1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 14d382aafbSBarry Smith #include "petscconf.h" 15d382aafbSBarry Smith #include "petscfix.h" 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28*ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29*ea0fecefSShri Abhyankar #define _GNU_SOURCE 30*ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352981ebdbSBarry Smith This facilitates using the C version of PETSc from C++ and the 36e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 37d382aafbSBarry Smith */ 38d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 39d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 40d382aafbSBarry Smith #endif 411ec50b02SJed Brown 421ec50b02SJed Brown #if defined(__cplusplus) 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 441ec50b02SJed Brown #else 451ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 461ec50b02SJed Brown #endif 47d382aafbSBarry Smith 48d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 49da861ed6SJed Brown #define PETSC_EXTERN extern "C" 50d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 51d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 52d382aafbSBarry Smith #else 53da861ed6SJed Brown #define PETSC_EXTERN extern 54d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 55d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 56d382aafbSBarry Smith #endif 57d382aafbSBarry Smith /* ========================================================================== */ 58d382aafbSBarry Smith /* 59d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 60d382aafbSBarry Smith Web page 61d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 62d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 63d382aafbSBarry Smith src/docs/website/index.html. 64d382aafbSBarry Smith */ 65d382aafbSBarry Smith #include "petscversion.h" 66301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 67d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 68301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 69d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 70301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 71d382aafbSBarry Smith #else 72301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 73301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 74d382aafbSBarry Smith #endif 75d382aafbSBarry Smith 76d382aafbSBarry Smith /*MC 77d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 78d382aafbSBarry Smith 79d382aafbSBarry Smith Input Parameter: 80d382aafbSBarry Smith . len - length of the string 81d382aafbSBarry Smith 82d382aafbSBarry Smith Output Parameter: 83d382aafbSBarry Smith . version - version string 84d382aafbSBarry Smith 85d382aafbSBarry Smith Level: developer 86d382aafbSBarry Smith 87d382aafbSBarry Smith Usage: 88d382aafbSBarry Smith char version[256]; 89d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 90d382aafbSBarry Smith 91d382aafbSBarry Smith Fortran Note: 92d382aafbSBarry Smith This routine is not supported in Fortran. 93d382aafbSBarry Smith 94d382aafbSBarry Smith .seealso: PetscGetProgramName() 95d382aafbSBarry Smith 96d382aafbSBarry Smith M*/ 97d382aafbSBarry Smith 98d382aafbSBarry Smith /* ========================================================================== */ 99d382aafbSBarry Smith 100d382aafbSBarry Smith /* 101d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 102d382aafbSBarry Smith 103d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 104d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 105d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 106d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 107d382aafbSBarry Smith mpicxx.h directly in their code 108d382aafbSBarry Smith */ 109d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 110d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 111d382aafbSBarry Smith #include "mpi.h" 11265013866SBarry Smith 113d382aafbSBarry Smith /* 1142981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 115d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 116d382aafbSBarry Smith */ 117d382aafbSBarry Smith #include <stdio.h> 118d382aafbSBarry Smith 119d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 120d382aafbSBarry Smith #if !defined(MPIAPI) 121d382aafbSBarry Smith #define MPIAPI 122d382aafbSBarry Smith #endif 123d382aafbSBarry Smith 124b3506946SBarry Smith 125d382aafbSBarry Smith /*MC 126d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 127d382aafbSBarry Smith 128d382aafbSBarry Smith Level: beginner 129d382aafbSBarry Smith 130d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 131d382aafbSBarry Smith M*/ 132d382aafbSBarry Smith typedef int PetscErrorCode; 133d382aafbSBarry Smith 134d382aafbSBarry Smith /*MC 135d382aafbSBarry Smith 136503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 137d382aafbSBarry Smith (internal integer in the data structure used for error 1382981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1390700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 140d382aafbSBarry Smith 141d382aafbSBarry Smith Level: advanced 142d382aafbSBarry Smith 1430700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 144d382aafbSBarry Smith M*/ 1450700a824SBarry Smith typedef int PetscClassId; 146d382aafbSBarry Smith 147d382aafbSBarry Smith 148d382aafbSBarry Smith /*MC 149d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 150d382aafbSBarry Smith 151d382aafbSBarry Smith Level: intermediate 152d382aafbSBarry Smith 153d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1543b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 155d382aafbSBarry Smith 1563b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 1572981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 158d382aafbSBarry Smith 1593b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1602981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 161d382aafbSBarry Smith 162d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 163d382aafbSBarry Smith 164d382aafbSBarry Smith M*/ 165d382aafbSBarry Smith typedef int PetscMPIInt; 166d382aafbSBarry Smith 167d382aafbSBarry Smith /*MC 168d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 169d382aafbSBarry Smith 170d382aafbSBarry Smith Level: intermediate 171d382aafbSBarry Smith 172d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 173d382aafbSBarry Smith M*/ 174d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 175d382aafbSBarry Smith 176d382aafbSBarry Smith /*MC 177d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1783b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 179d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 180d382aafbSBarry Smith 181d382aafbSBarry Smith Level: intermediate 182d382aafbSBarry Smith 183d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 184d382aafbSBarry Smith M*/ 185f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 186f505b413SSatish Balay typedef long long Petsc64bitInt; 187f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 188236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 189236ed0a3SSatish Balay #else 190f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 191236ed0a3SSatish Balay #endif 192d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 193236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 194d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 195d382aafbSBarry Smith #else 196d382aafbSBarry Smith typedef int PetscInt; 197d382aafbSBarry Smith #define MPIU_INT MPI_INT 198d382aafbSBarry Smith #endif 199236ed0a3SSatish Balay 200d382aafbSBarry Smith 201702bc34aSSatish Balay /*MC 202702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 203702bc34aSSatish Balay 204702bc34aSSatish Balay Level: intermediate 205702bc34aSSatish Balay 206702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 207702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 208702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 209702bc34aSSatish Balay 210702bc34aSSatish Balay PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 2112981ebdbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE error. 212702bc34aSSatish Balay 213702bc34aSSatish Balay PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2142981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 215702bc34aSSatish Balay 2162981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 217702bc34aSSatish Balay if you run ./configure with the option 218702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2192981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2202981ebdbSBarry Smith 2212981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2222981ebdbSBarry Smith 2232981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 224702bc34aSSatish Balay 225702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 226702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 227702bc34aSSatish Balay 228702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 229702bc34aSSatish Balay 230702bc34aSSatish Balay M*/ 231702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 232702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 233702bc34aSSatish Balay #else 234702bc34aSSatish Balay typedef int PetscBLASInt; 235702bc34aSSatish Balay #endif 236702bc34aSSatish Balay 23758b60935SBarry Smith /*EC 23858b60935SBarry Smith 2392981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 24058b60935SBarry Smith 24158b60935SBarry Smith Level: advanced 24258b60935SBarry Smith 24358b60935SBarry Smith .seealso: PetscObjectSetPrecision() 24458b60935SBarry Smith E*/ 24558b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 24658b60935SBarry Smith extern const char *PetscPrecisions[]; 24758b60935SBarry Smith 248503cfb0cSBarry Smith /* 249503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 250503cfb0cSBarry Smith */ 251d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 252d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 253d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 254d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 255d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 256d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 257d382aafbSBarry Smith #else 258d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 259d382aafbSBarry Smith #endif 260d382aafbSBarry Smith 261d382aafbSBarry Smith 262d382aafbSBarry Smith /* 263d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 264d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 265d382aafbSBarry Smith */ 266d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 267d382aafbSBarry Smith 268d382aafbSBarry Smith /* 269d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 270d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 271d382aafbSBarry Smith */ 272d382aafbSBarry Smith extern FILE* PETSC_STDERR; 273d382aafbSBarry Smith 274d382aafbSBarry Smith /*MC 275d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 276d382aafbSBarry Smith 277d382aafbSBarry Smith Synopsis: 278ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 279d382aafbSBarry Smith 280eca87e8dSBarry Smith Not Collective 281eca87e8dSBarry Smith 282d382aafbSBarry Smith Input Parameters: 283d382aafbSBarry Smith . cond - condition or expression 284d382aafbSBarry Smith 285d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 286d382aafbSBarry Smith branch is unlikely. 287d382aafbSBarry Smith 288d382aafbSBarry Smith Level: advanced 289d382aafbSBarry Smith 290d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 291d382aafbSBarry Smith M*/ 292d382aafbSBarry Smith 293d382aafbSBarry Smith /*MC 294d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 295d382aafbSBarry Smith 296d382aafbSBarry Smith Synopsis: 297ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 298d382aafbSBarry Smith 299eca87e8dSBarry Smith Not Collective 300eca87e8dSBarry Smith 301d382aafbSBarry Smith Input Parameters: 302d382aafbSBarry Smith . cond - condition or expression 303d382aafbSBarry Smith 304d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 305d382aafbSBarry Smith branch is likely. 