1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46ed938b00SJed Brown #if defined(__cplusplus) 47ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 48ed938b00SJed Brown #else 49ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 50ed938b00SJed Brown #endif 51ed938b00SJed Brown 52ed938b00SJed Brown #if defined(__cplusplus) 53ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 54ed938b00SJed Brown #else 55ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 56ed938b00SJed Brown #endif 57ed938b00SJed Brown 58ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 59014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 60014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 6121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 62014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 63014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 64014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 6521f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 66d382aafbSBarry Smith #else 67014dd563SJed Brown # define PETSC_DLLEXPORT 68014dd563SJed Brown # define PETSC_DLLIMPORT 6921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 70014dd563SJed Brown #endif 71014dd563SJed Brown 72014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 73014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 74014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 75014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 76014dd563SJed Brown #endif 77014dd563SJed Brown 782c280183SJed Brown #if defined(__cplusplus) 79014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 80638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 8121f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 82014dd563SJed Brown #else 83014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 84638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 856258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 86d382aafbSBarry Smith #endif 8727710113SBarry Smith 882c8e378dSBarry Smith #include <petscversion.h> 89301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 90d382aafbSBarry Smith 91d382aafbSBarry Smith /* ========================================================================== */ 92d382aafbSBarry Smith 93d382aafbSBarry Smith /* 94d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 95d382aafbSBarry Smith 96d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 97d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 98d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 99d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 100d382aafbSBarry Smith mpicxx.h directly in their code 101d382aafbSBarry Smith */ 102fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 103d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 104fa9e63e2SJed Brown #endif 105fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 106d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 107fa9e63e2SJed Brown #endif 1082c8e378dSBarry Smith #include <mpi.h> 10965013866SBarry Smith 110d382aafbSBarry Smith /* 111a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 112a7886beaSBarry Smith This usually happens because 113a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 114a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 115a7886beaSBarry Smith */ 116a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 117a7886beaSBarry Smith # if !defined(__MPIUNI_H) 118a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 119a7886beaSBarry Smith # endif 120a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 121a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 122a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 123a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 124a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 125a7886beaSBarry Smith # endif 126a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 127a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 128a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 129c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 130c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 131a7886beaSBarry Smith # endif 132a7886beaSBarry Smith #endif 133a7886beaSBarry Smith 134a7886beaSBarry Smith /* 1352981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 136d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 137d382aafbSBarry Smith */ 138d382aafbSBarry Smith #include <stdio.h> 139d382aafbSBarry Smith 140d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 141d382aafbSBarry Smith #if !defined(MPIAPI) 142d382aafbSBarry Smith #define MPIAPI 143d382aafbSBarry Smith #endif 144d382aafbSBarry Smith 145894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 146894dd566SJed Brown #if defined(__has_attribute) 147894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 148894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1498ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1508ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 151894dd566SJed Brown # endif 152894dd566SJed Brown #endif 153894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 154894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1558ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1568ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 157894dd566SJed Brown #endif 158b3506946SBarry Smith 159d382aafbSBarry Smith /*MC 1601957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 161d382aafbSBarry Smith 162d382aafbSBarry Smith Level: beginner 163d382aafbSBarry Smith 164d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 165d382aafbSBarry Smith M*/ 166d382aafbSBarry Smith typedef int PetscErrorCode; 167d382aafbSBarry Smith 168d382aafbSBarry Smith /*MC 169d382aafbSBarry Smith 170503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 171d382aafbSBarry Smith 1721957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1731957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 1741957e957SBarry Smith 1751957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 1761957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 1771957e957SBarry Smith 1781957e957SBarry Smith Level: developer 179d382aafbSBarry Smith 1800700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 181d382aafbSBarry Smith M*/ 1820700a824SBarry Smith typedef int PetscClassId; 183d382aafbSBarry Smith 184d382aafbSBarry Smith 185d382aafbSBarry Smith /*MC 186d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: intermediate 189d382aafbSBarry Smith 190d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1913b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 192d382aafbSBarry Smith 1934dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1942981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 195d382aafbSBarry Smith 196d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 197d382aafbSBarry Smith 198d382aafbSBarry Smith M*/ 199d382aafbSBarry Smith typedef int PetscMPIInt; 200d382aafbSBarry Smith 201d382aafbSBarry Smith /*MC 202d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 203d382aafbSBarry Smith 204d382aafbSBarry Smith Level: intermediate 205d382aafbSBarry Smith 206d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 207d382aafbSBarry Smith M*/ 208d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2095a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 210d382aafbSBarry Smith 211fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 212fab38c73SJed Brown #include <stdint.h> 213fab38c73SJed Brown #endif 214fab38c73SJed Brown 215d382aafbSBarry Smith /*MC 216d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2173b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 218d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 219d382aafbSBarry Smith 220d382aafbSBarry Smith Level: intermediate 221d382aafbSBarry Smith 222d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 223d382aafbSBarry Smith M*/ 224fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 225fab38c73SJed Brown typedef int64_t Petsc64bitInt; 226fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 227f505b413SSatish Balay typedef long long Petsc64bitInt; 228f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 229236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 230236ed0a3SSatish Balay #else 231f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 232236ed0a3SSatish Balay #endif 233d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 234236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 23541860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 236fab38c73SJed Brown # define MPIU_INT MPI_INT64_T 237fab38c73SJed Brown # else 238d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 239fab38c73SJed Brown # endif 240d382aafbSBarry Smith #else 241d382aafbSBarry Smith typedef int PetscInt; 242d382aafbSBarry Smith #define MPIU_INT MPI_INT 243d382aafbSBarry Smith #endif 244e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 245e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 246e56f5c9eSBarry Smith #else 247e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 248e56f5c9eSBarry Smith #endif 249236ed0a3SSatish Balay 250d382aafbSBarry Smith 251702bc34aSSatish Balay /*MC 252702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 253702bc34aSSatish Balay 254702bc34aSSatish Balay Level: intermediate 255702bc34aSSatish Balay 256702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 257702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 258702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 259702bc34aSSatish Balay 260c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2612981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 262702bc34aSSatish Balay 2632981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 264702bc34aSSatish Balay if you run ./configure with the option 265702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2662981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2672981ebdbSBarry Smith 2682981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2692981ebdbSBarry Smith 2702981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 271702bc34aSSatish Balay 272702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 273702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 274702bc34aSSatish Balay 275702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 276702bc34aSSatish Balay 277702bc34aSSatish Balay M*/ 278702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 279702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 280702bc34aSSatish Balay #else 281702bc34aSSatish Balay typedef int PetscBLASInt; 282702bc34aSSatish Balay #endif 283702bc34aSSatish Balay 28458b60935SBarry Smith /*EC 28558b60935SBarry Smith 2862981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 28758b60935SBarry Smith 28858b60935SBarry Smith Level: advanced 28958b60935SBarry Smith 29058b60935SBarry Smith .seealso: PetscObjectSetPrecision() 29158b60935SBarry Smith E*/ 29258b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 293014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 29458b60935SBarry Smith 295503cfb0cSBarry Smith /* 296503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 297503cfb0cSBarry Smith */ 298d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 299adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 300d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 301adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 302d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 303adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 304d382aafbSBarry Smith #else 305d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 306d382aafbSBarry Smith #endif 307d382aafbSBarry Smith 308d382aafbSBarry Smith 309d382aafbSBarry Smith /* 310d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 311d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 312d382aafbSBarry Smith */ 313014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 314d382aafbSBarry Smith 315d382aafbSBarry Smith /* 316d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 317d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 318d382aafbSBarry Smith */ 319014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 320d382aafbSBarry Smith 321d382aafbSBarry Smith /*MC 322d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 323d382aafbSBarry Smith 324d382aafbSBarry Smith Synopsis: 325aaa7dc30SBarry Smith #include <petscsys.h> 326ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 327d382aafbSBarry Smith 328eca87e8dSBarry Smith Not Collective 329eca87e8dSBarry Smith 330d382aafbSBarry Smith Input Parameters: 331d382aafbSBarry Smith . cond - condition or expression 332d382aafbSBarry Smith 333d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 334d382aafbSBarry Smith branch is unlikely. 335d382aafbSBarry Smith 336d382aafbSBarry Smith Level: advanced 337d382aafbSBarry Smith 338d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 339d382aafbSBarry Smith M*/ 340d382aafbSBarry Smith 341d382aafbSBarry Smith /*MC 342d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 343d382aafbSBarry Smith 344d382aafbSBarry Smith Synopsis: 345aaa7dc30SBarry Smith #include <petscsys.h> 346ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 347d382aafbSBarry Smith 348eca87e8dSBarry Smith Not Collective 349eca87e8dSBarry Smith 350d382aafbSBarry Smith Input Parameters: 351d382aafbSBarry Smith . cond - condition or expression 352d382aafbSBarry Smith 353d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 354d382aafbSBarry Smith branch is likely. 