xref: /petsc/include/petscsys.h (revision fa9e63e24d90a9e99336ca74ae004b9b5f1da8f6)
1d382aafbSBarry Smith /*
2d382aafbSBarry Smith    This is the main PETSc include file (for C and C++).  It is included by all
3d382aafbSBarry Smith    other PETSc include files, so it almost never has to be specifically included.
4d382aafbSBarry Smith */
56c7e564aSBarry Smith #if !defined(__PETSCSYS_H)
66c7e564aSBarry Smith #define __PETSCSYS_H
7d382aafbSBarry Smith /* ========================================================================== */
8d382aafbSBarry Smith /*
9d382aafbSBarry Smith    petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is
10d382aafbSBarry Smith    found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include
112981ebdbSBarry Smith    in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/
122981ebdbSBarry Smith    does not exist and petscconf.h is in the same directory as the other PETSc include files.
13d382aafbSBarry Smith */
14d382aafbSBarry Smith #include "petscconf.h"
15d382aafbSBarry Smith #include "petscfix.h"
16d382aafbSBarry Smith 
1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS)
1873fca5a0SBarry Smith /*
1973fca5a0SBarry Smith    Feature test macros must be included before headers defined by IEEE Std 1003.1-2001
2073fca5a0SBarry Smith    We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS
2173fca5a0SBarry Smith */
22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE)
2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L
2473fca5a0SBarry Smith #endif
25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE)
2673fca5a0SBarry Smith #define _BSD_SOURCE
2773fca5a0SBarry Smith #endif
28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE)
29ea0fecefSShri Abhyankar #define _GNU_SOURCE
30ea0fecefSShri Abhyankar #endif
3173fca5a0SBarry Smith #endif
3273fca5a0SBarry Smith 
33d382aafbSBarry Smith /* ========================================================================== */
34d382aafbSBarry Smith /*
352981ebdbSBarry Smith    This facilitates using the C version of PETSc from C++ and the
36e2e64c6bSBarry Smith    C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter)
37d382aafbSBarry Smith */
38d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus)
39d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler"
40d382aafbSBarry Smith #endif
411ec50b02SJed Brown 
421ec50b02SJed Brown #if defined(__cplusplus)
431ec50b02SJed Brown #  define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX
441ec50b02SJed Brown #else
451ec50b02SJed Brown #  define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C
461ec50b02SJed Brown #endif
47d382aafbSBarry Smith 
48ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */
49014dd563SJed Brown #  define PETSC_DLLEXPORT __declspec(dllexport)
50014dd563SJed Brown #  define PETSC_DLLIMPORT __declspec(dllimport)
51014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY)
52014dd563SJed Brown #  define PETSC_DLLEXPORT __attribute__((visibility ("default")))
53014dd563SJed Brown #  define PETSC_DLLIMPORT __attribute__((visibility ("default")))
54d382aafbSBarry Smith #else
55014dd563SJed Brown #  define PETSC_DLLEXPORT
56014dd563SJed Brown #  define PETSC_DLLIMPORT
57014dd563SJed Brown #endif
58014dd563SJed Brown 
59014dd563SJed Brown #if defined(petsc_EXPORTS)      /* CMake defines this when building the shared library */
60014dd563SJed Brown #  define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT
61014dd563SJed Brown #else  /* Win32 users need this to import symbols from petsc.dll */
62014dd563SJed Brown #  define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT
63014dd563SJed Brown #endif
64014dd563SJed Brown 
65014dd563SJed Brown #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus)
66014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC
67638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C"
68014dd563SJed Brown #else
69014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC
70638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF
71d382aafbSBarry Smith #endif
72d382aafbSBarry Smith /* ========================================================================== */
73d382aafbSBarry Smith /*
74d382aafbSBarry Smith    Current PETSc version number and release date. Also listed in
75d382aafbSBarry Smith     Web page
76d382aafbSBarry Smith     src/docs/tex/manual/intro.tex,
77d382aafbSBarry Smith     src/docs/tex/manual/manual.tex.
78d382aafbSBarry Smith     src/docs/website/index.html.
79d382aafbSBarry Smith */
80d382aafbSBarry Smith #include "petscversion.h"
81301d30feSBarry Smith #define PETSC_AUTHOR_INFO        "       The PETSc Team\n    petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n"
82d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1)
83301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \
84d382aafbSBarry Smith                                          PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \
85301d30feSBarry Smith 					 PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE)
86d382aafbSBarry Smith #else
87301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s  HG Date: %s", \
88301d30feSBarry Smith                                         PETSC_VERSION_HG, PETSC_VERSION_DATE_HG)
89d382aafbSBarry Smith #endif
90d382aafbSBarry Smith 
91d382aafbSBarry Smith /*MC
92d382aafbSBarry Smith     PetscGetVersion - Gets the PETSc version information in a string.
93d382aafbSBarry Smith 
94d382aafbSBarry Smith     Input Parameter:
95d382aafbSBarry Smith .   len - length of the string
96d382aafbSBarry Smith 
97d382aafbSBarry Smith     Output Parameter:
98d382aafbSBarry Smith .   version - version string
99d382aafbSBarry Smith 
100d382aafbSBarry Smith     Level: developer
101d382aafbSBarry Smith 
102d382aafbSBarry Smith     Usage:
103d382aafbSBarry Smith     char version[256];
104d382aafbSBarry Smith     ierr = PetscGetVersion(version,256);CHKERRQ(ierr)
105d382aafbSBarry Smith 
106d382aafbSBarry Smith     Fortran Note:
107d382aafbSBarry Smith     This routine is not supported in Fortran.
108d382aafbSBarry Smith 
109d382aafbSBarry Smith .seealso: PetscGetProgramName()
110d382aafbSBarry Smith 
111d382aafbSBarry Smith M*/
112d382aafbSBarry Smith 
113d382aafbSBarry Smith /* ========================================================================== */
114d382aafbSBarry Smith 
115d382aafbSBarry Smith /*
116d382aafbSBarry Smith     Defines the interface to MPI allowing the use of all MPI functions.
117d382aafbSBarry Smith 
118d382aafbSBarry Smith     PETSc does not use the C++ binding of MPI at ALL. The following flag
119d382aafbSBarry Smith     makes sure the C++ bindings are not included. The C++ bindings REQUIRE
120d382aafbSBarry Smith     putting mpi.h before ANY C++ include files, we cannot control this
121d382aafbSBarry Smith     with all PETSc users. Users who want to use the MPI C++ bindings can include
122d382aafbSBarry Smith     mpicxx.h directly in their code
123d382aafbSBarry Smith */
124*fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX)
125d382aafbSBarry Smith #  define MPICH_SKIP_MPICXX 1
126*fa9e63e2SJed Brown #endif
127*fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX)
128d382aafbSBarry Smith #  define OMPI_SKIP_MPICXX 1
129*fa9e63e2SJed Brown #endif
130d382aafbSBarry Smith #include "mpi.h"
13165013866SBarry Smith 
132d382aafbSBarry Smith /*
1332981ebdbSBarry Smith     Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler
134d382aafbSBarry Smith     see the top of mpicxx.h in the MPICH2 distribution.
135d382aafbSBarry Smith */
136d382aafbSBarry Smith #include <stdio.h>
137d382aafbSBarry Smith 
138d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */
139d382aafbSBarry Smith #if !defined(MPIAPI)
140d382aafbSBarry Smith #define MPIAPI
141d382aafbSBarry Smith #endif
142d382aafbSBarry Smith 
143b3506946SBarry Smith 
144d382aafbSBarry Smith /*MC
145d382aafbSBarry Smith     PetscErrorCode - datatype used for return error code from all PETSc functions
146d382aafbSBarry Smith 
147d382aafbSBarry Smith     Level: beginner
148d382aafbSBarry Smith 
149d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ
150d382aafbSBarry Smith M*/
151d382aafbSBarry Smith typedef int PetscErrorCode;
152d382aafbSBarry Smith 
153d382aafbSBarry Smith /*MC
154d382aafbSBarry Smith 
155503cfb0cSBarry Smith     PetscClassId - A unique id used to identify each PETSc class.
156d382aafbSBarry Smith          (internal integer in the data structure used for error
1572981ebdbSBarry Smith          checking). These are all computed by an offset from the lowest
1580700a824SBarry Smith          one, PETSC_SMALLEST_CLASSID.
159d382aafbSBarry Smith 
160d382aafbSBarry Smith     Level: advanced
161d382aafbSBarry Smith 
1620700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate()
163d382aafbSBarry Smith M*/
1640700a824SBarry Smith typedef int PetscClassId;
165d382aafbSBarry Smith 
166d382aafbSBarry Smith 
167d382aafbSBarry Smith /*MC
168d382aafbSBarry Smith     PetscMPIInt - datatype used to represent 'int' parameters to MPI functions.
169d382aafbSBarry Smith 
170d382aafbSBarry Smith     Level: intermediate
171d382aafbSBarry Smith 
172d382aafbSBarry Smith     Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but
1733b2a8c54SBarry Smith            standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit
174d382aafbSBarry Smith 
1753b2a8c54SBarry Smith     PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a
1762981ebdbSBarry Smith       PETSC_ERR_ARG_OUTOFRANGE error.
177d382aafbSBarry Smith 
1783b2a8c54SBarry Smith     PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it
1792981ebdbSBarry Smith       generates a PETSC_ERR_ARG_OUTOFRANGE error.
180d382aafbSBarry Smith 
181d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt
182d382aafbSBarry Smith 
183d382aafbSBarry Smith M*/
184d382aafbSBarry Smith typedef int PetscMPIInt;
185d382aafbSBarry Smith 
186d382aafbSBarry Smith /*MC
187d382aafbSBarry Smith     PetscEnum - datatype used to pass enum types within PETSc functions.
188d382aafbSBarry Smith 
189d382aafbSBarry Smith     Level: intermediate
190d382aafbSBarry Smith 
191d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum()
192d382aafbSBarry Smith M*/
193d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum;
194d382aafbSBarry Smith 
195d382aafbSBarry Smith /*MC
196d382aafbSBarry Smith     PetscInt - PETSc type that represents integer - used primarily to
1973b2a8c54SBarry Smith       represent size of arrays and indexing into arrays. Its size can be configured with the option
198d382aafbSBarry Smith       --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints]
199d382aafbSBarry Smith 
200d382aafbSBarry Smith    Level: intermediate
201d382aafbSBarry Smith 
202d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt
203d382aafbSBarry Smith M*/
204f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8)
205f505b413SSatish Balay typedef long long Petsc64bitInt;
206f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64)
207236ed0a3SSatish Balay typedef __int64 Petsc64bitInt;
208236ed0a3SSatish Balay #else
209f505b413SSatish Balay typedef unknown64bit Petsc64bitInt
210236ed0a3SSatish Balay #endif
211d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES)
212236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt;
213d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT
214d382aafbSBarry Smith #else
215d382aafbSBarry Smith typedef int PetscInt;
216d382aafbSBarry Smith #define MPIU_INT MPI_INT
217d382aafbSBarry Smith #endif
218236ed0a3SSatish Balay 
219d382aafbSBarry Smith 
220702bc34aSSatish Balay /*MC
221702bc34aSSatish Balay     PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions.
222702bc34aSSatish Balay 
223702bc34aSSatish Balay     Level: intermediate
224702bc34aSSatish Balay 
225702bc34aSSatish Balay     Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but
226702bc34aSSatish Balay            standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit
227702bc34aSSatish Balay            (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below).
228702bc34aSSatish Balay 
229702bc34aSSatish Balay     PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a
2302981ebdbSBarry Smith       PETSC_ERR_ARG_OUTOFRANGE error.
231702bc34aSSatish Balay 
232702bc34aSSatish Balay     PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it
2332981ebdbSBarry Smith       generates a PETSC_ERR_ARG_OUTOFRANGE error
234702bc34aSSatish Balay 
2352981ebdbSBarry Smith     Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc,
236702bc34aSSatish Balay      if you run ./configure with the option
237702bc34aSSatish Balay      --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib]
2382981ebdbSBarry Smith      but you need to also use --known-64-bit-blas-indices.
2392981ebdbSBarry Smith 
2402981ebdbSBarry Smith         MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices
2412981ebdbSBarry Smith 
2422981ebdbSBarry Smith      Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK.
243702bc34aSSatish Balay 
244702bc34aSSatish Balay      External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot
245702bc34aSSatish Balay      be used with PETSc if you have set PetscBLASInt to long int.
246702bc34aSSatish Balay 
247702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt
248702bc34aSSatish Balay 
249702bc34aSSatish Balay M*/
250702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES)
251702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt;
252702bc34aSSatish Balay #else
253702bc34aSSatish Balay typedef int PetscBLASInt;
254702bc34aSSatish Balay #endif
255702bc34aSSatish Balay 
25658b60935SBarry Smith /*EC
25758b60935SBarry Smith 
2582981ebdbSBarry Smith     PetscPrecision - indicates what precision the object is using. This is currently not used.
25958b60935SBarry Smith 
26058b60935SBarry Smith     Level: advanced
26158b60935SBarry Smith 
26258b60935SBarry Smith .seealso: PetscObjectSetPrecision()
26358b60935SBarry Smith E*/
26458b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision;
265014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[];
26658b60935SBarry Smith 
267503cfb0cSBarry Smith /*
268503cfb0cSBarry Smith     For the rare cases when one needs to send a size_t object with MPI
269503cfb0cSBarry Smith */
270d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT)
271d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT
272d382aafbSBarry Smith #elif  (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG)
273d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG
274d382aafbSBarry Smith #elif  (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG)
275d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT
276d382aafbSBarry Smith #else
277d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov"
278d382aafbSBarry Smith #endif
279d382aafbSBarry Smith 
280d382aafbSBarry Smith 
281d382aafbSBarry Smith /*
282d382aafbSBarry Smith       You can use PETSC_STDOUT as a replacement of stdout. You can also change
283d382aafbSBarry Smith     the value of PETSC_STDOUT to redirect all standard output elsewhere
284d382aafbSBarry Smith */
285014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT;
286d382aafbSBarry Smith 
287d382aafbSBarry Smith /*
288d382aafbSBarry Smith       You can use PETSC_STDERR as a replacement of stderr. You can also change
289d382aafbSBarry Smith     the value of PETSC_STDERR to redirect all standard error elsewhere
290d382aafbSBarry Smith */
291014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR;
292d382aafbSBarry Smith 
293d382aafbSBarry Smith /*MC
294d382aafbSBarry Smith     PetscUnlikely - hints the compiler that the given condition is usually FALSE
295d382aafbSBarry Smith 
296d382aafbSBarry Smith     Synopsis:
297ace3abfcSBarry Smith     PetscBool  PetscUnlikely(PetscBool  cond)
298d382aafbSBarry Smith 
299eca87e8dSBarry Smith     Not Collective
300eca87e8dSBarry Smith 
301d382aafbSBarry Smith     Input Parameters:
302d382aafbSBarry Smith .   cond - condition or expression
303d382aafbSBarry Smith 
304d382aafbSBarry Smith     Note: This returns the same truth value, it is only a hint to compilers that the resulting
305d382aafbSBarry Smith     branch is unlikely.