306d382aafbSBarry Smith 307d382aafbSBarry Smith Level: advanced 308d382aafbSBarry Smith 309d382aafbSBarry Smith .seealso: PetscUnlikely() 310d382aafbSBarry Smith M*/ 311d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 312d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 313d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 314d382aafbSBarry Smith #else 315cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 316cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 317d382aafbSBarry Smith #endif 318d382aafbSBarry Smith 319d382aafbSBarry Smith /* 320d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 321d382aafbSBarry Smith */ 322d382aafbSBarry Smith #include "petscmath.h" 323d382aafbSBarry Smith 324d382aafbSBarry Smith /* 325d382aafbSBarry Smith Declare extern C stuff after including external header files 326d382aafbSBarry Smith */ 327d382aafbSBarry Smith 328d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 329d382aafbSBarry Smith 330d382aafbSBarry Smith /* 331d382aafbSBarry Smith Basic PETSc constants 332d382aafbSBarry Smith */ 333d382aafbSBarry Smith 334d382aafbSBarry Smith /*E 335ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 336d382aafbSBarry Smith 337d382aafbSBarry Smith Level: beginner 338d382aafbSBarry Smith 339ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 34034e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 34134e82e7dSBarry Smith 342d382aafbSBarry Smith E*/ 343ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 344ace3abfcSBarry Smith extern const char *PetscBools[]; 34570b3c8c7SBarry Smith 34670b3c8c7SBarry Smith /*E 34770b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 34870b3c8c7SBarry Smith 34970b3c8c7SBarry Smith Level: beginner 35070b3c8c7SBarry Smith 35170b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 35270b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 35370b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 35470b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 35570b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 35670b3c8c7SBarry Smith 35770b3c8c7SBarry Smith E*/ 35870b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 35970b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 360d382aafbSBarry Smith 361d382aafbSBarry Smith /*MC 362ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 363d382aafbSBarry Smith 364d382aafbSBarry Smith Level: beginner 365d382aafbSBarry Smith 366d382aafbSBarry Smith Note: Zero integer 367d382aafbSBarry Smith 368ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 369d382aafbSBarry Smith M*/ 370d382aafbSBarry Smith 371d382aafbSBarry Smith /*MC 372ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 373d382aafbSBarry Smith 374d382aafbSBarry Smith Level: beginner 375d382aafbSBarry Smith 376d382aafbSBarry Smith Note: Nonzero integer 377d382aafbSBarry Smith 378ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 379d382aafbSBarry Smith M*/ 380d382aafbSBarry Smith 381d382aafbSBarry Smith /*MC 382d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 383d382aafbSBarry Smith 384d382aafbSBarry Smith Level: beginner 385d382aafbSBarry Smith 386d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 387d382aafbSBarry Smith some default 388d382aafbSBarry Smith 389d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 390503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 391d382aafbSBarry Smith 39234e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 39334e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 39434e82e7dSBarry Smith 395d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 396d382aafbSBarry Smith 397d382aafbSBarry Smith M*/ 398d382aafbSBarry Smith #define PETSC_NULL 0 399d382aafbSBarry Smith 400d382aafbSBarry Smith /*MC 401d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 402d382aafbSBarry Smith 403d382aafbSBarry Smith Level: beginner 404d382aafbSBarry Smith 405d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 406d382aafbSBarry Smith some default 407d382aafbSBarry Smith 408d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 409d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 410d382aafbSBarry Smith 411d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 412d382aafbSBarry Smith 413d382aafbSBarry Smith M*/ 414d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 415d382aafbSBarry Smith 416d382aafbSBarry Smith /*MC 417557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 418557d4da8SBarry Smith where you wish PETSc to use the default. 419557d4da8SBarry Smith 420557d4da8SBarry Smith Level: beginner 421557d4da8SBarry Smith 422557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 423557d4da8SBarry Smith 424557d4da8SBarry Smith M*/ 425557d4da8SBarry Smith #define PETSC_DECIDE -1 426557d4da8SBarry Smith 427557d4da8SBarry Smith /*MC 428d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 429d382aafbSBarry Smith where you wish PETSc to compute the required value. 430d382aafbSBarry Smith 431d382aafbSBarry Smith Level: beginner 432d382aafbSBarry Smith 433557d4da8SBarry Smith 434557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 435557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 436557d4da8SBarry Smith 437d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 438d382aafbSBarry Smith 439d382aafbSBarry Smith M*/ 440d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 441d382aafbSBarry Smith 442d382aafbSBarry Smith /*MC 443557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 444557d4da8SBarry Smith where you wish PETSc to use the default. 445557d4da8SBarry Smith 446557d4da8SBarry Smith Level: beginner 447557d4da8SBarry Smith 448557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 449557d4da8SBarry Smith 450557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 451557d4da8SBarry Smith 452557d4da8SBarry Smith M*/ 453557d4da8SBarry Smith #define PETSC_DEFAULT -2 454557d4da8SBarry Smith 455557d4da8SBarry Smith /*MC 456d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 457d382aafbSBarry Smith all the processs that PETSc knows about. 458d382aafbSBarry Smith 459d382aafbSBarry Smith Level: beginner 460d382aafbSBarry Smith 461d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 462d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 463d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 464d382aafbSBarry Smith PetscInitialize() 465d382aafbSBarry Smith 466d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 467d382aafbSBarry Smith 468d382aafbSBarry Smith M*/ 469d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 470d382aafbSBarry Smith 471d382aafbSBarry Smith /*MC 472503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 473d382aafbSBarry Smith 474d382aafbSBarry Smith Level: beginner 475d382aafbSBarry Smith 476d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 477d382aafbSBarry Smith 478d382aafbSBarry Smith M*/ 479d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 480d382aafbSBarry Smith 4817087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 4827087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 4838b5db460SBarry Smith extern PetscBool PetscCUSPSynchronize; 484d382aafbSBarry Smith 4857087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 4867087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 4877087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 488d382aafbSBarry Smith 489d382aafbSBarry Smith /*MC 490d382aafbSBarry Smith PetscMalloc - Allocates memory 491d382aafbSBarry Smith 492eca87e8dSBarry Smith Synopsis: 493eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 494eca87e8dSBarry Smith 495eca87e8dSBarry Smith Not Collective 496eca87e8dSBarry Smith 497d382aafbSBarry Smith Input Parameter: 498d382aafbSBarry Smith . m - number of bytes to allocate 499d382aafbSBarry Smith 500d382aafbSBarry Smith Output Parameter: 501d382aafbSBarry Smith . result - memory allocated 502d382aafbSBarry Smith 503d382aafbSBarry Smith Level: beginner 504d382aafbSBarry Smith 505d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 506d382aafbSBarry Smith 507d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 508d382aafbSBarry Smith properly handle not freeing the null pointer. 509d382aafbSBarry Smith 510d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 511d382aafbSBarry Smith 512d382aafbSBarry Smith Concepts: memory allocation 513d382aafbSBarry Smith 514d382aafbSBarry Smith M*/ 5152714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 516d382aafbSBarry Smith 517d382aafbSBarry Smith /*MC 518503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 519d382aafbSBarry Smith 520d382aafbSBarry Smith Synopsis: 521d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 522d382aafbSBarry Smith 523eca87e8dSBarry Smith Not Collective 524eca87e8dSBarry Smith 525eca87e8dSBarry Smith Input Parameters: 526eca87e8dSBarry Smith . addr - address to align (any pointer type) 527eca87e8dSBarry Smith 528d382aafbSBarry Smith Level: developer 529d382aafbSBarry Smith 530d382aafbSBarry Smith .seealso: PetscMallocAlign() 531d382aafbSBarry Smith 532d382aafbSBarry Smith Concepts: memory allocation 533d382aafbSBarry Smith M*/ 534d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 535d382aafbSBarry Smith 536d382aafbSBarry Smith /*MC 537503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 538d382aafbSBarry Smith 539eca87e8dSBarry Smith Synopsis: 540eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 541eca87e8dSBarry Smith 542eca87e8dSBarry Smith Not Collective 543eca87e8dSBarry Smith 544d382aafbSBarry Smith Input Parameter: 545d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 546d382aafbSBarry Smith . t1 - type of first memory elements 547d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 548d382aafbSBarry Smith - t2 - type of second memory elements 549d382aafbSBarry Smith 550d382aafbSBarry Smith Output Parameter: 551d382aafbSBarry Smith + r1 - memory allocated in first chunk 552d382aafbSBarry Smith - r2 - memory allocated in second chunk 553d382aafbSBarry Smith 554d382aafbSBarry Smith Level: developer 555d382aafbSBarry Smith 556d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 557d382aafbSBarry Smith 558d382aafbSBarry Smith Concepts: memory allocation 559d382aafbSBarry Smith 560d382aafbSBarry Smith M*/ 561d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 562d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 563d382aafbSBarry Smith #else 5642981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 565d382aafbSBarry Smith #endif 566d382aafbSBarry Smith 567d382aafbSBarry Smith /*MC 568503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 569d382aafbSBarry Smith 570eca87e8dSBarry Smith Synopsis: 571eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 572eca87e8dSBarry Smith 573eca87e8dSBarry Smith Not Collective 574eca87e8dSBarry Smith 575d382aafbSBarry Smith Input Parameter: 576d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 577d382aafbSBarry Smith . t1 - type of first memory elements 578d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 579d382aafbSBarry Smith . t2 - type of second memory elements 580d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 581d382aafbSBarry Smith - t3 - type of third memory elements 582d382aafbSBarry Smith 583d382aafbSBarry Smith Output Parameter: 584d382aafbSBarry Smith + r1 - memory allocated in first chunk 585d382aafbSBarry Smith . r2 - memory allocated in second chunk 586d382aafbSBarry Smith - r3 - memory allocated in third chunk 587d382aafbSBarry Smith 588d382aafbSBarry Smith Level: developer 589d382aafbSBarry Smith 590d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 591d382aafbSBarry Smith 592d382aafbSBarry Smith Concepts: memory allocation 593d382aafbSBarry Smith 594d382aafbSBarry Smith M*/ 595d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 596d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 597d382aafbSBarry Smith #else 5983b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 599d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 600d382aafbSBarry Smith #endif 601d382aafbSBarry Smith 602d382aafbSBarry Smith /*MC 603503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 604d382aafbSBarry Smith 605eca87e8dSBarry Smith Synopsis: 606eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 607eca87e8dSBarry Smith 608eca87e8dSBarry Smith Not Collective 609eca87e8dSBarry Smith 610d382aafbSBarry Smith Input Parameter: 611d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 612d382aafbSBarry Smith . t1 - type of first memory elements 613d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 614d382aafbSBarry Smith . t2 - type of second memory elements 615d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 616d382aafbSBarry Smith . t3 - type of third memory elements 617d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 618d382aafbSBarry Smith - t4 - type of fourth memory elements 619d382aafbSBarry Smith 620d382aafbSBarry Smith Output Parameter: 621d382aafbSBarry Smith + r1 - memory allocated in first chunk 622d382aafbSBarry Smith . r2 - memory allocated in second chunk 623d382aafbSBarry Smith . r3 - memory allocated in third chunk 624d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 625d382aafbSBarry Smith 626d382aafbSBarry Smith Level: developer 627d382aafbSBarry Smith 628d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 629d382aafbSBarry Smith 630d382aafbSBarry Smith Concepts: memory allocation 631d382aafbSBarry Smith 632d382aafbSBarry Smith M*/ 633d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 634d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 635d382aafbSBarry Smith #else 636d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6373b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 638d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 639d382aafbSBarry Smith #endif 640d382aafbSBarry Smith 641d382aafbSBarry Smith /*MC 642503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 643d382aafbSBarry Smith 644eca87e8dSBarry Smith Synopsis: 645eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 646eca87e8dSBarry Smith 647eca87e8dSBarry Smith Not Collective 648eca87e8dSBarry Smith 649d382aafbSBarry Smith Input Parameter: 650d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 651d382aafbSBarry Smith . t1 - type of first memory elements 652d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 653d382aafbSBarry Smith . t2 - type of second memory elements 654d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 655d382aafbSBarry Smith . t3 - type of third memory elements 