355d382aafbSBarry Smith 356d382aafbSBarry Smith Level: advanced 357d382aafbSBarry Smith 358d382aafbSBarry Smith .seealso: PetscUnlikely() 359d382aafbSBarry Smith M*/ 360d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 361d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 362d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 363d382aafbSBarry Smith #else 364cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 365cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 366d382aafbSBarry Smith #endif 367d382aafbSBarry Smith 368d382aafbSBarry Smith /* 369d382aafbSBarry Smith Declare extern C stuff after including external header files 370d382aafbSBarry Smith */ 371d382aafbSBarry Smith 372d382aafbSBarry Smith 373d382aafbSBarry Smith /* 374d382aafbSBarry Smith Basic PETSc constants 375d382aafbSBarry Smith */ 376d382aafbSBarry Smith 377d382aafbSBarry Smith /*E 378ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 379d382aafbSBarry Smith 380d382aafbSBarry Smith Level: beginner 381d382aafbSBarry Smith 382ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 38334e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 38434e82e7dSBarry Smith 385d382aafbSBarry Smith E*/ 386ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3876a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3885a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 38970b3c8c7SBarry Smith 3908b49ba18SBarry Smith /* 3918b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 3928b49ba18SBarry Smith */ 3938b49ba18SBarry Smith #include <petscmath.h> 3948b49ba18SBarry Smith 39570b3c8c7SBarry Smith /*E 39670b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 39770b3c8c7SBarry Smith 39870b3c8c7SBarry Smith Level: beginner 39970b3c8c7SBarry Smith 40070b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 40170b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 40270b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 40370b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 40470b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 40570b3c8c7SBarry Smith 40670b3c8c7SBarry Smith E*/ 40770b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4086a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 409d382aafbSBarry Smith 410d382aafbSBarry Smith /*MC 411ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 412d382aafbSBarry Smith 413d382aafbSBarry Smith Level: beginner 414d382aafbSBarry Smith 415d382aafbSBarry Smith Note: Zero integer 416d382aafbSBarry Smith 417ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 418d382aafbSBarry Smith M*/ 419d382aafbSBarry Smith 420d382aafbSBarry Smith /*MC 421ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 422d382aafbSBarry Smith 423d382aafbSBarry Smith Level: beginner 424d382aafbSBarry Smith 425d382aafbSBarry Smith Note: Nonzero integer 426d382aafbSBarry Smith 427ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 428d382aafbSBarry Smith M*/ 429d382aafbSBarry Smith 430d382aafbSBarry Smith /*MC 4310298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 432d382aafbSBarry Smith 433d382aafbSBarry Smith Level: beginner 434d382aafbSBarry Smith 435d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 436d382aafbSBarry Smith some default 437d382aafbSBarry Smith 438d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 439503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 440d382aafbSBarry Smith 441d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 442d382aafbSBarry Smith 443d382aafbSBarry Smith M*/ 4443bcbec90SJed Brown #define PETSC_NULL NULL 445d382aafbSBarry Smith 446d382aafbSBarry Smith /*MC 4470298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 448d382aafbSBarry Smith 449d382aafbSBarry Smith Level: beginner 450d382aafbSBarry Smith 451d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 452d382aafbSBarry Smith some default 453d382aafbSBarry Smith 454d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 455d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 456d382aafbSBarry Smith 457d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 458d382aafbSBarry Smith 459d382aafbSBarry Smith M*/ 4600298fd71SBarry Smith #define PETSC_IGNORE NULL 461d382aafbSBarry Smith 462d382aafbSBarry Smith /*MC 463557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 464557d4da8SBarry Smith where you wish PETSc to use the default. 465557d4da8SBarry Smith 466557d4da8SBarry Smith Level: beginner 467557d4da8SBarry Smith 468557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 469557d4da8SBarry Smith 470557d4da8SBarry Smith M*/ 471557d4da8SBarry Smith #define PETSC_DECIDE -1 472557d4da8SBarry Smith 473557d4da8SBarry Smith /*MC 474d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 475d382aafbSBarry Smith where you wish PETSc to compute the required value. 476d382aafbSBarry Smith 477d382aafbSBarry Smith Level: beginner 478d382aafbSBarry Smith 479557d4da8SBarry Smith 480557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 481557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 482557d4da8SBarry Smith 4830298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 484d382aafbSBarry Smith 485d382aafbSBarry Smith M*/ 486d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 487d382aafbSBarry Smith 488d382aafbSBarry Smith /*MC 489557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 490557d4da8SBarry Smith where you wish PETSc to use the default. 491557d4da8SBarry Smith 492557d4da8SBarry Smith Level: beginner 493557d4da8SBarry Smith 4942d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 495557d4da8SBarry Smith 4960298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 497557d4da8SBarry Smith 498557d4da8SBarry Smith M*/ 499557d4da8SBarry Smith #define PETSC_DEFAULT -2 500557d4da8SBarry Smith 501557d4da8SBarry Smith /*MC 502d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 503d382aafbSBarry Smith all the processs that PETSc knows about. 504d382aafbSBarry Smith 505d382aafbSBarry Smith Level: beginner 506d382aafbSBarry Smith 507d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 508d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 509d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 510d382aafbSBarry Smith PetscInitialize() 511d382aafbSBarry Smith 512d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 513d382aafbSBarry Smith 514d382aafbSBarry Smith M*/ 515014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 516d382aafbSBarry Smith 517d382aafbSBarry Smith /*MC 518503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 519d382aafbSBarry Smith 520d382aafbSBarry Smith Level: beginner 521d382aafbSBarry Smith 522d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 523d382aafbSBarry Smith 524d382aafbSBarry Smith M*/ 525d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 526d382aafbSBarry Smith 527d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 528014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 529014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 530014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5314cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 532d382aafbSBarry Smith 533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 536d382aafbSBarry Smith 537d382aafbSBarry Smith /*MC 538d382aafbSBarry Smith PetscMalloc - Allocates memory 539d382aafbSBarry Smith 540eca87e8dSBarry Smith Synopsis: 541aaa7dc30SBarry Smith #include <petscsys.h> 542eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 543eca87e8dSBarry Smith 544eca87e8dSBarry Smith Not Collective 545eca87e8dSBarry Smith 546d382aafbSBarry Smith Input Parameter: 547d382aafbSBarry Smith . m - number of bytes to allocate 548d382aafbSBarry Smith 549d382aafbSBarry Smith Output Parameter: 550d382aafbSBarry Smith . result - memory allocated 551d382aafbSBarry Smith 552d382aafbSBarry Smith Level: beginner 553d382aafbSBarry Smith 55449d7da52SJed Brown Notes: 55549d7da52SJed Brown Memory is always allocated at least double aligned 556d382aafbSBarry Smith 55749d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 558d382aafbSBarry Smith 559d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 560d382aafbSBarry Smith 561d382aafbSBarry Smith Concepts: memory allocation 562d382aafbSBarry Smith 563d382aafbSBarry Smith M*/ 56449d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 565d382aafbSBarry Smith 566d382aafbSBarry Smith /*MC 567503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 568d382aafbSBarry Smith 569d382aafbSBarry Smith Synopsis: 570aaa7dc30SBarry Smith #include <petscsys.h> 571d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 572d382aafbSBarry Smith 573eca87e8dSBarry Smith Not Collective 574eca87e8dSBarry Smith 575eca87e8dSBarry Smith Input Parameters: 576eca87e8dSBarry Smith . addr - address to align (any pointer type) 577eca87e8dSBarry Smith 578d382aafbSBarry Smith Level: developer 579d382aafbSBarry Smith 580d382aafbSBarry Smith .seealso: PetscMallocAlign() 581d382aafbSBarry Smith 582d382aafbSBarry Smith Concepts: memory allocation 583d382aafbSBarry Smith M*/ 584d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 585d382aafbSBarry Smith 586d382aafbSBarry Smith /*MC 587785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 588d382aafbSBarry Smith 589eca87e8dSBarry Smith Synopsis: 590aaa7dc30SBarry Smith #include <petscsys.h> 591785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 592785e854fSJed Brown 593785e854fSJed Brown Not Collective 594785e854fSJed Brown 595785e854fSJed Brown Input Parameter: 596785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 597785e854fSJed Brown 598785e854fSJed Brown Output Parameter: 599785e854fSJed Brown . r1 - memory allocated in first chunk 600785e854fSJed Brown 601785e854fSJed Brown Level: developer 602785e854fSJed Brown 6031795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 604785e854fSJed Brown 605785e854fSJed Brown Concepts: memory allocation 606785e854fSJed Brown 607785e854fSJed Brown M*/ 608e1287589SMatthew G. Knepley #define PetscMalloc1(m1,r1) ((m1) ? PetscMalloc((m1)*sizeof(**(r1)),r1) : (*(r1) = 0,0)) 609785e854fSJed Brown 610785e854fSJed Brown /*MC 6111795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6121795a4d1SJed Brown 6131795a4d1SJed Brown Synopsis: 614aaa7dc30SBarry Smith #include <petscsys.h> 6151795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6161795a4d1SJed Brown 6171795a4d1SJed Brown Not Collective 6181795a4d1SJed Brown 6191795a4d1SJed Brown Input Parameter: 6201795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6211795a4d1SJed Brown 6221795a4d1SJed Brown Output Parameter: 6231795a4d1SJed Brown . r1 - memory allocated in first chunk 6241795a4d1SJed Brown 6251795a4d1SJed Brown Level: developer 6261795a4d1SJed Brown 6271795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6281795a4d1SJed Brown 6291795a4d1SJed Brown Concepts: memory allocation 6301795a4d1SJed Brown 6311795a4d1SJed Brown M*/ 6321795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6331795a4d1SJed Brown 6341795a4d1SJed Brown /*MC 635dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 636d382aafbSBarry Smith 637eca87e8dSBarry Smith Synopsis: 638aaa7dc30SBarry Smith #include <petscsys.h> 639dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 640eca87e8dSBarry Smith 641eca87e8dSBarry Smith Not Collective 642eca87e8dSBarry Smith 643d382aafbSBarry Smith Input Parameter: 644d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 645dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 646d382aafbSBarry Smith 647d382aafbSBarry Smith Output Parameter: 648d382aafbSBarry Smith + r1 - memory allocated in first chunk 649d382aafbSBarry Smith - r2 - memory allocated in second chunk 650d382aafbSBarry Smith 651d382aafbSBarry Smith Level: developer 652d382aafbSBarry Smith 6531795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 654d382aafbSBarry Smith 655d382aafbSBarry Smith Concepts: memory allocation 656d382aafbSBarry Smith 657d382aafbSBarry Smith M*/ 65820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6591d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 660d382aafbSBarry Smith #else 661ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 662ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6633589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 664d382aafbSBarry Smith #endif 665d382aafbSBarry Smith 666d382aafbSBarry Smith /*MC 6671795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 668d382aafbSBarry Smith 669eca87e8dSBarry Smith Synopsis: 670aaa7dc30SBarry Smith #include <petscsys.h> 6711795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 672eca87e8dSBarry Smith 673eca87e8dSBarry Smith Not Collective 674eca87e8dSBarry Smith 675d382aafbSBarry Smith Input Parameter: 676d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6771795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6781795a4d1SJed Brown 6791795a4d1SJed Brown Output Parameter: 6801795a4d1SJed Brown + r1 - memory allocated in first chunk 6811795a4d1SJed Brown - r2 - memory allocated in second chunk 6821795a4d1SJed Brown 6831795a4d1SJed Brown Level: developer 6841795a4d1SJed Brown 