1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127*e771154cSJed Brown #if defined(PETSC_HAVE_MPIUNI) 128*e771154cSJed Brown # include <petsc/mpiuni/mpi.h> 129*e771154cSJed Brown #else 1302c8e378dSBarry Smith # include <mpi.h> 131*e771154cSJed Brown #endif 13265013866SBarry Smith 133d382aafbSBarry Smith /* 134a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 135a7886beaSBarry Smith This usually happens because 136a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 137a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 138a7886beaSBarry Smith */ 139a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 140a7886beaSBarry Smith # if !defined(__MPIUNI_H) 141a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 142a7886beaSBarry Smith # endif 14341f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14441f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14541f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 14641f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 14741f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 14841f4af4cSSatish Balay # endif 14941f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 15041f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 15141f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 15241f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 15341f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15441f4af4cSSatish Balay # endif 155a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 15641f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 157a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 158ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 159a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 160a7886beaSBarry Smith # endif 161a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 162a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 163a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 164ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 165c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 166a7886beaSBarry Smith # endif 16741f4af4cSSatish Balay #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 16841f4af4cSSatish Balay # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 169a7886beaSBarry Smith #endif 170a7886beaSBarry Smith 171a7886beaSBarry Smith /* 1722981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 173d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 174d382aafbSBarry Smith */ 175d382aafbSBarry Smith #include <stdio.h> 176d382aafbSBarry Smith 177d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 178d382aafbSBarry Smith #if !defined(MPIAPI) 179d382aafbSBarry Smith #define MPIAPI 180d382aafbSBarry Smith #endif 181d382aafbSBarry Smith 1821cc8b206SBarry Smith /* 1831cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1841cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1851cc8b206SBarry Smith does not match the actual type of the argument being passed in 1861cc8b206SBarry Smith */ 187c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 188894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 189894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1908ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1918ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 192894dd566SJed Brown # endif 193894dd566SJed Brown #endif 194894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 195894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1968ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1978ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 198894dd566SJed Brown #endif 199b3506946SBarry Smith 200d382aafbSBarry Smith /*MC 2011957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 202d382aafbSBarry Smith 203d382aafbSBarry Smith Level: beginner 204d382aafbSBarry Smith 205d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 206d382aafbSBarry Smith M*/ 207d382aafbSBarry Smith typedef int PetscErrorCode; 208d382aafbSBarry Smith 209d382aafbSBarry Smith /*MC 210d382aafbSBarry Smith 211503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 212d382aafbSBarry Smith 213e28ce29aSPatrick Sanan Notes: 214e28ce29aSPatrick Sanan Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 2151957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2161957e957SBarry Smith 217e28ce29aSPatrick Sanan Developer Notes: 218e28ce29aSPatrick Sanan Internal integer stored in the _p_PetscObject data structure. 2191957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2201957e957SBarry Smith 2211957e957SBarry Smith Level: developer 222d382aafbSBarry Smith 2230700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 224d382aafbSBarry Smith M*/ 2250700a824SBarry Smith typedef int PetscClassId; 226d382aafbSBarry Smith 227d382aafbSBarry Smith 228d382aafbSBarry Smith /*MC 229d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 230d382aafbSBarry Smith 231d382aafbSBarry Smith Level: intermediate 232d382aafbSBarry Smith 233e28ce29aSPatrick Sanan Notes: 234e28ce29aSPatrick Sanan usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 235e28ce29aSPatrick Sanan standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt; it remains 32 bit. 236d382aafbSBarry Smith 2374dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2382981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 239d382aafbSBarry Smith 2401cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 241d382aafbSBarry Smith 242d382aafbSBarry Smith M*/ 243d382aafbSBarry Smith typedef int PetscMPIInt; 244d382aafbSBarry Smith 245d382aafbSBarry Smith /*MC 246d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 247d382aafbSBarry Smith 248d382aafbSBarry Smith Level: intermediate 249d382aafbSBarry Smith 250d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 251d382aafbSBarry Smith M*/ 252d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2535a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 254d382aafbSBarry Smith 255fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 256fab38c73SJed Brown #include <stdint.h> 257fab38c73SJed Brown #endif 258a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 25913e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 260a05e1a72SSatish Balay #include <inttypes.h> 26137354ed4SSatish Balay # if !defined(PRId64) 26237354ed4SSatish Balay # define PRId64 "ld" 26337354ed4SSatish Balay # endif 264a05e1a72SSatish Balay #endif 265fab38c73SJed Brown 26699a4b90dSDave May typedef short PetscShort; 26799a4b90dSDave May typedef char PetscChar; 26899a4b90dSDave May typedef float PetscFloat; 26999a4b90dSDave May 270d382aafbSBarry Smith /*MC 271bb42e86aSJed Brown PetscInt - PETSc type that represents an integer, used primarily to 272e28ce29aSPatrick Sanan represent size of arrays and indexing into arrays. Its size can be configured with the option --with-64-bit-indices to be either 32-bit (default) or 64-bit. 273d382aafbSBarry Smith 274e28ce29aSPatrick Sanan Notes: 275e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of the size of PetscInt. 276390e1bf2SBarry Smith 277e28ce29aSPatrick Sanan Level: beginner 278390e1bf2SBarry Smith 279e28ce29aSPatrick Sanan .seealso: PetscBLASInt, PetscMPIInt, PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 280d382aafbSBarry Smith M*/ 281e28ce29aSPatrick Sanan 282e28ce29aSPatrick Sanan /*MC 283e28ce29aSPatrick Sanan MPIU_INT - MPI datatype corresponding to PetscInt 284e28ce29aSPatrick Sanan 285e28ce29aSPatrick Sanan Notes: 286e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscInt or array of PetscInt values, pass this value. 287e28ce29aSPatrick Sanan 288e28ce29aSPatrick Sanan Level: beginner 289e28ce29aSPatrick Sanan 290e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX 291e28ce29aSPatrick Sanan M*/ 292e28ce29aSPatrick Sanan 29337354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 294bafee8b4SSatish Balay typedef int64_t PetscInt64; 295bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 296a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 297fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 298bafee8b4SSatish Balay typedef long long PetscInt64; 299bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 300a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 301f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 302bafee8b4SSatish Balay typedef __int64 PetscInt64; 303bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 304a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 305236ed0a3SSatish Balay #else 306bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 307236ed0a3SSatish Balay #endif 308b7b8f77aSBarry Smith 309b7b8f77aSBarry Smith #if PETSC_SIZEOF_VOID_P == 4 310b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPI_INT 311b7b8f77aSBarry Smith #else 312b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPIU_INT64 313b7b8f77aSBarry Smith #endif 314b7b8f77aSBarry Smith 315d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 316bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 317bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 318a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 319d382aafbSBarry Smith #else 320d382aafbSBarry Smith typedef int PetscInt; 321d382aafbSBarry Smith #define MPIU_INT MPI_INT 322a05e1a72SSatish Balay #define PetscInt_FMT "d" 323d382aafbSBarry Smith #endif 324d382aafbSBarry Smith 325702bc34aSSatish Balay /*MC 326702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 327702bc34aSSatish Balay 328e28ce29aSPatrick Sanan Notes: 329e28ce29aSPatrick Sanan Usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 330702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 331702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 332702bc34aSSatish Balay 333c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3342981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 335702bc34aSSatish Balay 336e28ce29aSPatrick Sanan Installation Notes: 337e28ce29aSPatrick Sanan The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 338702bc34aSSatish Balay if you run ./configure with the option 339149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3402981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3412981ebdbSBarry Smith 342390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 343390e1bf2SBarry Smith --known-64-bit-blas-indices 344390e1bf2SBarry Smith 345390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 346390e1bf2SBarry Smith will build a 64 bit integer version 3472981ebdbSBarry Smith 348e28ce29aSPatrick Sanan Developer Notes: 349e28ce29aSPatrick Sanan Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 350702bc34aSSatish Balay 351702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 352702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 353702bc34aSSatish Balay 354e28ce29aSPatrick Sanan Level: intermediate 355e28ce29aSPatrick Sanan 3561cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 357702bc34aSSatish Balay 358702bc34aSSatish Balay M*/ 359702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 360bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 361702bc34aSSatish Balay #else 362702bc34aSSatish Balay typedef int PetscBLASInt; 363702bc34aSSatish Balay #endif 364702bc34aSSatish Balay 365503cfb0cSBarry Smith /* 366503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 367503cfb0cSBarry Smith */ 368d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 369adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 370d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 371adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 372d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 373adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 374d382aafbSBarry Smith #else 375d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 376d382aafbSBarry Smith #endif 377d382aafbSBarry Smith 378d382aafbSBarry Smith /* 379d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 380d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 381d382aafbSBarry Smith */ 382014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 383d382aafbSBarry Smith 384d382aafbSBarry Smith /* 385d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 386d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 387d382aafbSBarry Smith */ 388014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 389d382aafbSBarry Smith 390d382aafbSBarry Smith /*MC 391d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 392d382aafbSBarry Smith 393d382aafbSBarry Smith Synopsis: 394aaa7dc30SBarry Smith #include <petscsys.h> 395ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 396d382aafbSBarry Smith 397eca87e8dSBarry Smith Not Collective 398eca87e8dSBarry Smith 399d382aafbSBarry Smith Input Parameters: 400d382aafbSBarry Smith . cond - condition or expression 401d382aafbSBarry Smith 402e28ce29aSPatrick Sanan Notes: 403e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 404d382aafbSBarry Smith branch is unlikely. 405d382aafbSBarry Smith 406d382aafbSBarry Smith Level: advanced 407d382aafbSBarry Smith 408d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 409d382aafbSBarry Smith M*/ 410d382aafbSBarry Smith 411d382aafbSBarry Smith /*MC 412d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 413d382aafbSBarry Smith 414d382aafbSBarry Smith Synopsis: 415aaa7dc30SBarry Smith #include <petscsys.h> 41623072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 417d382aafbSBarry Smith 418eca87e8dSBarry Smith Not Collective 419eca87e8dSBarry Smith 420d382aafbSBarry Smith Input Parameters: 421d382aafbSBarry Smith . cond - condition or expression 422d382aafbSBarry Smith 423e28ce29aSPatrick Sanan Notes: 424e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 425d382aafbSBarry Smith branch is likely. 