306d382aafbSBarry Smith 
307d382aafbSBarry Smith     Level: advanced
308d382aafbSBarry Smith 
309d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ
310d382aafbSBarry Smith M*/
311d382aafbSBarry Smith 
312d382aafbSBarry Smith /*MC
313d382aafbSBarry Smith     PetscLikely - hints the compiler that the given condition is usually TRUE
314d382aafbSBarry Smith 
315d382aafbSBarry Smith     Synopsis:
316ace3abfcSBarry Smith     PetscBool  PetscUnlikely(PetscBool  cond)
317d382aafbSBarry Smith 
318eca87e8dSBarry Smith     Not Collective
319eca87e8dSBarry Smith 
320d382aafbSBarry Smith     Input Parameters:
321d382aafbSBarry Smith .   cond - condition or expression
322d382aafbSBarry Smith 
323d382aafbSBarry Smith     Note: This returns the same truth value, it is only a hint to compilers that the resulting
324d382aafbSBarry Smith     branch is likely.
325d382aafbSBarry Smith 
326d382aafbSBarry Smith     Level: advanced
327d382aafbSBarry Smith 
328d382aafbSBarry Smith .seealso: PetscUnlikely()
329d382aafbSBarry Smith M*/
330d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT)
331d382aafbSBarry Smith #  define PetscUnlikely(cond)   __builtin_expect(!!(cond),0)
332d382aafbSBarry Smith #  define PetscLikely(cond)     __builtin_expect(!!(cond),1)
333d382aafbSBarry Smith #else
334cd3f4ce9SJed Brown #  define PetscUnlikely(cond)   (cond)
335cd3f4ce9SJed Brown #  define PetscLikely(cond)     (cond)
336d382aafbSBarry Smith #endif
337d382aafbSBarry Smith 
338d382aafbSBarry Smith /*
339d382aafbSBarry Smith     Defines some elementary mathematics functions and constants.
340d382aafbSBarry Smith */
341d382aafbSBarry Smith #include "petscmath.h"
342d382aafbSBarry Smith 
343d382aafbSBarry Smith /*
344d382aafbSBarry Smith     Declare extern C stuff after including external header files
345d382aafbSBarry Smith */
346d382aafbSBarry Smith 
347d382aafbSBarry Smith 
348d382aafbSBarry Smith /*
349d382aafbSBarry Smith        Basic PETSc constants
350d382aafbSBarry Smith */
351d382aafbSBarry Smith 
352d382aafbSBarry Smith /*E
353ace3abfcSBarry Smith     PetscBool  - Logical variable. Actually an int in C and a logical in Fortran.
354d382aafbSBarry Smith 
355d382aafbSBarry Smith    Level: beginner
356d382aafbSBarry Smith 
357ace3abfcSBarry Smith    Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for
35834e82e7dSBarry Smith       boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms.
35934e82e7dSBarry Smith 
360d382aafbSBarry Smith E*/
361ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool;
362014dd563SJed Brown PETSC_EXTERN const char *PetscBools[];
36370b3c8c7SBarry Smith 
36470b3c8c7SBarry Smith /*E
36570b3c8c7SBarry Smith     PetscCopyMode  - Determines how an array passed to certain functions is copied or retained
36670b3c8c7SBarry Smith 
36770b3c8c7SBarry Smith    Level: beginner
36870b3c8c7SBarry Smith 
36970b3c8c7SBarry Smith $   PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array
37070b3c8c7SBarry Smith $   PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or
37170b3c8c7SBarry Smith $                       delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran.
37270b3c8c7SBarry Smith $   PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use
37370b3c8c7SBarry Smith                         the array but the user must delete the array after the object is destroyed.
37470b3c8c7SBarry Smith 
37570b3c8c7SBarry Smith E*/
37670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode;
377014dd563SJed Brown PETSC_EXTERN const char *PetscCopyModes[];
378d382aafbSBarry Smith 
379d382aafbSBarry Smith /*MC
380ace3abfcSBarry Smith     PETSC_FALSE - False value of PetscBool
381d382aafbSBarry Smith 
382d382aafbSBarry Smith     Level: beginner
383d382aafbSBarry Smith 
384d382aafbSBarry Smith     Note: Zero integer
385d382aafbSBarry Smith 
386ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE
387d382aafbSBarry Smith M*/
388d382aafbSBarry Smith 
389d382aafbSBarry Smith /*MC
390ace3abfcSBarry Smith     PETSC_TRUE - True value of PetscBool
391d382aafbSBarry Smith 
392d382aafbSBarry Smith     Level: beginner
393d382aafbSBarry Smith 
394d382aafbSBarry Smith     Note: Nonzero integer
395d382aafbSBarry Smith 
396ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE
397d382aafbSBarry Smith M*/
398d382aafbSBarry Smith 
399d382aafbSBarry Smith /*MC
400d382aafbSBarry Smith     PETSC_NULL - standard way of passing in a null or array or pointer
401d382aafbSBarry Smith 
402d382aafbSBarry Smith    Level: beginner
403d382aafbSBarry Smith 
404d382aafbSBarry Smith    Notes: accepted by many PETSc functions to not set a parameter and instead use
405d382aafbSBarry Smith           some default
406d382aafbSBarry Smith 
407d382aafbSBarry Smith           This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER,
408503cfb0cSBarry Smith           PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc
409d382aafbSBarry Smith 
41034e82e7dSBarry Smith   Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under
41134e82e7dSBarry Smith       different versions of Unix. It is tricky to insure the correct include file is always included.
41234e82e7dSBarry Smith 
413d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE
414d382aafbSBarry Smith 
415d382aafbSBarry Smith M*/
416d382aafbSBarry Smith #define PETSC_NULL           0
417d382aafbSBarry Smith 
418d382aafbSBarry Smith /*MC
419d382aafbSBarry Smith     PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument
420d382aafbSBarry Smith 
421d382aafbSBarry Smith    Level: beginner
422d382aafbSBarry Smith 
423d382aafbSBarry Smith    Note: accepted by many PETSc functions to not set a parameter and instead use
424d382aafbSBarry Smith           some default
425d382aafbSBarry Smith 
426d382aafbSBarry Smith    Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER,
427d382aafbSBarry Smith           PETSC_NULL_DOUBLE_PRECISION etc
428d382aafbSBarry Smith 
429d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE
430d382aafbSBarry Smith 
431d382aafbSBarry Smith M*/
432d382aafbSBarry Smith #define PETSC_IGNORE         PETSC_NULL
433d382aafbSBarry Smith 
434d382aafbSBarry Smith /*MC
435557d4da8SBarry Smith     PETSC_DECIDE - standard way of passing in integer or floating point parameter
436557d4da8SBarry Smith        where you wish PETSc to use the default.
437557d4da8SBarry Smith 
438557d4da8SBarry Smith    Level: beginner
439557d4da8SBarry Smith 
440557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE
441557d4da8SBarry Smith 
442557d4da8SBarry Smith M*/
443557d4da8SBarry Smith #define PETSC_DECIDE  -1
444557d4da8SBarry Smith 
445557d4da8SBarry Smith /*MC
446d382aafbSBarry Smith     PETSC_DETERMINE - standard way of passing in integer or floating point parameter
447d382aafbSBarry Smith        where you wish PETSc to compute the required value.
448d382aafbSBarry Smith 
449d382aafbSBarry Smith    Level: beginner
450d382aafbSBarry Smith 
451557d4da8SBarry Smith 
452557d4da8SBarry Smith    Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for
453557d4da8SBarry Smith      some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value.
454557d4da8SBarry Smith 
455d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes()
456d382aafbSBarry Smith 
457d382aafbSBarry Smith M*/
458d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE
459d382aafbSBarry Smith 
460d382aafbSBarry Smith /*MC
461557d4da8SBarry Smith     PETSC_DEFAULT - standard way of passing in integer or floating point parameter
462557d4da8SBarry Smith        where you wish PETSc to use the default.
463557d4da8SBarry Smith 
464557d4da8SBarry Smith    Level: beginner
465557d4da8SBarry Smith 
466557d4da8SBarry Smith    Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION.
467557d4da8SBarry Smith 
468557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE
469557d4da8SBarry Smith 
470557d4da8SBarry Smith M*/
471557d4da8SBarry Smith #define PETSC_DEFAULT  -2
472557d4da8SBarry Smith 
473557d4da8SBarry Smith /*MC
474d382aafbSBarry Smith     PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents
475d382aafbSBarry Smith            all the processs that PETSc knows about.
476d382aafbSBarry Smith 
477d382aafbSBarry Smith    Level: beginner
478d382aafbSBarry Smith 
479d382aafbSBarry Smith    Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to
480d382aafbSBarry Smith           run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller)
481d382aafbSBarry Smith           communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling
482d382aafbSBarry Smith           PetscInitialize()
483d382aafbSBarry Smith 
484d382aafbSBarry Smith .seealso: PETSC_COMM_SELF
485d382aafbSBarry Smith 
486d382aafbSBarry Smith M*/
487014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD;
488d382aafbSBarry Smith 
489d382aafbSBarry Smith /*MC
490503cfb0cSBarry Smith     PETSC_COMM_SELF - This is always MPI_COMM_SELF
491d382aafbSBarry Smith 
492d382aafbSBarry Smith    Level: beginner
493d382aafbSBarry Smith 
494d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD
495d382aafbSBarry Smith 
496d382aafbSBarry Smith M*/
497d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF
498d382aafbSBarry Smith 
499014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled;
500014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled;
501014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize;
502d382aafbSBarry Smith 
503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm));
504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*);
505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*);
506d382aafbSBarry Smith 
507d382aafbSBarry Smith /*MC
508d382aafbSBarry Smith    PetscMalloc - Allocates memory
509d382aafbSBarry Smith 
510eca87e8dSBarry Smith    Synopsis:
511eca87e8dSBarry Smith    PetscErrorCode PetscMalloc(size_t m,void **result)
512eca87e8dSBarry Smith 
513eca87e8dSBarry Smith    Not Collective
514eca87e8dSBarry Smith 
515d382aafbSBarry Smith    Input Parameter:
516d382aafbSBarry Smith .  m - number of bytes to allocate
517d382aafbSBarry Smith 
518d382aafbSBarry Smith    Output Parameter:
519d382aafbSBarry Smith .  result - memory allocated
520d382aafbSBarry Smith 
521d382aafbSBarry Smith    Level: beginner
522d382aafbSBarry Smith 
523d382aafbSBarry Smith    Notes: Memory is always allocated at least double aligned
524d382aafbSBarry Smith 
525d382aafbSBarry Smith           If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will
526d382aafbSBarry Smith           properly handle not freeing the null pointer.
