1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 24113e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 242a05e1a72SSatish Balay #include <inttypes.h> 24337354ed4SSatish Balay # if !defined(PRId64) 24437354ed4SSatish Balay # define PRId64 "ld" 24537354ed4SSatish Balay # endif 246a05e1a72SSatish Balay #endif 247fab38c73SJed Brown 24899a4b90dSDave May typedef short PetscShort; 24999a4b90dSDave May typedef char PetscChar; 25099a4b90dSDave May typedef float PetscFloat; 25199a4b90dSDave May 252d382aafbSBarry Smith /*MC 253d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2543b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 255d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 256d382aafbSBarry Smith 257d382aafbSBarry Smith Level: intermediate 258d382aafbSBarry Smith 259d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 260d382aafbSBarry Smith M*/ 26137354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 262bafee8b4SSatish Balay typedef int64_t PetscInt64; 263bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 264a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 265fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 266bafee8b4SSatish Balay typedef long long PetscInt64; 267bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 268a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 269f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 270bafee8b4SSatish Balay typedef __int64 PetscInt64; 271bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 272a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 273236ed0a3SSatish Balay #else 274bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 275236ed0a3SSatish Balay #endif 276d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 277bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 278bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 279a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 280d382aafbSBarry Smith #else 281d382aafbSBarry Smith typedef int PetscInt; 282d382aafbSBarry Smith #define MPIU_INT MPI_INT 283a05e1a72SSatish Balay #define PetscInt_FMT "d" 284d382aafbSBarry Smith #endif 285d382aafbSBarry Smith 286702bc34aSSatish Balay /*MC 287702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 288702bc34aSSatish Balay 289702bc34aSSatish Balay Level: intermediate 290702bc34aSSatish Balay 291702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 292702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 293702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 294702bc34aSSatish Balay 295c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2962981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 297702bc34aSSatish Balay 2982981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 299702bc34aSSatish Balay if you run ./configure with the option 300702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3012981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3022981ebdbSBarry Smith 3032981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 3042981ebdbSBarry Smith 3052981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 306702bc34aSSatish Balay 307702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 308702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 309702bc34aSSatish Balay 3101cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 311702bc34aSSatish Balay 312702bc34aSSatish Balay M*/ 313702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 314bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 315702bc34aSSatish Balay #else 316702bc34aSSatish Balay typedef int PetscBLASInt; 317702bc34aSSatish Balay #endif 318702bc34aSSatish Balay 31958b60935SBarry Smith /*EC 32058b60935SBarry Smith 3212981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 32258b60935SBarry Smith 32358b60935SBarry Smith Level: advanced 32458b60935SBarry Smith 32558b60935SBarry Smith .seealso: PetscObjectSetPrecision() 32658b60935SBarry Smith E*/ 32758b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 328014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 32958b60935SBarry Smith 330503cfb0cSBarry Smith /* 331503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 332503cfb0cSBarry Smith */ 333d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 334adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 335d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 336adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 337d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 338adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 339d382aafbSBarry Smith #else 340d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 341d382aafbSBarry Smith #endif 342d382aafbSBarry Smith 343d382aafbSBarry Smith /* 344d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 345d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 346d382aafbSBarry Smith */ 347014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 348d382aafbSBarry Smith 349d382aafbSBarry Smith /* 350d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 351d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 352d382aafbSBarry Smith */ 353014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 354d382aafbSBarry Smith 355d382aafbSBarry Smith /*MC 356d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 357d382aafbSBarry Smith 358d382aafbSBarry Smith Synopsis: 359aaa7dc30SBarry Smith #include <petscsys.h> 360ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 361d382aafbSBarry Smith 362eca87e8dSBarry Smith Not Collective 363eca87e8dSBarry Smith 364d382aafbSBarry Smith Input Parameters: 365d382aafbSBarry Smith . cond - condition or expression 366d382aafbSBarry Smith 367d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 368d382aafbSBarry Smith branch is unlikely. 