426d382aafbSBarry Smith 427d382aafbSBarry Smith Level: advanced 428d382aafbSBarry Smith 429d382aafbSBarry Smith .seealso: PetscUnlikely() 430d382aafbSBarry Smith M*/ 431d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 432d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 433d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 434d382aafbSBarry Smith #else 435cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 436cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 437d382aafbSBarry Smith #endif 438d382aafbSBarry Smith 439d382aafbSBarry Smith /* 440d382aafbSBarry Smith Declare extern C stuff after including external header files 441d382aafbSBarry Smith */ 442d382aafbSBarry Smith 443d382aafbSBarry Smith 444d382aafbSBarry Smith /* 445d382aafbSBarry Smith Basic PETSc constants 446d382aafbSBarry Smith */ 447d382aafbSBarry Smith 448d382aafbSBarry Smith /*E 449ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 450d382aafbSBarry Smith 451d382aafbSBarry Smith Level: beginner 452d382aafbSBarry Smith 453e28ce29aSPatrick Sanan Developer Note: 454e28ce29aSPatrick Sanan Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 45534e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 45634e82e7dSBarry Smith 4571cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 458d382aafbSBarry Smith E*/ 459ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4606a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4615a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 46270b3c8c7SBarry Smith 4638b49ba18SBarry Smith /* 464390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4658b49ba18SBarry Smith */ 4668b49ba18SBarry Smith #include <petscmath.h> 4678b49ba18SBarry Smith 46870b3c8c7SBarry Smith /*E 46970b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 47070b3c8c7SBarry Smith 47170b3c8c7SBarry Smith Level: beginner 47270b3c8c7SBarry Smith 47370b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 47470b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 47570b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 47670b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 47770b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 47870b3c8c7SBarry Smith 47970b3c8c7SBarry Smith E*/ 48070b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4816a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 482d382aafbSBarry Smith 483d382aafbSBarry Smith /*MC 484ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 485d382aafbSBarry Smith 486d382aafbSBarry Smith Level: beginner 487d382aafbSBarry Smith 488e28ce29aSPatrick Sanan Note: 489e28ce29aSPatrick Sanan Zero integer 490d382aafbSBarry Smith 491ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 492d382aafbSBarry Smith M*/ 493d382aafbSBarry Smith 494d382aafbSBarry Smith /*MC 495ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 496d382aafbSBarry Smith 497d382aafbSBarry Smith Level: beginner 498d382aafbSBarry Smith 499e28ce29aSPatrick Sanan Note: 500e28ce29aSPatrick Sanan Nonzero integer 501d382aafbSBarry Smith 502ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 503d382aafbSBarry Smith M*/ 504d382aafbSBarry Smith 505d382aafbSBarry Smith /*MC 5060298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 507d382aafbSBarry Smith 508d382aafbSBarry Smith Level: beginner 509d382aafbSBarry Smith 510e28ce29aSPatrick Sanan Note: 511e28ce29aSPatrick Sanan Accepted by many PETSc functions to not set a parameter and instead use 512d382aafbSBarry Smith some default 513d382aafbSBarry Smith 514e28ce29aSPatrick Sanan Fortran Notes: 515e28ce29aSPatrick Sanan This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 516d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 517d382aafbSBarry Smith 518e28ce29aSPatrick Sanan .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_DETERMINE 519d382aafbSBarry Smith 520d382aafbSBarry Smith M*/ 5210298fd71SBarry Smith #define PETSC_IGNORE NULL 522d382aafbSBarry Smith 523c528d872SBarry Smith /* This is deprecated */ 524c528d872SBarry Smith #define PETSC_NULL NULL 525c528d872SBarry Smith 526d382aafbSBarry Smith /*MC 527557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 528557d4da8SBarry Smith where you wish PETSc to use the default. 529557d4da8SBarry Smith 530557d4da8SBarry Smith Level: beginner 531557d4da8SBarry Smith 532e28ce29aSPatrick Sanan .seealso: PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 533557d4da8SBarry Smith 534557d4da8SBarry Smith M*/ 535557d4da8SBarry Smith #define PETSC_DECIDE -1 536557d4da8SBarry Smith 537557d4da8SBarry Smith /*MC 538d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 539d382aafbSBarry Smith where you wish PETSc to compute the required value. 540d382aafbSBarry Smith 541d382aafbSBarry Smith Level: beginner 542d382aafbSBarry Smith 543e28ce29aSPatrick Sanan Developer Note: 544e28ce29aSPatrick Sanan I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 545557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 546557d4da8SBarry Smith 5470298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 548d382aafbSBarry Smith 549d382aafbSBarry Smith M*/ 550d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 551d382aafbSBarry Smith 552d382aafbSBarry Smith /*MC 553557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 554557d4da8SBarry Smith where you wish PETSc to use the default. 555557d4da8SBarry Smith 556557d4da8SBarry Smith Level: beginner 557557d4da8SBarry Smith 558e28ce29aSPatrick Sanan Fortran Notes: 559e28ce29aSPatrick Sanan You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 560557d4da8SBarry Smith 5610298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 562557d4da8SBarry Smith 563557d4da8SBarry Smith M*/ 564557d4da8SBarry Smith #define PETSC_DEFAULT -2 565557d4da8SBarry Smith 566557d4da8SBarry Smith /*MC 567d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 568d382aafbSBarry Smith all the processs that PETSc knows about. 569d382aafbSBarry Smith 570d382aafbSBarry Smith Level: beginner 571d382aafbSBarry Smith 572e28ce29aSPatrick Sanan Notes: 573e28ce29aSPatrick Sanan By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 574d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 575d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 576a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 577a990b902SBarry Smith 578a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 579a990b902SBarry Smith is called because it may not have a valid value yet. 580d382aafbSBarry Smith 581d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 582d382aafbSBarry Smith 583d382aafbSBarry Smith M*/ 584014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 585d382aafbSBarry Smith 586d382aafbSBarry Smith /*MC 587503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 588d382aafbSBarry Smith 589d382aafbSBarry Smith Level: beginner 590d382aafbSBarry Smith 591e28ce29aSPatrick Sanan Notes: 592e28ce29aSPatrick Sanan Do not USE/access or set this variable before PetscInitialize() has been called. 593a990b902SBarry Smith 594d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 595d382aafbSBarry Smith 596d382aafbSBarry Smith M*/ 597d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 598d382aafbSBarry Smith 599d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 600014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 601014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 6024cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 60382f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 604d382aafbSBarry Smith 605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 608d382aafbSBarry Smith 609d382aafbSBarry Smith /*MC 61095dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 611d382aafbSBarry Smith 612eca87e8dSBarry Smith Synopsis: 613aaa7dc30SBarry Smith #include <petscsys.h> 614eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 615eca87e8dSBarry Smith 616eca87e8dSBarry Smith Not Collective 617eca87e8dSBarry Smith 618d382aafbSBarry Smith Input Parameter: 619d382aafbSBarry Smith . m - number of bytes to allocate 620d382aafbSBarry Smith 621d382aafbSBarry Smith Output Parameter: 622d382aafbSBarry Smith . result - memory allocated 623d382aafbSBarry Smith 624d382aafbSBarry Smith Level: beginner 625d382aafbSBarry Smith 62649d7da52SJed Brown Notes: 62749d7da52SJed Brown Memory is always allocated at least double aligned 628d382aafbSBarry Smith 62949d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 630d382aafbSBarry Smith 631d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 632d382aafbSBarry Smith 633d382aafbSBarry Smith Concepts: memory allocation 634d382aafbSBarry Smith 635d382aafbSBarry Smith M*/ 63649d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 637d382aafbSBarry Smith 638d382aafbSBarry Smith /*MC 6393221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6403221ece2SMatthew G. Knepley 6413221ece2SMatthew G. Knepley Synopsis: 6423221ece2SMatthew G. Knepley #include <petscsys.h> 6433221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6443221ece2SMatthew G. Knepley 6453221ece2SMatthew G. Knepley Not Collective 6463221ece2SMatthew G. Knepley 6473221ece2SMatthew G. Knepley Input Parameters: 6483221ece2SMatthew G. Knepley + m - number of bytes to allocate 6493221ece2SMatthew G. Knepley - result - initial memory allocated 6503221ece2SMatthew G. Knepley 6513221ece2SMatthew G. Knepley Output Parameter: 6523221ece2SMatthew G. Knepley . result - new memory allocated 6533221ece2SMatthew G. Knepley 6543221ece2SMatthew G. Knepley Level: developer 6553221ece2SMatthew G. Knepley 6563221ece2SMatthew G. Knepley Notes: 6573221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6583221ece2SMatthew G. Knepley 6593221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6603221ece2SMatthew G. Knepley 6613221ece2SMatthew G. Knepley Concepts: memory allocation 6623221ece2SMatthew G. Knepley 6633221ece2SMatthew G. Knepley M*/ 6643221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6653221ece2SMatthew G. Knepley 6663221ece2SMatthew G. Knepley /*MC 667503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 668d382aafbSBarry Smith 669d382aafbSBarry Smith Synopsis: 670aaa7dc30SBarry Smith #include <petscsys.h> 671d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 672d382aafbSBarry Smith 673eca87e8dSBarry Smith Not Collective 674eca87e8dSBarry Smith 675eca87e8dSBarry Smith Input Parameters: 676eca87e8dSBarry Smith . addr - address to align (any pointer type) 677eca87e8dSBarry Smith 678d382aafbSBarry Smith Level: developer 679d382aafbSBarry Smith 680d382aafbSBarry Smith .seealso: PetscMallocAlign() 681d382aafbSBarry Smith 682d382aafbSBarry Smith Concepts: memory allocation 683d382aafbSBarry Smith M*/ 684d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 685d382aafbSBarry Smith 686d382aafbSBarry Smith /*MC 687785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 688d382aafbSBarry Smith 689eca87e8dSBarry Smith Synopsis: 690aaa7dc30SBarry Smith #include <petscsys.h> 691785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 692785e854fSJed Brown 693785e854fSJed Brown Not Collective 694785e854fSJed Brown 695785e854fSJed Brown Input Parameter: 696390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 697785e854fSJed Brown 698785e854fSJed Brown Output Parameter: 699785e854fSJed Brown . r1 - memory allocated in first chunk 700785e854fSJed Brown 701e28ce29aSPatrick Sanan Note: 702e28ce29aSPatrick Sanan This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 703390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 704390e1bf2SBarry Smith $ PetscInt *id; 705390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 706390e1bf2SBarry Smith not 707390e1bf2SBarry Smith $ PetscInt *id; 708390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 709390e1bf2SBarry Smith 710390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 711390e1bf2SBarry Smith 712390e1bf2SBarry Smith Level: beginner 713785e854fSJed Brown 7141795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 715785e854fSJed Brown 716785e854fSJed Brown Concepts: memory allocation 717785e854fSJed Brown 718785e854fSJed Brown M*/ 7192553b7ecSJed Brown #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 720785e854fSJed Brown 721785e854fSJed Brown /*MC 7221795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 7231795a4d1SJed Brown 7241795a4d1SJed Brown Synopsis: 725aaa7dc30SBarry Smith #include <petscsys.h> 7261795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 7271795a4d1SJed Brown 7281795a4d1SJed Brown Not Collective 7291795a4d1SJed Brown 7301795a4d1SJed Brown Input Parameter: 7311795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 7321795a4d1SJed Brown 7331795a4d1SJed Brown Output Parameter: 7341795a4d1SJed Brown . r1 - memory allocated in first chunk 7351795a4d1SJed Brown 736e28ce29aSPatrick Sanan Notes: 737e28ce29aSPatrick Sanan See PetsMalloc1() for more details on usage. 738390e1bf2SBarry Smith 739390e1bf2SBarry Smith Level: beginner 7401795a4d1SJed Brown 7411795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 7421795a4d1SJed Brown 7431795a4d1SJed Brown Concepts: memory allocation 7441795a4d1SJed Brown 7451795a4d1SJed Brown M*/ 7462553b7ecSJed Brown #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 7471795a4d1SJed Brown 7481795a4d1SJed Brown /*MC 749dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 750d382aafbSBarry Smith 751eca87e8dSBarry Smith Synopsis: 752aaa7dc30SBarry Smith #include <petscsys.h> 753dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 754eca87e8dSBarry Smith 755eca87e8dSBarry Smith Not Collective 756eca87e8dSBarry Smith 757d382aafbSBarry Smith Input Parameter: 758d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 759dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 760d382aafbSBarry Smith 761d382aafbSBarry Smith Output Parameter: 762d382aafbSBarry Smith + r1 - memory allocated in first chunk 763d382aafbSBarry Smith - r2 - memory allocated in second chunk 764d382aafbSBarry Smith 765d382aafbSBarry Smith Level: developer 766d382aafbSBarry Smith 7671795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 768d382aafbSBarry Smith 769d382aafbSBarry Smith Concepts: memory allocation 770d382aafbSBarry Smith 771d382aafbSBarry Smith M*/ 7722553b7ecSJed Brown #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 773d382aafbSBarry Smith 774d382aafbSBarry Smith /*MC 7751795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 776d382aafbSBarry Smith 777eca87e8dSBarry Smith Synopsis: 778aaa7dc30SBarry Smith #include <petscsys.h> 7791795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 780eca87e8dSBarry Smith 781eca87e8dSBarry Smith Not Collective 782eca87e8dSBarry Smith 783d382aafbSBarry Smith Input Parameter: 784d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7851795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7861795a4d1SJed Brown 7871795a4d1SJed Brown Output Parameter: 7881795a4d1SJed Brown + r1 - memory allocated in first chunk 7891795a4d1SJed Brown - r2 - memory allocated in second chunk 7901795a4d1SJed Brown 7911795a4d1SJed Brown Level: developer 7921795a4d1SJed Brown 7931795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7941795a4d1SJed Brown 7951795a4d1SJed Brown Concepts: memory allocation 7961795a4d1SJed Brown M*/ 7972553b7ecSJed Brown #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 7981795a4d1SJed Brown 7991795a4d1SJed Brown /*MC 800dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 801d382aafbSBarry Smith 802d382aafbSBarry Smith Synopsis: 803aaa7dc30SBarry Smith #include <petscsys.h> 804dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 805d382aafbSBarry Smith 806d382aafbSBarry Smith Not Collective 807d382aafbSBarry Smith 808d382aafbSBarry Smith Input Parameter: 809d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 810d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 811dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 812d382aafbSBarry Smith 813d382aafbSBarry Smith Output Parameter: 814d382aafbSBarry Smith + r1 - memory allocated in first chunk 815d382aafbSBarry Smith . r2 - memory allocated in second chunk 816d382aafbSBarry Smith - r3 - memory allocated in third chunk 817d382aafbSBarry Smith 818d382aafbSBarry Smith Level: developer 819d382aafbSBarry Smith 8201795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 821d382aafbSBarry Smith 822d382aafbSBarry Smith Concepts: memory allocation 823d382aafbSBarry Smith 824d382aafbSBarry Smith M*/ 8252553b7ecSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 