527d382aafbSBarry Smith 
528d382aafbSBarry Smith .seealso: PetscFree(), PetscNew()
529d382aafbSBarry Smith 
530d382aafbSBarry Smith   Concepts: memory allocation
531d382aafbSBarry Smith 
532d382aafbSBarry Smith M*/
5332714b66aSJed Brown #define PetscMalloc(a,b)  ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) )
534d382aafbSBarry Smith 
535d382aafbSBarry Smith /*MC
536503cfb0cSBarry Smith    PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment
537d382aafbSBarry Smith 
538d382aafbSBarry Smith    Synopsis:
539d382aafbSBarry Smith    void *PetscAddrAlign(void *addr)
540d382aafbSBarry Smith 
541eca87e8dSBarry Smith    Not Collective
542eca87e8dSBarry Smith 
543eca87e8dSBarry Smith    Input Parameters:
544eca87e8dSBarry Smith .  addr - address to align (any pointer type)
545eca87e8dSBarry Smith 
546d382aafbSBarry Smith    Level: developer
547d382aafbSBarry Smith 
548d382aafbSBarry Smith .seealso: PetscMallocAlign()
549d382aafbSBarry Smith 
550d382aafbSBarry Smith   Concepts: memory allocation
551d382aafbSBarry Smith M*/
552d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1))
553d382aafbSBarry Smith 
554d382aafbSBarry Smith /*MC
555503cfb0cSBarry Smith    PetscMalloc2 - Allocates 2 chunks of  memory both aligned to PETSC_MEMALIGN
556d382aafbSBarry Smith 
557eca87e8dSBarry Smith    Synopsis:
558eca87e8dSBarry Smith    PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2)
559eca87e8dSBarry Smith 
560eca87e8dSBarry Smith    Not Collective
561eca87e8dSBarry Smith 
562d382aafbSBarry Smith    Input Parameter:
563d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
564d382aafbSBarry Smith .  t1 - type of first memory elements
565d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
566d382aafbSBarry Smith -  t2 - type of second memory elements
567d382aafbSBarry Smith 
568d382aafbSBarry Smith    Output Parameter:
569d382aafbSBarry Smith +  r1 - memory allocated in first chunk
570d382aafbSBarry Smith -  r2 - memory allocated in second chunk
571d382aafbSBarry Smith 
572d382aafbSBarry Smith    Level: developer
573d382aafbSBarry Smith 
574d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc()
575d382aafbSBarry Smith 
576d382aafbSBarry Smith   Concepts: memory allocation
577d382aafbSBarry Smith 
578d382aafbSBarry Smith M*/
579d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
580d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2))
581d382aafbSBarry Smith #else
5822981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0))
583d382aafbSBarry Smith #endif
584d382aafbSBarry Smith 
585d382aafbSBarry Smith /*MC
586503cfb0cSBarry Smith    PetscMalloc3 - Allocates 3 chunks of  memory  all aligned to PETSC_MEMALIGN
587d382aafbSBarry Smith 
588eca87e8dSBarry Smith    Synopsis:
589eca87e8dSBarry Smith    PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3)
590eca87e8dSBarry Smith 
591eca87e8dSBarry Smith    Not Collective
592eca87e8dSBarry Smith 
593d382aafbSBarry Smith    Input Parameter:
594d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
595d382aafbSBarry Smith .  t1 - type of first memory elements
596d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
597d382aafbSBarry Smith .  t2 - type of second memory elements
598d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
599d382aafbSBarry Smith -  t3 - type of third memory elements
600d382aafbSBarry Smith 
601d382aafbSBarry Smith    Output Parameter:
602d382aafbSBarry Smith +  r1 - memory allocated in first chunk
603d382aafbSBarry Smith .  r2 - memory allocated in second chunk
604d382aafbSBarry Smith -  r3 - memory allocated in third chunk
605d382aafbSBarry Smith 
606d382aafbSBarry Smith    Level: developer
607d382aafbSBarry Smith 
608d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3()
609d382aafbSBarry Smith 
610d382aafbSBarry Smith   Concepts: memory allocation
611d382aafbSBarry Smith 
612d382aafbSBarry Smith M*/
613d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
614d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3))
615d382aafbSBarry Smith #else
6163b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \
617d382aafbSBarry Smith                                                   || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0))
618d382aafbSBarry Smith #endif
619d382aafbSBarry Smith 
620d382aafbSBarry Smith /*MC
621503cfb0cSBarry Smith    PetscMalloc4 - Allocates 4 chunks of  memory  all aligned to PETSC_MEMALIGN
622d382aafbSBarry Smith 
623eca87e8dSBarry Smith    Synopsis:
624eca87e8dSBarry Smith    PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4)
625eca87e8dSBarry Smith 
626eca87e8dSBarry Smith    Not Collective
627eca87e8dSBarry Smith 
628d382aafbSBarry Smith    Input Parameter:
629d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
630d382aafbSBarry Smith .  t1 - type of first memory elements
631d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
632d382aafbSBarry Smith .  t2 - type of second memory elements
633d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
634d382aafbSBarry Smith .  t3 - type of third memory elements
635d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
636d382aafbSBarry Smith -  t4 - type of fourth memory elements
637d382aafbSBarry Smith 
638d382aafbSBarry Smith    Output Parameter:
639d382aafbSBarry Smith +  r1 - memory allocated in first chunk
640d382aafbSBarry Smith .  r2 - memory allocated in second chunk
641d382aafbSBarry Smith .  r3 - memory allocated in third chunk
642d382aafbSBarry Smith -  r4 - memory allocated in fourth chunk
643d382aafbSBarry Smith 
644d382aafbSBarry Smith    Level: developer
645d382aafbSBarry Smith 
646d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4()
647d382aafbSBarry Smith 
648d382aafbSBarry Smith   Concepts: memory allocation
649d382aafbSBarry Smith 
650d382aafbSBarry Smith M*/
651d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
652d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4))
653d382aafbSBarry Smith #else
654d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4)               \
6553b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \
656d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0))
657d382aafbSBarry Smith #endif
658d382aafbSBarry Smith 
659d382aafbSBarry Smith /*MC
660503cfb0cSBarry Smith    PetscMalloc5 - Allocates 5 chunks of  memory all aligned to PETSC_MEMALIGN
661d382aafbSBarry Smith 
662eca87e8dSBarry Smith    Synopsis:
663eca87e8dSBarry Smith    PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5)
664eca87e8dSBarry Smith 
665eca87e8dSBarry Smith    Not Collective
666eca87e8dSBarry Smith 
667d382aafbSBarry Smith    Input Parameter:
668d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
669d382aafbSBarry Smith .  t1 - type of first memory elements
670d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
671d382aafbSBarry Smith .  t2 - type of second memory elements
672d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
673d382aafbSBarry Smith .  t3 - type of third memory elements
674d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
675d382aafbSBarry Smith .  t4 - type of fourth memory elements
676d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
677d382aafbSBarry Smith -  t5 - type of fifth memory elements
678d382aafbSBarry Smith 
679d382aafbSBarry Smith    Output Parameter:
680d382aafbSBarry Smith +  r1 - memory allocated in first chunk
681d382aafbSBarry Smith .  r2 - memory allocated in second chunk
682d382aafbSBarry Smith .  r3 - memory allocated in third chunk
683d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
684d382aafbSBarry Smith -  r5 - memory allocated in fifth chunk
685d382aafbSBarry Smith 
686d382aafbSBarry Smith    Level: developer
687d382aafbSBarry Smith 
688d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5()
689d382aafbSBarry Smith 
690d382aafbSBarry Smith   Concepts: memory allocation
691d382aafbSBarry Smith 
692d382aafbSBarry Smith M*/
693d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
694d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5))
695d382aafbSBarry Smith #else
696d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5)      \
6973b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \
698d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0))
699d382aafbSBarry Smith #endif
700d382aafbSBarry Smith 
701d382aafbSBarry Smith 
702d382aafbSBarry Smith /*MC
703503cfb0cSBarry Smith    PetscMalloc6 - Allocates 6 chunks of  memory all aligned to PETSC_MEMALIGN
704d382aafbSBarry Smith 
705eca87e8dSBarry Smith    Synopsis:
706eca87e8dSBarry Smith    PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6)
707eca87e8dSBarry Smith 
708eca87e8dSBarry Smith    Not Collective
709eca87e8dSBarry Smith 
710d382aafbSBarry Smith    Input Parameter:
711d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
712d382aafbSBarry Smith .  t1 - type of first memory elements
713d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
714d382aafbSBarry Smith .  t2 - type of second memory elements
715d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
716d382aafbSBarry Smith .  t3 - type of third memory elements
717d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
718d382aafbSBarry Smith .  t4 - type of fourth memory elements
719d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
720d382aafbSBarry Smith .  t5 - type of fifth memory elements
721d382aafbSBarry Smith .  m6 - number of elements to allocate in 6th chunk  (may be zero)
722d382aafbSBarry Smith -  t6 - type of sixth memory elements
723d382aafbSBarry Smith 
724d382aafbSBarry Smith    Output Parameter:
725d382aafbSBarry Smith +  r1 - memory allocated in first chunk
726d382aafbSBarry Smith .  r2 - memory allocated in second chunk
727d382aafbSBarry Smith .  r3 - memory allocated in third chunk
728d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
729d382aafbSBarry Smith .  r5 - memory allocated in fifth chunk
730d382aafbSBarry Smith -  r6 - memory allocated in sixth chunk
731d382aafbSBarry Smith 
732d382aafbSBarry Smith    Level: developer
733d382aafbSBarry Smith 
734d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6()
735d382aafbSBarry Smith 
736d382aafbSBarry Smith   Concepts: memory allocation
737d382aafbSBarry Smith 
738d382aafbSBarry Smith M*/
739d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
740d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6))
741d382aafbSBarry Smith #else
742d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \
7433b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \
744d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0))
745d382aafbSBarry Smith #endif
746d382aafbSBarry Smith 
747d382aafbSBarry Smith /*MC
748503cfb0cSBarry Smith    PetscMalloc7 - Allocates 7 chunks of  memory all aligned to PETSC_MEMALIGN
749d382aafbSBarry Smith 
750eca87e8dSBarry Smith    Synopsis:
751eca87e8dSBarry Smith    PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7)
752eca87e8dSBarry Smith 
753eca87e8dSBarry Smith    Not Collective
754eca87e8dSBarry Smith 
755d382aafbSBarry Smith    Input Parameter:
756d382aafbSBarry Smith +  m1 - number of elements to allocate in 1st chunk  (may be zero)
757d382aafbSBarry Smith .  t1 - type of first memory elements
758d382aafbSBarry Smith .  m2 - number of elements to allocate in 2nd chunk  (may be zero)
759d382aafbSBarry Smith .  t2 - type of second memory elements
760d382aafbSBarry Smith .  m3 - number of elements to allocate in 3rd chunk  (may be zero)
761d382aafbSBarry Smith .  t3 - type of third memory elements
762d382aafbSBarry Smith .  m4 - number of elements to allocate in 4th chunk  (may be zero)
763d382aafbSBarry Smith .  t4 - type of fourth memory elements
764d382aafbSBarry Smith .  m5 - number of elements to allocate in 5th chunk  (may be zero)
765d382aafbSBarry Smith .  t5 - type of fifth memory elements
766d382aafbSBarry Smith .  m6 - number of elements to allocate in 6th chunk  (may be zero)
767d382aafbSBarry Smith .  t6 - type of sixth memory elements
768d382aafbSBarry Smith .  m7 - number of elements to allocate in 7th chunk  (may be zero)
769d382aafbSBarry Smith -  t7 - type of sixth memory elements
770d382aafbSBarry Smith 
771d382aafbSBarry Smith    Output Parameter:
772d382aafbSBarry Smith +  r1 - memory allocated in first chunk
773d382aafbSBarry Smith .  r2 - memory allocated in second chunk
774d382aafbSBarry Smith .  r3 - memory allocated in third chunk
775d382aafbSBarry Smith .  r4 - memory allocated in fourth chunk
776d382aafbSBarry Smith .  r5 - memory allocated in fifth chunk
777d382aafbSBarry Smith .  r6 - memory allocated in sixth chunk
778eca87e8dSBarry Smith -  r7 - memory allocated in seventh chunk
779d382aafbSBarry Smith 
780d382aafbSBarry Smith    Level: developer
781d382aafbSBarry Smith 
782d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7()
783d382aafbSBarry Smith 
784d382aafbSBarry Smith   Concepts: memory allocation
785d382aafbSBarry Smith 
786d382aafbSBarry Smith M*/
787d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
788d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7))
789d382aafbSBarry Smith #else
790d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \
7913b98c0a2SBarry Smith   ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \
792d382aafbSBarry Smith    || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0))
793d382aafbSBarry Smith #endif
794d382aafbSBarry Smith 
795d382aafbSBarry Smith /*MC
796503cfb0cSBarry Smith    PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN
797d382aafbSBarry Smith 
798eca87e8dSBarry Smith    Synopsis:
799eca87e8dSBarry Smith    PetscErrorCode PetscNew(struct type,((type *))result)
800eca87e8dSBarry Smith 
801eca87e8dSBarry Smith    Not Collective
802eca87e8dSBarry Smith 
803d382aafbSBarry Smith    Input Parameter:
804d382aafbSBarry Smith .  type - structure name of space to be allocated. Memory of size sizeof(type) is allocated
805d382aafbSBarry Smith 
806d382aafbSBarry Smith    Output Parameter:
807d382aafbSBarry Smith .  result - memory allocated
808d382aafbSBarry Smith 
809d382aafbSBarry Smith    Level: beginner
810d382aafbSBarry Smith 
811ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog()
812d382aafbSBarry Smith 
813d382aafbSBarry Smith   Concepts: memory allocation
814d382aafbSBarry Smith 
815d382aafbSBarry Smith M*/
816d382aafbSBarry Smith #define PetscNew(A,b)      (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A)))
817ad0619ddSBarry Smith 
818ad0619ddSBarry Smith /*MC
819ad0619ddSBarry Smith    PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated
820ad0619ddSBarry Smith          with the given object using PetscLogObjectMemory().