369d382aafbSBarry Smith 370d382aafbSBarry Smith Level: advanced 371d382aafbSBarry Smith 372d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 373d382aafbSBarry Smith M*/ 374d382aafbSBarry Smith 375d382aafbSBarry Smith /*MC 376d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 377d382aafbSBarry Smith 378d382aafbSBarry Smith Synopsis: 379aaa7dc30SBarry Smith #include <petscsys.h> 380ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 381d382aafbSBarry Smith 382eca87e8dSBarry Smith Not Collective 383eca87e8dSBarry Smith 384d382aafbSBarry Smith Input Parameters: 385d382aafbSBarry Smith . cond - condition or expression 386d382aafbSBarry Smith 387d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 388d382aafbSBarry Smith branch is likely. 389d382aafbSBarry Smith 390d382aafbSBarry Smith Level: advanced 391d382aafbSBarry Smith 392d382aafbSBarry Smith .seealso: PetscUnlikely() 393d382aafbSBarry Smith M*/ 394d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 395d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 396d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 397d382aafbSBarry Smith #else 398cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 399cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 400d382aafbSBarry Smith #endif 401d382aafbSBarry Smith 402d382aafbSBarry Smith /* 403d382aafbSBarry Smith Declare extern C stuff after including external header files 404d382aafbSBarry Smith */ 405d382aafbSBarry Smith 406d382aafbSBarry Smith 407d382aafbSBarry Smith /* 408d382aafbSBarry Smith Basic PETSc constants 409d382aafbSBarry Smith */ 410d382aafbSBarry Smith 411d382aafbSBarry Smith /*E 412ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 413d382aafbSBarry Smith 414d382aafbSBarry Smith Level: beginner 415d382aafbSBarry Smith 416ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 41734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41834e82e7dSBarry Smith 4191cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 420d382aafbSBarry Smith E*/ 421ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4226a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4235a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 42470b3c8c7SBarry Smith 4258b49ba18SBarry Smith /* 4268b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4278b49ba18SBarry Smith */ 4288b49ba18SBarry Smith #include <petscmath.h> 4298b49ba18SBarry Smith 43070b3c8c7SBarry Smith /*E 43170b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 43270b3c8c7SBarry Smith 43370b3c8c7SBarry Smith Level: beginner 43470b3c8c7SBarry Smith 43570b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 43670b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 43770b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 43870b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43970b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 44070b3c8c7SBarry Smith 44170b3c8c7SBarry Smith E*/ 44270b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4436a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 444d382aafbSBarry Smith 445d382aafbSBarry Smith /*MC 446ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 447d382aafbSBarry Smith 448d382aafbSBarry Smith Level: beginner 449d382aafbSBarry Smith 450d382aafbSBarry Smith Note: Zero integer 451d382aafbSBarry Smith 452ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 453d382aafbSBarry Smith M*/ 454d382aafbSBarry Smith 455d382aafbSBarry Smith /*MC 456ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 457d382aafbSBarry Smith 458d382aafbSBarry Smith Level: beginner 459d382aafbSBarry Smith 460d382aafbSBarry Smith Note: Nonzero integer 461d382aafbSBarry Smith 462ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 463d382aafbSBarry Smith M*/ 464d382aafbSBarry Smith 465d382aafbSBarry Smith /*MC 4660298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 467d382aafbSBarry Smith 468d382aafbSBarry Smith Level: beginner 469d382aafbSBarry Smith 470d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 471d382aafbSBarry Smith some default 472d382aafbSBarry Smith 473d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 4741b266c99SBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_VEC etc 475d382aafbSBarry Smith 476d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 477d382aafbSBarry Smith 478d382aafbSBarry Smith M*/ 4793bcbec90SJed Brown #define PETSC_NULL NULL 480d382aafbSBarry Smith 481d382aafbSBarry Smith /*MC 4820298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 483d382aafbSBarry Smith 484d382aafbSBarry Smith Level: beginner 485d382aafbSBarry Smith 486d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 487d382aafbSBarry Smith some default 488d382aafbSBarry Smith 489d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 490d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 491d382aafbSBarry Smith 492d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 493d382aafbSBarry Smith 494d382aafbSBarry Smith M*/ 4950298fd71SBarry Smith #define PETSC_IGNORE NULL 496d382aafbSBarry Smith 497d382aafbSBarry Smith /*MC 498557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 499557d4da8SBarry Smith where you wish PETSc to use the default. 