826d382aafbSBarry Smith 827d382aafbSBarry Smith /*MC 8281795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 829d382aafbSBarry Smith 830eca87e8dSBarry Smith Synopsis: 831aaa7dc30SBarry Smith #include <petscsys.h> 8321795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 833eca87e8dSBarry Smith 834eca87e8dSBarry Smith Not Collective 835eca87e8dSBarry Smith 836d382aafbSBarry Smith Input Parameter: 837d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 838d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8391795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8401795a4d1SJed Brown 8411795a4d1SJed Brown Output Parameter: 8421795a4d1SJed Brown + r1 - memory allocated in first chunk 8431795a4d1SJed Brown . r2 - memory allocated in second chunk 8441795a4d1SJed Brown - r3 - memory allocated in third chunk 8451795a4d1SJed Brown 8461795a4d1SJed Brown Level: developer 8471795a4d1SJed Brown 8481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8491795a4d1SJed Brown 8501795a4d1SJed Brown Concepts: memory allocation 8511795a4d1SJed Brown M*/ 8522553b7ecSJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 8531795a4d1SJed Brown 8541795a4d1SJed Brown /*MC 855dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 856d382aafbSBarry Smith 857d382aafbSBarry Smith Synopsis: 858aaa7dc30SBarry Smith #include <petscsys.h> 859dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 860d382aafbSBarry Smith 861d382aafbSBarry Smith Not Collective 862d382aafbSBarry Smith 863d382aafbSBarry Smith Input Parameter: 864d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 865d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 866d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 867dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 868d382aafbSBarry Smith 869d382aafbSBarry Smith Output Parameter: 870d382aafbSBarry Smith + r1 - memory allocated in first chunk 871d382aafbSBarry Smith . r2 - memory allocated in second chunk 872d382aafbSBarry Smith . r3 - memory allocated in third chunk 873d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 874d382aafbSBarry Smith 875d382aafbSBarry Smith Level: developer 876d382aafbSBarry Smith 8771795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 878d382aafbSBarry Smith 879d382aafbSBarry Smith Concepts: memory allocation 880d382aafbSBarry Smith 881d382aafbSBarry Smith M*/ 8822553b7ecSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 883d382aafbSBarry Smith 884d382aafbSBarry Smith /*MC 8851795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 886d382aafbSBarry Smith 887eca87e8dSBarry Smith Synopsis: 888aaa7dc30SBarry Smith #include <petscsys.h> 8891795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 890eca87e8dSBarry Smith 891eca87e8dSBarry Smith Not Collective 892eca87e8dSBarry Smith 893e28ce29aSPatrick Sanan Input Parameters: 894d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 895d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 896d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8971795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8981795a4d1SJed Brown 899e28ce29aSPatrick Sanan Output Parameters: 9001795a4d1SJed Brown + r1 - memory allocated in first chunk 9011795a4d1SJed Brown . r2 - memory allocated in second chunk 9021795a4d1SJed Brown . r3 - memory allocated in third chunk 9031795a4d1SJed Brown - r4 - memory allocated in fourth chunk 9041795a4d1SJed Brown 9051795a4d1SJed Brown Level: developer 9061795a4d1SJed Brown 9071795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 9081795a4d1SJed Brown 9091795a4d1SJed Brown Concepts: memory allocation 9101795a4d1SJed Brown 9111795a4d1SJed Brown M*/ 9122553b7ecSJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 9131795a4d1SJed Brown 9141795a4d1SJed Brown /*MC 915dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 916d382aafbSBarry Smith 917d382aafbSBarry Smith Synopsis: 918aaa7dc30SBarry Smith #include <petscsys.h> 919dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 920d382aafbSBarry Smith 921d382aafbSBarry Smith Not Collective 922d382aafbSBarry Smith 923e28ce29aSPatrick Sanan Input Parameters: 924d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 925d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 926d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 927d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 928dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 929d382aafbSBarry Smith 930e28ce29aSPatrick Sanan Output Parameters: 931d382aafbSBarry Smith + r1 - memory allocated in first chunk 932d382aafbSBarry Smith . r2 - memory allocated in second chunk 933d382aafbSBarry Smith . r3 - memory allocated in third chunk 934d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 935d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 936d382aafbSBarry Smith 937d382aafbSBarry Smith Level: developer 938d382aafbSBarry Smith 9391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 940d382aafbSBarry Smith 941d382aafbSBarry Smith Concepts: memory allocation 942d382aafbSBarry Smith 943d382aafbSBarry Smith M*/ 9442553b7ecSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 945d382aafbSBarry Smith 946d382aafbSBarry Smith /*MC 9471795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 948d382aafbSBarry Smith 949eca87e8dSBarry Smith Synopsis: 950aaa7dc30SBarry Smith #include <petscsys.h> 9511795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 952eca87e8dSBarry Smith 953eca87e8dSBarry Smith Not Collective 954eca87e8dSBarry Smith 955e28ce29aSPatrick Sanan Input Parameters: 956d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 957d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 958d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 959d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9601795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9611795a4d1SJed Brown 962e28ce29aSPatrick Sanan Output Parameters: 9631795a4d1SJed Brown + r1 - memory allocated in first chunk 9641795a4d1SJed Brown . r2 - memory allocated in second chunk 9651795a4d1SJed Brown . r3 - memory allocated in third chunk 9661795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9671795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9681795a4d1SJed Brown 9691795a4d1SJed Brown Level: developer 9701795a4d1SJed Brown 9711795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9721795a4d1SJed Brown 9731795a4d1SJed Brown Concepts: memory allocation 9741795a4d1SJed Brown 9751795a4d1SJed Brown M*/ 9762553b7ecSJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 977d382aafbSBarry Smith 978d382aafbSBarry Smith /*MC 979dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 980d382aafbSBarry Smith 981d382aafbSBarry Smith Synopsis: 982aaa7dc30SBarry Smith #include <petscsys.h> 983dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 984d382aafbSBarry Smith 985d382aafbSBarry Smith Not Collective 986d382aafbSBarry Smith 987e28ce29aSPatrick Sanan Input Parameters: 988d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 989d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 990d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 991d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 992d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 993dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 994d382aafbSBarry Smith 995e28ce29aSPatrick Sanan Output Parameteasr: 996d382aafbSBarry Smith + r1 - memory allocated in first chunk 997d382aafbSBarry Smith . r2 - memory allocated in second chunk 998d382aafbSBarry Smith . r3 - memory allocated in third chunk 999d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1000d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1001d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith Level: developer 1004d382aafbSBarry Smith 10051795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith Concepts: memory allocation 1008d382aafbSBarry Smith 1009d382aafbSBarry Smith M*/ 10102553b7ecSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith /*MC 10131795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1014d382aafbSBarry Smith 1015eca87e8dSBarry Smith Synopsis: 1016aaa7dc30SBarry Smith #include <petscsys.h> 10171795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1018eca87e8dSBarry Smith 1019eca87e8dSBarry Smith Not Collective 1020eca87e8dSBarry Smith 1021e28ce29aSPatrick Sanan Input Parameters: 1022d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1023d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1024d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1025d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1026d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10271795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10281795a4d1SJed Brown 1029e28ce29aSPatrick Sanan Output Parameters: 10301795a4d1SJed Brown + r1 - memory allocated in first chunk 10311795a4d1SJed Brown . r2 - memory allocated in second chunk 10321795a4d1SJed Brown . r3 - memory allocated in third chunk 10331795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10341795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10351795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10361795a4d1SJed Brown 10371795a4d1SJed Brown Level: developer 10381795a4d1SJed Brown 10391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10401795a4d1SJed Brown 10411795a4d1SJed Brown Concepts: memory allocation 10421795a4d1SJed Brown M*/ 10432553b7ecSJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 10441795a4d1SJed Brown 10451795a4d1SJed Brown /*MC 1046dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith Synopsis: 1049aaa7dc30SBarry Smith #include <petscsys.h> 1050dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1051d382aafbSBarry Smith 1052d382aafbSBarry Smith Not Collective 1053d382aafbSBarry Smith 1054e28ce29aSPatrick Sanan Input Parameters: 1055d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1056d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1057d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1058d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1059d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1060d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1061dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1062d382aafbSBarry Smith 1063e28ce29aSPatrick Sanan Output Parameters: 1064d382aafbSBarry Smith + r1 - memory allocated in first chunk 1065d382aafbSBarry Smith . r2 - memory allocated in second chunk 1066d382aafbSBarry Smith . r3 - memory allocated in third chunk 1067d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1068d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1069d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1070eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith Level: developer 1073d382aafbSBarry Smith 10741795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1075d382aafbSBarry Smith 1076d382aafbSBarry Smith Concepts: memory allocation 1077d382aafbSBarry Smith 1078d382aafbSBarry Smith M*/ 10792553b7ecSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 1080d382aafbSBarry Smith 1081d382aafbSBarry Smith /*MC 10821795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10831795a4d1SJed Brown 10841795a4d1SJed Brown Synopsis: 1085aaa7dc30SBarry Smith #include <petscsys.h> 10861795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10871795a4d1SJed Brown 10881795a4d1SJed Brown Not Collective 10891795a4d1SJed Brown 1090e28ce29aSPatrick Sanan Input Parameters: 10911795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10921795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10931795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10941795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10951795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10961795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10971795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10981795a4d1SJed Brown 1099e28ce29aSPatrick Sanan Output Parameters: 11001795a4d1SJed Brown + r1 - memory allocated in first chunk 11011795a4d1SJed Brown . r2 - memory allocated in second chunk 11021795a4d1SJed Brown . r3 - memory allocated in third chunk 11031795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11041795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11051795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11061795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11071795a4d1SJed Brown 11081795a4d1SJed Brown Level: developer 11091795a4d1SJed Brown 11101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11111795a4d1SJed Brown 11121795a4d1SJed Brown Concepts: memory allocation 11131795a4d1SJed Brown M*/ 11142553b7ecSJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 11151795a4d1SJed Brown 11161795a4d1SJed Brown /*MC 1117503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1118d382aafbSBarry Smith 1119eca87e8dSBarry Smith Synopsis: 1120aaa7dc30SBarry Smith #include <petscsys.h> 1121b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1122eca87e8dSBarry Smith 1123eca87e8dSBarry Smith Not Collective 1124eca87e8dSBarry Smith 1125d382aafbSBarry Smith Output Parameter: 1126b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith Level: beginner 1129d382aafbSBarry Smith 1130390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1131d382aafbSBarry Smith 1132d382aafbSBarry Smith Concepts: memory allocation 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith M*/ 1135b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1136ad0619ddSBarry Smith 1137ad0619ddSBarry Smith /*MC 1138b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1139ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1140ad0619ddSBarry Smith 1141ad0619ddSBarry Smith Synopsis: 1142aaa7dc30SBarry Smith #include <petscsys.h> 1143b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1144ad0619ddSBarry Smith 1145ad0619ddSBarry Smith Not Collective 1146ad0619ddSBarry Smith 1147ad0619ddSBarry Smith Input Parameter: 1148b00a9115SJed Brown . obj - object memory is logged to 1149ad0619ddSBarry Smith 1150ad0619ddSBarry Smith Output Parameter: 1151b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1152ad0619ddSBarry Smith 1153ad0619ddSBarry Smith Level: developer 1154ad0619ddSBarry Smith 1155390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1156ad0619ddSBarry Smith 1157ad0619ddSBarry Smith Concepts: memory allocation 1158ad0619ddSBarry Smith 1159ad0619ddSBarry Smith M*/ 1160d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith /*MC 1163d382aafbSBarry Smith PetscFree - Frees memory 1164d382aafbSBarry Smith 1165eca87e8dSBarry Smith Synopsis: 1166aaa7dc30SBarry Smith #include <petscsys.h> 1167eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1168eca87e8dSBarry Smith 1169eca87e8dSBarry Smith Not Collective 1170eca87e8dSBarry Smith 1171d382aafbSBarry Smith Input Parameter: 1172390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1173d382aafbSBarry Smith 1174d382aafbSBarry Smith Level: beginner 1175d382aafbSBarry Smith 117649d7da52SJed Brown Notes: 1177390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1178390e1bf2SBarry Smith 