821ad0619ddSBarry Smith 
822ad0619ddSBarry Smith    Synopsis:
823ad0619ddSBarry Smith    PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result)
824ad0619ddSBarry Smith 
825ad0619ddSBarry Smith    Not Collective
826ad0619ddSBarry Smith 
827ad0619ddSBarry Smith    Input Parameter:
828ad0619ddSBarry Smith +  obj - object memory is logged to
829ad0619ddSBarry Smith -  type - structure name of space to be allocated. Memory of size sizeof(type) is allocated
830ad0619ddSBarry Smith 
831ad0619ddSBarry Smith    Output Parameter:
832ad0619ddSBarry Smith .  result - memory allocated
833ad0619ddSBarry Smith 
834ad0619ddSBarry Smith    Level: developer
835ad0619ddSBarry Smith 
836ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory()
837ad0619ddSBarry Smith 
838ad0619ddSBarry Smith   Concepts: memory allocation
839ad0619ddSBarry Smith 
840ad0619ddSBarry Smith M*/
841d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0))
842d382aafbSBarry Smith 
843d382aafbSBarry Smith /*MC
844d382aafbSBarry Smith    PetscFree - Frees memory
845d382aafbSBarry Smith 
846eca87e8dSBarry Smith    Synopsis:
847eca87e8dSBarry Smith    PetscErrorCode PetscFree(void *memory)
848eca87e8dSBarry Smith 
849eca87e8dSBarry Smith    Not Collective
850eca87e8dSBarry Smith 
851d382aafbSBarry Smith    Input Parameter:
852d382aafbSBarry Smith .   memory - memory to free (the pointer is ALWAYS set to 0 upon sucess)
853d382aafbSBarry Smith 
854d382aafbSBarry Smith    Level: beginner
855d382aafbSBarry Smith 
856d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscNew() or PetscMalloc()
857d382aafbSBarry Smith 
858d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid()
859d382aafbSBarry Smith 
860d382aafbSBarry Smith   Concepts: memory allocation
861d382aafbSBarry Smith 
862d382aafbSBarry Smith M*/
86312537b14SJed Brown #define PetscFree(a)   ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0)))
864d382aafbSBarry Smith 
865d382aafbSBarry Smith /*MC
866d382aafbSBarry Smith    PetscFreeVoid - Frees memory
867d382aafbSBarry Smith 
868d382aafbSBarry Smith    Synopsis:
869d382aafbSBarry Smith    void PetscFreeVoid(void *memory)
870d382aafbSBarry Smith 
871eca87e8dSBarry Smith    Not Collective
872eca87e8dSBarry Smith 
873eca87e8dSBarry Smith    Input Parameter:
874eca87e8dSBarry Smith .   memory - memory to free
875eca87e8dSBarry Smith 
876d382aafbSBarry Smith    Level: beginner
877d382aafbSBarry Smith 
878d382aafbSBarry Smith    Notes: This is different from PetscFree() in that no error code is returned
879d382aafbSBarry Smith 
880d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc()
881d382aafbSBarry Smith 
882d382aafbSBarry Smith   Concepts: memory allocation
883d382aafbSBarry Smith 
884d382aafbSBarry Smith M*/
8852714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0)
886d382aafbSBarry Smith 
887d382aafbSBarry Smith 
888d382aafbSBarry Smith /*MC
889d382aafbSBarry Smith    PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2()
890d382aafbSBarry Smith 
891eca87e8dSBarry Smith    Synopsis:
892eca87e8dSBarry Smith    PetscErrorCode PetscFree2(void *memory1,void *memory2)
893eca87e8dSBarry Smith 
894eca87e8dSBarry Smith    Not Collective
895eca87e8dSBarry Smith 
896d382aafbSBarry Smith    Input Parameter:
897d382aafbSBarry Smith +   memory1 - memory to free
898d382aafbSBarry Smith -   memory2 - 2nd memory to free
899d382aafbSBarry Smith 
900d382aafbSBarry Smith    Level: developer
901d382aafbSBarry Smith 
902d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc2()
903d382aafbSBarry Smith 
904d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree()
905d382aafbSBarry Smith 
906d382aafbSBarry Smith   Concepts: memory allocation
907d382aafbSBarry Smith 
908d382aafbSBarry Smith M*/
909d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
910d382aafbSBarry Smith #define PetscFree2(m1,m2)   (PetscFree(m2) || PetscFree(m1))
911d382aafbSBarry Smith #else
91281dabb53SJed Brown #define PetscFree2(m1,m2)   ((m2)=0, PetscFree(m1))
913d382aafbSBarry Smith #endif
914d382aafbSBarry Smith 
915d382aafbSBarry Smith /*MC
916d382aafbSBarry Smith    PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3()
917d382aafbSBarry Smith 
918eca87e8dSBarry Smith    Synopsis:
919eca87e8dSBarry Smith    PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3)
920eca87e8dSBarry Smith 
921eca87e8dSBarry Smith    Not Collective
922eca87e8dSBarry Smith 
923d382aafbSBarry Smith    Input Parameter:
924d382aafbSBarry Smith +   memory1 - memory to free
925d382aafbSBarry Smith .   memory2 - 2nd memory to free
926d382aafbSBarry Smith -   memory3 - 3rd memory to free
927d382aafbSBarry Smith 
928d382aafbSBarry Smith    Level: developer
929d382aafbSBarry Smith 
930d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc3()
931d382aafbSBarry Smith 
932d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3()
933d382aafbSBarry Smith 
934d382aafbSBarry Smith   Concepts: memory allocation
935d382aafbSBarry Smith 
936d382aafbSBarry Smith M*/
937d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
938d382aafbSBarry Smith #define PetscFree3(m1,m2,m3)   (PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
939d382aafbSBarry Smith #else
94081dabb53SJed Brown #define PetscFree3(m1,m2,m3)   ((m3)=0,(m2)=0,PetscFree(m1))
941d382aafbSBarry Smith #endif
942d382aafbSBarry Smith 
943d382aafbSBarry Smith /*MC
944d382aafbSBarry Smith    PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4()
945d382aafbSBarry Smith 
946eca87e8dSBarry Smith    Synopsis:
947eca87e8dSBarry Smith    PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4)
948eca87e8dSBarry Smith 
949eca87e8dSBarry Smith    Not Collective
950eca87e8dSBarry Smith 
951d382aafbSBarry Smith    Input Parameter:
952d382aafbSBarry Smith +   m1 - memory to free
953d382aafbSBarry Smith .   m2 - 2nd memory to free
954d382aafbSBarry Smith .   m3 - 3rd memory to free
955d382aafbSBarry Smith -   m4 - 4th memory to free
956d382aafbSBarry Smith 
957d382aafbSBarry Smith    Level: developer
958d382aafbSBarry Smith 
959d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc4()
960d382aafbSBarry Smith 
961d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4()
962d382aafbSBarry Smith 
963d382aafbSBarry Smith   Concepts: memory allocation
964d382aafbSBarry Smith 
965d382aafbSBarry Smith M*/
966d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
967d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4)   (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
968d382aafbSBarry Smith #else
96981dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4)   ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
970d382aafbSBarry Smith #endif
971d382aafbSBarry Smith 
972d382aafbSBarry Smith /*MC
973d382aafbSBarry Smith    PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5()
974d382aafbSBarry Smith 
975eca87e8dSBarry Smith    Synopsis:
976eca87e8dSBarry Smith    PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5)
977eca87e8dSBarry Smith 
978eca87e8dSBarry Smith    Not Collective
979eca87e8dSBarry Smith 
980d382aafbSBarry Smith    Input Parameter:
981d382aafbSBarry Smith +   m1 - memory to free
982d382aafbSBarry Smith .   m2 - 2nd memory to free
983d382aafbSBarry Smith .   m3 - 3rd memory to free
984d382aafbSBarry Smith .   m4 - 4th memory to free
985d382aafbSBarry Smith -   m5 - 5th memory to free
986d382aafbSBarry Smith 
987d382aafbSBarry Smith    Level: developer
988d382aafbSBarry Smith 
989d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc5()
990d382aafbSBarry Smith 
991d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5()
992d382aafbSBarry Smith 
993d382aafbSBarry Smith   Concepts: memory allocation
994d382aafbSBarry Smith 
995d382aafbSBarry Smith M*/
996d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
997d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5)   (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
998d382aafbSBarry Smith #else
99981dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5)   ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1000d382aafbSBarry Smith #endif
1001d382aafbSBarry Smith 
1002d382aafbSBarry Smith 
1003d382aafbSBarry Smith /*MC
1004d382aafbSBarry Smith    PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6()
1005d382aafbSBarry Smith 
1006eca87e8dSBarry Smith    Synopsis:
1007eca87e8dSBarry Smith    PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6)
1008eca87e8dSBarry Smith 
1009eca87e8dSBarry Smith    Not Collective
1010eca87e8dSBarry Smith 
1011d382aafbSBarry Smith    Input Parameter:
1012d382aafbSBarry Smith +   m1 - memory to free
1013d382aafbSBarry Smith .   m2 - 2nd memory to free
1014d382aafbSBarry Smith .   m3 - 3rd memory to free
1015d382aafbSBarry Smith .   m4 - 4th memory to free
1016d382aafbSBarry Smith .   m5 - 5th memory to free
1017d382aafbSBarry Smith -   m6 - 6th memory to free
1018d382aafbSBarry Smith 
1019d382aafbSBarry Smith 
1020d382aafbSBarry Smith    Level: developer
1021d382aafbSBarry Smith 
1022d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc6()
1023d382aafbSBarry Smith 
1024d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6()
1025d382aafbSBarry Smith 
1026d382aafbSBarry Smith   Concepts: memory allocation
1027d382aafbSBarry Smith 
1028d382aafbSBarry Smith M*/
1029d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1030d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6)   (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1031d382aafbSBarry Smith #else
103281dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6)   ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1033d382aafbSBarry Smith #endif
1034d382aafbSBarry Smith 
1035d382aafbSBarry Smith /*MC
1036d382aafbSBarry Smith    PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7()
1037d382aafbSBarry Smith 
1038eca87e8dSBarry Smith    Synopsis:
1039eca87e8dSBarry Smith    PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7)
1040eca87e8dSBarry Smith 
1041eca87e8dSBarry Smith    Not Collective
1042eca87e8dSBarry Smith 
1043d382aafbSBarry Smith    Input Parameter:
1044d382aafbSBarry Smith +   m1 - memory to free
1045d382aafbSBarry Smith .   m2 - 2nd memory to free
1046d382aafbSBarry Smith .   m3 - 3rd memory to free
1047d382aafbSBarry Smith .   m4 - 4th memory to free
1048d382aafbSBarry Smith .   m5 - 5th memory to free
1049d382aafbSBarry Smith .   m6 - 6th memory to free
1050d382aafbSBarry Smith -   m7 - 7th memory to free
1051d382aafbSBarry Smith 
1052d382aafbSBarry Smith 
1053d382aafbSBarry Smith    Level: developer
1054d382aafbSBarry Smith 
1055d382aafbSBarry Smith    Notes: Memory must have been obtained with PetscMalloc7()
1056d382aafbSBarry Smith 
1057d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(),
1058d382aafbSBarry Smith           PetscMalloc7()
1059d382aafbSBarry Smith 
1060d382aafbSBarry Smith   Concepts: memory allocation
1061d382aafbSBarry Smith 
1062d382aafbSBarry Smith M*/
1063d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1064d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7)   (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1))
1065d382aafbSBarry Smith #else
106681dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7)   ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1))
1067d382aafbSBarry Smith #endif
1068d382aafbSBarry Smith 
1069014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**);
1070014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]);
1071014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[]));
1072014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void);
1073d382aafbSBarry Smith 
1074d382aafbSBarry Smith /*
1075a5057860SBarry Smith     PetscLogDouble variables are used to contain double precision numbers
1076a5057860SBarry Smith   that are not used in the numerical computations, but rather in logging,
1077a5057860SBarry Smith   timing etc.
1078a5057860SBarry Smith */
1079a5057860SBarry Smith typedef double PetscLogDouble;
1080a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE
1081a5057860SBarry Smith 
1082a5057860SBarry Smith /*
108366d669d6SBarry Smith    Routines for tracing memory corruption/bleeding with default PETSc  memory allocation
1084d382aafbSBarry Smith */
1085014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *);
1086014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *);
1087014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *);
1088014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *);
1089014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool);
1090014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]);
1091014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void);
1092014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*);
1093d382aafbSBarry Smith 
1094d382aafbSBarry Smith /*E
1095d382aafbSBarry Smith     PetscDataType - Used for handling different basic data types.
1096d382aafbSBarry Smith 
1097d382aafbSBarry Smith    Level: beginner
1098d382aafbSBarry Smith 
1099d382aafbSBarry Smith    Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not?
1100d382aafbSBarry Smith 
1101d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(),
1102d382aafbSBarry Smith           PetscDataTypeGetSize()
1103d382aafbSBarry Smith 
1104d382aafbSBarry Smith E*/
1105d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5,
110659a34000SBarry Smith               PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10} PetscDataType;
1107014dd563SJed Brown PETSC_EXTERN const char *PetscDataTypes[];
1108d382aafbSBarry Smith 
1109d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX)
1110d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_COMPLEX
1111d382aafbSBarry Smith #else
1112ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE)
1113d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_FLOAT
111459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128)
111559a34000SBarry Smith #define  PETSC_SCALAR  PETSC___FLOAT128
1116d382aafbSBarry Smith #else
1117d382aafbSBarry Smith #define  PETSC_SCALAR  PETSC_DOUBLE
1118d382aafbSBarry Smith #endif
1119d382aafbSBarry Smith #endif
1120ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE)
1121d382aafbSBarry Smith #define  PETSC_REAL  PETSC_FLOAT
112259a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128)
112359a34000SBarry Smith #define  PETSC_REAL  PETSC___FLOAT128
1124d382aafbSBarry Smith #else
1125d382aafbSBarry Smith #define  PETSC_REAL  PETSC_DOUBLE
1126d382aafbSBarry Smith #endif
1127d382aafbSBarry Smith #define  PETSC_FORTRANADDR  PETSC_LONG
1128d382aafbSBarry Smith 
1129014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*);
1130014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*);
1131014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*);
1132d382aafbSBarry Smith 
1133d382aafbSBarry Smith /*
1134d382aafbSBarry Smith     Basic memory and string operations. These are usually simple wrappers
1135d382aafbSBarry Smith    around the basic Unix system calls, but a few of them have additional
1136d382aafbSBarry Smith    functionality and/or error checking.
1137d382aafbSBarry Smith */
1138014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType);
1139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t);
1140014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool  *);
1141014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*);
1142014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],int*,char ***);
1143014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **);
1144014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool  *);
1145014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool  *);
1146014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *);
1147014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *);
1148014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]);
1149014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]);
1150014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t);
1151014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t);
1152014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]);
1153014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]);
1154014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]);
1155014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]);
1156014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]);
1157014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*);
1158014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*);
1159014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]);
116047340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***);
11616fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***);
1162014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t);
1163d382aafbSBarry Smith 
1164d382aafbSBarry Smith /*S
1165d382aafbSBarry Smith     PetscToken - 'Token' used for managing tokenizing strings
1166d382aafbSBarry Smith 
1167d382aafbSBarry Smith   Level: intermediate
1168d382aafbSBarry Smith 
1169d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy()
1170d382aafbSBarry Smith S*/
1171d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken;
1172d382aafbSBarry Smith 
1173014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*);
1174014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]);
1175014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*);
1176d382aafbSBarry Smith 
1177d382aafbSBarry Smith /*
1178d382aafbSBarry Smith    These are  MPI operations for MPI_Allreduce() etc
1179d382aafbSBarry Smith */
1180014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op;
11812414b3c7SJed Brown #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128)
1182014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM;
11832414b3c7SJed Brown #else
11842414b3c7SJed Brown #define MPIU_SUM MPI_SUM
11852414b3c7SJed Brown #endif
11862414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128)
1187014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX;
1188014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN;
1189d9822059SBarry Smith #else
1190d9822059SBarry Smith #define MPIU_MAX MPI_MAX
1191d9822059SBarry Smith #define MPIU_MIN MPI_MIN
1192d9822059SBarry Smith #endif
1193014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*);
1194d382aafbSBarry Smith 
1195014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm);
1196014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm);
1197eb3f98d2SBarry Smith 
1198d382aafbSBarry Smith /*S
1199d382aafbSBarry Smith      PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc
1200d382aafbSBarry Smith 
1201d382aafbSBarry Smith    Level: beginner
1202d382aafbSBarry Smith 
12032981ebdbSBarry Smith    Note: This is the base class from which all PETSc objects are derived from.