6851795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 6861795a4d1SJed Brown 6871795a4d1SJed Brown Concepts: memory allocation 6881795a4d1SJed Brown M*/ 6891795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 6901795a4d1SJed Brown 6911795a4d1SJed Brown /*MC 692dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 693d382aafbSBarry Smith 694d382aafbSBarry Smith Synopsis: 695aaa7dc30SBarry Smith #include <petscsys.h> 696dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 697d382aafbSBarry Smith 698d382aafbSBarry Smith Not Collective 699d382aafbSBarry Smith 700d382aafbSBarry Smith Input Parameter: 701d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 702d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 703dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 704d382aafbSBarry Smith 705d382aafbSBarry Smith Output Parameter: 706d382aafbSBarry Smith + r1 - memory allocated in first chunk 707d382aafbSBarry Smith . r2 - memory allocated in second chunk 708d382aafbSBarry Smith - r3 - memory allocated in third chunk 709d382aafbSBarry Smith 710d382aafbSBarry Smith Level: developer 711d382aafbSBarry Smith 7121795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 713d382aafbSBarry Smith 714d382aafbSBarry Smith Concepts: memory allocation 715d382aafbSBarry Smith 716d382aafbSBarry Smith M*/ 71720a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7181d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 719d382aafbSBarry Smith #else 720ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 721278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7223589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 723d382aafbSBarry Smith #endif 724d382aafbSBarry Smith 725d382aafbSBarry Smith /*MC 7261795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 727d382aafbSBarry Smith 728eca87e8dSBarry Smith Synopsis: 729aaa7dc30SBarry Smith #include <petscsys.h> 7301795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 731eca87e8dSBarry Smith 732eca87e8dSBarry Smith Not Collective 733eca87e8dSBarry Smith 734d382aafbSBarry Smith Input Parameter: 735d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 736d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7371795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7381795a4d1SJed Brown 7391795a4d1SJed Brown Output Parameter: 7401795a4d1SJed Brown + r1 - memory allocated in first chunk 7411795a4d1SJed Brown . r2 - memory allocated in second chunk 7421795a4d1SJed Brown - r3 - memory allocated in third chunk 7431795a4d1SJed Brown 7441795a4d1SJed Brown Level: developer 7451795a4d1SJed Brown 7461795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7471795a4d1SJed Brown 7481795a4d1SJed Brown Concepts: memory allocation 7491795a4d1SJed Brown M*/ 7501795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7511795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7521795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7531795a4d1SJed Brown 7541795a4d1SJed Brown /*MC 755dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 756d382aafbSBarry Smith 757d382aafbSBarry Smith Synopsis: 758aaa7dc30SBarry Smith #include <petscsys.h> 759dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 760d382aafbSBarry Smith 761d382aafbSBarry Smith Not Collective 762d382aafbSBarry Smith 763d382aafbSBarry Smith Input Parameter: 764d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 765d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 766d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 767dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 768d382aafbSBarry Smith 769d382aafbSBarry Smith Output Parameter: 770d382aafbSBarry Smith + r1 - memory allocated in first chunk 771d382aafbSBarry Smith . r2 - memory allocated in second chunk 772d382aafbSBarry Smith . r3 - memory allocated in third chunk 773d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 774d382aafbSBarry Smith 775d382aafbSBarry Smith Level: developer 776d382aafbSBarry Smith 7771795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 778d382aafbSBarry Smith 779d382aafbSBarry Smith Concepts: memory allocation 780d382aafbSBarry Smith 781d382aafbSBarry Smith M*/ 78220a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7831d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 784d382aafbSBarry Smith #else 785dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 786ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 787278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 7883589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 789d382aafbSBarry Smith #endif 790d382aafbSBarry Smith 791d382aafbSBarry Smith /*MC 7921795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 793d382aafbSBarry Smith 794eca87e8dSBarry Smith Synopsis: 795aaa7dc30SBarry Smith #include <petscsys.h> 7961795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 797eca87e8dSBarry Smith 798eca87e8dSBarry Smith Not Collective 799eca87e8dSBarry Smith 800d382aafbSBarry Smith Input Parameter: 801d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 802d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 803d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8041795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8051795a4d1SJed Brown 8061795a4d1SJed Brown Output Parameter: 8071795a4d1SJed Brown + r1 - memory allocated in first chunk 8081795a4d1SJed Brown . r2 - memory allocated in second chunk 8091795a4d1SJed Brown . r3 - memory allocated in third chunk 8101795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8111795a4d1SJed Brown 8121795a4d1SJed Brown Level: developer 8131795a4d1SJed Brown 8141795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8151795a4d1SJed Brown 8161795a4d1SJed Brown Concepts: memory allocation 8171795a4d1SJed Brown 8181795a4d1SJed Brown M*/ 8191795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8201795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8211795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8221795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8231795a4d1SJed Brown 8241795a4d1SJed Brown /*MC 825dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 826d382aafbSBarry Smith 827d382aafbSBarry Smith Synopsis: 828aaa7dc30SBarry Smith #include <petscsys.h> 829dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 830d382aafbSBarry Smith 831d382aafbSBarry Smith Not Collective 832d382aafbSBarry Smith 833d382aafbSBarry Smith Input Parameter: 834d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 835d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 836d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 837d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 838dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 839d382aafbSBarry Smith 840d382aafbSBarry Smith Output Parameter: 841d382aafbSBarry Smith + r1 - memory allocated in first chunk 842d382aafbSBarry Smith . r2 - memory allocated in second chunk 843d382aafbSBarry Smith . r3 - memory allocated in third chunk 844d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 845d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 846d382aafbSBarry Smith 847d382aafbSBarry Smith Level: developer 848d382aafbSBarry Smith 8491795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 850d382aafbSBarry Smith 851d382aafbSBarry Smith Concepts: memory allocation 852d382aafbSBarry Smith 853d382aafbSBarry Smith M*/ 85420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8551d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 856d382aafbSBarry Smith #else 857dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 858ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 859278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8603589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 861d382aafbSBarry Smith #endif 862d382aafbSBarry Smith 863d382aafbSBarry Smith /*MC 8641795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 865d382aafbSBarry Smith 866eca87e8dSBarry Smith Synopsis: 867aaa7dc30SBarry Smith #include <petscsys.h> 8681795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 869eca87e8dSBarry Smith 870eca87e8dSBarry Smith Not Collective 871eca87e8dSBarry Smith 872d382aafbSBarry Smith Input Parameter: 873d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 874d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 875d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 876d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 8771795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8781795a4d1SJed Brown 8791795a4d1SJed Brown Output Parameter: 8801795a4d1SJed Brown + r1 - memory allocated in first chunk 8811795a4d1SJed Brown . r2 - memory allocated in second chunk 8821795a4d1SJed Brown . r3 - memory allocated in third chunk 8831795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8841795a4d1SJed Brown - r5 - memory allocated in fifth chunk 8851795a4d1SJed Brown 8861795a4d1SJed Brown Level: developer 8871795a4d1SJed Brown 8881795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 8891795a4d1SJed Brown 8901795a4d1SJed Brown Concepts: memory allocation 8911795a4d1SJed Brown 8921795a4d1SJed Brown M*/ 8931795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8941795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 8951795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8961795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 897d382aafbSBarry Smith 898d382aafbSBarry Smith /*MC 899dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 900d382aafbSBarry Smith 901d382aafbSBarry Smith Synopsis: 902aaa7dc30SBarry Smith #include <petscsys.h> 903dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 904d382aafbSBarry Smith 905d382aafbSBarry Smith Not Collective 906d382aafbSBarry Smith 907d382aafbSBarry Smith Input Parameter: 908d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 909d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 910d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 911d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 912d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 913dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 914d382aafbSBarry Smith 915d382aafbSBarry Smith Output Parameter: 916d382aafbSBarry Smith + r1 - memory allocated in first chunk 917d382aafbSBarry Smith . r2 - memory allocated in second chunk 918d382aafbSBarry Smith . r3 - memory allocated in third chunk 919d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 920d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 921d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 922d382aafbSBarry Smith 923d382aafbSBarry Smith Level: developer 924d382aafbSBarry Smith 9251795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 926d382aafbSBarry Smith 927d382aafbSBarry Smith Concepts: memory allocation 928d382aafbSBarry Smith 929d382aafbSBarry Smith M*/ 93020a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9311d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 932d382aafbSBarry Smith #else 933dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 934ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 935278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9363589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 937d382aafbSBarry Smith #endif 938d382aafbSBarry Smith 939d382aafbSBarry Smith /*MC 9401795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 941d382aafbSBarry Smith 942eca87e8dSBarry Smith Synopsis: 943aaa7dc30SBarry Smith #include <petscsys.h> 9441795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 945eca87e8dSBarry Smith 946eca87e8dSBarry Smith Not Collective 947eca87e8dSBarry Smith 948d382aafbSBarry Smith Input Parameter: 949d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 950d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 951d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 952d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 953d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9541795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9551795a4d1SJed Brown 9561795a4d1SJed Brown Output Parameter: 9571795a4d1SJed Brown + r1 - memory allocated in first chunk 9581795a4d1SJed Brown . r2 - memory allocated in second chunk 9591795a4d1SJed Brown . r3 - memory allocated in third chunk 9601795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9611795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9621795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9631795a4d1SJed Brown 9641795a4d1SJed Brown Level: developer 9651795a4d1SJed Brown 9661795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9671795a4d1SJed Brown 9681795a4d1SJed Brown Concepts: memory allocation 9691795a4d1SJed Brown M*/ 9701795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9711795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9721795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9731795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9741795a4d1SJed Brown 9751795a4d1SJed Brown /*MC 976dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 977d382aafbSBarry Smith 978d382aafbSBarry Smith Synopsis: 979aaa7dc30SBarry Smith #include <petscsys.h> 980dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 981d382aafbSBarry Smith 982d382aafbSBarry Smith Not Collective 983d382aafbSBarry Smith 984d382aafbSBarry Smith Input Parameter: 985d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 