656d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 657d382aafbSBarry Smith . t4 - type of fourth memory elements 658d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 659d382aafbSBarry Smith - t5 - type of fifth memory elements 660d382aafbSBarry Smith 661d382aafbSBarry Smith Output Parameter: 662d382aafbSBarry Smith + r1 - memory allocated in first chunk 663d382aafbSBarry Smith . r2 - memory allocated in second chunk 664d382aafbSBarry Smith . r3 - memory allocated in third chunk 665d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 666d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 667d382aafbSBarry Smith 668d382aafbSBarry Smith Level: developer 669d382aafbSBarry Smith 670d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 671d382aafbSBarry Smith 672d382aafbSBarry Smith Concepts: memory allocation 673d382aafbSBarry Smith 674d382aafbSBarry Smith M*/ 675d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 676d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 677d382aafbSBarry Smith #else 678d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 6793b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 680d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 681d382aafbSBarry Smith #endif 682d382aafbSBarry Smith 683d382aafbSBarry Smith 684d382aafbSBarry Smith /*MC 685503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 686d382aafbSBarry Smith 687eca87e8dSBarry Smith Synopsis: 688eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 689eca87e8dSBarry Smith 690eca87e8dSBarry Smith Not Collective 691eca87e8dSBarry Smith 692d382aafbSBarry Smith Input Parameter: 693d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 694d382aafbSBarry Smith . t1 - type of first memory elements 695d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 696d382aafbSBarry Smith . t2 - type of second memory elements 697d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 698d382aafbSBarry Smith . t3 - type of third memory elements 699d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 700d382aafbSBarry Smith . t4 - type of fourth memory elements 701d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 702d382aafbSBarry Smith . t5 - type of fifth memory elements 703d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 704d382aafbSBarry Smith - t6 - type of sixth memory elements 705d382aafbSBarry Smith 706d382aafbSBarry Smith Output Parameter: 707d382aafbSBarry Smith + r1 - memory allocated in first chunk 708d382aafbSBarry Smith . r2 - memory allocated in second chunk 709d382aafbSBarry Smith . r3 - memory allocated in third chunk 710d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 711d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 712d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 713d382aafbSBarry Smith 714d382aafbSBarry Smith Level: developer 715d382aafbSBarry Smith 716d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 717d382aafbSBarry Smith 718d382aafbSBarry Smith Concepts: memory allocation 719d382aafbSBarry Smith 720d382aafbSBarry Smith M*/ 721d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 722d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 723d382aafbSBarry Smith #else 724d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7253b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 726d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 727d382aafbSBarry Smith #endif 728d382aafbSBarry Smith 729d382aafbSBarry Smith /*MC 730503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 731d382aafbSBarry Smith 732eca87e8dSBarry Smith Synopsis: 733eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 734eca87e8dSBarry Smith 735eca87e8dSBarry Smith Not Collective 736eca87e8dSBarry Smith 737d382aafbSBarry Smith Input Parameter: 738d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 739d382aafbSBarry Smith . t1 - type of first memory elements 740d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 741d382aafbSBarry Smith . t2 - type of second memory elements 742d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 743d382aafbSBarry Smith . t3 - type of third memory elements 744d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 745d382aafbSBarry Smith . t4 - type of fourth memory elements 746d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 747d382aafbSBarry Smith . t5 - type of fifth memory elements 748d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 749d382aafbSBarry Smith . t6 - type of sixth memory elements 750d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 751d382aafbSBarry Smith - t7 - type of sixth memory elements 752d382aafbSBarry Smith 753d382aafbSBarry Smith Output Parameter: 754d382aafbSBarry Smith + r1 - memory allocated in first chunk 755d382aafbSBarry Smith . r2 - memory allocated in second chunk 756d382aafbSBarry Smith . r3 - memory allocated in third chunk 757d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 758d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 759d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 760eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 761d382aafbSBarry Smith 762d382aafbSBarry Smith Level: developer 763d382aafbSBarry Smith 764d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 765d382aafbSBarry Smith 766d382aafbSBarry Smith Concepts: memory allocation 767d382aafbSBarry Smith 768d382aafbSBarry Smith M*/ 769d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 770d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 771d382aafbSBarry Smith #else 772d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 7733b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 774d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 775d382aafbSBarry Smith #endif 776d382aafbSBarry Smith 777d382aafbSBarry Smith /*MC 778503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 779d382aafbSBarry Smith 780eca87e8dSBarry Smith Synopsis: 781eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 782eca87e8dSBarry Smith 783eca87e8dSBarry Smith Not Collective 784eca87e8dSBarry Smith 785d382aafbSBarry Smith Input Parameter: 786d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 787d382aafbSBarry Smith 788d382aafbSBarry Smith Output Parameter: 789d382aafbSBarry Smith . result - memory allocated 790d382aafbSBarry Smith 791d382aafbSBarry Smith Level: beginner 792d382aafbSBarry Smith 793ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 794d382aafbSBarry Smith 795d382aafbSBarry Smith Concepts: memory allocation 796d382aafbSBarry Smith 797d382aafbSBarry Smith M*/ 798d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 799ad0619ddSBarry Smith 800ad0619ddSBarry Smith /*MC 801ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 802ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 803ad0619ddSBarry Smith 804ad0619ddSBarry Smith Synopsis: 805ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 806ad0619ddSBarry Smith 807ad0619ddSBarry Smith Not Collective 808ad0619ddSBarry Smith 809ad0619ddSBarry Smith Input Parameter: 810ad0619ddSBarry Smith + obj - object memory is logged to 811ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 812ad0619ddSBarry Smith 813ad0619ddSBarry Smith Output Parameter: 814ad0619ddSBarry Smith . result - memory allocated 815ad0619ddSBarry Smith 816ad0619ddSBarry Smith Level: developer 817ad0619ddSBarry Smith 818ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 819ad0619ddSBarry Smith 820ad0619ddSBarry Smith Concepts: memory allocation 821ad0619ddSBarry Smith 822ad0619ddSBarry Smith M*/ 823d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 824d382aafbSBarry Smith 825d382aafbSBarry Smith /*MC 826d382aafbSBarry Smith PetscFree - Frees memory 827d382aafbSBarry Smith 828eca87e8dSBarry Smith Synopsis: 829eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 830eca87e8dSBarry Smith 831eca87e8dSBarry Smith Not Collective 832eca87e8dSBarry Smith 833d382aafbSBarry Smith Input Parameter: 834d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 835d382aafbSBarry Smith 836d382aafbSBarry Smith Level: beginner 837d382aafbSBarry Smith 838d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 839d382aafbSBarry Smith 840d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 841d382aafbSBarry Smith 842d382aafbSBarry Smith Concepts: memory allocation 843d382aafbSBarry Smith 844d382aafbSBarry Smith M*/ 84512537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 846d382aafbSBarry Smith 847d382aafbSBarry Smith /*MC 848d382aafbSBarry Smith PetscFreeVoid - Frees memory 849d382aafbSBarry Smith 850d382aafbSBarry Smith Synopsis: 851d382aafbSBarry Smith void PetscFreeVoid(void *memory) 852d382aafbSBarry Smith 853eca87e8dSBarry Smith Not Collective 854eca87e8dSBarry Smith 855eca87e8dSBarry Smith Input Parameter: 856eca87e8dSBarry Smith . memory - memory to free 857eca87e8dSBarry Smith 858d382aafbSBarry Smith Level: beginner 859d382aafbSBarry Smith 860d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 861d382aafbSBarry Smith 862d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 863d382aafbSBarry Smith 864d382aafbSBarry Smith Concepts: memory allocation 865d382aafbSBarry Smith 866d382aafbSBarry Smith M*/ 8672714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 868d382aafbSBarry Smith 869d382aafbSBarry Smith 870d382aafbSBarry Smith /*MC 871d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 872d382aafbSBarry Smith 873eca87e8dSBarry Smith Synopsis: 874eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 875eca87e8dSBarry Smith 876eca87e8dSBarry Smith Not Collective 877eca87e8dSBarry Smith 878d382aafbSBarry Smith Input Parameter: 879d382aafbSBarry Smith + memory1 - memory to free 880d382aafbSBarry Smith - memory2 - 2nd memory to free 881d382aafbSBarry Smith 882d382aafbSBarry Smith Level: developer 883d382aafbSBarry Smith 884d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 885d382aafbSBarry Smith 886d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 887d382aafbSBarry Smith 888d382aafbSBarry Smith Concepts: memory allocation 889d382aafbSBarry Smith 890d382aafbSBarry Smith M*/ 891d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 892d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 893d382aafbSBarry Smith #else 89481dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 895d382aafbSBarry Smith #endif 896d382aafbSBarry Smith 897d382aafbSBarry Smith /*MC 898d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 899d382aafbSBarry Smith 900eca87e8dSBarry Smith Synopsis: 901eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 902eca87e8dSBarry Smith 903eca87e8dSBarry Smith Not Collective 904eca87e8dSBarry Smith 905d382aafbSBarry Smith Input Parameter: 906d382aafbSBarry Smith + memory1 - memory to free 907d382aafbSBarry Smith . memory2 - 2nd memory to free 908d382aafbSBarry Smith - memory3 - 3rd memory to free 909d382aafbSBarry Smith 910d382aafbSBarry Smith Level: developer 911d382aafbSBarry Smith 912d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 913d382aafbSBarry Smith 914d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 915d382aafbSBarry Smith 916d382aafbSBarry Smith Concepts: memory allocation 917d382aafbSBarry Smith 918d382aafbSBarry Smith M*/ 919d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 920d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 921d382aafbSBarry Smith #else 92281dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 923d382aafbSBarry Smith #endif 924d382aafbSBarry Smith 925d382aafbSBarry Smith /*MC 926d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 927d382aafbSBarry Smith 928eca87e8dSBarry Smith Synopsis: 929eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 930eca87e8dSBarry Smith 931eca87e8dSBarry Smith Not Collective 932eca87e8dSBarry Smith 933d382aafbSBarry Smith Input Parameter: 934d382aafbSBarry Smith + m1 - memory to free 935d382aafbSBarry Smith . m2 - 2nd memory to free 936d382aafbSBarry Smith . m3 - 3rd memory to free 937d382aafbSBarry Smith - m4 - 4th memory to free 938d382aafbSBarry Smith 939d382aafbSBarry Smith Level: developer 940d382aafbSBarry Smith 941d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 942d382aafbSBarry Smith 943d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 944d382aafbSBarry Smith 945d382aafbSBarry Smith Concepts: memory allocation 946d382aafbSBarry Smith 947d382aafbSBarry Smith M*/ 948d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 949d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 950d382aafbSBarry Smith #else 95181dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 952d382aafbSBarry Smith #endif 953d382aafbSBarry Smith 954d382aafbSBarry Smith /*MC 955d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 956d382aafbSBarry Smith 957eca87e8dSBarry Smith Synopsis: 958eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 959eca87e8dSBarry Smith 960eca87e8dSBarry Smith Not Collective 961eca87e8dSBarry Smith 962d382aafbSBarry Smith Input Parameter: 963d382aafbSBarry Smith + m1 - memory to free 964d382aafbSBarry Smith . m2 - 2nd memory to free 965d382aafbSBarry Smith . m3 - 3rd memory to free 966d382aafbSBarry Smith . m4 - 4th memory to free 967d382aafbSBarry Smith - m5 - 5th memory to free 968d382aafbSBarry Smith 969d382aafbSBarry Smith Level: developer 970d382aafbSBarry Smith 971d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 