117949d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1180d382aafbSBarry Smith 1181390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1182d382aafbSBarry Smith 1183d382aafbSBarry Smith Concepts: memory allocation 1184d382aafbSBarry Smith 1185d382aafbSBarry Smith M*/ 118649d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith /*MC 1189d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1190d382aafbSBarry Smith 1191eca87e8dSBarry Smith Synopsis: 1192aaa7dc30SBarry Smith #include <petscsys.h> 1193eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1194eca87e8dSBarry Smith 1195eca87e8dSBarry Smith Not Collective 1196eca87e8dSBarry Smith 1197e28ce29aSPatrick Sanan Input Parameters: 1198d382aafbSBarry Smith + memory1 - memory to free 1199d382aafbSBarry Smith - memory2 - 2nd memory to free 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith Level: developer 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1206d382aafbSBarry Smith 1207d382aafbSBarry Smith Concepts: memory allocation 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith M*/ 1210ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith /*MC 1213d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1214d382aafbSBarry Smith 1215eca87e8dSBarry Smith Synopsis: 1216aaa7dc30SBarry Smith #include <petscsys.h> 1217eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1218eca87e8dSBarry Smith 1219eca87e8dSBarry Smith Not Collective 1220eca87e8dSBarry Smith 1221e28ce29aSPatrick Sanan Input Parameters: 1222d382aafbSBarry Smith + memory1 - memory to free 1223d382aafbSBarry Smith . memory2 - 2nd memory to free 1224d382aafbSBarry Smith - memory3 - 3rd memory to free 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith Level: developer 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith Concepts: memory allocation 1233d382aafbSBarry Smith 1234d382aafbSBarry Smith M*/ 1235ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1236d382aafbSBarry Smith 1237d382aafbSBarry Smith /*MC 1238d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1239d382aafbSBarry Smith 1240eca87e8dSBarry Smith Synopsis: 1241aaa7dc30SBarry Smith #include <petscsys.h> 1242eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1243eca87e8dSBarry Smith 1244eca87e8dSBarry Smith Not Collective 1245eca87e8dSBarry Smith 1246e28ce29aSPatrick Sanan Input Parameters: 1247d382aafbSBarry Smith + m1 - memory to free 1248d382aafbSBarry Smith . m2 - 2nd memory to free 1249d382aafbSBarry Smith . m3 - 3rd memory to free 1250d382aafbSBarry Smith - m4 - 4th memory to free 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith Level: developer 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith Concepts: memory allocation 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith M*/ 1261ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith /*MC 1264d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1265d382aafbSBarry Smith 1266eca87e8dSBarry Smith Synopsis: 1267aaa7dc30SBarry Smith #include <petscsys.h> 1268eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1269eca87e8dSBarry Smith 1270eca87e8dSBarry Smith Not Collective 1271eca87e8dSBarry Smith 1272e28ce29aSPatrick Sanan Input Parameters: 1273d382aafbSBarry Smith + m1 - memory to free 1274d382aafbSBarry Smith . m2 - 2nd memory to free 1275d382aafbSBarry Smith . m3 - 3rd memory to free 1276d382aafbSBarry Smith . m4 - 4th memory to free 1277d382aafbSBarry Smith - m5 - 5th memory to free 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith Level: developer 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Concepts: memory allocation 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith M*/ 1288ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith /*MC 1291d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1292d382aafbSBarry Smith 1293eca87e8dSBarry Smith Synopsis: 1294aaa7dc30SBarry Smith #include <petscsys.h> 1295eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1296eca87e8dSBarry Smith 1297eca87e8dSBarry Smith Not Collective 1298eca87e8dSBarry Smith 1299e28ce29aSPatrick Sanan Input Parameters: 1300d382aafbSBarry Smith + m1 - memory to free 1301d382aafbSBarry Smith . m2 - 2nd memory to free 1302d382aafbSBarry Smith . m3 - 3rd memory to free 1303d382aafbSBarry Smith . m4 - 4th memory to free 1304d382aafbSBarry Smith . m5 - 5th memory to free 1305d382aafbSBarry Smith - m6 - 6th memory to free 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith 1308d382aafbSBarry Smith Level: developer 1309d382aafbSBarry Smith 1310d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1311d382aafbSBarry Smith 1312d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1313d382aafbSBarry Smith 1314d382aafbSBarry Smith Concepts: memory allocation 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith M*/ 1317ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1318d382aafbSBarry Smith 1319d382aafbSBarry Smith /*MC 1320d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1321d382aafbSBarry Smith 1322eca87e8dSBarry Smith Synopsis: 1323aaa7dc30SBarry Smith #include <petscsys.h> 1324eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1325eca87e8dSBarry Smith 1326eca87e8dSBarry Smith Not Collective 1327eca87e8dSBarry Smith 1328e28ce29aSPatrick Sanan Input Parameters: 1329d382aafbSBarry Smith + m1 - memory to free 1330d382aafbSBarry Smith . m2 - 2nd memory to free 1331d382aafbSBarry Smith . m3 - 3rd memory to free 1332d382aafbSBarry Smith . m4 - 4th memory to free 1333d382aafbSBarry Smith . m5 - 5th memory to free 1334d382aafbSBarry Smith . m6 - 6th memory to free 1335d382aafbSBarry Smith - m7 - 7th memory to free 1336d382aafbSBarry Smith 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith Level: developer 1339d382aafbSBarry Smith 1340d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1341d382aafbSBarry Smith 1342d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1343d382aafbSBarry Smith PetscMalloc7() 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith Concepts: memory allocation 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith M*/ 1348ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1349d382aafbSBarry Smith 1350ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1351ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1352efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1353efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13543221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1355ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 1356efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1358d382aafbSBarry Smith 1359d382aafbSBarry Smith /* 1360c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1361c1706be6SHong Zhang */ 1362c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1363c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1364c1706be6SHong Zhang 1365c1706be6SHong Zhang /* 1366a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1367a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1368a5057860SBarry Smith timing etc. 1369a5057860SBarry Smith */ 1370a5057860SBarry Smith typedef double PetscLogDouble; 1371a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1372a5057860SBarry Smith 1373a5057860SBarry Smith /* 137466d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1375d382aafbSBarry Smith */ 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13810acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1382efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1384574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1386d382aafbSBarry Smith 1387d382aafbSBarry Smith /*E 1388d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1389d382aafbSBarry Smith 1390d382aafbSBarry Smith Level: beginner 1391d382aafbSBarry Smith 1392e8a7dd7fSJed Brown Notes: 1393e8a7dd7fSJed Brown Use of this should be avoided if one can directly use MPI_Datatype instead. 139494fbd55eSBarry Smith 1395e28ce29aSPatrick Sanan Developer comment: 1396e28ce29aSPatrick Sanan It would be nice if we could always just use MPI Datatypes, why can we not? 1397d382aafbSBarry Smith 1398d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1399d382aafbSBarry Smith PetscDataTypeGetSize() 1400d382aafbSBarry Smith 1401d382aafbSBarry Smith E*/ 1402d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1403570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14046a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1405d382aafbSBarry Smith 1406d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1407d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1408d382aafbSBarry Smith #else 1409ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1410d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 141159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141259a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1413570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1414570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1415d382aafbSBarry Smith #else 1416d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1417d382aafbSBarry Smith #endif 1418d382aafbSBarry Smith #endif 1419ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1420d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 142159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142259a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1423570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1424570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1425d382aafbSBarry Smith #else 1426d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1427d382aafbSBarry Smith #endif 1428d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1429d382aafbSBarry Smith 1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14338e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1434d382aafbSBarry Smith 1435d382aafbSBarry Smith /* 1436d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1437d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1438d382aafbSBarry Smith functionality and/or error checking. 1439d382aafbSBarry Smith */ 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1444d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1452a126751eSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrlcat(char[],const char[],size_t); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14562f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14612c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 146447340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14656fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14666991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14676991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1469d382aafbSBarry Smith 1470573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1471573b0fb4SBarry Smith 1472d382aafbSBarry Smith /*S 1473d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1474d382aafbSBarry Smith 1475d382aafbSBarry Smith Level: intermediate 1476d382aafbSBarry Smith 1477d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1478d382aafbSBarry Smith S*/ 1479d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1480d382aafbSBarry Smith 1481014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 14848e81d068SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscStrInList(const char[],const char[],char,PetscBool*); 1485d382aafbSBarry Smith 1486a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1487a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1488a53986e1SJed Brown 1489d382aafbSBarry Smith /* 1490d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1491d382aafbSBarry Smith */ 1492367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1493570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1494014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14952414b3c7SJed Brown #else 14962414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14972414b3c7SJed Brown #endif 1498570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1499014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1500014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1501d9822059SBarry Smith #else 1502d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1503d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1504d9822059SBarry Smith #endif 1505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1506d382aafbSBarry Smith 1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1509eb3f98d2SBarry Smith 1510d382aafbSBarry Smith /*S 1511d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1512d382aafbSBarry Smith 1513d382aafbSBarry Smith Level: beginner 1514d382aafbSBarry Smith 1515e28ce29aSPatrick Sanan Note: 1516e28ce29aSPatrick Sanan This is the base class from which all PETSc objects are derived from. 1517d382aafbSBarry Smith 15182b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1519d382aafbSBarry Smith S*/ 1520d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1521d382aafbSBarry Smith 1522270bf2e7SJed Brown /*MC 1523127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1524127c8a3bSJed Brown 1525127c8a3bSJed Brown Level: developer 1526127c8a3bSJed Brown 1527e28ce29aSPatrick Sanan Notes: 1528e28ce29aSPatrick Sanan Unlike pointer values, object ids are never reused. 1529127c8a3bSJed Brown 1530127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1531127c8a3bSJed Brown M*/ 153206e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 153306e41213SSatish Balay typedef int PetscObjectId; 153406e41213SSatish Balay #else 1535bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 153606e41213SSatish Balay #endif 1537127c8a3bSJed Brown 1538127c8a3bSJed Brown /*MC 1539270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1540270bf2e7SJed Brown 1541270bf2e7SJed Brown Level: developer 1542270bf2e7SJed Brown 1543270bf2e7SJed Brown Notes: 1544270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1545270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1546270bf2e7SJed Brown 15478dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1548270bf2e7SJed Brown M*/ 154906e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 155006e41213SSatish Balay typedef int PetscObjectState; 155106e41213SSatish Balay #else 1552bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 155306e41213SSatish Balay #endif 1554270bf2e7SJed Brown 1555d382aafbSBarry Smith /*S 1556140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1557d382aafbSBarry Smith by string name 1558d382aafbSBarry Smith 1559d382aafbSBarry Smith Level: advanced 1560d382aafbSBarry Smith 1561140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1562d382aafbSBarry Smith S*/ 1563140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1564d382aafbSBarry Smith 1565d382aafbSBarry Smith /*E 1566d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1567d382aafbSBarry Smith 1568d382aafbSBarry Smith Level: beginner 1569d382aafbSBarry Smith 15701cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15711cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15721cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15731cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15741cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1575d382aafbSBarry Smith 1576d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1577d382aafbSBarry Smith E*/ 1578d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1579d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1580d6a4318aSJed Brown 1581639ff905SBarry Smith /* 1582639ff905SBarry Smith Defines PETSc error handling. 