1204d382aafbSBarry Smith 
12051890ba74SBarry Smith .seealso:  PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc()
1206d382aafbSBarry Smith S*/
1207d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject;
1208d382aafbSBarry Smith 
1209d382aafbSBarry Smith /*S
1210d382aafbSBarry Smith      PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed
1211d382aafbSBarry Smith       by string name
1212d382aafbSBarry Smith 
1213d382aafbSBarry Smith    Level: advanced
1214d382aafbSBarry Smith 
12152981ebdbSBarry Smith .seealso:  PetscFListAdd(), PetscFListDestroy(), PetscOpFlist
1216d382aafbSBarry Smith S*/
1217d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList;
1218d382aafbSBarry Smith 
1219e4d1774bSDmitry Karpeev /*S
1220e4d1774bSDmitry Karpeev      PetscOpFList - Linked list of operations on objects, implemented by functions, possibly stored in dynamic libraries,
1221e4d1774bSDmitry Karpeev                     accessed by string op name together with string argument types.
1222e4d1774bSDmitry Karpeev 
1223e4d1774bSDmitry Karpeev    Level: advanced
1224e4d1774bSDmitry Karpeev 
12252981ebdbSBarry Smith .seealso:  PetscFList, PetscOpFListAdd(), PetscOpFListFind(), PetscOpFListDestroy()
1226e4d1774bSDmitry Karpeev S*/
1227e4d1774bSDmitry Karpeev typedef struct _n_PetscOpFList *PetscOpFList;
1228e4d1774bSDmitry Karpeev 
1229d382aafbSBarry Smith /*E
1230d382aafbSBarry Smith   PetscFileMode - Access mode for a file.
1231d382aafbSBarry Smith 
1232d382aafbSBarry Smith   Level: beginner
1233d382aafbSBarry Smith 
1234d382aafbSBarry Smith   FILE_MODE_READ - open a file at its beginning for reading
1235d382aafbSBarry Smith 
1236d382aafbSBarry Smith   FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist)
1237d382aafbSBarry Smith 
1238d382aafbSBarry Smith   FILE_MODE_APPEND - open a file at end for writing
1239d382aafbSBarry Smith 
1240d382aafbSBarry Smith   FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing
1241d382aafbSBarry Smith 
1242d382aafbSBarry Smith   FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end
1243d382aafbSBarry Smith 
1244d382aafbSBarry Smith .seealso: PetscViewerFileSetMode()
1245d382aafbSBarry Smith E*/
1246d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode;
1247d382aafbSBarry Smith 
1248d382aafbSBarry Smith #include "petscviewer.h"
1249d382aafbSBarry Smith #include "petscoptions.h"
1250d382aafbSBarry Smith 
12510700a824SBarry Smith #define PETSC_SMALLEST_CLASSID  1211211
1252014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID;
1253014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID;
1254014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *);
1255d382aafbSBarry Smith 
1256d382aafbSBarry Smith /*
1257d382aafbSBarry Smith    Routines that get memory usage information from the OS
1258d382aafbSBarry Smith */
1259014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *);
1260014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *);
1261014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void);
1262014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]);
1263d382aafbSBarry Smith 
1264014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []);
1265014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTime(PetscLogDouble*);
1266014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetCPUTime(PetscLogDouble*);
1267014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal);
1268d382aafbSBarry Smith 
1269d382aafbSBarry Smith /*
1270d382aafbSBarry Smith    Initialization of PETSc
1271d382aafbSBarry Smith */
1272014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]);
1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]);
1274014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void);
1275014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *);
1276014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *);
1277014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void);
1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void);
1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***);
1280014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***);
1281014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **);
1282d382aafbSBarry Smith 
1283014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void);
1284014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(const char[]);
1285d382aafbSBarry Smith 
1286014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD;
1287014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*);
1288014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt);
1289014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void);
1290014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*);
1291014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*);
1292014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*);
1293014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**);
1294d382aafbSBarry Smith 
1295014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]);
1296014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void);
1297014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void);
1298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]);
1299d382aafbSBarry Smith 
1300d382aafbSBarry Smith /*
1301d382aafbSBarry Smith      These are so that in extern C code we can caste function pointers to non-extern C
13022981ebdbSBarry Smith    function pointers. Since the regular C++ code expects its function pointers to be C++
1303d382aafbSBarry Smith */
1304638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void);
1305638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void);
1306638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void);
1307d382aafbSBarry Smith 
1308d382aafbSBarry Smith /*
1309d382aafbSBarry Smith    PetscTryMethod - Queries an object for a method, if it exists then calls it.
1310d382aafbSBarry Smith               These are intended to be used only inside PETSc functions.
1311503cfb0cSBarry Smith 
1312503cfb0cSBarry Smith    Level: developer
1313503cfb0cSBarry Smith 
1314503cfb0cSBarry Smith .seealso: PetscUseMethod()
1315d382aafbSBarry Smith */
1316d382aafbSBarry Smith #define  PetscTryMethod(obj,A,B,C) \
1317d382aafbSBarry Smith   0;{ PetscErrorCode (*f)B, __ierr; \
1318d382aafbSBarry Smith     __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \
1319d382aafbSBarry Smith     if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\
1320d382aafbSBarry Smith   }
1321503cfb0cSBarry Smith 
1322503cfb0cSBarry Smith /*
1323503cfb0cSBarry Smith    PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error.
1324503cfb0cSBarry Smith               These are intended to be used only inside PETSc functions.
1325503cfb0cSBarry Smith 
1326503cfb0cSBarry Smith    Level: developer
1327503cfb0cSBarry Smith 
1328503cfb0cSBarry Smith .seealso: PetscTryMethod()
1329503cfb0cSBarry Smith */
1330d382aafbSBarry Smith #define  PetscUseMethod(obj,A,B,C) \
1331d382aafbSBarry Smith   0;{ PetscErrorCode (*f)B, __ierr; \
1332d382aafbSBarry Smith     __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \
1333d382aafbSBarry Smith     if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\
1334703c66c1SJed Brown     else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \
1335d382aafbSBarry Smith   }
1336503cfb0cSBarry Smith 
1337d382aafbSBarry Smith /*
1338d382aafbSBarry Smith     Functions that can act on any PETSc object.
1339d382aafbSBarry Smith */
1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*);
1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *);
1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *);
1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]);
1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []);
1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision);
1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]);
1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]);
1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]);
1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]);
1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt);
1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*);
1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt);
1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject);
1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*);
1355014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject);
1356014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *);
1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer);
1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject);
1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]);
1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *);
1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void));
1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject);
1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject);
1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *);
1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*);
1366014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject);
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject);
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*);
1369d382aafbSBarry Smith 
1370d382aafbSBarry Smith /*MC
1371d382aafbSBarry Smith    PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object.
1372d382aafbSBarry Smith 
1373eca87e8dSBarry Smith     Synopsis:
1374eca87e8dSBarry Smith     PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr)
1375eca87e8dSBarry Smith 
1376ad4df100SBarry Smith    Logically Collective on PetscObject
1377d382aafbSBarry Smith 
1378d382aafbSBarry Smith    Input Parameters:
1379d382aafbSBarry Smith +  obj - the PETSc object; this must be cast with a (PetscObject), for example,
1380d382aafbSBarry Smith          PetscObjectCompose((PetscObject)mat,...);
1381d382aafbSBarry Smith .  name - name associated with the child function
1382d382aafbSBarry Smith .  fname - name of the function
1383d382aafbSBarry Smith -  ptr - function pointer (or PETSC_NULL if using dynamic libraries)
1384d382aafbSBarry Smith 
1385d382aafbSBarry Smith    Level: advanced
1386d382aafbSBarry Smith 
1387d382aafbSBarry Smith 
1388d382aafbSBarry Smith    Notes:
1389d382aafbSBarry Smith    To remove a registered routine, pass in a PETSC_NULL rname and fnc().
1390d382aafbSBarry Smith 
1391d382aafbSBarry Smith    PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as
1392d382aafbSBarry Smith    Mat, Vec, KSP, SNES, etc.) or any user-provided object.
1393d382aafbSBarry Smith 
1394d382aafbSBarry Smith    The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to
139520de1f94SBarry Smith    work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading)
1396d382aafbSBarry Smith    enabled.
1397d382aafbSBarry Smith 
1398d382aafbSBarry Smith    Concepts: objects^composing functions
1399d382aafbSBarry Smith    Concepts: composing functions
1400d382aafbSBarry Smith    Concepts: functions^querying
1401d382aafbSBarry Smith    Concepts: objects^querying
1402d382aafbSBarry Smith    Concepts: querying objects
1403d382aafbSBarry Smith 
1404d382aafbSBarry Smith .seealso: PetscObjectQueryFunction()
1405d382aafbSBarry Smith M*/
1406d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
1407d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0)
1408d382aafbSBarry Smith #else
1409d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d))
1410d382aafbSBarry Smith #endif
1411d382aafbSBarry Smith 
1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void));
1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]);
1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]);
1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]);
1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]);
1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAMSPublish(PetscObject);
1418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectUnPublish(PetscObject);
1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]);
1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject);
1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void);
1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject);
1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *);
1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...);
1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void));
1426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void);
1427d382aafbSBarry Smith 
1428d382aafbSBarry Smith /*
1429d382aafbSBarry Smith     Defines PETSc error handling.
1430d382aafbSBarry Smith */
1431d382aafbSBarry Smith #include "petscerror.h"
1432d382aafbSBarry Smith 
1433d382aafbSBarry Smith /*S
1434503cfb0cSBarry Smith      PetscOList - Linked list of PETSc objects, each accessable by string name
1435d382aafbSBarry Smith 
14361d0fab5eSBarry Smith    Level: developer
1437d382aafbSBarry Smith 
14381d0fab5eSBarry Smith    Notes: Used by PetscObjectCompose() and PetscObjectQuery()
14391d0fab5eSBarry Smith 
14402981ebdbSBarry Smith .seealso:  PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFList
1441d382aafbSBarry Smith S*/
1442d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList;
1443d382aafbSBarry Smith 
1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListDestroy(PetscOList*);
1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*);
1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*);
1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject);
1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]);
1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *);
1450d382aafbSBarry Smith 
1451d382aafbSBarry Smith /*
1452503cfb0cSBarry Smith     Dynamic library lists. Lists of names of routines in objects or in dynamic
1453d382aafbSBarry Smith   link libraries that will be loaded as needed.
1454d382aafbSBarry Smith */
1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void));
1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListDestroy(PetscFList*);
1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void));
1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]);
1459d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
1460d382aafbSBarry Smith #define    PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0)
1461d382aafbSBarry Smith #else
1462d382aafbSBarry Smith #define    PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c)
1463d382aafbSBarry Smith #endif
1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *);
1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListView(PetscFList,PetscViewer);
1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListConcat(const char [],const char [],char []);
1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFListGet(PetscFList,char ***,int*);
1468d382aafbSBarry Smith 
146948703020SDmitry Karpeev /*
147048703020SDmitry Karpeev     Multiple dispatch operation function lists. Lists of names of routines with corresponding
147148703020SDmitry Karpeev     argument type names with function pointers or in dynamic link libraries that will be loaded
147248703020SDmitry Karpeev     as needed.  Search on the op name and argument type names.
147348703020SDmitry Karpeev */
1474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListAdd(MPI_Comm, PetscOpFList*,const char[],PetscVoidFunction, const char[], PetscInt, char*[]);
1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListDestroy(PetscOpFList*);
1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListFind(MPI_Comm, PetscOpFList, PetscVoidFunction*, const char[], PetscInt, char*[]);
1477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpFListView(PetscOpFList,PetscViewer);
14782981ebdbSBarry Smith 
1479d382aafbSBarry Smith /*S
1480d382aafbSBarry Smith      PetscDLLibrary - Linked list of dynamics libraries to search for functions
1481d382aafbSBarry Smith 
1482d382aafbSBarry Smith    Level: advanced
1483d382aafbSBarry Smith 
148420de1f94SBarry Smith    --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries
1485d382aafbSBarry Smith 
1486d382aafbSBarry Smith .seealso:  PetscDLLibraryOpen()
1487d382aafbSBarry Smith S*/
1488d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary;
1489014dd563SJed Brown PETSC_EXTERN PetscDLLibrary  PetscDLLibrariesLoaded;
1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]);
1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]);
1492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **);
1493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary);
1494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool  *);
1495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *);
1496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary);
1497d382aafbSBarry Smith 
1498d382aafbSBarry Smith /*
1499a5a3d712SDmitry Karpeev   PetscShell support.  Needs to be better documented.
150005846914SDmitry Karpeev   Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc.
150105846914SDmitry Karpeev */
1502a5a3d712SDmitry Karpeev #include "petscshell.h"
150305846914SDmitry Karpeev 
150405846914SDmitry Karpeev /*
1505d382aafbSBarry Smith      Useful utility routines
1506d382aafbSBarry Smith */
1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*);
1508014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*);
1509014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt);
1510014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt);
1511014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject);
1512014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*);
1513d382aafbSBarry Smith 
1514503cfb0cSBarry Smith /*
1515ace3abfcSBarry Smith     PetscNot - negates a logical type value and returns result as a PetscBool
1516503cfb0cSBarry Smith 
1517503cfb0cSBarry Smith     Notes: This is useful in cases like
1518503cfb0cSBarry Smith $     int        *a;
1519ace3abfcSBarry Smith $     PetscBool  flag = PetscNot(a)
1520ace3abfcSBarry Smith      where !a does not return a PetscBool  because we cannot provide a cast from int to PetscBool  in C.
1521503cfb0cSBarry Smith */
1522d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE)
1523503cfb0cSBarry Smith 
1524d382aafbSBarry Smith /*
1525d382aafbSBarry Smith     Defines basic graphics available from PETSc.