986d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 987d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 988d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 989d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 990d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 991dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 992d382aafbSBarry Smith 993d382aafbSBarry Smith Output Parameter: 994d382aafbSBarry Smith + r1 - memory allocated in first chunk 995d382aafbSBarry Smith . r2 - memory allocated in second chunk 996d382aafbSBarry Smith . r3 - memory allocated in third chunk 997d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 998d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 999d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1000eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1001d382aafbSBarry Smith 1002d382aafbSBarry Smith Level: developer 1003d382aafbSBarry Smith 10041795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1005d382aafbSBarry Smith 1006d382aafbSBarry Smith Concepts: memory allocation 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith M*/ 100920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10101d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1011d382aafbSBarry Smith #else 1012dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1013ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1014278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10153589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1016d382aafbSBarry Smith #endif 1017d382aafbSBarry Smith 1018d382aafbSBarry Smith /*MC 10191795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10201795a4d1SJed Brown 10211795a4d1SJed Brown Synopsis: 1022aaa7dc30SBarry Smith #include <petscsys.h> 10231795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10241795a4d1SJed Brown 10251795a4d1SJed Brown Not Collective 10261795a4d1SJed Brown 10271795a4d1SJed Brown Input Parameter: 10281795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10291795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10301795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10311795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10321795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10331795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10341795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10351795a4d1SJed Brown 10361795a4d1SJed Brown Output Parameter: 10371795a4d1SJed Brown + r1 - memory allocated in first chunk 10381795a4d1SJed Brown . r2 - memory allocated in second chunk 10391795a4d1SJed Brown . r3 - memory allocated in third chunk 10401795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10411795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10421795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10431795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10441795a4d1SJed Brown 10451795a4d1SJed Brown Level: developer 10461795a4d1SJed Brown 10471795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10481795a4d1SJed Brown 10491795a4d1SJed Brown Concepts: memory allocation 10501795a4d1SJed Brown M*/ 10511795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10527ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10531795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10541795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10557ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10561795a4d1SJed Brown 10571795a4d1SJed Brown /*MC 1058503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1059d382aafbSBarry Smith 1060eca87e8dSBarry Smith Synopsis: 1061aaa7dc30SBarry Smith #include <petscsys.h> 1062b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1063eca87e8dSBarry Smith 1064eca87e8dSBarry Smith Not Collective 1065eca87e8dSBarry Smith 1066d382aafbSBarry Smith Output Parameter: 1067b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1068d382aafbSBarry Smith 1069d382aafbSBarry Smith Level: beginner 1070d382aafbSBarry Smith 1071ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1072d382aafbSBarry Smith 1073d382aafbSBarry Smith Concepts: memory allocation 1074d382aafbSBarry Smith 1075d382aafbSBarry Smith M*/ 1076b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1077ad0619ddSBarry Smith 1078ad0619ddSBarry Smith /*MC 1079b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1080ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1081ad0619ddSBarry Smith 1082ad0619ddSBarry Smith Synopsis: 1083aaa7dc30SBarry Smith #include <petscsys.h> 1084b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1085ad0619ddSBarry Smith 1086ad0619ddSBarry Smith Not Collective 1087ad0619ddSBarry Smith 1088ad0619ddSBarry Smith Input Parameter: 1089b00a9115SJed Brown . obj - object memory is logged to 1090ad0619ddSBarry Smith 1091ad0619ddSBarry Smith Output Parameter: 1092b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1093ad0619ddSBarry Smith 1094ad0619ddSBarry Smith Level: developer 1095ad0619ddSBarry Smith 1096ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1097ad0619ddSBarry Smith 1098ad0619ddSBarry Smith Concepts: memory allocation 1099ad0619ddSBarry Smith 1100ad0619ddSBarry Smith M*/ 1101b00a9115SJed Brown #define PetscNewLog(o,b) (PetscNew((b)) || ((o) ? PetscLogObjectMemory((PetscObject)o,sizeof(**(b))) : 0)) 1102d382aafbSBarry Smith 1103d382aafbSBarry Smith /*MC 1104d382aafbSBarry Smith PetscFree - Frees memory 1105d382aafbSBarry Smith 1106eca87e8dSBarry Smith Synopsis: 1107aaa7dc30SBarry Smith #include <petscsys.h> 1108eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1109eca87e8dSBarry Smith 1110eca87e8dSBarry Smith Not Collective 1111eca87e8dSBarry Smith 1112d382aafbSBarry Smith Input Parameter: 1113d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1114d382aafbSBarry Smith 1115d382aafbSBarry Smith Level: beginner 1116d382aafbSBarry Smith 111749d7da52SJed Brown Notes: 111849d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 111949d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1120d382aafbSBarry Smith 1121d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1122d382aafbSBarry Smith 1123d382aafbSBarry Smith Concepts: memory allocation 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith M*/ 112649d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith /*MC 1129d382aafbSBarry Smith PetscFreeVoid - Frees memory 1130d382aafbSBarry Smith 1131d382aafbSBarry Smith Synopsis: 1132aaa7dc30SBarry Smith #include <petscsys.h> 1133d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1134d382aafbSBarry Smith 1135eca87e8dSBarry Smith Not Collective 1136eca87e8dSBarry Smith 1137eca87e8dSBarry Smith Input Parameter: 1138eca87e8dSBarry Smith . memory - memory to free 1139eca87e8dSBarry Smith 1140d382aafbSBarry Smith Level: beginner 1141d382aafbSBarry Smith 1142d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1143d382aafbSBarry Smith 1144d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1145d382aafbSBarry Smith 1146d382aafbSBarry Smith Concepts: memory allocation 1147d382aafbSBarry Smith 1148d382aafbSBarry Smith M*/ 1149efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1150d382aafbSBarry Smith 1151d382aafbSBarry Smith 1152d382aafbSBarry Smith /*MC 1153d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1154d382aafbSBarry Smith 1155eca87e8dSBarry Smith Synopsis: 1156aaa7dc30SBarry Smith #include <petscsys.h> 1157eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1158eca87e8dSBarry Smith 1159eca87e8dSBarry Smith Not Collective 1160eca87e8dSBarry Smith 1161d382aafbSBarry Smith Input Parameter: 1162d382aafbSBarry Smith + memory1 - memory to free 1163d382aafbSBarry Smith - memory2 - 2nd memory to free 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith Level: developer 1166d382aafbSBarry Smith 1167d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1168d382aafbSBarry Smith 1169d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1170d382aafbSBarry Smith 1171d382aafbSBarry Smith Concepts: memory allocation 1172d382aafbSBarry Smith 1173d382aafbSBarry Smith M*/ 1174b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1175d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1176d382aafbSBarry Smith #else 1177e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1178d382aafbSBarry Smith #endif 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith /*MC 1181d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1182d382aafbSBarry Smith 1183eca87e8dSBarry Smith Synopsis: 1184aaa7dc30SBarry Smith #include <petscsys.h> 1185eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1186eca87e8dSBarry Smith 1187eca87e8dSBarry Smith Not Collective 1188eca87e8dSBarry Smith 1189d382aafbSBarry Smith Input Parameter: 1190d382aafbSBarry Smith + memory1 - memory to free 1191d382aafbSBarry Smith . memory2 - 2nd memory to free 1192d382aafbSBarry Smith - memory3 - 3rd memory to free 1193d382aafbSBarry Smith 1194d382aafbSBarry Smith Level: developer 1195d382aafbSBarry Smith 1196d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1197d382aafbSBarry Smith 1198d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1199d382aafbSBarry Smith 1200d382aafbSBarry Smith Concepts: memory allocation 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith M*/ 1203b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1204d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1205d382aafbSBarry Smith #else 1206e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1207d382aafbSBarry Smith #endif 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith /*MC 1210d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1211d382aafbSBarry Smith 1212eca87e8dSBarry Smith Synopsis: 1213aaa7dc30SBarry Smith #include <petscsys.h> 1214eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1215eca87e8dSBarry Smith 1216eca87e8dSBarry Smith Not Collective 1217eca87e8dSBarry Smith 1218d382aafbSBarry Smith Input Parameter: 1219d382aafbSBarry Smith + m1 - memory to free 1220d382aafbSBarry Smith . m2 - 2nd memory to free 1221d382aafbSBarry Smith . m3 - 3rd memory to free 1222d382aafbSBarry Smith - m4 - 4th memory to free 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith Level: developer 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith Concepts: memory allocation 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith M*/ 1233b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1234d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1235d382aafbSBarry Smith #else 1236e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1237d382aafbSBarry Smith #endif 1238d382aafbSBarry Smith 1239d382aafbSBarry Smith /*MC 1240d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1241d382aafbSBarry Smith 1242eca87e8dSBarry Smith Synopsis: 1243aaa7dc30SBarry Smith #include <petscsys.h> 1244eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1245eca87e8dSBarry Smith 1246eca87e8dSBarry Smith Not Collective 1247eca87e8dSBarry Smith 1248d382aafbSBarry Smith Input Parameter: 1249d382aafbSBarry Smith + m1 - memory to free 1250d382aafbSBarry Smith . m2 - 2nd memory to free 1251d382aafbSBarry Smith . m3 - 3rd memory to free 1252d382aafbSBarry Smith . m4 - 4th memory to free 1253d382aafbSBarry Smith - m5 - 5th memory to free 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith Level: developer 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1258d382aafbSBarry Smith 1259d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1260d382aafbSBarry Smith 1261d382aafbSBarry Smith Concepts: memory allocation 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith M*/ 1264b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1265d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1266d382aafbSBarry Smith #else 1267e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1268e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1269d382aafbSBarry Smith #endif 1270d382aafbSBarry Smith 1271d382aafbSBarry Smith 1272d382aafbSBarry Smith /*MC 1273d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1274d382aafbSBarry Smith 1275eca87e8dSBarry Smith Synopsis: 1276aaa7dc30SBarry Smith #include <petscsys.h> 1277eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1278eca87e8dSBarry Smith 1279eca87e8dSBarry Smith Not Collective 1280eca87e8dSBarry Smith 1281d382aafbSBarry Smith Input Parameter: 1282d382aafbSBarry Smith + m1 - memory to free 1283d382aafbSBarry Smith . m2 - 2nd memory to free 1284d382aafbSBarry Smith . m3 - 3rd memory to free 1285d382aafbSBarry Smith . m4 - 4th memory to free 1286d382aafbSBarry Smith . m5 - 5th memory to free 1287d382aafbSBarry Smith - m6 - 6th memory to free 1288d382aafbSBarry Smith 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith Level: developer 1291d382aafbSBarry Smith 1292d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1293d382aafbSBarry Smith 1294d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith Concepts: memory allocation 1297d382aafbSBarry Smith 1298d382aafbSBarry Smith M*/ 1299b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1300d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1301d382aafbSBarry Smith #else 1302e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1303e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1304e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1305d382aafbSBarry Smith #endif 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith /*MC 1308d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1309d382aafbSBarry Smith 1310eca87e8dSBarry Smith Synopsis: 1311aaa7dc30SBarry Smith #include <petscsys.h> 1312eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1313eca87e8dSBarry Smith 1314eca87e8dSBarry Smith Not Collective 1315eca87e8dSBarry Smith 1316d382aafbSBarry Smith Input Parameter: 1317d382aafbSBarry Smith + m1 - memory to free 1318d382aafbSBarry Smith . m2 - 2nd memory to free 1319d382aafbSBarry Smith . m3 - 3rd memory to free 1320d382aafbSBarry Smith . m4 - 4th memory to free 1321d382aafbSBarry Smith . m5 - 5th memory to free 1322d382aafbSBarry Smith . m6 - 6th memory to free 1323d382aafbSBarry Smith - m7 - 7th memory to free 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith 1326d382aafbSBarry Smith Level: developer 1327d382aafbSBarry Smith 1328d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1331d382aafbSBarry Smith PetscMalloc7() 1332d382aafbSBarry Smith 1333d382aafbSBarry Smith Concepts: memory allocation 1334d382aafbSBarry Smith 1335d382aafbSBarry Smith M*/ 1336b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1337d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1338d382aafbSBarry Smith #else 1339e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1340e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 134106c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1342e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1343d382aafbSBarry Smith #endif 1344d382aafbSBarry Smith 1345efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1346efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1347efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1349d382aafbSBarry Smith 1350d382aafbSBarry Smith /* 1351a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1352a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1353a5057860SBarry Smith timing etc. 1354a5057860SBarry Smith */ 1355a5057860SBarry Smith typedef double PetscLogDouble; 1356a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1357a5057860SBarry Smith 1358a5057860SBarry Smith /* 135966d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1360d382aafbSBarry Smith */ 1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13660acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1367efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1369574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1371d382aafbSBarry Smith 1372d382aafbSBarry Smith /*E 1373d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1374d382aafbSBarry Smith 1375d382aafbSBarry Smith Level: beginner 1376d382aafbSBarry Smith 1377d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1378d382aafbSBarry Smith 1379d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1380d382aafbSBarry Smith PetscDataTypeGetSize() 1381d382aafbSBarry Smith 1382d382aafbSBarry Smith E*/ 1383d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13847e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 13856a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1386d382aafbSBarry Smith 1387d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1388d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1389d382aafbSBarry Smith #else 1390ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1391d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 139259a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 139359a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1394d382aafbSBarry Smith #else 1395d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1396d382aafbSBarry Smith #endif 1397d382aafbSBarry Smith #endif 1398ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1399d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 140059a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 140159a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1402d382aafbSBarry Smith #else 1403d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1404d382aafbSBarry Smith #endif 1405d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1406d382aafbSBarry Smith 1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1408014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14108e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1411d382aafbSBarry Smith 1412d382aafbSBarry Smith /* 1413d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1414d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1415d382aafbSBarry Smith functionality and/or error checking. 1416d382aafbSBarry Smith */ 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1421d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1428014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14332f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14382c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 144147340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14426fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1444d382aafbSBarry Smith 1445573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1446573b0fb4SBarry Smith 1447d382aafbSBarry Smith /*S 1448d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1449d382aafbSBarry Smith 1450d382aafbSBarry Smith Level: intermediate 1451d382aafbSBarry Smith 1452d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1453d382aafbSBarry Smith S*/ 1454d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1455d382aafbSBarry Smith 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1459d382aafbSBarry Smith 1460a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1461a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1462a53986e1SJed Brown 1463d382aafbSBarry Smith /* 1464d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1465d382aafbSBarry Smith */ 1466014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14677c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1468014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14692414b3c7SJed Brown #else 14702414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14712414b3c7SJed Brown #endif 14722414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1473014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1474014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1475d9822059SBarry Smith #else 1476d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1477d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1478d9822059SBarry Smith #endif 1479014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1480d382aafbSBarry Smith 1481014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1482014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1483eb3f98d2SBarry Smith 1484d382aafbSBarry Smith /*S 1485d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1486d382aafbSBarry Smith 1487d382aafbSBarry Smith Level: beginner 1488d382aafbSBarry Smith 14892981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1490d382aafbSBarry Smith 14911890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1492d382aafbSBarry Smith S*/ 1493d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1494d382aafbSBarry Smith 1495270bf2e7SJed Brown /*MC 1496127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1497127c8a3bSJed Brown 1498127c8a3bSJed Brown Level: developer 1499127c8a3bSJed Brown 1500127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1501127c8a3bSJed Brown 1502127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1503127c8a3bSJed Brown M*/ 1504127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1505127c8a3bSJed Brown 1506127c8a3bSJed Brown /*MC 1507270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1508270bf2e7SJed Brown 1509270bf2e7SJed Brown Level: developer 1510270bf2e7SJed Brown 1511270bf2e7SJed Brown Notes: 1512270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1513270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1514270bf2e7SJed Brown 15158dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1516270bf2e7SJed Brown M*/ 1517270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1518270bf2e7SJed Brown 1519d382aafbSBarry Smith /*S 1520140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1521d382aafbSBarry Smith by string name 1522d382aafbSBarry Smith 1523d382aafbSBarry Smith Level: advanced 1524d382aafbSBarry Smith 1525140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1526d382aafbSBarry Smith S*/ 1527140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1528d382aafbSBarry Smith 1529d382aafbSBarry Smith /*E 1530d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1531d382aafbSBarry Smith 1532d382aafbSBarry Smith Level: beginner 1533d382aafbSBarry Smith 1534d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1535d382aafbSBarry Smith 1536d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1537d382aafbSBarry Smith 1538d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1539d382aafbSBarry Smith 1540d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1541d382aafbSBarry Smith 1542d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1543d382aafbSBarry Smith 1544d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1545d382aafbSBarry Smith E*/ 1546d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1547d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1548d6a4318aSJed Brown 1549639ff905SBarry Smith /* 1550639ff905SBarry Smith Defines PETSc error handling. 1551639ff905SBarry Smith */ 1552639ff905SBarry Smith #include <petscerror.h> 1553d382aafbSBarry Smith 15540700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1555014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1556014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1558d382aafbSBarry Smith 1559d382aafbSBarry Smith /* 1560d382aafbSBarry Smith Routines that get memory usage information from the OS 1561d382aafbSBarry Smith */ 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1565b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1566d382aafbSBarry Smith 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1569d382aafbSBarry Smith 1570d382aafbSBarry Smith /* 1571d382aafbSBarry Smith Initialization of PETSc 1572d382aafbSBarry Smith */ 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1581014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1583d382aafbSBarry Smith 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1585607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1586d382aafbSBarry Smith 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1591d382aafbSBarry Smith 1592d382aafbSBarry Smith /* 1593d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 15942981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1595d382aafbSBarry Smith */ 1596638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1597638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1598638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1599d382aafbSBarry Smith 1600d382aafbSBarry Smith /* 1601d382aafbSBarry Smith Functions that can act on any PETSc object. 1602d382aafbSBarry Smith */ 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1617014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1622bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1623bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1631d382aafbSBarry Smith 1632665c2dedSJed Brown #include <petscviewertypes.h> 1633639ff905SBarry Smith #include <petscoptions.h> 1634639ff905SBarry Smith 1635639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1636dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1637639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16380005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16390005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1647ce1779c8SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,const char[],const char[]); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1653d382aafbSBarry Smith 1654e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16557aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1656e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1657e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1658e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1659e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1660e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1661e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1662e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1663e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1664e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 166515681b3cSBarry Smith 1666ec7429eaSBarry Smith #else 16677aab2a10SBarry Smith #define PetscSAWsBlock() 0 1668e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1669e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1670e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1671e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1672e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1673e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1674e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1675e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1676e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 167715681b3cSBarry Smith 1678ec7429eaSBarry Smith #endif 1679b90c6cbeSBarry Smith 16807d5d4d99SBarry Smith typedef void* PetscDLHandle; 1681e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 168282b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 168382b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 168482b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 16857d5d4d99SBarry Smith 1686d382aafbSBarry Smith 16875fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1688a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 16895fe58b6fSBarry Smith #endif 16907eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1691a64a8e02SBarry Smith 1692d382aafbSBarry Smith /*S 1693140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1694d382aafbSBarry Smith 16951d0fab5eSBarry Smith Level: developer 1696d382aafbSBarry Smith 16971d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 16981d0fab5eSBarry Smith 1699140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1700d382aafbSBarry Smith S*/ 1701140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1702d382aafbSBarry Smith 1703140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1704140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1705140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1706140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1707140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1708140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1709d382aafbSBarry Smith 1710d382aafbSBarry Smith /* 1711503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1712d382aafbSBarry Smith link libraries that will be loaded as needed. 