1583639ff905SBarry Smith */ 1584639ff905SBarry Smith #include <petscerror.h> 1585d382aafbSBarry Smith 15860700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1587014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1588014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1590d382aafbSBarry Smith 1591d382aafbSBarry Smith /* 1592d382aafbSBarry Smith Routines that get memory usage information from the OS 1593d382aafbSBarry Smith */ 1594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1597b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1598d382aafbSBarry Smith 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1601d382aafbSBarry Smith 1602d382aafbSBarry Smith /* 1603d382aafbSBarry Smith Initialization of PETSc 1604d382aafbSBarry Smith */ 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1615d382aafbSBarry Smith 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1617607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1618d382aafbSBarry Smith 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1623d382aafbSBarry Smith 1624d382aafbSBarry Smith /* 1625d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16262981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1627d382aafbSBarry Smith */ 1628638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1629638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1630638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1631d382aafbSBarry Smith 1632d382aafbSBarry Smith /* 1633d382aafbSBarry Smith Functions that can act on any PETSc object. 1634d382aafbSBarry Smith */ 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1653bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1654bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16570eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16580eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1660d382aafbSBarry Smith 1661665c2dedSJed Brown #include <petscviewertypes.h> 1662639ff905SBarry Smith #include <petscoptions.h> 1663639ff905SBarry Smith 16640633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16650633abcbSJed Brown 1666639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1667c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1668dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1669639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16700005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16710005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1679685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 16824099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1686d382aafbSBarry Smith 1687e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16887aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1689e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1690e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1691e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1692e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1693e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1694e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1695e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1696e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1697e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 169815681b3cSBarry Smith 1699ec7429eaSBarry Smith #else 17007aab2a10SBarry Smith #define PetscSAWsBlock() 0 1701e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1702e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1703e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1704e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1705e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1706e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1707e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1708e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1709e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 171015681b3cSBarry Smith 1711ec7429eaSBarry Smith #endif 1712b90c6cbeSBarry Smith 17137d5d4d99SBarry Smith typedef void* PetscDLHandle; 1714e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 171582b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171682b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17187d5d4d99SBarry Smith 17195fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1720a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17215fe58b6fSBarry Smith #endif 17227eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1723a64a8e02SBarry Smith 1724d382aafbSBarry Smith /*S 1725140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1726d382aafbSBarry Smith 17271d0fab5eSBarry Smith Level: developer 1728d382aafbSBarry Smith 1729e28ce29aSPatrick Sanan Notes: 1730e28ce29aSPatrick Sanan Used by PetscObjectCompose() and PetscObjectQuery() 17311d0fab5eSBarry Smith 1732140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1733d382aafbSBarry Smith S*/ 1734140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1735d382aafbSBarry Smith 1736140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1737140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1738140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1740140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1741140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1742d382aafbSBarry Smith 1743d382aafbSBarry Smith /* 1744503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1745d382aafbSBarry Smith link libraries that will be loaded as needed. 1746d382aafbSBarry Smith */ 1747a240a19fSJed Brown 1748a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1749a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1750140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17511c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17521c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1753140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1754140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1755140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1756140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1757d382aafbSBarry Smith 1758d382aafbSBarry Smith /*S 1759d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1760d382aafbSBarry Smith 1761d382aafbSBarry Smith Level: advanced 1762d382aafbSBarry Smith 1763d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1764d382aafbSBarry Smith S*/ 1765d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1766014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1774d382aafbSBarry Smith 1775d382aafbSBarry Smith /* 1776d382aafbSBarry Smith Useful utility routines 1777d382aafbSBarry Smith */ 1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 17846ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxInt(MPI_Comm,PetscInt[],PetscInt[]); 17856ba4152bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxReal(MPI_Comm,PetscReal[],PetscReal[]); 1786d382aafbSBarry Smith 1787503cfb0cSBarry Smith /* 1788ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1789503cfb0cSBarry Smith 1790e28ce29aSPatrick Sanan Notes: 1791e28ce29aSPatrick Sanan This is useful in cases like 1792503cfb0cSBarry Smith $ int *a; 1793ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17941cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1795503cfb0cSBarry Smith */ 1796d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1797503cfb0cSBarry Smith 1798d382aafbSBarry Smith /*MC 1799d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1800d382aafbSBarry Smith 1801d382aafbSBarry Smith Synopsis: 1802aaa7dc30SBarry Smith #include <petscsys.h> 1803d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1804d382aafbSBarry Smith 1805eca87e8dSBarry Smith Not Collective 1806eca87e8dSBarry Smith 1807d382aafbSBarry Smith Input Parameters: 1808d382aafbSBarry Smith . format - the usual printf() format string 1809d382aafbSBarry Smith 1810d382aafbSBarry Smith Level: developer 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith Fortran Note: 1813d382aafbSBarry Smith This routine is not supported in Fortran. 1814d382aafbSBarry Smith 1815d382aafbSBarry Smith Concepts: help messages^printing 1816d382aafbSBarry Smith Concepts: printing^help messages 1817d382aafbSBarry Smith 1818d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1819d382aafbSBarry Smith M*/ 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1821d382aafbSBarry Smith 1822fcfd50ebSBarry Smith /* 1823fcfd50ebSBarry Smith Defines PETSc profiling. 1824fcfd50ebSBarry Smith */ 18252c8e378dSBarry Smith #include <petsclog.h> 1826fcfd50ebSBarry Smith 1827fcfd50ebSBarry Smith /* 1828fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1829fcfd50ebSBarry Smith */ 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1837fcfd50ebSBarry Smith 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1841d382aafbSBarry Smith 1842d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1844016831caSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*); 184574ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1846d382aafbSBarry Smith #endif 1847d382aafbSBarry Smith 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18500ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1855d382aafbSBarry Smith 1856d382aafbSBarry Smith /*S 1857d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1858d382aafbSBarry Smith 1859d382aafbSBarry Smith Level: advanced 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1862d382aafbSBarry Smith S*/ 1863014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1864d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1870b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1871d382aafbSBarry Smith 1872d382aafbSBarry Smith /* 1873d382aafbSBarry Smith For use in debuggers 1874d382aafbSBarry Smith */ 1875014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1876014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1877014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1880d382aafbSBarry Smith 1881a663daf8SBarry Smith #include <stddef.h> 1882a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1883d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1884d382aafbSBarry Smith #include <stdlib.h> 1885d382aafbSBarry Smith #endif 18866c7e564aSBarry Smith 18874a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1888d382aafbSBarry Smith #include <xmmintrin.h> 1889d382aafbSBarry Smith #endif 1890d382aafbSBarry Smith 1891d382aafbSBarry Smith /*@C 1892d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1893d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1894d382aafbSBarry Smith PetscMemmove() in that case. 1895d382aafbSBarry Smith 1896d382aafbSBarry Smith Not Collective 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith Input Parameters: 1899d382aafbSBarry Smith + b - pointer to initial memory space 1900d382aafbSBarry Smith - n - length (in bytes) of space to copy 1901d382aafbSBarry Smith 1902d382aafbSBarry Smith Output Parameter: 1903d382aafbSBarry Smith . a - pointer to copy space 1904d382aafbSBarry Smith 1905d382aafbSBarry Smith Level: intermediate 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith Compile Option: 1908d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1909d382aafbSBarry Smith for memory copies on double precision values. 1910d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1911d382aafbSBarry Smith for memory copies on double precision values. 1912d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1913d382aafbSBarry Smith for memory copies on double precision values. 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith Note: 1916d382aafbSBarry Smith This routine is analogous to memcpy(). 1917d382aafbSBarry Smith 19181fd49c25SBarry Smith Not available from Fortran 19191fd49c25SBarry Smith 1920f5f57ec0SBarry Smith Developer Note: this is inlined for fastest performance 1921f5f57ec0SBarry Smith 1922d382aafbSBarry Smith Concepts: memory^copying 1923d382aafbSBarry Smith Concepts: copying^memory 1924d382aafbSBarry Smith 19251fd49c25SBarry Smith .seealso: PetscMemmove(), PetscStrallocpy() 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith @*/ 19287087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1929d382aafbSBarry Smith { 1930d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1931c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1932c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1933a7e36092SMatthew G Knepley PetscFunctionBegin; 1934e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1935e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1936a7e36092SMatthew G Knepley #else 1937d382aafbSBarry Smith PetscFunctionBegin; 1938a7e36092SMatthew G Knepley #endif 1939a47a537aSLisandro Dalcin if (a != b && n > 0) { 1940d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1941e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1942d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1943d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1944d382aafbSBarry Smith #endif 1945d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1946c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1947d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1948d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1949c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1950c5df96a5SBarry Smith PetscErrorCode ierr; 1951c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19528b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1953d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1954d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1955d382aafbSBarry Smith #else 1956d382aafbSBarry Smith size_t i; 1957d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1958d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1959d382aafbSBarry Smith #endif 1960d382aafbSBarry Smith } else { 1961d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1962d382aafbSBarry Smith } 1963d382aafbSBarry Smith #else 1964d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1965d382aafbSBarry Smith #endif 1966d382aafbSBarry Smith } 1967d382aafbSBarry Smith PetscFunctionReturn(0); 1968d382aafbSBarry Smith } 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith /*@C 1971d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1972d382aafbSBarry Smith 1973d382aafbSBarry Smith Not Collective 1974d382aafbSBarry Smith 1975d382aafbSBarry Smith Input Parameters: 1976d382aafbSBarry Smith + a - pointer to beginning memory location 1977d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith Level: intermediate 1980d382aafbSBarry Smith 1981d382aafbSBarry Smith Compile Option: 1982d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1983d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1984d382aafbSBarry Smith 19851fd49c25SBarry Smith Not available from Fortran 19861fd49c25SBarry Smith 