972d382aafbSBarry Smith 973d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 974d382aafbSBarry Smith 975d382aafbSBarry Smith Concepts: memory allocation 976d382aafbSBarry Smith 977d382aafbSBarry Smith M*/ 978d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 979d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 980d382aafbSBarry Smith #else 98181dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 982d382aafbSBarry Smith #endif 983d382aafbSBarry Smith 984d382aafbSBarry Smith 985d382aafbSBarry Smith /*MC 986d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 987d382aafbSBarry Smith 988eca87e8dSBarry Smith Synopsis: 989eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 990eca87e8dSBarry Smith 991eca87e8dSBarry Smith Not Collective 992eca87e8dSBarry Smith 993d382aafbSBarry Smith Input Parameter: 994d382aafbSBarry Smith + m1 - memory to free 995d382aafbSBarry Smith . m2 - 2nd memory to free 996d382aafbSBarry Smith . m3 - 3rd memory to free 997d382aafbSBarry Smith . m4 - 4th memory to free 998d382aafbSBarry Smith . m5 - 5th memory to free 999d382aafbSBarry Smith - m6 - 6th memory to free 1000d382aafbSBarry Smith 1001d382aafbSBarry Smith 1002d382aafbSBarry Smith Level: developer 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1005d382aafbSBarry Smith 1006d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith Concepts: memory allocation 1009d382aafbSBarry Smith 1010d382aafbSBarry Smith M*/ 1011d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1012d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1013d382aafbSBarry Smith #else 101481dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1015d382aafbSBarry Smith #endif 1016d382aafbSBarry Smith 1017d382aafbSBarry Smith /*MC 1018d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1019d382aafbSBarry Smith 1020eca87e8dSBarry Smith Synopsis: 1021eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1022eca87e8dSBarry Smith 1023eca87e8dSBarry Smith Not Collective 1024eca87e8dSBarry Smith 1025d382aafbSBarry Smith Input Parameter: 1026d382aafbSBarry Smith + m1 - memory to free 1027d382aafbSBarry Smith . m2 - 2nd memory to free 1028d382aafbSBarry Smith . m3 - 3rd memory to free 1029d382aafbSBarry Smith . m4 - 4th memory to free 1030d382aafbSBarry Smith . m5 - 5th memory to free 1031d382aafbSBarry Smith . m6 - 6th memory to free 1032d382aafbSBarry Smith - m7 - 7th memory to free 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith 1035d382aafbSBarry Smith Level: developer 1036d382aafbSBarry Smith 1037d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1038d382aafbSBarry Smith 1039d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1040d382aafbSBarry Smith PetscMalloc7() 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith Concepts: memory allocation 1043d382aafbSBarry Smith 1044d382aafbSBarry Smith M*/ 1045d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1046d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1047d382aafbSBarry Smith #else 104881dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1049d382aafbSBarry Smith #endif 1050d382aafbSBarry Smith 10517087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 10527087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 10537087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 10547087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1055d382aafbSBarry Smith 1056d382aafbSBarry Smith /* 1057a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1058a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1059a5057860SBarry Smith timing etc. 1060a5057860SBarry Smith */ 1061a5057860SBarry Smith typedef double PetscLogDouble; 1062a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1063a5057860SBarry Smith 1064a5057860SBarry Smith /* 106566d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1066d382aafbSBarry Smith */ 10677087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 10687087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 10697087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 10707087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 10717087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 10727087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 10737087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 107418a2528dSJed Brown extern PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1075d382aafbSBarry Smith 1076d382aafbSBarry Smith /*E 1077d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1078d382aafbSBarry Smith 1079d382aafbSBarry Smith Level: beginner 1080d382aafbSBarry Smith 1081d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1084d382aafbSBarry Smith PetscDataTypeGetSize() 1085d382aafbSBarry Smith 1086d382aafbSBarry Smith E*/ 1087d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 108859a34000SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType; 1089d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1090d382aafbSBarry Smith 1091d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1092d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1093d382aafbSBarry Smith #else 1094ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1095d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 109659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 109759a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1098d382aafbSBarry Smith #else 1099d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1100d382aafbSBarry Smith #endif 1101d382aafbSBarry Smith #endif 1102ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1103d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 110459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 110559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1106d382aafbSBarry Smith #else 1107d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1108d382aafbSBarry Smith #endif 1109d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1110d382aafbSBarry Smith 11117087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11127087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11137087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1114d382aafbSBarry Smith 1115d382aafbSBarry Smith /* 1116d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1117d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1118d382aafbSBarry Smith functionality and/or error checking. 1119d382aafbSBarry Smith */ 11207087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11217087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11227087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11237087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11247087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11257087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11267087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11277087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11287087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 11297087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 11307087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 11317087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 11327087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 11337087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 11347087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 11357087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 11367087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 11377087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 11387087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 113974722a09SBarry Smith extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11407ba3a57cSBarry Smith extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 11417087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 11427087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1143d382aafbSBarry Smith 1144d382aafbSBarry Smith /*S 1145d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1146d382aafbSBarry Smith 1147d382aafbSBarry Smith Level: intermediate 1148d382aafbSBarry Smith 1149d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1150d382aafbSBarry Smith S*/ 1151d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1152d382aafbSBarry Smith 11537087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 11547087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 11558c74ee41SBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken*); 1156d382aafbSBarry Smith 1157d382aafbSBarry Smith /* 1158d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1159d382aafbSBarry Smith */ 11607087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 11612414b3c7SJed Brown #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1162b0c94c62SJed Brown extern MPI_Op MPIU_SUM; 11632414b3c7SJed Brown #else 11642414b3c7SJed Brown #define MPIU_SUM MPI_SUM 11652414b3c7SJed Brown #endif 11662414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1167d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1168d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1169d9822059SBarry Smith #else 1170d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1171d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1172d9822059SBarry Smith #endif 11737087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1174d382aafbSBarry Smith 1175a25532f0SBarry Smith extern PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1176a25532f0SBarry Smith extern PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1177eb3f98d2SBarry Smith 1178d382aafbSBarry Smith /*S 1179d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1180d382aafbSBarry Smith 1181d382aafbSBarry Smith Level: beginner 1182d382aafbSBarry Smith 11832981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1184d382aafbSBarry Smith 11851890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1186d382aafbSBarry Smith S*/ 1187d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1188d382aafbSBarry Smith 1189d382aafbSBarry Smith /*S 1190d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1191d382aafbSBarry Smith by string name 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith Level: advanced 1194d382aafbSBarry Smith 11952981ebdbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy(), PetscOpFlist 1196d382aafbSBarry Smith S*/ 1197d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1198d382aafbSBarry Smith 1199e4d1774bSDmitry Karpeev /*S 1200e4d1774bSDmitry Karpeev PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries, 1201e4d1774bSDmitry Karpeev accessed by string op name together with string argument types. 1202e4d1774bSDmitry Karpeev 1203e4d1774bSDmitry Karpeev Level: advanced 1204e4d1774bSDmitry Karpeev 12052981ebdbSBarry Smith .seealso: PetscFList, PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy() 1206e4d1774bSDmitry Karpeev S*/ 1207e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList; 1208e4d1774bSDmitry Karpeev 1209d382aafbSBarry Smith /*E 1210d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith Level: beginner 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1217d382aafbSBarry Smith 1218d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1225d382aafbSBarry Smith E*/ 1226d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith #include "petscviewer.h" 1229d382aafbSBarry Smith #include "petscoptions.h" 1230d382aafbSBarry Smith 12310700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 12327087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 12337087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 12347087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1235d382aafbSBarry Smith 1236d382aafbSBarry Smith /* 1237d382aafbSBarry Smith Routines that get memory usage information from the OS 1238d382aafbSBarry Smith */ 12397087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 12407087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 12417087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 12427087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1243d382aafbSBarry Smith 12447087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 12457087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 12467087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 12477087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith /* 1250d382aafbSBarry Smith Initialization of PETSc 1251d382aafbSBarry Smith */ 12527087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 12532981ebdbSBarry Smith extern PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 12547087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 12557087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 12567087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 12577087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 125809573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 12597087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 12607087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 12617087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1262d382aafbSBarry Smith 12637087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 12647087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 126785afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 126885afcc9aSBarry Smith extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 