500557d4da8SBarry Smith 501557d4da8SBarry Smith Level: beginner 502557d4da8SBarry Smith 503557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 504557d4da8SBarry Smith 505557d4da8SBarry Smith M*/ 506557d4da8SBarry Smith #define PETSC_DECIDE -1 507557d4da8SBarry Smith 508557d4da8SBarry Smith /*MC 509d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 510d382aafbSBarry Smith where you wish PETSc to compute the required value. 511d382aafbSBarry Smith 512d382aafbSBarry Smith Level: beginner 513d382aafbSBarry Smith 514557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 515557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 516557d4da8SBarry Smith 5170298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 518d382aafbSBarry Smith 519d382aafbSBarry Smith M*/ 520d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 521d382aafbSBarry Smith 522d382aafbSBarry Smith /*MC 523557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 524557d4da8SBarry Smith where you wish PETSc to use the default. 525557d4da8SBarry Smith 526557d4da8SBarry Smith Level: beginner 527557d4da8SBarry Smith 5282d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 529557d4da8SBarry Smith 5300298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 531557d4da8SBarry Smith 532557d4da8SBarry Smith M*/ 533557d4da8SBarry Smith #define PETSC_DEFAULT -2 534557d4da8SBarry Smith 535557d4da8SBarry Smith /*MC 536d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 537d382aafbSBarry Smith all the processs that PETSc knows about. 538d382aafbSBarry Smith 539d382aafbSBarry Smith Level: beginner 540d382aafbSBarry Smith 541d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 542d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 543d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 544a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 545a990b902SBarry Smith 546a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 547a990b902SBarry Smith is called because it may not have a valid value yet. 548d382aafbSBarry Smith 549d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 550d382aafbSBarry Smith 551d382aafbSBarry Smith M*/ 552014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 553d382aafbSBarry Smith 554d382aafbSBarry Smith /*MC 555503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 556d382aafbSBarry Smith 557d382aafbSBarry Smith Level: beginner 558d382aafbSBarry Smith 559a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 560a990b902SBarry Smith 561d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 562d382aafbSBarry Smith 563d382aafbSBarry Smith M*/ 564d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 565d382aafbSBarry Smith 566d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 567014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 568014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 569014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5704cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 57182f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 572d382aafbSBarry Smith 573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 576d382aafbSBarry Smith 577d382aafbSBarry Smith /*MC 57895dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 579d382aafbSBarry Smith 580eca87e8dSBarry Smith Synopsis: 581aaa7dc30SBarry Smith #include <petscsys.h> 582eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 583eca87e8dSBarry Smith 584eca87e8dSBarry Smith Not Collective 585eca87e8dSBarry Smith 586d382aafbSBarry Smith Input Parameter: 587d382aafbSBarry Smith . m - number of bytes to allocate 588d382aafbSBarry Smith 589d382aafbSBarry Smith Output Parameter: 590d382aafbSBarry Smith . result - memory allocated 591d382aafbSBarry Smith 592d382aafbSBarry Smith Level: beginner 593d382aafbSBarry Smith 59449d7da52SJed Brown Notes: 59549d7da52SJed Brown Memory is always allocated at least double aligned 596d382aafbSBarry Smith 59749d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 598d382aafbSBarry Smith 599d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 600d382aafbSBarry Smith 601d382aafbSBarry Smith Concepts: memory allocation 602d382aafbSBarry Smith 603d382aafbSBarry Smith M*/ 60449d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 605d382aafbSBarry Smith 606d382aafbSBarry Smith /*MC 6073221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6083221ece2SMatthew G. Knepley 6093221ece2SMatthew G. Knepley Synopsis: 6103221ece2SMatthew G. Knepley #include <petscsys.h> 6113221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6123221ece2SMatthew G. Knepley 6133221ece2SMatthew G. Knepley Not Collective 6143221ece2SMatthew G. Knepley 6153221ece2SMatthew G. Knepley Input Parameters: 6163221ece2SMatthew G. Knepley + m - number of bytes to allocate 6173221ece2SMatthew G. Knepley - result - initial memory allocated 6183221ece2SMatthew G. Knepley 6193221ece2SMatthew G. Knepley Output Parameter: 6203221ece2SMatthew G. Knepley . result - new memory allocated 6213221ece2SMatthew G. Knepley 6223221ece2SMatthew G. Knepley Level: developer 6233221ece2SMatthew G. Knepley 6243221ece2SMatthew G. Knepley Notes: 6253221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6263221ece2SMatthew G. Knepley 6273221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6283221ece2SMatthew G. Knepley 6293221ece2SMatthew G. Knepley Concepts: memory allocation 6303221ece2SMatthew G. Knepley 6313221ece2SMatthew G. Knepley M*/ 6323221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6333221ece2SMatthew G. Knepley 6343221ece2SMatthew G. Knepley /*MC 635503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 636d382aafbSBarry Smith 637d382aafbSBarry Smith Synopsis: 638aaa7dc30SBarry Smith #include <petscsys.h> 639d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 640d382aafbSBarry Smith 641eca87e8dSBarry Smith Not Collective 642eca87e8dSBarry Smith 643eca87e8dSBarry Smith Input Parameters: 644eca87e8dSBarry Smith . addr - address to align (any pointer type) 645eca87e8dSBarry Smith 646d382aafbSBarry Smith Level: developer 647d382aafbSBarry Smith 648d382aafbSBarry Smith .seealso: PetscMallocAlign() 649d382aafbSBarry Smith 650d382aafbSBarry Smith Concepts: memory allocation 651d382aafbSBarry Smith M*/ 652d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 653d382aafbSBarry Smith 654d382aafbSBarry Smith /*MC 655785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 656d382aafbSBarry Smith 657eca87e8dSBarry Smith Synopsis: 658aaa7dc30SBarry Smith #include <petscsys.h> 659785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 660785e854fSJed Brown 661785e854fSJed Brown Not Collective 662785e854fSJed Brown 663785e854fSJed Brown Input Parameter: 664785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 665785e854fSJed Brown 666785e854fSJed Brown Output Parameter: 667785e854fSJed Brown . r1 - memory allocated in first chunk 668785e854fSJed Brown 669785e854fSJed Brown Level: developer 670785e854fSJed Brown 6711795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 672785e854fSJed Brown 673785e854fSJed Brown Concepts: memory allocation 674785e854fSJed Brown 675785e854fSJed Brown M*/ 676f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 677785e854fSJed Brown 678785e854fSJed Brown /*MC 6791795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6801795a4d1SJed Brown 6811795a4d1SJed Brown Synopsis: 682aaa7dc30SBarry Smith #include <petscsys.h> 6831795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6841795a4d1SJed Brown 6851795a4d1SJed Brown Not Collective 6861795a4d1SJed Brown 6871795a4d1SJed Brown Input Parameter: 6881795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6891795a4d1SJed Brown 6901795a4d1SJed Brown Output Parameter: 6911795a4d1SJed Brown . r1 - memory allocated in first chunk 6921795a4d1SJed Brown 6931795a4d1SJed Brown Level: developer 6941795a4d1SJed Brown 6951795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6961795a4d1SJed Brown 6971795a4d1SJed Brown Concepts: memory allocation 6981795a4d1SJed Brown 6991795a4d1SJed Brown M*/ 7001795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 7011795a4d1SJed Brown 7021795a4d1SJed Brown /*MC 703dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 704d382aafbSBarry Smith 705eca87e8dSBarry Smith Synopsis: 706aaa7dc30SBarry Smith #include <petscsys.h> 707dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 708eca87e8dSBarry Smith 709eca87e8dSBarry Smith Not Collective 710eca87e8dSBarry Smith 711d382aafbSBarry Smith Input Parameter: 712d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 713dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 714d382aafbSBarry Smith 715d382aafbSBarry Smith Output Parameter: 716d382aafbSBarry Smith + r1 - memory allocated in first chunk 717d382aafbSBarry Smith - r2 - memory allocated in second chunk 718d382aafbSBarry Smith 719d382aafbSBarry Smith Level: developer 720d382aafbSBarry Smith 7211795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 722d382aafbSBarry Smith 723d382aafbSBarry Smith Concepts: memory allocation 724d382aafbSBarry Smith 725d382aafbSBarry Smith M*/ 72620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7271d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 728d382aafbSBarry Smith #else 729ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 730ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 7313589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 732d382aafbSBarry Smith #endif 733d382aafbSBarry Smith 734d382aafbSBarry Smith /*MC 7351795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 736d382aafbSBarry Smith 737eca87e8dSBarry Smith Synopsis: 738aaa7dc30SBarry Smith #include <petscsys.h> 7391795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 740eca87e8dSBarry Smith 741eca87e8dSBarry Smith Not Collective 742eca87e8dSBarry Smith 743d382aafbSBarry Smith Input Parameter: 744d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7451795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7461795a4d1SJed Brown 7471795a4d1SJed Brown Output Parameter: 7481795a4d1SJed Brown + r1 - memory allocated in first chunk 7491795a4d1SJed Brown - r2 - memory allocated in second chunk 7501795a4d1SJed Brown 7511795a4d1SJed Brown Level: developer 7521795a4d1SJed Brown 