1713d382aafbSBarry Smith */ 1714a240a19fSJed Brown 1715a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1716a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1717140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17181c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17191c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1720140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1721140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1722140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1723140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1724d382aafbSBarry Smith 1725d382aafbSBarry Smith /*S 1726d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1727d382aafbSBarry Smith 1728d382aafbSBarry Smith Level: advanced 1729d382aafbSBarry Smith 1730d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1731d382aafbSBarry Smith S*/ 1732d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1733014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1741d382aafbSBarry Smith 1742d382aafbSBarry Smith /* 1743d382aafbSBarry Smith Useful utility routines 1744d382aafbSBarry Smith */ 1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1750014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1751d382aafbSBarry Smith 1752503cfb0cSBarry Smith /* 1753ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1754503cfb0cSBarry Smith 1755503cfb0cSBarry Smith Notes: This is useful in cases like 1756503cfb0cSBarry Smith $ int *a; 1757ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1758ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1759503cfb0cSBarry Smith */ 1760d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1761503cfb0cSBarry Smith 1762cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1763cae2f346SBarry Smith # include <valgrind/valgrind.h> 1764cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1765cae2f346SBarry Smith #else 1766cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1767cae2f346SBarry Smith #endif 1768cae2f346SBarry Smith 1769238ccf28SShri Abhyankar 1770d382aafbSBarry Smith /*MC 1771d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1772d382aafbSBarry Smith 1773d382aafbSBarry Smith Synopsis: 1774aaa7dc30SBarry Smith #include <petscsys.h> 1775d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1776d382aafbSBarry Smith 1777eca87e8dSBarry Smith Not Collective 1778eca87e8dSBarry Smith 1779d382aafbSBarry Smith Input Parameters: 1780d382aafbSBarry Smith . format - the usual printf() format string 1781d382aafbSBarry Smith 1782d382aafbSBarry Smith Level: developer 1783d382aafbSBarry Smith 1784d382aafbSBarry Smith Fortran Note: 1785d382aafbSBarry Smith This routine is not supported in Fortran. 1786d382aafbSBarry Smith 1787d382aafbSBarry Smith Concepts: help messages^printing 1788d382aafbSBarry Smith Concepts: printing^help messages 1789d382aafbSBarry Smith 1790d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1791d382aafbSBarry Smith M*/ 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1793d382aafbSBarry Smith 1794fcfd50ebSBarry Smith /* 1795fcfd50ebSBarry Smith Defines PETSc profiling. 1796fcfd50ebSBarry Smith */ 17972c8e378dSBarry Smith #include <petsclog.h> 1798fcfd50ebSBarry Smith 1799b90c6cbeSBarry Smith 1800fcfd50ebSBarry Smith 1801fcfd50ebSBarry Smith /* 1802fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1803fcfd50ebSBarry Smith */ 1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1805014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1811fcfd50ebSBarry Smith 1812fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1813fcfd50ebSBarry Smith #include <stdarg.h> 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1817fcfd50ebSBarry Smith 1818fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1820fcfd50ebSBarry Smith #endif 1821fcfd50ebSBarry Smith 1822*f1d7fe2eSBarry Smith #define PETSC_HAVE_CLOSURES 1823*f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1824*f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1825*f1d7fe2eSBarry Smith #endif 1826*f1d7fe2eSBarry Smith 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1830d382aafbSBarry Smith 1831d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 183396a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 183474ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1835d382aafbSBarry Smith #endif 1836d382aafbSBarry Smith 1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18390ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1844d382aafbSBarry Smith 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1846d382aafbSBarry Smith 1847d382aafbSBarry Smith /*S 1848d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1849d382aafbSBarry Smith 1850d382aafbSBarry Smith Level: advanced 1851d382aafbSBarry Smith 1852d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1853d382aafbSBarry Smith S*/ 1854014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1855d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1857014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1861d382aafbSBarry Smith 1862d382aafbSBarry Smith /* 1863d382aafbSBarry Smith For use in debuggers 1864d382aafbSBarry Smith */ 1865014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1866014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1870d382aafbSBarry Smith 1871a663daf8SBarry Smith #include <stddef.h> 1872a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1873d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1874d382aafbSBarry Smith #include <stdlib.h> 1875d382aafbSBarry Smith #endif 18766c7e564aSBarry Smith 18774a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1878d382aafbSBarry Smith #include <xmmintrin.h> 1879d382aafbSBarry Smith #endif 1880d382aafbSBarry Smith 1881fcfd50ebSBarry Smith #undef __FUNCT__ 1882fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1883d382aafbSBarry Smith /*@C 1884d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1885d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1886d382aafbSBarry Smith PetscMemmove() in that case. 1887d382aafbSBarry Smith 1888d382aafbSBarry Smith Not Collective 1889d382aafbSBarry Smith 1890d382aafbSBarry Smith Input Parameters: 1891d382aafbSBarry Smith + b - pointer to initial memory space 1892d382aafbSBarry Smith - n - length (in bytes) of space to copy 1893d382aafbSBarry Smith 1894d382aafbSBarry Smith Output Parameter: 1895d382aafbSBarry Smith . a - pointer to copy space 1896d382aafbSBarry Smith 1897d382aafbSBarry Smith Level: intermediate 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith Compile Option: 1900d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1901d382aafbSBarry Smith for memory copies on double precision values. 1902d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1903d382aafbSBarry Smith for memory copies on double precision values. 1904d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1905d382aafbSBarry Smith for memory copies on double precision values. 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith Note: 1908d382aafbSBarry Smith This routine is analogous to memcpy(). 1909d382aafbSBarry Smith 1910503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1911503cfb0cSBarry Smith 1912d382aafbSBarry Smith Concepts: memory^copying 1913d382aafbSBarry Smith Concepts: copying^memory 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith .seealso: PetscMemmove() 1916d382aafbSBarry Smith 1917d382aafbSBarry Smith @*/ 19187087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1919d382aafbSBarry Smith { 1920d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1921d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1922d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1923a7e36092SMatthew G Knepley PetscFunctionBegin; 1924e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1925e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1926a7e36092SMatthew G Knepley #else 1927d382aafbSBarry Smith PetscFunctionBegin; 1928a7e36092SMatthew G Knepley #endif 1929d382aafbSBarry Smith if (a != b) { 1930d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1931e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1932d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1933d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1934d382aafbSBarry Smith #endif 1935d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1936d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1937d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1938d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1939c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1940c5df96a5SBarry Smith PetscErrorCode ierr; 1941c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19428b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1943d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1944d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1945d382aafbSBarry Smith #else 1946d382aafbSBarry Smith size_t i; 1947d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1948d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith } else { 1951d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1952d382aafbSBarry Smith } 1953d382aafbSBarry Smith #else 1954d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1955d382aafbSBarry Smith #endif 1956d382aafbSBarry Smith } 1957d382aafbSBarry Smith PetscFunctionReturn(0); 1958d382aafbSBarry Smith } 1959d382aafbSBarry Smith 1960d382aafbSBarry Smith /*@C 1961d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith Not Collective 1964d382aafbSBarry Smith 1965d382aafbSBarry Smith Input Parameters: 1966d382aafbSBarry Smith + a - pointer to beginning memory location 1967d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1968d382aafbSBarry Smith 1969d382aafbSBarry Smith Level: intermediate 1970d382aafbSBarry Smith 1971d382aafbSBarry Smith Compile Option: 1972d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1973d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1974d382aafbSBarry Smith 1975503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1976503cfb0cSBarry Smith 1977d382aafbSBarry Smith Concepts: memory^zeroing 1978d382aafbSBarry Smith Concepts: zeroing^memory 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith .seealso: PetscMemcpy() 1981d382aafbSBarry Smith @*/ 19827087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1983d382aafbSBarry Smith { 1984d382aafbSBarry Smith if (n > 0) { 1985d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1986e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1987d382aafbSBarry Smith #endif 1988d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1989d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1990d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1991d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1992d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1993d382aafbSBarry Smith } else { 1994d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1995d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1996d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1997d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1998d382aafbSBarry Smith } else { 1999d382aafbSBarry Smith #endif 2000d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2001d382aafbSBarry Smith bzero((char *)a,n); 2002d382aafbSBarry Smith #else 2003d382aafbSBarry Smith memset((char*)a,0,n); 2004d382aafbSBarry Smith #endif 2005d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2006d382aafbSBarry Smith } 2007d382aafbSBarry Smith #endif 2008d382aafbSBarry Smith } 2009d382aafbSBarry Smith return 0; 2010d382aafbSBarry Smith } 2011d382aafbSBarry Smith 2012d382aafbSBarry Smith /*MC 2013d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2014d382aafbSBarry Smith 2015eca87e8dSBarry Smith Synopsis: 2016aaa7dc30SBarry Smith #include <petscsys.h> 2017eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2018eca87e8dSBarry Smith 2019d382aafbSBarry Smith Not Collective 2020d382aafbSBarry Smith 2021d382aafbSBarry Smith Input Parameters: 2022d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2023d382aafbSBarry Smith . n - number of elements to fetch 2024d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 202550d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2026d382aafbSBarry Smith 2027d382aafbSBarry Smith Level: developer 2028d382aafbSBarry Smith 2029d382aafbSBarry Smith Notes: 2030d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2031d382aafbSBarry Smith 203250d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 203350d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 203450d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 203563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 203663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 203763cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2038d382aafbSBarry Smith 2039d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2040d382aafbSBarry Smith address). 