1987503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1988503cfb0cSBarry Smith 1989d382aafbSBarry Smith Concepts: memory^zeroing 1990d382aafbSBarry Smith Concepts: zeroing^memory 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith .seealso: PetscMemcpy() 1993d382aafbSBarry Smith @*/ 19947087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1995d382aafbSBarry Smith { 1996d382aafbSBarry Smith if (n > 0) { 1997d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1998e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1999d382aafbSBarry Smith #endif 2000d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2001d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2002d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2003d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2004d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2005d382aafbSBarry Smith } else { 2006d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2007d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2008d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2009d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2010d382aafbSBarry Smith } else { 2011d382aafbSBarry Smith #endif 2012d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2013d382aafbSBarry Smith bzero((char *)a,n); 2014d382aafbSBarry Smith #else 2015d382aafbSBarry Smith memset((char*)a,0,n); 2016d382aafbSBarry Smith #endif 2017d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2018d382aafbSBarry Smith } 2019d382aafbSBarry Smith #endif 2020d382aafbSBarry Smith } 2021d382aafbSBarry Smith return 0; 2022d382aafbSBarry Smith } 2023d382aafbSBarry Smith 2024d382aafbSBarry Smith /*MC 2025d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2026d382aafbSBarry Smith 2027eca87e8dSBarry Smith Synopsis: 2028aaa7dc30SBarry Smith #include <petscsys.h> 2029eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2030eca87e8dSBarry Smith 2031d382aafbSBarry Smith Not Collective 2032d382aafbSBarry Smith 2033d382aafbSBarry Smith Input Parameters: 2034d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2035d382aafbSBarry Smith . n - number of elements to fetch 2036d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203750d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2038d382aafbSBarry Smith 2039d382aafbSBarry Smith Level: developer 2040d382aafbSBarry Smith 2041d382aafbSBarry Smith Notes: 2042d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2043d382aafbSBarry Smith 204450d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204550d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204650d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204763cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 204863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 204963cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2050d382aafbSBarry Smith 2051d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2052d382aafbSBarry Smith address). 2053d382aafbSBarry Smith 2054d382aafbSBarry Smith Concepts: memory 2055d382aafbSBarry Smith M*/ 2056d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2057d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2058d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2059d382aafbSBarry Smith } while (0) 2060d382aafbSBarry Smith 2061d382aafbSBarry Smith /* 2062d382aafbSBarry Smith Determine if some of the kernel computation routines use 2063d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2064d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2065d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2066e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2067d382aafbSBarry Smith */ 2068d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2071d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2072d382aafbSBarry Smith #endif 2073d382aafbSBarry Smith 20745a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20755a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2076d382aafbSBarry Smith #endif 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2079d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2080d382aafbSBarry Smith #endif 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2083d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2084d382aafbSBarry Smith #endif 2085d382aafbSBarry Smith 2086d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2087d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2088d382aafbSBarry Smith #endif 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2091d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2092d382aafbSBarry Smith #endif 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2095d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2096d382aafbSBarry Smith #endif 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2099d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2100d382aafbSBarry Smith #endif 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2103d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2104d382aafbSBarry Smith #endif 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2107d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2108d382aafbSBarry Smith #endif 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2111d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2115d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2116d382aafbSBarry Smith #endif 2117d382aafbSBarry Smith 2118d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2119d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2120d382aafbSBarry Smith #endif 2121d382aafbSBarry Smith 2122d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2123d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2124d382aafbSBarry Smith #endif 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith #endif 2127d382aafbSBarry Smith 2128d382aafbSBarry Smith /* 2129d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2130d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2131d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2132d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2133d382aafbSBarry Smith ugly extern "C" {} wrappers. 2134d382aafbSBarry Smith */ 2135d382aafbSBarry Smith #if defined(__cplusplus) 2136d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2137d382aafbSBarry Smith #define EXTERN_C_END } 2138d382aafbSBarry Smith #else 2139d382aafbSBarry Smith #define EXTERN_C_BEGIN 2140d382aafbSBarry Smith #define EXTERN_C_END 2141d382aafbSBarry Smith #endif 2142d382aafbSBarry Smith 2143d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2144d382aafbSBarry Smith 2145d382aafbSBarry Smith /*MC 2146d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2147d382aafbSBarry Smith communication 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith Level: beginner 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2154d382aafbSBarry Smith M*/ 2155d382aafbSBarry Smith 2156d382aafbSBarry Smith /*MC 2157d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2158390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2159390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2160390e1bf2SBarry Smith 2161e28ce29aSPatrick Sanan Notes: 2162e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. They will automatically work correctly regardless of the size of PetscScalar. 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith Level: beginner 2165d382aafbSBarry Smith 216659479656SBarry Smith .seealso: PetscReal, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PetscRealPart(), PetscImaginaryPart() 2167d382aafbSBarry Smith M*/ 2168d382aafbSBarry Smith 2169d382aafbSBarry Smith /*MC 21708619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21718619c96cSJed Brown 21728619c96cSJed Brown Synopsis: 21738619c96cSJed Brown #include <petscsys.h> 21748619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21758619c96cSJed Brown 2176e28ce29aSPatrick Sanan Notes: 2177e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2178e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscComplex. 2179390e1bf2SBarry Smith 2180390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2181390e1bf2SBarry Smith 21828cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21838619c96cSJed Brown 2184e28ce29aSPatrick Sanan Level: beginner 2185e28ce29aSPatrick Sanan 2186e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 21878619c96cSJed Brown M*/ 21888619c96cSJed Brown 21898619c96cSJed Brown /*MC 2190d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2191d382aafbSBarry Smith 2192e28ce29aSPatrick Sanan 2193e28ce29aSPatrick Sanan Notes: 2194e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX, etc. for operations. 2195e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscReal. 2196e28ce29aSPatrick Sanan 2197e28ce29aSPatrick Sanan See PetscScalar for details on how to ./configure the size of PetscReal. 2198e28ce29aSPatrick Sanan 2199d382aafbSBarry Smith Level: beginner 2200d382aafbSBarry Smith 2201e28ce29aSPatrick Sanan .seealso: PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2202d382aafbSBarry Smith M*/ 2203d382aafbSBarry Smith 2204d382aafbSBarry Smith /*MC 2205d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2206d382aafbSBarry Smith 2207e28ce29aSPatrick Sanan Notes: 2208e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalar values, pass this value. 2209e28ce29aSPatrick Sanan 2210d382aafbSBarry Smith Level: beginner 2211d382aafbSBarry Smith 2212e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_COMPLEX, MPIU_INT 2213e28ce29aSPatrick Sanan M*/ 2214d382aafbSBarry Smith 2215e28ce29aSPatrick Sanan /*MC 2216e28ce29aSPatrick Sanan MPIU_COMPLEX - MPI datatype corresponding to PetscComplex 2217e28ce29aSPatrick Sanan 2218e28ce29aSPatrick Sanan Notes: 2219e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscComplex or array of PetscComplex values, pass this value. 2220e28ce29aSPatrick Sanan 2221e28ce29aSPatrick Sanan Level: beginner 2222e28ce29aSPatrick Sanan 2223e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 2224e28ce29aSPatrick Sanan M*/ 2225e28ce29aSPatrick Sanan 2226e28ce29aSPatrick Sanan /*MC 2227e28ce29aSPatrick Sanan MPIU_REAL - MPI datatype corresponding to PetscReal 2228e28ce29aSPatrick Sanan 2229e28ce29aSPatrick Sanan Notes: 2230e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscReal or array of PetscReal values, pass this value. 2231e28ce29aSPatrick Sanan 2232e28ce29aSPatrick Sanan Level: beginner 2233e28ce29aSPatrick Sanan 2234e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2235d382aafbSBarry Smith M*/ 2236d382aafbSBarry Smith 2237d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2238d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2240014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2241d382aafbSBarry Smith #else 2242d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2243d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2244d382aafbSBarry Smith #endif 2245d382aafbSBarry Smith #endif 2246d382aafbSBarry Smith 2247d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2248d382aafbSBarry Smith 2249d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2250d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2251d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2252d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2253d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2254d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2255d382aafbSBarry Smith 225661b0d812SBarry Smith /*@C 225761b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 225861b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 225961b0d812SBarry Smith 226061b0d812SBarry Smith Not Collective 226161b0d812SBarry Smith 226261b0d812SBarry Smith Input Parameter: 226361b0d812SBarry Smith . a - the PetscInt value 226461b0d812SBarry Smith 226561b0d812SBarry Smith Output Parameter: 226661b0d812SBarry Smith . b - the resulting PetscBLASInt value 226761b0d812SBarry Smith 226861b0d812SBarry Smith Level: advanced 226961b0d812SBarry Smith 22701fd49c25SBarry Smith Not available from Fortran 22711fd49c25SBarry Smith 227261b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 227361b0d812SBarry Smith @*/ 2274c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2275c5df96a5SBarry Smith { 2276c5df96a5SBarry Smith PetscFunctionBegin; 2277ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2278c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2279c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2280c5df96a5SBarry Smith #endif 2281c5df96a5SBarry Smith PetscFunctionReturn(0); 2282c5df96a5SBarry Smith } 2283c5df96a5SBarry Smith 228461b0d812SBarry Smith /*@C 228561b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 228661b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 228761b0d812SBarry Smith 228861b0d812SBarry Smith Not Collective 228961b0d812SBarry Smith 229061b0d812SBarry Smith Input Parameter: 229161b0d812SBarry Smith . a - the PetscInt value 229261b0d812SBarry Smith 229361b0d812SBarry Smith Output Parameter: 229461b0d812SBarry Smith . b - the resulting PetscMPIInt value 229561b0d812SBarry Smith 229661b0d812SBarry Smith Level: advanced 229761b0d812SBarry Smith 22981fd49c25SBarry Smith Not available from Fortran 22991fd49c25SBarry Smith 230061b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 230161b0d812SBarry Smith @*/ 23024dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 23034dc2109aSBarry Smith { 23044dc2109aSBarry Smith PetscFunctionBegin; 2305ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 23064dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 23074dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 23084dc2109aSBarry Smith #endif 23094dc2109aSBarry Smith PetscFunctionReturn(0); 23104dc2109aSBarry Smith } 23114dc2109aSBarry Smith 2312bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 23132f18eb33SBarry Smith 23142f18eb33SBarry Smith /*@C 23152f18eb33SBarry Smith 23162f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 23172f18eb33SBarry Smith 23182f18eb33SBarry Smith Not Collective 23192f18eb33SBarry Smith 23202f18eb33SBarry Smith Input Parameter: 23212f18eb33SBarry Smith + a - the PetscReal value 23222f18eb33SBarry Smith - b - the second value 23232f18eb33SBarry Smith 2324390e1bf2SBarry Smith Returns: 2325390e1bf2SBarry Smith the result as a PetscInt value 23262f18eb33SBarry Smith 2327bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23282f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23292f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23302f18eb33SBarry Smith 2331e28ce29aSPatrick Sanan Developers Note: 2332e28ce29aSPatrick Sanan We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23332f18eb33SBarry Smith 23342f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23352f18eb33SBarry Smith 23361fd49c25SBarry Smith Not available from Fortran 23371fd49c25SBarry Smith 23382f18eb33SBarry Smith Level: advanced 23392f18eb33SBarry Smith 2340390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23412f18eb33SBarry Smith @*/ 23422f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23432f18eb33SBarry Smith { 2344bafee8b4SSatish Balay PetscInt64 r; 23452f18eb33SBarry Smith 