7531795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7541795a4d1SJed Brown 7551795a4d1SJed Brown Concepts: memory allocation 7561795a4d1SJed Brown M*/ 7571795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7581795a4d1SJed Brown 7591795a4d1SJed Brown /*MC 760dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 761d382aafbSBarry Smith 762d382aafbSBarry Smith Synopsis: 763aaa7dc30SBarry Smith #include <petscsys.h> 764dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 765d382aafbSBarry Smith 766d382aafbSBarry Smith Not Collective 767d382aafbSBarry Smith 768d382aafbSBarry Smith Input Parameter: 769d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 770d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 771dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 772d382aafbSBarry Smith 773d382aafbSBarry Smith Output Parameter: 774d382aafbSBarry Smith + r1 - memory allocated in first chunk 775d382aafbSBarry Smith . r2 - memory allocated in second chunk 776d382aafbSBarry Smith - r3 - memory allocated in third chunk 777d382aafbSBarry Smith 778d382aafbSBarry Smith Level: developer 779d382aafbSBarry Smith 7801795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 781d382aafbSBarry Smith 782d382aafbSBarry Smith Concepts: memory allocation 783d382aafbSBarry Smith 784d382aafbSBarry Smith M*/ 78520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7861d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 787d382aafbSBarry Smith #else 788ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 789278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7903589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 791d382aafbSBarry Smith #endif 792d382aafbSBarry Smith 793d382aafbSBarry Smith /*MC 7941795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 795d382aafbSBarry Smith 796eca87e8dSBarry Smith Synopsis: 797aaa7dc30SBarry Smith #include <petscsys.h> 7981795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 799eca87e8dSBarry Smith 800eca87e8dSBarry Smith Not Collective 801eca87e8dSBarry Smith 802d382aafbSBarry Smith Input Parameter: 803d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 804d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8051795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8061795a4d1SJed Brown 8071795a4d1SJed Brown Output Parameter: 8081795a4d1SJed Brown + r1 - memory allocated in first chunk 8091795a4d1SJed Brown . r2 - memory allocated in second chunk 8101795a4d1SJed Brown - r3 - memory allocated in third chunk 8111795a4d1SJed Brown 8121795a4d1SJed Brown Level: developer 8131795a4d1SJed Brown 8141795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8151795a4d1SJed Brown 8161795a4d1SJed Brown Concepts: memory allocation 8171795a4d1SJed Brown M*/ 8181795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 8191795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 8201795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 8211795a4d1SJed Brown 8221795a4d1SJed Brown /*MC 823dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 824d382aafbSBarry Smith 825d382aafbSBarry Smith Synopsis: 826aaa7dc30SBarry Smith #include <petscsys.h> 827dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 828d382aafbSBarry Smith 829d382aafbSBarry Smith Not Collective 830d382aafbSBarry Smith 831d382aafbSBarry Smith Input Parameter: 832d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 833d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 834d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 835dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 836d382aafbSBarry Smith 837d382aafbSBarry Smith Output Parameter: 838d382aafbSBarry Smith + r1 - memory allocated in first chunk 839d382aafbSBarry Smith . r2 - memory allocated in second chunk 840d382aafbSBarry Smith . r3 - memory allocated in third chunk 841d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 842d382aafbSBarry Smith 843d382aafbSBarry Smith Level: developer 844d382aafbSBarry Smith 8451795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 846d382aafbSBarry Smith 847d382aafbSBarry Smith Concepts: memory allocation 848d382aafbSBarry Smith 849d382aafbSBarry Smith M*/ 85020a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8511d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 852d382aafbSBarry Smith #else 853dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 854ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 855278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8563589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 857d382aafbSBarry Smith #endif 858d382aafbSBarry Smith 859d382aafbSBarry Smith /*MC 8601795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 861d382aafbSBarry Smith 862eca87e8dSBarry Smith Synopsis: 863aaa7dc30SBarry Smith #include <petscsys.h> 8641795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 865eca87e8dSBarry Smith 866eca87e8dSBarry Smith Not Collective 867eca87e8dSBarry Smith 868d382aafbSBarry Smith Input Parameter: 869d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 870d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 871d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8721795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8731795a4d1SJed Brown 8741795a4d1SJed Brown Output Parameter: 8751795a4d1SJed Brown + r1 - memory allocated in first chunk 8761795a4d1SJed Brown . r2 - memory allocated in second chunk 8771795a4d1SJed Brown . r3 - memory allocated in third chunk 8781795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8791795a4d1SJed Brown 8801795a4d1SJed Brown Level: developer 8811795a4d1SJed Brown 8821795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8831795a4d1SJed Brown 8841795a4d1SJed Brown Concepts: memory allocation 8851795a4d1SJed Brown 8861795a4d1SJed Brown M*/ 8871795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8881795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8891795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8901795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8911795a4d1SJed Brown 8921795a4d1SJed Brown /*MC 893dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 894d382aafbSBarry Smith 895d382aafbSBarry Smith Synopsis: 896aaa7dc30SBarry Smith #include <petscsys.h> 897dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 898d382aafbSBarry Smith 899d382aafbSBarry Smith Not Collective 900d382aafbSBarry Smith 901d382aafbSBarry Smith Input Parameter: 902d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 903d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 904d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 905d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 906dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 907d382aafbSBarry Smith 908d382aafbSBarry Smith Output Parameter: 909d382aafbSBarry Smith + r1 - memory allocated in first chunk 910d382aafbSBarry Smith . r2 - memory allocated in second chunk 911d382aafbSBarry Smith . r3 - memory allocated in third chunk 912d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 913d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 914d382aafbSBarry Smith 915d382aafbSBarry Smith Level: developer 916d382aafbSBarry Smith 9171795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 918d382aafbSBarry Smith 919d382aafbSBarry Smith Concepts: memory allocation 920d382aafbSBarry Smith 921d382aafbSBarry Smith M*/ 92220a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9231d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 924d382aafbSBarry Smith #else 925dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 926ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 927278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 9283589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 929d382aafbSBarry Smith #endif 930d382aafbSBarry Smith 931d382aafbSBarry Smith /*MC 9321795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 933d382aafbSBarry Smith 934eca87e8dSBarry Smith Synopsis: 935aaa7dc30SBarry Smith #include <petscsys.h> 9361795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 937eca87e8dSBarry Smith 938eca87e8dSBarry Smith Not Collective 939eca87e8dSBarry Smith 940d382aafbSBarry Smith Input Parameter: 941d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 942d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 943d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 944d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9451795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9461795a4d1SJed Brown 9471795a4d1SJed Brown Output Parameter: 9481795a4d1SJed Brown + r1 - memory allocated in first chunk 9491795a4d1SJed Brown . r2 - memory allocated in second chunk 9501795a4d1SJed Brown . r3 - memory allocated in third chunk 9511795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9521795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9531795a4d1SJed Brown 9541795a4d1SJed Brown Level: developer 9551795a4d1SJed Brown 9561795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9571795a4d1SJed Brown 9581795a4d1SJed Brown Concepts: memory allocation 9591795a4d1SJed Brown 9601795a4d1SJed Brown M*/ 9611795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9621795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9631795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9641795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 965d382aafbSBarry Smith 966d382aafbSBarry Smith /*MC 967dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 968d382aafbSBarry Smith 969d382aafbSBarry Smith Synopsis: 970aaa7dc30SBarry Smith #include <petscsys.h> 971dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 972d382aafbSBarry Smith 973d382aafbSBarry Smith Not Collective 974d382aafbSBarry Smith 975d382aafbSBarry Smith Input Parameter: 976d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 977d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 978d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 979d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 980d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 981dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 982d382aafbSBarry Smith 983d382aafbSBarry Smith Output Parameter: 984d382aafbSBarry Smith + r1 - memory allocated in first chunk 985d382aafbSBarry Smith . r2 - memory allocated in second chunk 986d382aafbSBarry Smith . r3 - memory allocated in third chunk 987d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 988d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 989d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 990d382aafbSBarry Smith 991d382aafbSBarry Smith Level: developer 