2041d382aafbSBarry Smith 2042d382aafbSBarry Smith Concepts: memory 2043d382aafbSBarry Smith M*/ 2044d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2045d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2046d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2047d382aafbSBarry Smith } while (0) 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith /* 2050d382aafbSBarry Smith Determine if some of the kernel computation routines use 2051d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2052d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2053d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2054e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2055d382aafbSBarry Smith */ 2056d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2057d382aafbSBarry Smith 2058d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2059d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2060d382aafbSBarry Smith #endif 2061d382aafbSBarry Smith 20625a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20635a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2064d382aafbSBarry Smith #endif 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2067d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2068d382aafbSBarry Smith #endif 2069d382aafbSBarry Smith 2070d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2071d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2072d382aafbSBarry Smith #endif 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2075d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2076d382aafbSBarry Smith #endif 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2079d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2080d382aafbSBarry Smith #endif 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2083d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2084d382aafbSBarry Smith #endif 2085d382aafbSBarry Smith 2086d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2087d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2088d382aafbSBarry Smith #endif 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2091d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2092d382aafbSBarry Smith #endif 2093d382aafbSBarry Smith 2094d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2095d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2096d382aafbSBarry Smith #endif 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2099d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2100d382aafbSBarry Smith #endif 2101d382aafbSBarry Smith 2102d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2103d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2104d382aafbSBarry Smith #endif 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2107d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2108d382aafbSBarry Smith #endif 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2111d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith #endif 2115d382aafbSBarry Smith 2116d382aafbSBarry Smith /* 2117d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2118d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2119d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2120d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2121d382aafbSBarry Smith ugly extern "C" {} wrappers. 2122d382aafbSBarry Smith */ 2123d382aafbSBarry Smith #if defined(__cplusplus) 2124d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2125d382aafbSBarry Smith #define EXTERN_C_END } 2126d382aafbSBarry Smith #else 2127d382aafbSBarry Smith #define EXTERN_C_BEGIN 2128d382aafbSBarry Smith #define EXTERN_C_END 2129d382aafbSBarry Smith #endif 2130d382aafbSBarry Smith 2131d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2132d382aafbSBarry Smith 2133d382aafbSBarry Smith /*MC 2134d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2135d382aafbSBarry Smith communication 2136d382aafbSBarry Smith 2137d382aafbSBarry Smith Level: beginner 2138d382aafbSBarry Smith 2139d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2140d382aafbSBarry Smith 2141d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2142d382aafbSBarry Smith M*/ 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith /*MC 2145d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2146d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2147d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith Level: beginner 2151d382aafbSBarry Smith 2152d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2153d382aafbSBarry Smith M*/ 2154d382aafbSBarry Smith 2155d382aafbSBarry Smith /*MC 21568619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21578619c96cSJed Brown 21588619c96cSJed Brown Synopsis: 21598619c96cSJed Brown #include <petscsys.h> 21608619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21618619c96cSJed Brown 21628619c96cSJed Brown Level: beginner 21638619c96cSJed Brown 21648619c96cSJed Brown Note: 21658cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21668619c96cSJed Brown 21678619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21688619c96cSJed Brown M*/ 21698619c96cSJed Brown 21708619c96cSJed Brown /*MC 2171d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2172d382aafbSBarry Smith 2173d382aafbSBarry Smith Level: beginner 2174d382aafbSBarry Smith 2175d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2176d382aafbSBarry Smith M*/ 2177d382aafbSBarry Smith 2178d382aafbSBarry Smith /*MC 2179d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2180d382aafbSBarry Smith Level: beginner 2181d382aafbSBarry Smith 2182d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2183d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2186d382aafbSBarry Smith M*/ 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith /*MC 2189d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2190d382aafbSBarry Smith 2191d382aafbSBarry Smith Level: beginner 2192d382aafbSBarry Smith 2193d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2194d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2195d382aafbSBarry Smith 2196d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2197d382aafbSBarry Smith M*/ 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith /*MC 2200d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2201d382aafbSBarry Smith 2202d382aafbSBarry Smith Level: beginner 2203d382aafbSBarry Smith 2204d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2205d382aafbSBarry Smith pass this value 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2208d382aafbSBarry Smith M*/ 2209d382aafbSBarry Smith 2210d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2211d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2212014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2213014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2214d382aafbSBarry Smith #else 2215d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2216d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2217d382aafbSBarry Smith #endif 2218d382aafbSBarry Smith #endif 2219d382aafbSBarry Smith 2220d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2221d382aafbSBarry Smith 2222d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2223d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2224d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2225d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2226d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2227d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2228d382aafbSBarry Smith 2229c5df96a5SBarry Smith #undef __FUNCT__ 2230c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 2231c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2232c5df96a5SBarry Smith { 2233c5df96a5SBarry Smith PetscFunctionBegin; 2234ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2235c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2236c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2237c5df96a5SBarry Smith #endif 2238c5df96a5SBarry Smith PetscFunctionReturn(0); 2239c5df96a5SBarry Smith } 2240c5df96a5SBarry Smith 22414dc2109aSBarry Smith #undef __FUNCT__ 22424dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 22434dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22444dc2109aSBarry Smith { 22454dc2109aSBarry Smith PetscFunctionBegin; 2246ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22474dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22484dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22494dc2109aSBarry Smith #endif 22504dc2109aSBarry Smith PetscFunctionReturn(0); 22514dc2109aSBarry Smith } 22524dc2109aSBarry Smith 2253c5df96a5SBarry Smith 2254d382aafbSBarry Smith /* 22552981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2256d382aafbSBarry Smith */ 2257d382aafbSBarry Smith #if defined(hz) 2258d382aafbSBarry Smith #undef hz 2259d382aafbSBarry Smith #endif 2260d382aafbSBarry Smith 2261d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2262d382aafbSBarry Smith 2263d382aafbSBarry Smith 2264d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2265d382aafbSBarry Smith #include <limits.h> 2266d382aafbSBarry Smith #endif 2267d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2268d382aafbSBarry Smith #include <sys/param.h> 2269d382aafbSBarry Smith #endif 2270d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2271d382aafbSBarry Smith #include <sys/types.h> 2272d382aafbSBarry Smith #endif 2273d382aafbSBarry Smith #if defined(MAXPATHLEN) 2274d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2275d382aafbSBarry Smith #elif defined(MAX_PATH) 2276d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2277d382aafbSBarry Smith #elif defined(_MAX_PATH) 2278d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2279d382aafbSBarry Smith #else 2280d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2281d382aafbSBarry Smith #endif 2282d382aafbSBarry Smith 2283d382aafbSBarry Smith /*MC 2284d382aafbSBarry Smith 2285d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2286d382aafbSBarry Smith 2287d382aafbSBarry Smith $ 1) classic Fortran 77 style 2288d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2289d382aafbSBarry Smith $ XXX variablename 2290d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2291d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2292d382aafbSBarry Smith $ 2293d382aafbSBarry Smith $ 2) classic Fortran 90 style 2294d1716517SSatish Balay $#include "finclude/petscXXX.h" 2295d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2296d382aafbSBarry Smith $ XXX variablename 2297d382aafbSBarry Smith $ 2298d382aafbSBarry Smith $ 3) Using Fortran modules 2299d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2300d382aafbSBarry Smith $ use petscXXXX 2301d382aafbSBarry Smith $ XXX variablename 2302d382aafbSBarry Smith $ 2303d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2304d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2305d382aafbSBarry Smith $ use petscXXXX 2306d382aafbSBarry Smith $ type(XXX) variablename 2307e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2308d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2309d382aafbSBarry Smith 2310d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2311d382aafbSBarry Smith 2312d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2313d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2314d382aafbSBarry Smith $ integer variablename 2315d382aafbSBarry Smith $ 2316d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2317d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2318d382aafbSBarry Smith 2319d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2320d382aafbSBarry Smith for only a few PETSc functions. 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2323d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2324d382aafbSBarry Smith you cannot have something like 2325d382aafbSBarry Smith $ PetscInt row,col 2326d382aafbSBarry Smith $ PetscScalar val 2327d382aafbSBarry Smith $ ... 2328d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2329d382aafbSBarry Smith You must instead have 2330d382aafbSBarry Smith $ PetscInt row(1),col(1) 2331d382aafbSBarry Smith $ PetscScalar val(1) 2332d382aafbSBarry Smith $ ... 