2346bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23472f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23482f18eb33SBarry Smith return (PetscInt) r; 23492f18eb33SBarry Smith } 23502f18eb33SBarry Smith 23512f18eb33SBarry Smith /*@C 23522f18eb33SBarry Smith 23532f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23542f18eb33SBarry Smith 23552f18eb33SBarry Smith Not Collective 23562f18eb33SBarry Smith 23572f18eb33SBarry Smith Input Parameter: 23582f18eb33SBarry Smith + a - the PetscInt value 23592f18eb33SBarry Smith - b - the second value 23602f18eb33SBarry Smith 2361390e1bf2SBarry Smith Returns: 2362390e1bf2SBarry Smith the result as a PetscInt value 23632f18eb33SBarry Smith 2364bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23652f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23662f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23672f18eb33SBarry Smith 23681fd49c25SBarry Smith Not available from Fortran 23691fd49c25SBarry Smith 23702f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23712f18eb33SBarry Smith 23722f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23732f18eb33SBarry Smith 23742f18eb33SBarry Smith Level: advanced 23752f18eb33SBarry Smith 2376390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23772f18eb33SBarry Smith @*/ 23782f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23792f18eb33SBarry Smith { 2380bafee8b4SSatish Balay PetscInt64 r; 23812f18eb33SBarry Smith 2382bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23832f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23842f18eb33SBarry Smith return (PetscInt) r; 23852f18eb33SBarry Smith } 23862f18eb33SBarry Smith 2387f91af8c7SBarry Smith /*@C 2388f91af8c7SBarry Smith 2389f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2390f91af8c7SBarry Smith 2391f91af8c7SBarry Smith Not Collective 2392f91af8c7SBarry Smith 2393f91af8c7SBarry Smith Input Parameter: 2394f91af8c7SBarry Smith + a - the PetscInt value 2395f91af8c7SBarry Smith - b - the second value 2396f91af8c7SBarry Smith 2397390e1bf2SBarry Smith Returns: 2398390e1bf2SBarry Smith the result as a PetscInt value 2399f91af8c7SBarry Smith 2400bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2401f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2402f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2403f91af8c7SBarry Smith 2404f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2405f91af8c7SBarry Smith 2406f5f57ec0SBarry Smith Not available from Fortran 2407f5f57ec0SBarry Smith 2408f91af8c7SBarry Smith Level: advanced 2409f91af8c7SBarry Smith 2410390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2411f91af8c7SBarry Smith @*/ 2412f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2413f91af8c7SBarry Smith { 2414bafee8b4SSatish Balay PetscInt64 r; 2415f91af8c7SBarry Smith 2416bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2417f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2418f91af8c7SBarry Smith return (PetscInt) r; 2419f91af8c7SBarry Smith } 2420f91af8c7SBarry Smith 24212f18eb33SBarry Smith /*@C 24222f18eb33SBarry Smith 24232f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 24242f18eb33SBarry Smith 24252f18eb33SBarry Smith Not Collective 24262f18eb33SBarry Smith 24272f18eb33SBarry Smith Input Parameter: 24282f18eb33SBarry Smith + a - the PetscInt value 24292f18eb33SBarry Smith - b - the second value 24302f18eb33SBarry Smith 24312f18eb33SBarry Smith Output Parameter:ma 2432390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24332f18eb33SBarry Smith 2434bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24352f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24362f18eb33SBarry Smith 2437f5f57ec0SBarry Smith Not available from Fortran 2438f5f57ec0SBarry Smith 2439220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24402f18eb33SBarry Smith 24412f18eb33SBarry Smith Level: advanced 24422f18eb33SBarry Smith 2443220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 24442f18eb33SBarry Smith @*/ 24452f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24462f18eb33SBarry Smith { 2447bafee8b4SSatish Balay PetscInt64 r; 24482f18eb33SBarry Smith 24492f18eb33SBarry Smith PetscFunctionBegin; 2450bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24512f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24522f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24532f18eb33SBarry Smith #endif 2454f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2455f91af8c7SBarry Smith PetscFunctionReturn(0); 2456f91af8c7SBarry Smith } 2457f91af8c7SBarry Smith 2458f91af8c7SBarry Smith /*@C 2459f91af8c7SBarry Smith 2460fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2461f91af8c7SBarry Smith 2462f91af8c7SBarry Smith Not Collective 2463f91af8c7SBarry Smith 2464f91af8c7SBarry Smith Input Parameter: 2465f91af8c7SBarry Smith + a - the PetscInt value 2466f91af8c7SBarry Smith - b - the second value 2467f91af8c7SBarry Smith 2468f91af8c7SBarry Smith Output Parameter:ma 2469390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2470f91af8c7SBarry Smith 2471bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2472f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2473f91af8c7SBarry Smith 2474f5f57ec0SBarry Smith Not available from Fortran 2475f5f57ec0SBarry Smith 2476f91af8c7SBarry Smith Level: advanced 2477f91af8c7SBarry Smith 2478390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2479f91af8c7SBarry Smith @*/ 2480f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2481f91af8c7SBarry Smith { 2482bafee8b4SSatish Balay PetscInt64 r; 2483f91af8c7SBarry Smith 2484f91af8c7SBarry Smith PetscFunctionBegin; 2485bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2486f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2487f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2488f91af8c7SBarry Smith #endif 2489f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24902f18eb33SBarry Smith PetscFunctionReturn(0); 24912f18eb33SBarry Smith } 2492c5df96a5SBarry Smith 2493d382aafbSBarry Smith /* 24942981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2495d382aafbSBarry Smith */ 2496d382aafbSBarry Smith #if defined(hz) 2497d382aafbSBarry Smith #undef hz 2498d382aafbSBarry Smith #endif 2499d382aafbSBarry Smith 2500d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2501d382aafbSBarry Smith 2502d382aafbSBarry Smith 2503d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2504d382aafbSBarry Smith #include <limits.h> 2505d382aafbSBarry Smith #endif 2506d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2507d382aafbSBarry Smith #include <sys/param.h> 2508d382aafbSBarry Smith #endif 2509d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2510d382aafbSBarry Smith #include <sys/types.h> 2511d382aafbSBarry Smith #endif 2512d382aafbSBarry Smith #if defined(MAXPATHLEN) 2513d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2514d382aafbSBarry Smith #elif defined(MAX_PATH) 2515d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2516d382aafbSBarry Smith #elif defined(_MAX_PATH) 2517d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2518d382aafbSBarry Smith #else 2519d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2520d382aafbSBarry Smith #endif 2521d382aafbSBarry Smith 2522d382aafbSBarry Smith /*MC 2523d382aafbSBarry Smith 252466d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 252566d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 252666d79e26SBarry Smith 252766d79e26SBarry Smith 252866d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 252966d79e26SBarry Smith 253066d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 253166d79e26SBarry Smith 253266d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 253366d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 253466d79e26SBarry Smith 253566d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 253666d79e26SBarry Smith 253766d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 253866d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 253966d79e26SBarry Smith version number (x.y.z). 254066d79e26SBarry Smith 254166d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 254266d79e26SBarry Smith 254366d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 254466d79e26SBarry Smith 254566d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 254666d79e26SBarry Smith 254766d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 254866d79e26SBarry Smith 254966d79e26SBarry Smith Level: intermediate 255066d79e26SBarry Smith 255166d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 255266d79e26SBarry Smith 255366d79e26SBarry Smith M*/ 255466d79e26SBarry Smith 255566d79e26SBarry Smith /*MC 255666d79e26SBarry Smith 25571b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 25581b266c99SBarry Smith of every function and module definition you need something like 2559d382aafbSBarry Smith 2560d382aafbSBarry Smith $ 2561af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 25620f665fc7SPatrick Sanan $ use petscXXX 25631b266c99SBarry Smith 2564692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 25651b266c99SBarry Smith 2566d382aafbSBarry Smith $ XXX variablename 25671b266c99SBarry Smith $ type(tXXX) variablename 25681b266c99SBarry Smith 2569692afcd8SPatrick Sanan For example, 25701b266c99SBarry Smith 2571bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 25721b266c99SBarry Smith $ use petscvec 2573d382aafbSBarry Smith $ 2574692afcd8SPatrick Sanan $ Vec b 2575692afcd8SPatrick Sanan $ type(tVec) x 2576d382aafbSBarry Smith 2577d382aafbSBarry Smith Level: beginner 2578d382aafbSBarry Smith 2579d382aafbSBarry Smith M*/ 2580d382aafbSBarry Smith 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 258727710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25885f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2589d382aafbSBarry Smith 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 259122ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 259360e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2594d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25986c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 259917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 260017d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 260317df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 260539f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2607745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 260839f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 26126c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 26136c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2614e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2615d382aafbSBarry Smith 2616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2618d382aafbSBarry Smith 261976bdecfbSBarry Smith /*J 2620d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2621d382aafbSBarry Smith 2622d382aafbSBarry Smith Level: beginner 2623d382aafbSBarry Smith 2624e28ce29aSPatrick Sanan Notes: 2625e28ce29aSPatrick Sanan To use SPRNG or RANDOM123 you must have ./configure PETSc 262625ccb61fSToby Isaac with the option --download-sprng or --download-random123 2627d382aafbSBarry Smith 26288f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 262976bdecfbSBarry Smith J*/ 263019fd82e9SBarry Smith typedef const char* PetscRandomType; 2631d382aafbSBarry Smith #define PETSCRAND "rand" 2632d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2633d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2634c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 263525ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2636d382aafbSBarry Smith 2637d382aafbSBarry Smith /* Logging support */ 2638014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2639d382aafbSBarry Smith 2640607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2641d382aafbSBarry Smith 2642d382aafbSBarry Smith /*S 2643d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2644d382aafbSBarry Smith 2645d382aafbSBarry Smith Level: intermediate 2646d382aafbSBarry Smith 2647d382aafbSBarry Smith Concepts: random numbers 2648d382aafbSBarry Smith 2649d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2650d382aafbSBarry Smith S*/ 2651d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2652d382aafbSBarry Smith 2653d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2654140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2655d382aafbSBarry Smith 2656bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 265719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 265919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2660685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2662d382aafbSBarry Smith 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2672d382aafbSBarry Smith 2673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 268097540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 268197540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2682d382aafbSBarry Smith 2683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2687014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2688014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2689014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2690014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2694c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2695e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2696c891a504SStefano Zampini #endif 2697d382aafbSBarry Smith 2698d382aafbSBarry Smith /* 2699d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2700d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2701d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2702d382aafbSBarry Smith PetscBinarySeek(). 