126985afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFinalize(void); 127085afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 127185afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 127285afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 127385afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1274d382aafbSBarry Smith 12757087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 12767087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 12777087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 12785180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith /* 1281d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 12822981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1283d382aafbSBarry Smith */ 1284d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1285d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1286d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1287d382aafbSBarry Smith 1288d382aafbSBarry Smith /* 1289d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1290d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1291503cfb0cSBarry Smith 1292503cfb0cSBarry Smith Level: developer 1293503cfb0cSBarry Smith 1294503cfb0cSBarry Smith .seealso: PetscUseMethod() 1295d382aafbSBarry Smith */ 1296d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1297d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1298d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1299d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1300d382aafbSBarry Smith } 1301503cfb0cSBarry Smith 1302503cfb0cSBarry Smith /* 1303503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1304503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1305503cfb0cSBarry Smith 1306503cfb0cSBarry Smith Level: developer 1307503cfb0cSBarry Smith 1308503cfb0cSBarry Smith .seealso: PetscTryMethod() 1309503cfb0cSBarry Smith */ 1310d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1311d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1312d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1313d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1314703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1315d382aafbSBarry Smith } 1316503cfb0cSBarry Smith 1317d382aafbSBarry Smith /* 1318d382aafbSBarry Smith Functions that can act on any PETSc object. 1319d382aafbSBarry Smith */ 1320fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13217087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13227087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1323609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13247087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13257087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13267087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13277087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 13287087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 13297087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 13307087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 13317087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 13327087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 13337087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 13347087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 13357087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 13367087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 13377087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 13387087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 13396ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 13407087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 13417087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 13427087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 13437087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 13447087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 13457087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 13467087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 13477087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 134876270f95SDmitry Karpeev extern PetscErrorCode PetscObjectListGetGlobalNumbering(MPI_Comm, PetscInt,PetscObject*, PetscInt*,PetscInt*); 1349d382aafbSBarry Smith 1350d382aafbSBarry Smith /*MC 1351d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1352d382aafbSBarry Smith 1353eca87e8dSBarry Smith Synopsis: 1354eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1355eca87e8dSBarry Smith 1356ad4df100SBarry Smith Logically Collective on PetscObject 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith Input Parameters: 1359d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1360d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1361d382aafbSBarry Smith . name - name associated with the child function 1362d382aafbSBarry Smith . fname - name of the function 1363d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1364d382aafbSBarry Smith 1365d382aafbSBarry Smith Level: advanced 1366d382aafbSBarry Smith 1367d382aafbSBarry Smith 1368d382aafbSBarry Smith Notes: 1369d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1370d382aafbSBarry Smith 1371d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1372d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1373d382aafbSBarry Smith 1374d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 137520de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1376d382aafbSBarry Smith enabled. 1377d382aafbSBarry Smith 1378d382aafbSBarry Smith Concepts: objects^composing functions 1379d382aafbSBarry Smith Concepts: composing functions 1380d382aafbSBarry Smith Concepts: functions^querying 1381d382aafbSBarry Smith Concepts: objects^querying 1382d382aafbSBarry Smith Concepts: querying objects 1383d382aafbSBarry Smith 1384d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1385d382aafbSBarry Smith M*/ 1386d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1387d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1388d382aafbSBarry Smith #else 1389d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1390d382aafbSBarry Smith #endif 1391d382aafbSBarry Smith 13927087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 13937087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 13947087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 13957087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 13967087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 13977087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 13987087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 13997087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 14007087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 14017087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 14027087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 1403251f4c67SDmitry Karpeev extern PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1404251f4c67SDmitry Karpeev extern PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14057087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14067087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1407d382aafbSBarry Smith 1408d382aafbSBarry Smith /* 1409d382aafbSBarry Smith Defines PETSc error handling. 1410d382aafbSBarry Smith */ 1411d382aafbSBarry Smith #include "petscerror.h" 1412d382aafbSBarry Smith 1413d382aafbSBarry Smith /*S 1414503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1415d382aafbSBarry Smith 14161d0fab5eSBarry Smith Level: developer 1417d382aafbSBarry Smith 14181d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14191d0fab5eSBarry Smith 14202981ebdbSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFList 1421d382aafbSBarry Smith S*/ 1422d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1423d382aafbSBarry Smith 1424fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14257087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1426bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14277087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14286ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 14297087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1430d382aafbSBarry Smith 1431d382aafbSBarry Smith /* 1432503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1433d382aafbSBarry Smith link libraries that will be loaded as needed. 1434d382aafbSBarry Smith */ 14357087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 14367087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 14374b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 14387087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1439d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1440d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1441d382aafbSBarry Smith #else 1442d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1443d382aafbSBarry Smith #endif 14447087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 14457087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 14467087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 14477087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1448d382aafbSBarry Smith 144948703020SDmitry Karpeev /* 145048703020SDmitry Karpeev Multiple dispatch operation function lists. Lists of names of routines with corresponding 145148703020SDmitry Karpeev argument type names with function pointers or in dynamic link libraries that will be loaded 145248703020SDmitry Karpeev as needed. Search on the op name and argument type names. 145348703020SDmitry Karpeev */ 14542356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]); 145548703020SDmitry Karpeev extern PetscErrorCode PetscOpFListDestroy(PetscOpFList*); 14562356f84bSDmitry Karpeev extern PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]); 145748703020SDmitry Karpeev extern PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer); 14582981ebdbSBarry Smith 1459d382aafbSBarry Smith /*S 1460d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1461d382aafbSBarry Smith 1462d382aafbSBarry Smith Level: advanced 1463d382aafbSBarry Smith 146420de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1465d382aafbSBarry Smith 1466d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1467d382aafbSBarry Smith S*/ 1468d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1469d44a1e48SBarry Smith extern PetscDLLibrary PetscDLLibrariesLoaded; 14707087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 14717087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 14727087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 14737087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 14747087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 14757087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 14767087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1477d382aafbSBarry Smith 1478d382aafbSBarry Smith /* 1479a5a3d712SDmitry Karpeev PetscShell support. Needs to be better documented. 148005846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 148105846914SDmitry Karpeev */ 1482a5a3d712SDmitry Karpeev #include "petscshell.h" 148305846914SDmitry Karpeev 148405846914SDmitry Karpeev /* 1485d382aafbSBarry Smith Useful utility routines 1486d382aafbSBarry Smith */ 14877087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 14887087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 14897087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 14907087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 14917087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 14927087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1493d382aafbSBarry Smith 1494503cfb0cSBarry Smith /* 1495ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1496503cfb0cSBarry Smith 1497503cfb0cSBarry Smith Notes: This is useful in cases like 1498503cfb0cSBarry Smith $ int *a; 1499ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1500ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1501503cfb0cSBarry Smith */ 1502d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1503503cfb0cSBarry Smith 1504d382aafbSBarry Smith /* 1505d382aafbSBarry Smith Defines basic graphics available from PETSc. 1506d382aafbSBarry Smith */ 1507d382aafbSBarry Smith #include "petscdraw.h" 1508d382aafbSBarry Smith 1509d382aafbSBarry Smith /* 1510d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1511d382aafbSBarry Smith */ 1512b45d2f2cSJed Brown #include "petsc-private/petscimpl.h" 1513503cfb0cSBarry Smith 1514238ccf28SShri Abhyankar 1515d382aafbSBarry Smith /*MC 1516d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1517d382aafbSBarry Smith 1518d382aafbSBarry Smith Synopsis: 1519d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1520d382aafbSBarry Smith 1521eca87e8dSBarry Smith Not Collective 1522eca87e8dSBarry Smith 1523d382aafbSBarry Smith Input Parameters: 1524d382aafbSBarry Smith . format - the usual printf() format string 1525d382aafbSBarry Smith 1526d382aafbSBarry Smith Options Database Keys: 1527d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1528d382aafbSBarry Smith (default) stderr 1529d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1530d382aafbSBarry Smith error is handled.) 