1526d382aafbSBarry Smith */
1527d382aafbSBarry Smith #include "petscdraw.h"
1528d382aafbSBarry Smith 
1529d382aafbSBarry Smith /*
1530d382aafbSBarry Smith     Defines the base data structures for all PETSc objects
1531d382aafbSBarry Smith */
1532b45d2f2cSJed Brown #include "petsc-private/petscimpl.h"
1533503cfb0cSBarry Smith 
1534238ccf28SShri Abhyankar 
1535d382aafbSBarry Smith /*MC
1536d382aafbSBarry Smith     PetscErrorPrintf - Prints error messages.
1537d382aafbSBarry Smith 
1538d382aafbSBarry Smith    Synopsis:
1539d382aafbSBarry Smith      PetscErrorCode (*PetscErrorPrintf)(const char format[],...);
1540d382aafbSBarry Smith 
1541eca87e8dSBarry Smith     Not Collective
1542eca87e8dSBarry Smith 
1543d382aafbSBarry Smith     Input Parameters:
1544d382aafbSBarry Smith .   format - the usual printf() format string
1545d382aafbSBarry Smith 
1546d382aafbSBarry Smith    Options Database Keys:
1547d382aafbSBarry Smith +    -error_output_stdout - cause error messages to be printed to stdout instead of the
1548d382aafbSBarry Smith          (default) stderr
1549d382aafbSBarry Smith -    -error_output_none to turn off all printing of error messages (does not change the way the
1550d382aafbSBarry Smith           error is handled.)
1551d382aafbSBarry Smith 
1552d382aafbSBarry Smith    Notes: Use
1553d382aafbSBarry Smith $     PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the
1554d382aafbSBarry Smith $                        error is handled.) and
1555d382aafbSBarry Smith $     PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on
1556c9a19010SBarry Smith $        of you can use your own function
1557d382aafbSBarry Smith 
1558d382aafbSBarry Smith           Use
1559d382aafbSBarry Smith      PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file.
1560d382aafbSBarry Smith      PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file.
1561d382aafbSBarry Smith 
1562d382aafbSBarry Smith           Use
1563d382aafbSBarry Smith       PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print
1564d382aafbSBarry Smith 
1565d382aafbSBarry Smith    Level: developer
1566d382aafbSBarry Smith 
1567d382aafbSBarry Smith     Fortran Note:
1568d382aafbSBarry Smith     This routine is not supported in Fortran.
1569d382aafbSBarry Smith 
1570d382aafbSBarry Smith     Concepts: error messages^printing
1571d382aafbSBarry Smith     Concepts: printing^error messages
1572d382aafbSBarry Smith 
1573c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf()
1574d382aafbSBarry Smith M*/
1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscErrorPrintf)(const char[],...);
1576d382aafbSBarry Smith 
1577d382aafbSBarry Smith /*MC
1578d382aafbSBarry Smith     PetscHelpPrintf - Prints help messages.
1579d382aafbSBarry Smith 
1580d382aafbSBarry Smith    Synopsis:
1581d382aafbSBarry Smith      PetscErrorCode (*PetscHelpPrintf)(const char format[],...);
1582d382aafbSBarry Smith 
1583eca87e8dSBarry Smith     Not Collective
1584eca87e8dSBarry Smith 
1585d382aafbSBarry Smith     Input Parameters:
1586d382aafbSBarry Smith .   format - the usual printf() format string
1587d382aafbSBarry Smith 
1588d382aafbSBarry Smith    Level: developer
1589d382aafbSBarry Smith 
1590d382aafbSBarry Smith     Fortran Note:
1591d382aafbSBarry Smith     This routine is not supported in Fortran.
1592d382aafbSBarry Smith 
1593d382aafbSBarry Smith     Concepts: help messages^printing
1594d382aafbSBarry Smith     Concepts: printing^help messages
1595d382aafbSBarry Smith 
1596d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf()
1597d382aafbSBarry Smith M*/
1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...);
1599d382aafbSBarry Smith 
1600fcfd50ebSBarry Smith /*
1601fcfd50ebSBarry Smith      Defines PETSc profiling.
1602fcfd50ebSBarry Smith */
1603fcfd50ebSBarry Smith #include "petsclog.h"
1604fcfd50ebSBarry Smith 
1605fcfd50ebSBarry Smith /*
1606fcfd50ebSBarry Smith           For locking, unlocking and destroying AMS memories associated with  PETSc objects. ams.h is included in petscviewer.h
1607fcfd50ebSBarry Smith */
1608fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS)
1609014dd563SJed Brown PETSC_EXTERN PetscBool PetscAMSPublishAll;
1610fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj)  ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem))
1611fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem))
1612fcfd50ebSBarry Smith #define PetscObjectDepublish(obj)   ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1;
1613fcfd50ebSBarry Smith #else
1614fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj)   0
1615fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj)  0
1616fcfd50ebSBarry Smith #define PetscObjectDepublish(obj)      0
1617fcfd50ebSBarry Smith #endif
1618fcfd50ebSBarry Smith 
1619fcfd50ebSBarry Smith /*
1620fcfd50ebSBarry Smith       Simple PETSc parallel IO for ASCII printing
1621fcfd50ebSBarry Smith */
1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]);
1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**);
1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*);
1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...);
1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...);
1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...);
1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...);
1629fcfd50ebSBarry Smith 
1630fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/
1631fcfd50ebSBarry Smith #include <stdarg.h>
1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list);
1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list);
1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list);
1635fcfd50ebSBarry Smith 
1636fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE)
1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list);
1638fcfd50ebSBarry Smith #endif
1639fcfd50ebSBarry Smith 
1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...);
1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...);
1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...);
1643d382aafbSBarry Smith 
1644d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN)
1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **);
1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*);
1647d382aafbSBarry Smith #endif
1648d382aafbSBarry Smith 
1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...);
1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...);
1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm);
1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]);
1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**);
1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**);
1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]);
1656d382aafbSBarry Smith 
1657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*);
1658d382aafbSBarry Smith 
1659d382aafbSBarry Smith /*S
1660d382aafbSBarry Smith      PetscContainer - Simple PETSc object that contains a pointer to any required data
1661d382aafbSBarry Smith 
1662d382aafbSBarry Smith    Level: advanced
1663d382aafbSBarry Smith 
1664d382aafbSBarry Smith .seealso:  PetscObject, PetscContainerCreate()
1665d382aafbSBarry Smith S*/
1666014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID;
1667d382aafbSBarry Smith typedef struct _p_PetscContainer*  PetscContainer;
1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **);
1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *);
1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*);
1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *);
1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*));
1673d382aafbSBarry Smith 
1674d382aafbSBarry Smith /*
1675d382aafbSBarry Smith    For use in debuggers
1676d382aafbSBarry Smith */
1677014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank;
1678014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize;
1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer);
1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer);
1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer);
1682d382aafbSBarry Smith 
1683d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H)
1684d382aafbSBarry Smith #include <memory.h>
1685d382aafbSBarry Smith #endif
1686d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H)
1687d382aafbSBarry Smith #include <stdlib.h>
1688d382aafbSBarry Smith #endif
1689d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H)
1690d382aafbSBarry Smith #include <strings.h>
1691d382aafbSBarry Smith #endif
1692d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H)
1693d382aafbSBarry Smith #include <string.h>
1694d382aafbSBarry Smith #endif
16956c7e564aSBarry Smith 
16964a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__)
1697d382aafbSBarry Smith #include <xmmintrin.h>
1698d382aafbSBarry Smith #endif
1699d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H)
1700d382aafbSBarry Smith #include <stdint.h>
1701d382aafbSBarry Smith #endif
1702d382aafbSBarry Smith 
1703fcfd50ebSBarry Smith #undef __FUNCT__
1704fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy"
1705d382aafbSBarry Smith /*@C
1706d382aafbSBarry Smith    PetscMemcpy - Copies n bytes, beginning at location b, to the space
1707d382aafbSBarry Smith    beginning at location a. The two memory regions CANNOT overlap, use
1708d382aafbSBarry Smith    PetscMemmove() in that case.
1709d382aafbSBarry Smith 
1710d382aafbSBarry Smith    Not Collective
1711d382aafbSBarry Smith 
1712d382aafbSBarry Smith    Input Parameters:
1713d382aafbSBarry Smith +  b - pointer to initial memory space
1714d382aafbSBarry Smith -  n - length (in bytes) of space to copy
1715d382aafbSBarry Smith 
1716d382aafbSBarry Smith    Output Parameter:
1717d382aafbSBarry Smith .  a - pointer to copy space
1718d382aafbSBarry Smith 
1719d382aafbSBarry Smith    Level: intermediate
1720d382aafbSBarry Smith 
1721d382aafbSBarry Smith    Compile Option:
1722d382aafbSBarry Smith     PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used
1723d382aafbSBarry Smith                                   for memory copies on double precision values.
1724d382aafbSBarry Smith     PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used
1725d382aafbSBarry Smith                                   for memory copies on double precision values.
1726d382aafbSBarry Smith     PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used
1727d382aafbSBarry Smith                                   for memory copies on double precision values.
1728d382aafbSBarry Smith 
1729d382aafbSBarry Smith    Note:
1730d382aafbSBarry Smith    This routine is analogous to memcpy().
1731d382aafbSBarry Smith 
1732503cfb0cSBarry Smith    Developer Note: this is inlined for fastest performance
1733503cfb0cSBarry Smith 
1734d382aafbSBarry Smith   Concepts: memory^copying
1735d382aafbSBarry Smith   Concepts: copying^memory
1736d382aafbSBarry Smith 
1737d382aafbSBarry Smith .seealso: PetscMemmove()
1738d382aafbSBarry Smith 
1739d382aafbSBarry Smith @*/
17407087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode  PetscMemcpy(void *a,const void *b,size_t n)
1741d382aafbSBarry Smith {
1742d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1743d382aafbSBarry Smith   unsigned long al = (unsigned long) a,bl = (unsigned long) b;
1744d382aafbSBarry Smith   unsigned long nl = (unsigned long) n;
1745a7e36092SMatthew G Knepley   PetscFunctionBegin;
1746e32f2f54SBarry Smith   if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer");
1747e32f2f54SBarry Smith   if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer");
1748a7e36092SMatthew G Knepley #else
1749d382aafbSBarry Smith   PetscFunctionBegin;
1750a7e36092SMatthew G Knepley #endif
1751d382aafbSBarry Smith   if (a != b) {
1752d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1753e47d2de2SBarry Smith     if ((al > bl && (al - bl) < nl) || (bl - al) < nl)  SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\
1754d382aafbSBarry Smith               or make sure your copy regions and lengths are correct. \n\
1755d382aafbSBarry Smith               Length (bytes) %ld first address %ld second address %ld",nl,al,bl);
1756d382aafbSBarry Smith #endif
1757d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY))
1758d382aafbSBarry Smith    if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1759d382aafbSBarry Smith       size_t len = n/sizeof(PetscScalar);
1760d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY)
1761d382aafbSBarry Smith       PetscBLASInt one = 1,blen = PetscBLASIntCast(len);
1762d382aafbSBarry Smith       BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one);
1763d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY)
1764d382aafbSBarry Smith       fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a);
1765d382aafbSBarry Smith #else
1766d382aafbSBarry Smith       size_t      i;
1767d382aafbSBarry Smith       PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a;
1768d382aafbSBarry Smith       for (i=0; i<len; i++) y[i] = x[i];
1769d382aafbSBarry Smith #endif
1770d382aafbSBarry Smith     } else {
1771d382aafbSBarry Smith       memcpy((char*)(a),(char*)(b),n);
1772d382aafbSBarry Smith     }
1773d382aafbSBarry Smith #else
1774d382aafbSBarry Smith     memcpy((char*)(a),(char*)(b),n);
1775d382aafbSBarry Smith #endif
1776d382aafbSBarry Smith   }
1777d382aafbSBarry Smith   PetscFunctionReturn(0);
1778d382aafbSBarry Smith }
1779d382aafbSBarry Smith 
1780d382aafbSBarry Smith /*@C
1781d382aafbSBarry Smith    PetscMemzero - Zeros the specified memory.
1782d382aafbSBarry Smith 
1783d382aafbSBarry Smith    Not Collective
1784d382aafbSBarry Smith 
1785d382aafbSBarry Smith    Input Parameters:
1786d382aafbSBarry Smith +  a - pointer to beginning memory location
1787d382aafbSBarry Smith -  n - length (in bytes) of memory to initialize
1788d382aafbSBarry Smith 
1789d382aafbSBarry Smith    Level: intermediate
1790d382aafbSBarry Smith 
1791d382aafbSBarry Smith    Compile Option:
1792d382aafbSBarry Smith    PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens
1793d382aafbSBarry Smith   to be faster than the memset() routine. This flag causes the bzero() routine to be used.
1794d382aafbSBarry Smith 
1795503cfb0cSBarry Smith    Developer Note: this is inlined for fastest performance
1796503cfb0cSBarry Smith 
1797d382aafbSBarry Smith    Concepts: memory^zeroing
1798d382aafbSBarry Smith    Concepts: zeroing^memory
1799d382aafbSBarry Smith 
1800d382aafbSBarry Smith .seealso: PetscMemcpy()
1801d382aafbSBarry Smith @*/
18027087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode  PetscMemzero(void *a,size_t n)
1803d382aafbSBarry Smith {
1804d382aafbSBarry Smith   if (n > 0) {
1805d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG)
1806e32f2f54SBarry Smith     if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer");
1807d382aafbSBarry Smith #endif
1808d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO)
1809d382aafbSBarry Smith     if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1810d382aafbSBarry Smith       size_t      i,len = n/sizeof(PetscScalar);
1811d382aafbSBarry Smith       PetscScalar *x = (PetscScalar*)a;
1812d382aafbSBarry Smith       for (i=0; i<len; i++) x[i] = 0.0;
1813d382aafbSBarry Smith     } else {
1814d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO)
1815d382aafbSBarry Smith     if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) {
1816d382aafbSBarry Smith       PetscInt len = n/sizeof(PetscScalar);
1817d382aafbSBarry Smith       fortranzero_(&len,(PetscScalar*)a);
1818d382aafbSBarry Smith     } else {
1819d382aafbSBarry Smith #endif
1820d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO)
1821d382aafbSBarry Smith       bzero((char *)a,n);
1822d382aafbSBarry Smith #else
1823d382aafbSBarry Smith       memset((char*)a,0,n);
1824d382aafbSBarry Smith #endif
1825d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO)
1826d382aafbSBarry Smith     }
1827d382aafbSBarry Smith #endif
1828d382aafbSBarry Smith   }
1829d382aafbSBarry Smith   return 0;
1830d382aafbSBarry Smith }
1831d382aafbSBarry Smith 
1832d382aafbSBarry Smith /*MC
1833d382aafbSBarry Smith    PetscPrefetchBlock - Prefetches a block of memory
1834d382aafbSBarry Smith 
1835eca87e8dSBarry Smith    Synopsis:
1836eca87e8dSBarry Smith     void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t)
1837eca87e8dSBarry Smith 
1838d382aafbSBarry Smith    Not Collective
1839d382aafbSBarry Smith 
1840d382aafbSBarry Smith    Input Parameters:
1841d382aafbSBarry Smith +  a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar)
1842d382aafbSBarry Smith .  n - number of elements to fetch
1843d382aafbSBarry Smith .  rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors)
184450d8bf02SJed Brown -  t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note
1845d382aafbSBarry Smith 
1846d382aafbSBarry Smith    Level: developer
1847d382aafbSBarry Smith 
1848d382aafbSBarry Smith    Notes:
1849d382aafbSBarry Smith    The last two arguments (rw and t) must be compile-time constants.