2703d382aafbSBarry Smith */ 2704d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2705d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2706d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2707d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2708d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2709d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2710d382aafbSBarry Smith 2711d382aafbSBarry Smith /*E 2712d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2713d382aafbSBarry Smith 2714d382aafbSBarry Smith Level: advanced 2715d382aafbSBarry Smith 2716d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2717d382aafbSBarry Smith E*/ 2718d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2719014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2720014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2721014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2722d382aafbSBarry Smith 2723014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2724014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2725014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2726014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2727014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2728014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2729d382aafbSBarry Smith 2730014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2731014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2732014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2733014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2734014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2735cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2736cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2737d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2738d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2739d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2740d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27416afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27426afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27436afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27446afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27456afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2746d382aafbSBarry Smith 27476145cd65SJed Brown /*E 27486145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27496145cd65SJed Brown 27506145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27516145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27526145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27536145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27546145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27551654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27561654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27576145cd65SJed Brown 27586145cd65SJed Brown Level: developer 27596145cd65SJed Brown 27606145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27616145cd65SJed Brown E*/ 27626145cd65SJed Brown typedef enum { 27636145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27646145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27651654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 276612af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27676145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27686145cd65SJed Brown } PetscBuildTwoSidedType; 27696145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27706145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27716145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27726145cd65SJed Brown 2773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2774d382aafbSBarry Smith 2775d382aafbSBarry Smith /*E 2776d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2777d382aafbSBarry Smith 2778d382aafbSBarry Smith Level: beginner 2779d382aafbSBarry Smith 2780d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2781d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2782d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2783d382aafbSBarry Smith E*/ 27846fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2785d382aafbSBarry Smith 2786d382aafbSBarry Smith /*MC 2787d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2788d382aafbSBarry Smith 2789d382aafbSBarry Smith Level: beginner 2790d382aafbSBarry Smith 2791d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2792eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2793eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2794d382aafbSBarry Smith 2795d382aafbSBarry Smith M*/ 2796d382aafbSBarry Smith 2797d382aafbSBarry Smith /*MC 2798d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2799d382aafbSBarry Smith value into that location 2800d382aafbSBarry Smith 2801d382aafbSBarry Smith Level: beginner 2802d382aafbSBarry Smith 2803d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2804eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2805eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2806d382aafbSBarry Smith 2807d382aafbSBarry Smith M*/ 2808d382aafbSBarry Smith 2809d382aafbSBarry Smith /*MC 2810d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2811d382aafbSBarry Smith 2812d382aafbSBarry Smith Level: beginner 2813d382aafbSBarry Smith 2814d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2815d382aafbSBarry Smith 2816d382aafbSBarry Smith M*/ 2817d382aafbSBarry Smith 2818ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2819ce94432eSBarry Smith 282045487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 282145487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 282245487dadSJed Brown 2823d382aafbSBarry Smith /*S 2824306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2825306c2d5bSBarry Smith 2826e28ce29aSPatrick Sanan Notes: 2827e28ce29aSPatrick Sanan After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2828306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 28293bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2830306c2d5bSBarry Smith 2831306c2d5bSBarry Smith Sample Usage: 2832306c2d5bSBarry Smith PetscSubcommCreate() 2833306c2d5bSBarry Smith PetscSubcommSetNumber() 2834306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2835306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2836306c2d5bSBarry Smith PetscSubcommDestroy() 2837d382aafbSBarry Smith 2838d382aafbSBarry Smith Level: advanced 2839d382aafbSBarry Smith 2840d382aafbSBarry Smith Concepts: communicator, create 2841306c2d5bSBarry Smith 2842306c2d5bSBarry Smith Notes: 2843306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 28443bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2845306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2846306c2d5bSBarry Smith 2847e28ce29aSPatrick Sanan Example: Consider a communicator with six processes split into 3 subcommunicators. 2848306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2849306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2850306c2d5bSBarry Smith 2851e28ce29aSPatrick Sanan Developer Notes: 2852e28ce29aSPatrick Sanan This is used in objects such as PCREDUNDANT to manage the subcommunicators on which the redundant computations 2853306c2d5bSBarry Smith are performed. 2854306c2d5bSBarry Smith 2855306c2d5bSBarry Smith 2856306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2857306c2d5bSBarry Smith 2858d382aafbSBarry Smith S*/ 2859d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2860d382aafbSBarry Smith 2861d382aafbSBarry Smith struct _n_PetscSubcomm { 2862d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2863d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2864306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 286545487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 286645487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2867708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 286845487dadSJed Brown PetscSubcommType type; 2869e5acf8a4SHong Zhang char *subcommprefix; 2870d382aafbSBarry Smith }; 2871d382aafbSBarry Smith 2872c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2873306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 287436be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2875014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2876014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2877014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 287965d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2880053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2881f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2882e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2883d382aafbSBarry Smith 28840f453b92SJed Brown /*S 28859962606eSBarry Smith PetscHeap - A simple class for managing heaps 28869962606eSBarry Smith 28879962606eSBarry Smith Level: intermediate 28889962606eSBarry Smith 28899962606eSBarry Smith Concepts: random numbers 28909962606eSBarry Smith 28919962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 28929962606eSBarry Smith S*/ 28939962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 28949962606eSBarry Smith 28959962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 28969962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 28979962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 28989962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 28999962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 29009962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 29019962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 29029962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 29039962606eSBarry Smith 29045e71baefSBarry Smith PETSC_EXTERN PetscErrorCode PetscProcessPlacementView(PetscViewer); 290542218b76SBarry Smith typedef struct _n_PetscCommShared* PetscCommShared; 290642218b76SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGet(MPI_Comm,PetscCommShared*); 29074e73f77fSBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGlobalToLocal(PetscCommShared,PetscMPIInt,PetscMPIInt*); 2908ee655a11SBarry Smith PETSC_EXTERN PetscErrorCode PetscCommSharedGetComm(PetscCommShared,MPI_Comm*); 29095e71baefSBarry Smith 29109962606eSBarry Smith /*S 29110f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 29120f453b92SJed Brown 29130f453b92SJed Brown Level: developer 29140f453b92SJed Brown 29150f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 29160f453b92SJed Brown S*/ 29170f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 291813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 29190f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 292013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2921137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2922137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2923137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 292413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 292513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 29260f453b92SJed Brown 29275e71baefSBarry Smith 2928471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2929471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2930471ecdacSJed Brown * possible. */ 293135005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2932d382aafbSBarry Smith 29339de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 29349de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 29359de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 29369de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 29379de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 29389de0f6ecSBarry Smith 2939ace2fbaeSBarry Smith #include <stdarg.h> 2940ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 2941ace2fbaeSBarry Smith PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 2942ace2fbaeSBarry Smith 2943268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2944fbfcfee5SBarry Smith 29451f817a21SBarry Smith /*@C 29461f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 29471f817a21SBarry Smith 29481f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 29491f817a21SBarry Smith 29501f817a21SBarry Smith Input Parameters: 29511f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 29521f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 29531f817a21SBarry Smith 2954850545d0SSatish Balay Level: intermediate 2955850545d0SSatish Balay 2956f5f57ec0SBarry Smith Not available from Fortran 2957f5f57ec0SBarry Smith 29581f817a21SBarry Smith Options Database: 2959063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 29601f817a21SBarry Smith @*/ 2961dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2962dff31646SBarry Smith { 2963dff31646SBarry Smith size_t len; 2964dff31646SBarry Smith char *vstring; 2965dff31646SBarry Smith PetscErrorCode ierr; 2966dff31646SBarry Smith 29671f817a21SBarry Smith PetscFunctionBegin; 29688d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2969dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 297035005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2971dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2972dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29731f817a21SBarry Smith PetscFunctionReturn(0); 2974dff31646SBarry Smith } 2975dff31646SBarry Smith 2976b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2977fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2978fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2979f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2980fe278a28SBarry Smith 2981f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2982f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2983b967cddfSBarry Smith 29849f4d3c52SBarry Smith PETSC_EXTERN PetscErrorCode PetscGlobusGetTransfers(MPI_Comm,const char[],char[],size_t); 29859f4d3c52SBarry Smith 298604102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2987763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2988dff31646SBarry Smith 298968e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29905dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2991d382aafbSBarry Smith 2992b2566f29SBarry Smith 2993b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2994b2566f29SBarry Smith /* 2995b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2996b2566f29SBarry Smith */ 29978f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 299877a5e07dSBarry Smith 299977a5e07dSBarry Smith /*MC 300077a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 300177a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 300277a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 300377a5e07dSBarry Smith 300477a5e07dSBarry Smith Collective on MPI_Comm 300577a5e07dSBarry Smith 300677a5e07dSBarry Smith Synopsis: 300777a5e07dSBarry Smith #include <petscsys.h> 300877a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 300977a5e07dSBarry Smith 301077a5e07dSBarry Smith Input Parameters: 301177a5e07dSBarry Smith + indata - pointer to the input data to be reduced 301277a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 301377a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 301477a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 301577a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 301677a5e07dSBarry Smith 301777a5e07dSBarry Smith Output Parameter: 301877a5e07dSBarry Smith . outdata - the reduced values 301977a5e07dSBarry Smith 3020e28ce29aSPatrick Sanan Notes: 3021e28ce29aSPatrick Sanan In optimized mode this directly calls MPI_Allreduce() 302277a5e07dSBarry Smith 302377a5e07dSBarry Smith Level: developer 302477a5e07dSBarry Smith 302577a5e07dSBarry Smith .seealso: MPI_Allreduce() 302677a5e07dSBarry Smith M*/ 3027fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 3028b2566f29SBarry Smith #else 3029b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 3030b2566f29SBarry Smith #endif 3031b2566f29SBarry Smith 30326f7079ddSSatish Balay #if defined(PETSC_HAVE_MPI_WIN_CREATE_FEATURE) 30338198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_allocate_shared(MPI_Aint,PetscMPIInt,MPI_Info,MPI_Comm,void*,MPI_Win*); 30348198064fSBarry Smith PETSC_EXTERN PetscErrorCode MPIU_Win_shared_query(MPI_Win,PetscMPIInt,MPI_Aint*,PetscMPIInt*,void*); 30352f065d89SBarry Smith #endif 30368198064fSBarry Smith 303712801b39SBarry Smith /* 303812801b39SBarry Smith Returned from PETSc functions that are called from MPI, such as related to attributes 303912801b39SBarry Smith */ 304012801b39SBarry Smith PETSC_EXTERN PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 304112801b39SBarry Smith 3042d382aafbSBarry Smith #endif 3043