2333d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2334d382aafbSBarry Smith 2335d382aafbSBarry Smith 2336d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2337d382aafbSBarry Smith 2338d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2339d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2340d382aafbSBarry Smith 2341d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2342d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2343d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2344d382aafbSBarry Smith 2345d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2346e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2347d382aafbSBarry Smith 2348d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2349d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2350d382aafbSBarry Smith 2351d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2352d382aafbSBarry Smith automatically by "make allfortranstubs". 2353d382aafbSBarry Smith 2354e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2355d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2356d382aafbSBarry Smith include their predecessors 2357d382aafbSBarry Smith 2358d382aafbSBarry Smith Level: beginner 2359d382aafbSBarry Smith 2360d382aafbSBarry Smith M*/ 2361d382aafbSBarry Smith 2362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2366014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 236827710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2369d382aafbSBarry Smith 2370014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2371014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 237260e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 237717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 237817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2383745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2387014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 238821e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2389d382aafbSBarry Smith 2390014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2391014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2392d382aafbSBarry Smith 239376bdecfbSBarry Smith /*J 2394d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2395d382aafbSBarry Smith 2396d382aafbSBarry Smith Level: beginner 2397d382aafbSBarry Smith 2398e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2399d382aafbSBarry Smith with the option --download-sprng 2400d382aafbSBarry Smith 24018f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 240276bdecfbSBarry Smith J*/ 240319fd82e9SBarry Smith typedef const char* PetscRandomType; 2404d382aafbSBarry Smith #define PETSCRAND "rand" 2405d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2406d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2407d382aafbSBarry Smith 2408d382aafbSBarry Smith /* Logging support */ 2409014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2410d382aafbSBarry Smith 2411607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2412d382aafbSBarry Smith 2413d382aafbSBarry Smith /*S 2414d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2415d382aafbSBarry Smith 2416d382aafbSBarry Smith Level: intermediate 2417d382aafbSBarry Smith 2418d382aafbSBarry Smith Concepts: random numbers 2419d382aafbSBarry Smith 2420d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2421d382aafbSBarry Smith S*/ 2422d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2423d382aafbSBarry Smith 2424d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2425140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2426014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2427d382aafbSBarry Smith 2428607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(void); 2429bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 243019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 243219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2433ce1779c8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,const char prefix[],const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,prefix,name);} 2434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2435d382aafbSBarry Smith 2436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2445d382aafbSBarry Smith 2446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2453d382aafbSBarry Smith 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2465e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2467d382aafbSBarry Smith 2468d382aafbSBarry Smith /* 2469d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2470d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2471d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2472d382aafbSBarry Smith PetscBinarySeek(). 2473d382aafbSBarry Smith */ 2474d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2475d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2476d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2477d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2478d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2479d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2480d382aafbSBarry Smith 2481d382aafbSBarry Smith /*E 2482d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2483d382aafbSBarry Smith 2484d382aafbSBarry Smith Level: advanced 2485d382aafbSBarry Smith 2486d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2487d382aafbSBarry Smith E*/ 2488d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2489014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2492d382aafbSBarry Smith 2493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2497014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2499d382aafbSBarry Smith 2500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2502014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2505f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2506d382aafbSBarry Smith 25076145cd65SJed Brown /*E 25086145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 25096145cd65SJed Brown 25106145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 25116145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 25126145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 25136145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 25146145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 25156145cd65SJed Brown 25166145cd65SJed Brown Level: developer 25176145cd65SJed Brown 25186145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 25196145cd65SJed Brown E*/ 25206145cd65SJed Brown typedef enum { 25216145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 25226145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 25236145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 25246145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 25256145cd65SJed Brown } PetscBuildTwoSidedType; 25266145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 25276145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 25286145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 25296145cd65SJed Brown 2530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2531d382aafbSBarry Smith 2532d382aafbSBarry Smith /*E 2533d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2534d382aafbSBarry Smith 2535d382aafbSBarry Smith Level: beginner 2536d382aafbSBarry Smith 2537d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2538d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2539d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2540d382aafbSBarry Smith E*/ 25416fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2542d382aafbSBarry Smith 2543d382aafbSBarry Smith /*MC 2544d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2545d382aafbSBarry Smith 2546d382aafbSBarry Smith Level: beginner 2547d382aafbSBarry Smith 2548d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2549eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2550eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2551d382aafbSBarry Smith 2552d382aafbSBarry Smith M*/ 2553d382aafbSBarry Smith 2554d382aafbSBarry Smith /*MC 2555d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2556d382aafbSBarry Smith value into that location 2557d382aafbSBarry Smith 2558d382aafbSBarry Smith Level: beginner 2559d382aafbSBarry Smith 2560d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2561eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2562eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2563d382aafbSBarry Smith 2564d382aafbSBarry Smith M*/ 2565d382aafbSBarry Smith 2566d382aafbSBarry Smith /*MC 2567d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2568d382aafbSBarry Smith 2569d382aafbSBarry Smith Level: beginner 2570d382aafbSBarry Smith 2571d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2572d382aafbSBarry Smith 2573d382aafbSBarry Smith M*/ 2574d382aafbSBarry Smith 2575ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2576ce94432eSBarry Smith 257745487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 257845487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 257945487dadSJed Brown 2580d382aafbSBarry Smith /*S 2581d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2582d382aafbSBarry Smith 2583d382aafbSBarry Smith Level: advanced 2584d382aafbSBarry Smith 2585d382aafbSBarry Smith Concepts: communicator, create 2586d382aafbSBarry Smith S*/ 2587d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2588d382aafbSBarry Smith 2589d382aafbSBarry Smith struct _n_PetscSubcomm { 2590d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2591d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2592d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 259345487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 259445487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2595708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 259645487dadSJed Brown PetscSubcommType type; 2597d382aafbSBarry Smith }; 2598d382aafbSBarry Smith 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 260365d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2604053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2605f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2606d382aafbSBarry Smith 26070f453b92SJed Brown /*S 26080f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 26090f453b92SJed Brown 26100f453b92SJed Brown Level: developer 26110f453b92SJed Brown 26120f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 26130f453b92SJed Brown S*/ 26140f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 261513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 26160f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 261713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2618137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2619137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2620137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 262113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 262213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 26230f453b92SJed Brown 2624471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2625471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2626471ecdacSJed Brown * possible. */ 2627f4f617ceSJed Brown PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,count,(void**)slot);} 2628d382aafbSBarry Smith 2629268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 26301f817a21SBarry Smith #undef __FUNCT__ 26311f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 26321f817a21SBarry Smith /*@C 26331f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 26341f817a21SBarry Smith 26351f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 26361f817a21SBarry Smith 26371f817a21SBarry Smith Input Parameters: 26381f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 26391f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 26401f817a21SBarry Smith 2641850545d0SSatish Balay Level: intermediate 2642850545d0SSatish Balay 26431f817a21SBarry Smith Options Database: 26441f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 26451f817a21SBarry Smith @*/ 2646dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2647dff31646SBarry Smith { 2648dff31646SBarry Smith size_t len; 2649dff31646SBarry Smith char *vstring; 2650dff31646SBarry Smith PetscErrorCode ierr; 2651dff31646SBarry Smith 26521f817a21SBarry Smith PetscFunctionBegin; 26538d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2654dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2655dff31646SBarry Smith ierr = PetscSegBufferGet(PetscCitationsList,(PetscInt)len,&vstring);CHKERRQ(ierr); 2656dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2657dff31646SBarry Smith if (set) *set = PETSC_TRUE; 26581f817a21SBarry Smith PetscFunctionReturn(0); 2659dff31646SBarry Smith } 2660dff31646SBarry Smith 2661b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2662fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2663fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2664f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2665fe278a28SBarry Smith 2666f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2667f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2668b967cddfSBarry Smith 266904102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2670dff31646SBarry Smith 267168e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 26725dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2673d382aafbSBarry Smith 2674d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2675d382aafbSBarry Smith #undef __FUNCT__ 2676d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2677d382aafbSBarry Smith 2678d382aafbSBarry Smith #endif 2679