1850d382aafbSBarry Smith 
185150d8bf02SJed Brown    Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality.  Not all architectures offer
185250d8bf02SJed Brown    equivalent locality hints, but the following macros are always defined to their closest analogue.
185350d8bf02SJed Brown +  PETSC_PREFETCH_HINT_NTA - Non-temporal.  Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched).
185463cf1ef0SJed Brown .  PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level.  Use this when the memory will be reused regularly despite necessary eviction from L1.
185563cf1ef0SJed Brown .  PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1).
185663cf1ef0SJed Brown -  PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only.  (On many systems, T0 and T1 are equivalent.)
1857d382aafbSBarry Smith 
1858d382aafbSBarry Smith    This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid
1859d382aafbSBarry Smith    address).
1860d382aafbSBarry Smith 
1861d382aafbSBarry Smith    Concepts: memory
1862d382aafbSBarry Smith M*/
1863d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do {                               \
1864d382aafbSBarry Smith     const char *_p = (const char*)(a),*_end = (const char*)((a)+(n));   \
1865d382aafbSBarry Smith     for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \
1866d382aafbSBarry Smith   } while (0)
1867d382aafbSBarry Smith 
1868d382aafbSBarry Smith /*
1869e3c5b3baSBarry Smith     Allows accessing MATLAB Engine
1870d382aafbSBarry Smith */
1871d382aafbSBarry Smith #include "petscmatlab.h"
1872d382aafbSBarry Smith 
1873d382aafbSBarry Smith /*
1874d382aafbSBarry Smith       Determine if some of the kernel computation routines use
1875d382aafbSBarry Smith    Fortran (rather than C) for the numerical calculations. On some machines
1876d382aafbSBarry Smith    and compilers (like complex numbers) the Fortran version of the routines
1877d382aafbSBarry Smith    is faster than the C/C++ versions. The flag --with-fortran-kernels
1878e2e64c6bSBarry Smith    should be used with ./configure to turn these on.
1879d382aafbSBarry Smith */
1880d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS)
1881d382aafbSBarry Smith 
1882d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL)
1883d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL
1884d382aafbSBarry Smith #endif
1885d382aafbSBarry Smith 
18865a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM)
18875a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM
1888d382aafbSBarry Smith #endif
1889d382aafbSBarry Smith 
1890d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ)
1891d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ
1892d382aafbSBarry Smith #endif
1893d382aafbSBarry Smith 
1894d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ)
1895d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ
1896d382aafbSBarry Smith #endif
1897d382aafbSBarry Smith 
1898d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM)
1899d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM
1900d382aafbSBarry Smith #endif
1901d382aafbSBarry Smith 
1902d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY)
1903d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY
1904d382aafbSBarry Smith #endif
1905d382aafbSBarry Smith 
1906d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ)
1907d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ
1908d382aafbSBarry Smith #endif
1909d382aafbSBarry Smith 
1910d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ)
1911d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ
1912d382aafbSBarry Smith #endif
1913d382aafbSBarry Smith 
1914d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ)
1915d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ
1916d382aafbSBarry Smith #endif
1917d382aafbSBarry Smith 
1918d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ)
1919d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ
1920d382aafbSBarry Smith #endif
1921d382aafbSBarry Smith 
1922d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT)
1923d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT
1924d382aafbSBarry Smith #endif
1925d382aafbSBarry Smith 
1926d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY)
1927d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY
1928d382aafbSBarry Smith #endif
1929d382aafbSBarry Smith 
1930d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX)
1931d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX
1932d382aafbSBarry Smith #endif
1933d382aafbSBarry Smith 
1934d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY)
1935d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY
1936d382aafbSBarry Smith #endif
1937d382aafbSBarry Smith 
1938d382aafbSBarry Smith #endif
1939d382aafbSBarry Smith 
1940d382aafbSBarry Smith /*
1941d382aafbSBarry Smith     Macros for indicating code that should be compiled with a C interface,
1942d382aafbSBarry Smith    rather than a C++ interface. Any routines that are dynamically loaded
1943d382aafbSBarry Smith    (such as the PCCreate_XXX() routines) must be wrapped so that the name
1944d382aafbSBarry Smith    mangler does not change the functions symbol name. This just hides the
1945d382aafbSBarry Smith    ugly extern "C" {} wrappers.
1946d382aafbSBarry Smith */
1947d382aafbSBarry Smith #if defined(__cplusplus)
1948014dd563SJed Brown #define PETSC_EXTERN_C extern "C" PETSC_VISIBILITY_PUBLIC
1949d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" {
1950d382aafbSBarry Smith #define EXTERN_C_END }
1951d382aafbSBarry Smith #else
1952014dd563SJed Brown #define PETSC_EXTERN_C PETSC_EXTERN
1953d382aafbSBarry Smith #define EXTERN_C_BEGIN
1954d382aafbSBarry Smith #define EXTERN_C_END
1955d382aafbSBarry Smith #endif
1956d382aafbSBarry Smith 
1957d382aafbSBarry Smith /* --------------------------------------------------------------------*/
1958d382aafbSBarry Smith 
1959d382aafbSBarry Smith /*MC
1960d382aafbSBarry Smith     MPI_Comm - the basic object used by MPI to determine which processes are involved in a
1961d382aafbSBarry Smith         communication
1962d382aafbSBarry Smith 
1963d382aafbSBarry Smith    Level: beginner
1964d382aafbSBarry Smith 
1965d382aafbSBarry Smith    Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm
1966d382aafbSBarry Smith 
1967d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF
1968d382aafbSBarry Smith M*/
1969d382aafbSBarry Smith 
1970d382aafbSBarry Smith /*MC
1971d382aafbSBarry Smith     PetscScalar - PETSc type that represents either a double precision real number, a double precision
1972d382aafbSBarry Smith        complex number, a single precision real number, a long double or an int - if the code is configured
1973d382aafbSBarry Smith        with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle
1974d382aafbSBarry Smith 
1975d382aafbSBarry Smith 
1976d382aafbSBarry Smith    Level: beginner
1977d382aafbSBarry Smith 
1978d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt
1979d382aafbSBarry Smith M*/
1980d382aafbSBarry Smith 
1981d382aafbSBarry Smith /*MC
1982d382aafbSBarry Smith     PetscReal - PETSc type that represents a real number version of PetscScalar
1983d382aafbSBarry Smith 
1984d382aafbSBarry Smith    Level: beginner
1985d382aafbSBarry Smith 
1986d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar
1987d382aafbSBarry Smith M*/
1988d382aafbSBarry Smith 
1989d382aafbSBarry Smith /*MC
1990d382aafbSBarry Smith     PassiveScalar - PETSc type that represents a PetscScalar
1991d382aafbSBarry Smith    Level: beginner
1992d382aafbSBarry Smith 
1993d382aafbSBarry Smith     This is the same as a PetscScalar except in code that is automatically differentiated it is
1994d382aafbSBarry Smith    treated as a constant (not an indendent or dependent variable)
1995d382aafbSBarry Smith 
1996d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar
1997d382aafbSBarry Smith M*/
1998d382aafbSBarry Smith 
1999d382aafbSBarry Smith /*MC
2000d382aafbSBarry Smith     PassiveReal - PETSc type that represents a PetscReal
2001d382aafbSBarry Smith 
2002d382aafbSBarry Smith    Level: beginner
2003d382aafbSBarry Smith 
2004d382aafbSBarry Smith     This is the same as a PetscReal except in code that is automatically differentiated it is
2005d382aafbSBarry Smith    treated as a constant (not an indendent or dependent variable)
2006d382aafbSBarry Smith 
2007d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar
2008d382aafbSBarry Smith M*/
2009d382aafbSBarry Smith 
2010d382aafbSBarry Smith /*MC
2011d382aafbSBarry Smith     MPIU_SCALAR - MPI datatype corresponding to PetscScalar
2012d382aafbSBarry Smith 
2013d382aafbSBarry Smith    Level: beginner
2014d382aafbSBarry Smith 
2015d382aafbSBarry Smith     Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars
2016d382aafbSBarry Smith           pass this value
2017d382aafbSBarry Smith 
2018d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT
2019d382aafbSBarry Smith M*/
2020d382aafbSBarry Smith 
2021d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO)
2022d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN)
2023014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*);
2024014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*);
2025d382aafbSBarry Smith #else
2026d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e)
2027d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e)
2028d382aafbSBarry Smith #endif
2029d382aafbSBarry Smith #endif
2030d382aafbSBarry Smith 
2031d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */
2032d382aafbSBarry Smith 
2033d382aafbSBarry Smith /* Limit MPI to 32-bits */
2034d382aafbSBarry Smith #define PETSC_MPI_INT_MAX  2147483647
2035d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647
2036d382aafbSBarry Smith /* Limit BLAS to 32-bits */
2037d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX  2147483647
2038d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647
2039d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */
2040d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX  2147483647
2041d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647
2042d382aafbSBarry Smith 
2043d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES)
2044e32f2f54SBarry Smith #define PetscMPIIntCheck(a)  if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI")
2045e32f2f54SBarry Smith #define PetscBLASIntCheck(a)  if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK")
2046eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a)
2047eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a)
2048d382aafbSBarry Smith 
2049d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4)
2050e32f2f54SBarry Smith #define PetscHDF5IntCheck(a)  if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5")
2051eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a)
2052d382aafbSBarry Smith #else
2053d382aafbSBarry Smith #define PetscHDF5IntCheck(a)
2054d382aafbSBarry Smith #define PetscHDF5IntCast(a) a
2055d382aafbSBarry Smith #endif
2056d382aafbSBarry Smith 
2057d382aafbSBarry Smith #else
2058d382aafbSBarry Smith #define PetscMPIIntCheck(a)
2059d382aafbSBarry Smith #define PetscBLASIntCheck(a)
2060d382aafbSBarry Smith #define PetscHDF5IntCheck(a)
2061d382aafbSBarry Smith #define PetscMPIIntCast(a) a
2062d382aafbSBarry Smith #define PetscBLASIntCast(a) a
2063d382aafbSBarry Smith #define PetscHDF5IntCast(a) a
2064d382aafbSBarry Smith #endif
2065d382aafbSBarry Smith 
2066d382aafbSBarry Smith /*
20672981ebdbSBarry Smith      The IBM include files define hz, here we hide it so that it may be used as a regular user variable.
2068d382aafbSBarry Smith */
2069d382aafbSBarry Smith #if defined(hz)
2070d382aafbSBarry Smith #undef hz
2071d382aafbSBarry Smith #endif
2072d382aafbSBarry Smith 
2073d382aafbSBarry Smith /*  For arrays that contain filenames or paths */
2074d382aafbSBarry Smith 
2075d382aafbSBarry Smith 
2076d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H)
2077d382aafbSBarry Smith #include <limits.h>
2078d382aafbSBarry Smith #endif
2079d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H)
2080d382aafbSBarry Smith #include <sys/param.h>
2081d382aafbSBarry Smith #endif
2082d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H)
2083d382aafbSBarry Smith #include <sys/types.h>
2084d382aafbSBarry Smith #endif
2085d382aafbSBarry Smith #if defined(MAXPATHLEN)
2086d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     MAXPATHLEN
2087d382aafbSBarry Smith #elif defined(MAX_PATH)
2088d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     MAX_PATH
2089d382aafbSBarry Smith #elif defined(_MAX_PATH)
2090d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     _MAX_PATH
2091d382aafbSBarry Smith #else
2092d382aafbSBarry Smith #  define PETSC_MAX_PATH_LEN     4096
2093d382aafbSBarry Smith #endif
2094d382aafbSBarry Smith 
2095d382aafbSBarry Smith /* Special support for C++ */
2096d382aafbSBarry Smith #include "petscsys.hh"
20976c7e564aSBarry Smith 
2098d382aafbSBarry Smith /*MC
2099d382aafbSBarry Smith 
2100d382aafbSBarry Smith     UsingFortran - Fortran can be used with PETSc in four distinct approaches
2101d382aafbSBarry Smith 
2102d382aafbSBarry Smith $    1) classic Fortran 77 style
2103d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc
2104d382aafbSBarry Smith $       XXX variablename
2105d382aafbSBarry Smith $      You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines
2106d382aafbSBarry Smith $      which end in F90; such as VecGetArrayF90()
2107d382aafbSBarry Smith $
2108d382aafbSBarry Smith $    2) classic Fortran 90 style
2109d1716517SSatish Balay $#include "finclude/petscXXX.h"
2110d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc
2111d382aafbSBarry Smith $       XXX variablename
2112d382aafbSBarry Smith $
2113d382aafbSBarry Smith $    3) Using Fortran modules
2114d1716517SSatish Balay $#include "finclude/petscXXXdef.h"
2115d382aafbSBarry Smith $         use petscXXXX
2116d382aafbSBarry Smith $       XXX variablename
2117d382aafbSBarry Smith $
2118d382aafbSBarry Smith $    4) Use Fortran modules and Fortran data types for PETSc types
2119d1716517SSatish Balay $#include "finclude/petscXXXdef.h"
2120d382aafbSBarry Smith $         use petscXXXX
2121d382aafbSBarry Smith $       type(XXX) variablename
2122e2e64c6bSBarry Smith $      To use this approach you must ./configure PETSc with the additional
2123d382aafbSBarry Smith $      option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules
2124d382aafbSBarry Smith 
2125d382aafbSBarry Smith     Finally if you absolutely do not want to use any #include you can use either
2126d382aafbSBarry Smith 
2127d382aafbSBarry Smith $    3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc
2128d382aafbSBarry Smith $        and you must declare the variables as integer, for example
2129d382aafbSBarry Smith $        integer variablename
2130d382aafbSBarry Smith $
2131d382aafbSBarry Smith $    4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type
2132d382aafbSBarry Smith $        names like PetscErrorCode, PetscInt etc. again for those you must use integer
2133d382aafbSBarry Smith 
2134d382aafbSBarry Smith    We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking
2135d382aafbSBarry Smith for only a few PETSc functions.