1531d382aafbSBarry Smith 1532d382aafbSBarry Smith Notes: Use 1533d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1534d382aafbSBarry Smith $ error is handled.) and 1535d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1536c9a19010SBarry Smith $ of you can use your own function 1537d382aafbSBarry Smith 1538d382aafbSBarry Smith Use 1539d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1540d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1541d382aafbSBarry Smith 1542d382aafbSBarry Smith Use 1543d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1544d382aafbSBarry Smith 1545d382aafbSBarry Smith Level: developer 1546d382aafbSBarry Smith 1547d382aafbSBarry Smith Fortran Note: 1548d382aafbSBarry Smith This routine is not supported in Fortran. 1549d382aafbSBarry Smith 1550d382aafbSBarry Smith Concepts: error messages^printing 1551d382aafbSBarry Smith Concepts: printing^error messages 1552d382aafbSBarry Smith 1553c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1554d382aafbSBarry Smith M*/ 15557087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1556d382aafbSBarry Smith 1557d382aafbSBarry Smith /*MC 1558d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1559d382aafbSBarry Smith 1560d382aafbSBarry Smith Synopsis: 1561d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1562d382aafbSBarry Smith 1563eca87e8dSBarry Smith Not Collective 1564eca87e8dSBarry Smith 1565d382aafbSBarry Smith Input Parameters: 1566d382aafbSBarry Smith . format - the usual printf() format string 1567d382aafbSBarry Smith 1568d382aafbSBarry Smith Level: developer 1569d382aafbSBarry Smith 1570d382aafbSBarry Smith Fortran Note: 1571d382aafbSBarry Smith This routine is not supported in Fortran. 1572d382aafbSBarry Smith 1573d382aafbSBarry Smith Concepts: help messages^printing 1574d382aafbSBarry Smith Concepts: printing^help messages 1575d382aafbSBarry Smith 1576d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1577d382aafbSBarry Smith M*/ 15787087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1579d382aafbSBarry Smith 1580fcfd50ebSBarry Smith /* 1581fcfd50ebSBarry Smith Defines PETSc profiling. 1582fcfd50ebSBarry Smith */ 1583fcfd50ebSBarry Smith #include "petsclog.h" 1584fcfd50ebSBarry Smith 1585fcfd50ebSBarry Smith /* 1586fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1587fcfd50ebSBarry Smith */ 1588fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1589fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1590fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1591fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1592fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1593fcfd50ebSBarry Smith #else 1594fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1595fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1596fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1597fcfd50ebSBarry Smith #endif 1598fcfd50ebSBarry Smith 1599fcfd50ebSBarry Smith /* 1600fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1601fcfd50ebSBarry Smith */ 1602fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1603fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1604fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1605fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1606fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1607fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1608257d2499SJed Brown extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1609fcfd50ebSBarry Smith 1610fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1611fcfd50ebSBarry Smith #include <stdarg.h> 1612fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1613fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1614fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1615fcfd50ebSBarry Smith 1616fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1617fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1618fcfd50ebSBarry Smith #endif 1619fcfd50ebSBarry Smith 162009573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 162109573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 162209573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1623d382aafbSBarry Smith 1624d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16257087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16267087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1627d382aafbSBarry Smith #endif 1628d382aafbSBarry Smith 16297087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 16307087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 16317087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 16327087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 16337087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 16347087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 16357087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1636d382aafbSBarry Smith 16377087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1638d382aafbSBarry Smith 1639d382aafbSBarry Smith /*S 1640d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1641d382aafbSBarry Smith 1642d382aafbSBarry Smith Level: advanced 1643d382aafbSBarry Smith 1644d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1645d382aafbSBarry Smith S*/ 16467087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1647d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 16487087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 16497087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1650fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 16517087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 16527087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1653d382aafbSBarry Smith 1654d382aafbSBarry Smith /* 1655d382aafbSBarry Smith For use in debuggers 1656d382aafbSBarry Smith */ 16577087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 16587087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 16597087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 16607087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 16617087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1662d382aafbSBarry Smith 1663d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1664d382aafbSBarry Smith #include <memory.h> 1665d382aafbSBarry Smith #endif 1666d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1667d382aafbSBarry Smith #include <stdlib.h> 1668d382aafbSBarry Smith #endif 1669d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1670d382aafbSBarry Smith #include <strings.h> 1671d382aafbSBarry Smith #endif 1672d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1673d382aafbSBarry Smith #include <string.h> 1674d382aafbSBarry Smith #endif 16756c7e564aSBarry Smith 16764a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1677d382aafbSBarry Smith #include <xmmintrin.h> 1678d382aafbSBarry Smith #endif 1679d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1680d382aafbSBarry Smith #include <stdint.h> 1681d382aafbSBarry Smith #endif 1682d382aafbSBarry Smith 1683fcfd50ebSBarry Smith #undef __FUNCT__ 1684fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1685d382aafbSBarry Smith /*@C 1686d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1687d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1688d382aafbSBarry Smith PetscMemmove() in that case. 1689d382aafbSBarry Smith 1690d382aafbSBarry Smith Not Collective 1691d382aafbSBarry Smith 1692d382aafbSBarry Smith Input Parameters: 1693d382aafbSBarry Smith + b - pointer to initial memory space 1694d382aafbSBarry Smith - n - length (in bytes) of space to copy 1695d382aafbSBarry Smith 1696d382aafbSBarry Smith Output Parameter: 1697d382aafbSBarry Smith . a - pointer to copy space 1698d382aafbSBarry Smith 1699d382aafbSBarry Smith Level: intermediate 1700d382aafbSBarry Smith 1701d382aafbSBarry Smith Compile Option: 1702d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1703d382aafbSBarry Smith for memory copies on double precision values. 1704d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1705d382aafbSBarry Smith for memory copies on double precision values. 1706d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1707d382aafbSBarry Smith for memory copies on double precision values. 1708d382aafbSBarry Smith 1709d382aafbSBarry Smith Note: 1710d382aafbSBarry Smith This routine is analogous to memcpy(). 1711d382aafbSBarry Smith 1712503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1713503cfb0cSBarry Smith 1714d382aafbSBarry Smith Concepts: memory^copying 1715d382aafbSBarry Smith Concepts: copying^memory 1716d382aafbSBarry Smith 1717d382aafbSBarry Smith .seealso: PetscMemmove() 1718d382aafbSBarry Smith 1719d382aafbSBarry Smith @*/ 17207087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1721d382aafbSBarry Smith { 1722d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1723d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1724d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1725a7e36092SMatthew G Knepley PetscFunctionBegin; 1726e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1727e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1728a7e36092SMatthew G Knepley #else 1729d382aafbSBarry Smith PetscFunctionBegin; 1730a7e36092SMatthew G Knepley #endif 1731d382aafbSBarry Smith if (a != b) { 1732d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1733e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1734d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1735d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1736d382aafbSBarry Smith #endif 1737d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1738d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1739d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1740d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1741d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1742d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1743d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1744d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1745d382aafbSBarry Smith #else 1746d382aafbSBarry Smith size_t i; 1747d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1748d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1749d382aafbSBarry Smith #endif 1750d382aafbSBarry Smith } else { 1751d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1752d382aafbSBarry Smith } 1753d382aafbSBarry Smith #else 1754d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1755d382aafbSBarry Smith #endif 1756d382aafbSBarry Smith } 1757d382aafbSBarry Smith PetscFunctionReturn(0); 1758d382aafbSBarry Smith } 1759d382aafbSBarry Smith 1760d382aafbSBarry Smith /*@C 1761d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1762d382aafbSBarry Smith 1763d382aafbSBarry Smith Not Collective 1764d382aafbSBarry Smith 1765d382aafbSBarry Smith Input Parameters: 1766d382aafbSBarry Smith + a - pointer to beginning memory location 1767d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1768d382aafbSBarry Smith 1769d382aafbSBarry Smith Level: intermediate 1770d382aafbSBarry Smith 1771d382aafbSBarry Smith Compile Option: 1772d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1773d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1774d382aafbSBarry Smith 1775503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1776503cfb0cSBarry Smith 1777d382aafbSBarry Smith Concepts: memory^zeroing 1778d382aafbSBarry Smith Concepts: zeroing^memory 1779d382aafbSBarry Smith 1780d382aafbSBarry Smith .seealso: PetscMemcpy() 1781d382aafbSBarry Smith @*/ 17827087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1783d382aafbSBarry Smith { 1784d382aafbSBarry Smith if (n > 0) { 1785d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1786e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1787d382aafbSBarry Smith #endif 1788d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1789d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1790d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1791d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1792d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1793d382aafbSBarry Smith } else { 1794d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1795d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1796d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1797d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1798d382aafbSBarry Smith } else { 1799d382aafbSBarry Smith #endif 1800d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1801d382aafbSBarry Smith bzero((char *)a,n); 1802d382aafbSBarry Smith #else 1803d382aafbSBarry Smith memset((char*)a,0,n); 1804d382aafbSBarry Smith #endif 1805d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1806d382aafbSBarry Smith } 1807d382aafbSBarry Smith #endif 1808d382aafbSBarry Smith } 1809d382aafbSBarry Smith return 0; 1810d382aafbSBarry Smith } 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith /*MC 1813d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1814d382aafbSBarry Smith 1815eca87e8dSBarry Smith Synopsis: 1816eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1817eca87e8dSBarry Smith 1818d382aafbSBarry Smith Not Collective 1819d382aafbSBarry Smith 1820d382aafbSBarry Smith Input Parameters: 1821d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1822d382aafbSBarry Smith . n - number of elements to fetch 1823d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 182450d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1825d382aafbSBarry Smith 1826d382aafbSBarry Smith Level: developer 1827d382aafbSBarry Smith 1828d382aafbSBarry Smith Notes: 1829d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1830d382aafbSBarry Smith 183150d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 183250d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 183350d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 183463cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 183563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 183663cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1839d382aafbSBarry Smith address). 