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2380d382aafbSBarry Smith 2381d382aafbSBarry Smith M*/ 2382d382aafbSBarry Smith 2383d382aafbSBarry Smith /*MC 2384d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2385d382aafbSBarry Smith 2386d382aafbSBarry Smith Level: beginner 2387d382aafbSBarry Smith 2388d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2389d382aafbSBarry Smith 2390d382aafbSBarry Smith M*/ 2391d382aafbSBarry Smith 2392d382aafbSBarry Smith /*S 2393d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2394d382aafbSBarry Smith 2395d382aafbSBarry Smith Level: advanced 2396d382aafbSBarry Smith 2397d382aafbSBarry Smith Concepts: communicator, create 2398d382aafbSBarry Smith S*/ 2399d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2400d382aafbSBarry Smith 2401d382aafbSBarry Smith struct _n_PetscSubcomm { 2402d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2403d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2404d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2405d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2406d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2407d382aafbSBarry Smith }; 2408d382aafbSBarry Smith 2409638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 24106a6fc655SJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 2411638faf0bSHong Zhang 2412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 2416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2417d382aafbSBarry Smith 241882a7e548SBarry Smith #include <petscctable.h> 241982a7e548SBarry Smith 24206c7e564aSBarry Smith 24219e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24229e03d832SJed Brown #undef __FUNCT__ 24239e03d832SJed Brown #define __FUNCT__ "User provided function" 24249e03d832SJed Brown 2425cae2f346SBarry Smith 2426d382aafbSBarry Smith #endif 2427