2136d382aafbSBarry Smith 
2137d382aafbSBarry Smith    Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value
2138d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues()
2139d382aafbSBarry Smith you cannot have something like
2140d382aafbSBarry Smith $      PetscInt row,col
2141d382aafbSBarry Smith $      PetscScalar val
2142d382aafbSBarry Smith $        ...
2143d382aafbSBarry Smith $      call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr)
2144d382aafbSBarry Smith You must instead have
2145d382aafbSBarry Smith $      PetscInt row(1),col(1)
2146d382aafbSBarry Smith $      PetscScalar val(1)
2147d382aafbSBarry Smith $        ...
2148d382aafbSBarry Smith $      call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr)
2149d382aafbSBarry Smith 
2150d382aafbSBarry Smith 
2151d382aafbSBarry Smith     See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches
2152d382aafbSBarry Smith 
2153d382aafbSBarry Smith     Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these
2154d382aafbSBarry Smith      automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h
2155d382aafbSBarry Smith 
2156d382aafbSBarry Smith      The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include
2157d382aafbSBarry Smith      their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors;  for example
2158d382aafbSBarry Smith      finclude/petscvec.h does NOT automatically include finclude/petscis.h
2159d382aafbSBarry Smith 
2160d382aafbSBarry Smith      The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the
2161e2e64c6bSBarry Smith      Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option.
2162d382aafbSBarry Smith 
2163d382aafbSBarry Smith      The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for
2164d382aafbSBarry Smith      the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90).
2165d382aafbSBarry Smith 
2166d382aafbSBarry Smith      The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated
2167d382aafbSBarry Smith      automatically by "make allfortranstubs".
2168d382aafbSBarry Smith 
2169e2e64c6bSBarry Smith      The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure
2170d382aafbSBarry Smith      was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically
2171d382aafbSBarry Smith      include their predecessors
2172d382aafbSBarry Smith 
2173d382aafbSBarry Smith     Level: beginner
2174d382aafbSBarry Smith 
2175d382aafbSBarry Smith M*/
2176d382aafbSBarry Smith 
2177014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t);
2178014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t);
2179014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t);
2180014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t);
2181014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]);
2182014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t);
2183d382aafbSBarry Smith 
2184014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]);
2185014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]);
2186014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]);
2187014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]);
2188014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]);
2189014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*);
2190014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]);
2191014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]);
2192014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]);
2193014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]);
2194014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]);
2195014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]);
2196014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**);
2197014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**);
2198d382aafbSBarry Smith 
2199014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void);
2200014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t);
2201d382aafbSBarry Smith 
220276bdecfbSBarry Smith /*J
2203d382aafbSBarry Smith     PetscRandomType - String with the name of a PETSc randomizer
2204d382aafbSBarry Smith        with an optional dynamic library name, for example
2205d382aafbSBarry Smith        http://www.mcs.anl.gov/petsc/lib.a:myrandcreate()
2206d382aafbSBarry Smith 
2207d382aafbSBarry Smith    Level: beginner
2208d382aafbSBarry Smith 
2209e2e64c6bSBarry Smith    Notes: to use the SPRNG you must have ./configure PETSc
2210d382aafbSBarry Smith    with the option --download-sprng
2211d382aafbSBarry Smith 
2212d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom
221376bdecfbSBarry Smith J*/
2214d382aafbSBarry Smith #define PetscRandomType char*
2215d382aafbSBarry Smith #define PETSCRAND       "rand"
2216d382aafbSBarry Smith #define PETSCRAND48     "rand48"
2217d382aafbSBarry Smith #define PETSCSPRNG      "sprng"
2218d382aafbSBarry Smith 
2219d382aafbSBarry Smith /* Logging support */
2220014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID;
2221d382aafbSBarry Smith 
2222014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(const char[]);
2223d382aafbSBarry Smith 
2224d382aafbSBarry Smith /*S
2225d382aafbSBarry Smith      PetscRandom - Abstract PETSc object that manages generating random numbers
2226d382aafbSBarry Smith 
2227d382aafbSBarry Smith    Level: intermediate
2228d382aafbSBarry Smith 
2229d382aafbSBarry Smith   Concepts: random numbers
2230d382aafbSBarry Smith 
2231d382aafbSBarry Smith .seealso:  PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType
2232d382aafbSBarry Smith S*/
2233d382aafbSBarry Smith typedef struct _p_PetscRandom*   PetscRandom;
2234d382aafbSBarry Smith 
2235d382aafbSBarry Smith /* Dynamic creation and loading functions */
2236014dd563SJed Brown PETSC_EXTERN PetscFList PetscRandomList;
2237014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled;
2238d382aafbSBarry Smith 
2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(const char []);
2240014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom));
2241014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterDestroy(void);
2242014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType);
2243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom);
2244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*);
2245014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*);
2246014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer);
2247d382aafbSBarry Smith 
2248d382aafbSBarry Smith /*MC
2249d382aafbSBarry Smith   PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation
2250d382aafbSBarry Smith 
2251d382aafbSBarry Smith   Synopsis:
22521890ba74SBarry Smith   PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom))
2253d382aafbSBarry Smith 
2254d382aafbSBarry Smith   Not Collective
2255d382aafbSBarry Smith 
2256d382aafbSBarry Smith   Input Parameters:
2257d382aafbSBarry Smith + name        - The name of a new user-defined creation routine
2258d382aafbSBarry Smith . path        - The path (either absolute or relative) of the library containing this routine
2259d382aafbSBarry Smith . func_name   - The name of routine to create method context
2260d382aafbSBarry Smith - create_func - The creation routine itself
2261d382aafbSBarry Smith 
2262d382aafbSBarry Smith   Notes:
2263d382aafbSBarry Smith   PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators
2264d382aafbSBarry Smith 
2265d382aafbSBarry Smith   If dynamic libraries are used, then the fourth input argument (routine_create) is ignored.
2266d382aafbSBarry Smith 
2267d382aafbSBarry Smith   Sample usage:
2268d382aafbSBarry Smith .vb
2269d382aafbSBarry Smith     PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate);
2270d382aafbSBarry Smith .ve
2271d382aafbSBarry Smith 
2272d382aafbSBarry Smith   Then, your random type can be chosen with the procedural interface via
2273d382aafbSBarry Smith .vb
2274d382aafbSBarry Smith     PetscRandomCreate(MPI_Comm, PetscRandom *);
2275d382aafbSBarry Smith     PetscRandomSetType(PetscRandom,"my_random_name");
2276d382aafbSBarry Smith .ve
2277d382aafbSBarry Smith    or at runtime via the option
2278d382aafbSBarry Smith .vb
2279d382aafbSBarry Smith     -random_type my_random_name
2280d382aafbSBarry Smith .ve
2281d382aafbSBarry Smith 
2282d382aafbSBarry Smith   Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values.
2283d382aafbSBarry Smith 
2284d382aafbSBarry Smith          For an example of the code needed to interface your own random number generator see
2285d382aafbSBarry Smith          src/sys/random/impls/rand/rand.c
2286d382aafbSBarry Smith 
2287d382aafbSBarry Smith   Level: advanced
2288d382aafbSBarry Smith 
2289d382aafbSBarry Smith .keywords: PetscRandom, register
2290d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister()
2291d382aafbSBarry Smith M*/
2292d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
2293d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0)
2294d382aafbSBarry Smith #else
2295d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d)
2296d382aafbSBarry Smith #endif
2297d382aafbSBarry Smith 
2298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*);
2299014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*);
2300014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*);
2301014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*);
2302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar);
2303014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long);
2304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *);
2305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom);
2306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*);
2307d382aafbSBarry Smith 
2308014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t);
2309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t);
2310014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t);
2311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]);
2312014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t);
2313014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *);
2314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *);
2315d382aafbSBarry Smith 
2316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType);
2317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType);
2318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool );
2319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool );
2320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *);
2321014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int);
2322014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool  *);
2323014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool  *);
2324014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t);
2325014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *);
2326014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *);
2327014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpenSocket(char*,int,int*);
2328014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int);
2329d382aafbSBarry Smith 
2330d382aafbSBarry Smith /*
2331d382aafbSBarry Smith    In binary files variables are stored using the following lengths,
2332d382aafbSBarry Smith   regardless of how they are stored in memory on any one particular
2333d382aafbSBarry Smith   machine. Use these rather then sizeof() in computing sizes for
2334d382aafbSBarry Smith   PetscBinarySeek().
2335d382aafbSBarry Smith */
2336d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE   (32/8)
2337d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE  (32/8)
2338d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE  (8/8)
2339d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE  (16/8)
2340d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE  (64/8)
2341d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE  sizeof(PetscScalar)
2342d382aafbSBarry Smith 
2343d382aafbSBarry Smith /*E
2344d382aafbSBarry Smith   PetscBinarySeekType - argument to PetscBinarySeek()
2345d382aafbSBarry Smith 
2346d382aafbSBarry Smith   Level: advanced
2347d382aafbSBarry Smith 
2348d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek()
2349d382aafbSBarry Smith E*/
2350d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType;
2351014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*);
2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*);
2353014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt);
2354d382aafbSBarry Smith 
2355014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]);
2356014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool );
2357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void);
2358014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*);
2359014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void);
2360014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void);
2361d382aafbSBarry Smith 
2362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*);
2363014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**);
2364014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**);
2365014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**);
2366014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**);
2367d382aafbSBarry Smith 
2368014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool  *,PetscBool  *);
2369d382aafbSBarry Smith 
2370d382aafbSBarry Smith /*E
2371d382aafbSBarry Smith   InsertMode - Whether entries are inserted or added into vectors or matrices
2372d382aafbSBarry Smith 
2373d382aafbSBarry Smith   Level: beginner
2374d382aafbSBarry Smith 
2375d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2376d382aafbSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(),
2377d382aafbSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd()
2378d382aafbSBarry Smith E*/
237911f088b5SMatthew G Knepley  typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode;
2380d382aafbSBarry Smith 
2381d382aafbSBarry Smith /*MC
2382d382aafbSBarry Smith     INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value
2383d382aafbSBarry Smith 
2384d382aafbSBarry Smith     Level: beginner
2385d382aafbSBarry Smith 
2386d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2387eca87e8dSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES,
2388eca87e8dSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES
2389d382aafbSBarry Smith 
2390d382aafbSBarry Smith M*/
2391d382aafbSBarry Smith 
2392d382aafbSBarry Smith /*MC
2393d382aafbSBarry Smith     ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the
2394d382aafbSBarry Smith                 value into that location
2395d382aafbSBarry Smith 
2396d382aafbSBarry Smith     Level: beginner
2397d382aafbSBarry Smith 
2398d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(),
2399eca87e8dSBarry Smith           VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES,
2400eca87e8dSBarry Smith           MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES
2401d382aafbSBarry Smith 
2402d382aafbSBarry Smith M*/
2403d382aafbSBarry Smith 
2404d382aafbSBarry Smith /*MC
2405d382aafbSBarry Smith     MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location
2406d382aafbSBarry Smith 
2407d382aafbSBarry Smith     Level: beginner
2408d382aafbSBarry Smith 
2409d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES
2410d382aafbSBarry Smith 
2411d382aafbSBarry Smith M*/
2412d382aafbSBarry Smith 
2413d382aafbSBarry Smith /*S
2414d382aafbSBarry Smith    PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT
2415d382aafbSBarry Smith 
2416d382aafbSBarry Smith    Level: advanced
2417d382aafbSBarry Smith 
2418d382aafbSBarry Smith    Concepts: communicator, create
2419d382aafbSBarry Smith S*/
2420d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm;
2421d382aafbSBarry Smith 
2422d382aafbSBarry Smith struct _n_PetscSubcomm {
2423d382aafbSBarry Smith   MPI_Comm   parent;      /* parent communicator */
2424d382aafbSBarry Smith   MPI_Comm   dupparent;   /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */
2425d382aafbSBarry Smith   MPI_Comm   comm;        /* this communicator */
2426d382aafbSBarry Smith   PetscInt   n;           /* num of subcommunicators under the parent communicator */
2427d382aafbSBarry Smith   PetscInt   color;       /* color of processors belong to this communicator */
2428d382aafbSBarry Smith };
2429d382aafbSBarry Smith 
2430638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType;
2431014dd563SJed Brown PETSC_EXTERN const char *PetscSubcommTypes[];
2432638faf0bSHong Zhang 
2433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*);
2434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*);
2435014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt);
2436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType);
2437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt);
2438d382aafbSBarry Smith 
243982a7e548SBarry Smith #include <petscctable.h>
244082a7e548SBarry Smith 
24416c7e564aSBarry Smith 
24429e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */
24439e03d832SJed Brown #undef __FUNCT__
24449e03d832SJed Brown #define __FUNCT__ "User provided function"
24459e03d832SJed Brown 
2446d382aafbSBarry Smith #endif
2447