1840d382aafbSBarry Smith 1841d382aafbSBarry Smith Concepts: memory 1842d382aafbSBarry Smith M*/ 1843d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1844d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1845d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1846d382aafbSBarry Smith } while (0) 1847d382aafbSBarry Smith 1848d382aafbSBarry Smith /* 1849e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1850d382aafbSBarry Smith */ 1851d382aafbSBarry Smith #include "petscmatlab.h" 1852d382aafbSBarry Smith 1853d382aafbSBarry Smith /* 1854d382aafbSBarry Smith Determine if some of the kernel computation routines use 1855d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1856d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1857d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1858e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1859d382aafbSBarry Smith */ 1860d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1861d382aafbSBarry Smith 1862d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1863d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1864d382aafbSBarry Smith #endif 1865d382aafbSBarry Smith 18665a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 18675a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1868d382aafbSBarry Smith #endif 1869d382aafbSBarry Smith 1870d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1871d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1872d382aafbSBarry Smith #endif 1873d382aafbSBarry Smith 1874d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1875d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1876d382aafbSBarry Smith #endif 1877d382aafbSBarry Smith 1878d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1879d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1880d382aafbSBarry Smith #endif 1881d382aafbSBarry Smith 1882d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1883d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1884d382aafbSBarry Smith #endif 1885d382aafbSBarry Smith 1886d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1887d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1888d382aafbSBarry Smith #endif 1889d382aafbSBarry Smith 1890d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1891d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1892d382aafbSBarry Smith #endif 1893d382aafbSBarry Smith 1894d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1895d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1896d382aafbSBarry Smith #endif 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1899d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1900d382aafbSBarry Smith #endif 1901d382aafbSBarry Smith 1902d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1903d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1904d382aafbSBarry Smith #endif 1905d382aafbSBarry Smith 1906d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1907d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1908d382aafbSBarry Smith #endif 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1911d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1912d382aafbSBarry Smith #endif 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1915d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1916d382aafbSBarry Smith #endif 1917d382aafbSBarry Smith 1918d382aafbSBarry Smith #endif 1919d382aafbSBarry Smith 1920d382aafbSBarry Smith /* 1921d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1922d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1923d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1924d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1925d382aafbSBarry Smith ugly extern "C" {} wrappers. 1926d382aafbSBarry Smith */ 1927d382aafbSBarry Smith #if defined(__cplusplus) 1928da861ed6SJed Brown #define PETSC_EXTERN_C extern "C" 1929d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1930d382aafbSBarry Smith #define EXTERN_C_END } 1931d382aafbSBarry Smith #else 1932da861ed6SJed Brown #define PETSC_EXTERN_C 1933d382aafbSBarry Smith #define EXTERN_C_BEGIN 1934d382aafbSBarry Smith #define EXTERN_C_END 1935d382aafbSBarry Smith #endif 1936d382aafbSBarry Smith 1937d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith /*MC 1940d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1941d382aafbSBarry Smith communication 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith Level: beginner 1944d382aafbSBarry Smith 1945d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1948d382aafbSBarry Smith M*/ 1949d382aafbSBarry Smith 1950d382aafbSBarry Smith /*MC 1951d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1952d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1953d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith 1956d382aafbSBarry Smith Level: beginner 1957d382aafbSBarry Smith 1958d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1959d382aafbSBarry Smith M*/ 1960d382aafbSBarry Smith 1961d382aafbSBarry Smith /*MC 1962d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1963d382aafbSBarry Smith 1964d382aafbSBarry Smith Level: beginner 1965d382aafbSBarry Smith 1966d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1967d382aafbSBarry Smith M*/ 1968d382aafbSBarry Smith 1969d382aafbSBarry Smith /*MC 1970d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1971d382aafbSBarry Smith Level: beginner 1972d382aafbSBarry Smith 1973d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 1974d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1975d382aafbSBarry Smith 1976d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 1977d382aafbSBarry Smith M*/ 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith /*MC 1980d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 1981d382aafbSBarry Smith 1982d382aafbSBarry Smith Level: beginner 1983d382aafbSBarry Smith 1984d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 1985d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 1988d382aafbSBarry Smith M*/ 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith /*MC 1991d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 1992d382aafbSBarry Smith 1993d382aafbSBarry Smith Level: beginner 1994d382aafbSBarry Smith 1995d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 1996d382aafbSBarry Smith pass this value 1997d382aafbSBarry Smith 1998d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 1999d382aafbSBarry Smith M*/ 2000d382aafbSBarry Smith 2001d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2002d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2003d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2004d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2005d382aafbSBarry Smith #else 2006d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2007d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2008d382aafbSBarry Smith #endif 2009d382aafbSBarry Smith #endif 2010d382aafbSBarry Smith 2011d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2014d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2015d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2016d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2017d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2018d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2019d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2020d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2021d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2022d382aafbSBarry Smith 2023d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2024e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2025e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2026eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2027eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2028d382aafbSBarry Smith 2029d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2030e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2031eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2032d382aafbSBarry Smith #else 2033d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2034d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2035d382aafbSBarry Smith #endif 2036d382aafbSBarry Smith 2037d382aafbSBarry Smith #else 2038d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2039d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2040d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2041d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2042d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2043d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2044d382aafbSBarry Smith #endif 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith /* 20472981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2048d382aafbSBarry Smith */ 2049d382aafbSBarry Smith #if defined(hz) 2050d382aafbSBarry Smith #undef hz 2051d382aafbSBarry Smith #endif 2052d382aafbSBarry Smith 2053d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2054d382aafbSBarry Smith 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2057d382aafbSBarry Smith #include <limits.h> 2058d382aafbSBarry Smith #endif 2059d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2060d382aafbSBarry Smith #include <sys/param.h> 2061d382aafbSBarry Smith #endif 2062d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2063d382aafbSBarry Smith #include <sys/types.h> 2064d382aafbSBarry Smith #endif 2065d382aafbSBarry Smith #if defined(MAXPATHLEN) 2066d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2067d382aafbSBarry Smith #elif defined(MAX_PATH) 2068d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2069d382aafbSBarry Smith #elif defined(_MAX_PATH) 2070d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2071d382aafbSBarry Smith #else 2072d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2073d382aafbSBarry Smith #endif 2074d382aafbSBarry Smith 2075d382aafbSBarry Smith /* Special support for C++ */ 2076d382aafbSBarry Smith #include "petscsys.hh" 20776c7e564aSBarry Smith 2078d382aafbSBarry Smith /*MC 2079d382aafbSBarry Smith 2080d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith $ 1) classic Fortran 77 style 2083d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2084d382aafbSBarry Smith $ XXX variablename 2085d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2086d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2087d382aafbSBarry Smith $ 2088d382aafbSBarry Smith $ 2) classic Fortran 90 style 2089d1716517SSatish Balay $#include "finclude/petscXXX.h" 2090d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2091d382aafbSBarry Smith $ XXX variablename 2092d382aafbSBarry Smith $ 2093d382aafbSBarry Smith $ 3) Using Fortran modules 2094d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2095d382aafbSBarry Smith $ use petscXXXX 2096d382aafbSBarry Smith $ XXX variablename 2097d382aafbSBarry Smith $ 2098d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2099d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2100d382aafbSBarry Smith $ use petscXXXX 2101d382aafbSBarry Smith $ type(XXX) variablename 2102e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2103d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2106d382aafbSBarry Smith 2107d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2108d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2109d382aafbSBarry Smith $ integer variablename 2110d382aafbSBarry Smith $ 2111d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2112d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2115d382aafbSBarry Smith for only a few PETSc functions. 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2118d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2119d382aafbSBarry Smith you cannot have something like 2120d382aafbSBarry Smith $ PetscInt row,col 2121d382aafbSBarry Smith $ PetscScalar val 2122d382aafbSBarry Smith $ ... 2123d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2124d382aafbSBarry Smith You must instead have 2125d382aafbSBarry Smith $ PetscInt row(1),col(1) 2126d382aafbSBarry Smith $ PetscScalar val(1) 2127d382aafbSBarry Smith $ ... 2128d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2129d382aafbSBarry Smith 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2132d382aafbSBarry Smith 2133d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2134d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2135d382aafbSBarry Smith 2136d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2137d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2138d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2141e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2142d382aafbSBarry Smith 2143d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2144d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2147d382aafbSBarry Smith automatically by "make allfortranstubs". 2148d382aafbSBarry Smith 2149e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2150d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2151d382aafbSBarry Smith include their predecessors 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith Level: beginner 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith M*/ 2156d382aafbSBarry Smith 21577087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 21587087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 21597087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 21607087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 21617087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 21627087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2163d382aafbSBarry Smith 21647087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 21657087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 21667087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 21677087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 21687087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2169d7aa01a8SHong Zhang extern PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 21707087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 21717087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 21727087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 21737087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 21747087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 21757087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 21767087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 21779b67c4b3SDmitry Karpeev extern PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2178d382aafbSBarry Smith 21797087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 21807087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2181d382aafbSBarry Smith 218276bdecfbSBarry Smith /*J 2183d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2184d382aafbSBarry Smith with an optional dynamic library name, for example 2185d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2186d382aafbSBarry Smith 2187d382aafbSBarry Smith Level: beginner 2188d382aafbSBarry Smith 2189e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2190d382aafbSBarry Smith with the option --download-sprng 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 219376bdecfbSBarry Smith J*/ 2194d382aafbSBarry Smith #define PetscRandomType char* 2195d382aafbSBarry Smith #define PETSCRAND "rand" 2196d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2197d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith /* Logging support */ 22007087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2201d382aafbSBarry Smith 22027087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2203d382aafbSBarry Smith 2204d382aafbSBarry Smith /*S 2205d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith Level: intermediate 2208d382aafbSBarry Smith 2209d382aafbSBarry Smith Concepts: random numbers 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2212d382aafbSBarry Smith S*/ 2213d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2214d382aafbSBarry Smith 2215d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2216d382aafbSBarry Smith extern PetscFList PetscRandomList; 2217ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2218d382aafbSBarry Smith 22197087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 22207087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22217087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 22227087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 22237087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 22247087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 22257087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 22267087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2227d382aafbSBarry Smith 2228d382aafbSBarry Smith /*MC 2229d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2230d382aafbSBarry Smith 2231d382aafbSBarry Smith Synopsis: 22321890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2233d382aafbSBarry Smith 2234d382aafbSBarry Smith Not Collective 2235d382aafbSBarry Smith 2236d382aafbSBarry Smith Input Parameters: 2237d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2238d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2239d382aafbSBarry Smith . func_name - The name of routine to create method context 2240d382aafbSBarry Smith - create_func - The creation routine itself 2241d382aafbSBarry Smith 2242d382aafbSBarry Smith Notes: 2243d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2244d382aafbSBarry Smith 2245d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2246d382aafbSBarry Smith 2247d382aafbSBarry Smith Sample usage: 2248d382aafbSBarry Smith .vb 2249d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2250d382aafbSBarry Smith .ve 2251d382aafbSBarry Smith 2252d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2253d382aafbSBarry Smith .vb 2254d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2255d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2256d382aafbSBarry Smith .ve 2257d382aafbSBarry Smith or at runtime via the option 2258d382aafbSBarry Smith .vb 2259d382aafbSBarry Smith -random_type my_random_name 2260d382aafbSBarry Smith .ve 2261d382aafbSBarry Smith 2262d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2263d382aafbSBarry Smith 2264d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2265d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2266d382aafbSBarry Smith 2267d382aafbSBarry Smith Level: advanced 2268d382aafbSBarry Smith 2269d382aafbSBarry Smith .keywords: PetscRandom, register 2270d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2271d382aafbSBarry Smith M*/ 2272d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2273d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2274d382aafbSBarry Smith #else 2275d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2276d382aafbSBarry Smith #endif 2277d382aafbSBarry Smith 22787087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 22797087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 22807087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 22817087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 22827087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 22837087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 22847087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 22857087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2286fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2287d382aafbSBarry Smith 22887087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 22897087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 22907087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 22917087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 22927087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 22937087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 22947087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2295d382aafbSBarry Smith 22967087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 22977087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 22987087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 22997087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 23007087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 23017087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 23027087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 23037087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23047087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23057087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23067087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23077087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23087087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2309d382aafbSBarry Smith 2310d382aafbSBarry Smith /* 2311d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2312d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2313d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2314d382aafbSBarry Smith PetscBinarySeek(). 2315d382aafbSBarry Smith */ 2316d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2317d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2318d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2319d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2320d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2321d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2322d382aafbSBarry Smith 2323d382aafbSBarry Smith /*E 2324d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2325d382aafbSBarry Smith 2326d382aafbSBarry Smith Level: advanced 2327d382aafbSBarry Smith 2328d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2329d382aafbSBarry Smith E*/ 2330d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 23317087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 23327087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 233346090da6SBarry Smith extern PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2334d382aafbSBarry Smith 23357087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 23367087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 23377087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 23387c764164SBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(const char*); 23397087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 23407087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2341d382aafbSBarry Smith 23427087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 23437087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 23447087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 23457087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 23467087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2347d382aafbSBarry Smith 23487087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2349d382aafbSBarry Smith 2350d382aafbSBarry Smith /*E 2351d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2352d382aafbSBarry Smith 2353d382aafbSBarry Smith Level: beginner 2354d382aafbSBarry Smith 2355d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2356d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2357d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2358d382aafbSBarry Smith E*/ 235911f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2360d382aafbSBarry Smith 2361d382aafbSBarry Smith /*MC 2362d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2363d382aafbSBarry Smith 2364d382aafbSBarry Smith Level: beginner 2365d382aafbSBarry Smith 2366d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2367eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2368eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2369d382aafbSBarry Smith 2370d382aafbSBarry Smith M*/ 2371d382aafbSBarry Smith 2372d382aafbSBarry Smith /*MC 2373d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2374d382aafbSBarry Smith value into that location 2375d382aafbSBarry Smith 2376d382aafbSBarry Smith Level: beginner 2377d382aafbSBarry Smith 2378d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2379eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2380eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2381d382aafbSBarry Smith 2382d382aafbSBarry Smith M*/ 2383d382aafbSBarry Smith 2384d382aafbSBarry Smith /*MC 2385d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2386d382aafbSBarry Smith 2387d382aafbSBarry Smith Level: beginner 2388d382aafbSBarry Smith 2389d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2390d382aafbSBarry Smith 2391d382aafbSBarry Smith M*/ 2392d382aafbSBarry Smith 2393d382aafbSBarry Smith /*S 2394d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2395d382aafbSBarry Smith 2396d382aafbSBarry Smith Level: advanced 2397d382aafbSBarry Smith 2398d382aafbSBarry Smith Concepts: communicator, create 2399d382aafbSBarry Smith S*/ 2400d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2401d382aafbSBarry Smith 2402d382aafbSBarry Smith struct _n_PetscSubcomm { 2403d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2404d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2405d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2406d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2407d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2408d382aafbSBarry Smith }; 2409d382aafbSBarry Smith 2410638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2411638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2412638faf0bSHong Zhang 24137087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2414fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24157087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24167c764164SBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 24177087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2418d382aafbSBarry Smith 241982a7e548SBarry Smith #include <petscctable.h> 242082a7e548SBarry Smith 2421d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24226c7e564aSBarry Smith 24239e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24249e03d832SJed Brown #undef __FUNCT__ 24259e03d832SJed Brown #define __FUNCT__ "User provided function" 24269e03d832SJed Brown 2427d382aafbSBarry Smith #endif 2428