992d382aafbSBarry Smith 9931795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 994d382aafbSBarry Smith 995d382aafbSBarry Smith Concepts: memory allocation 996d382aafbSBarry Smith 997d382aafbSBarry Smith M*/ 99820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9991d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 1000d382aafbSBarry Smith #else 1001dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 1002ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 1003278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 10043589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 1005d382aafbSBarry Smith #endif 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith /*MC 10081795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1009d382aafbSBarry Smith 1010eca87e8dSBarry Smith Synopsis: 1011aaa7dc30SBarry Smith #include <petscsys.h> 10121795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1013eca87e8dSBarry Smith 1014eca87e8dSBarry Smith Not Collective 1015eca87e8dSBarry Smith 1016d382aafbSBarry Smith Input Parameter: 1017d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1018d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1019d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1020d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1021d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10221795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10231795a4d1SJed Brown 10241795a4d1SJed Brown Output Parameter: 10251795a4d1SJed Brown + r1 - memory allocated in first chunk 10261795a4d1SJed Brown . r2 - memory allocated in second chunk 10271795a4d1SJed Brown . r3 - memory allocated in third chunk 10281795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10291795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10301795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10311795a4d1SJed Brown 10321795a4d1SJed Brown Level: developer 10331795a4d1SJed Brown 10341795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10351795a4d1SJed Brown 10361795a4d1SJed Brown Concepts: memory allocation 10371795a4d1SJed Brown M*/ 10381795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10391795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10401795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10411795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10421795a4d1SJed Brown 10431795a4d1SJed Brown /*MC 1044dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith Synopsis: 1047aaa7dc30SBarry Smith #include <petscsys.h> 1048dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1049d382aafbSBarry Smith 1050d382aafbSBarry Smith Not Collective 1051d382aafbSBarry Smith 1052d382aafbSBarry Smith Input Parameter: 1053d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1054d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1055d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1056d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1057d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1058d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1059dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1060d382aafbSBarry Smith 1061d382aafbSBarry Smith Output Parameter: 1062d382aafbSBarry Smith + r1 - memory allocated in first chunk 1063d382aafbSBarry Smith . r2 - memory allocated in second chunk 1064d382aafbSBarry Smith . r3 - memory allocated in third chunk 1065d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1066d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1067d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1068eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1069d382aafbSBarry Smith 1070d382aafbSBarry Smith Level: developer 1071d382aafbSBarry Smith 10721795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1073d382aafbSBarry Smith 1074d382aafbSBarry Smith Concepts: memory allocation 1075d382aafbSBarry Smith 1076d382aafbSBarry Smith M*/ 107720a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10781d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1079d382aafbSBarry Smith #else 1080dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1081ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1082278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10833589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1084d382aafbSBarry Smith #endif 1085d382aafbSBarry Smith 1086d382aafbSBarry Smith /*MC 10871795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10881795a4d1SJed Brown 10891795a4d1SJed Brown Synopsis: 1090aaa7dc30SBarry Smith #include <petscsys.h> 10911795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10921795a4d1SJed Brown 10931795a4d1SJed Brown Not Collective 10941795a4d1SJed Brown 10951795a4d1SJed Brown Input Parameter: 10961795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10971795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10981795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10991795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 11001795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 11011795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 11021795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 11031795a4d1SJed Brown 11041795a4d1SJed Brown Output Parameter: 11051795a4d1SJed Brown + r1 - memory allocated in first chunk 11061795a4d1SJed Brown . r2 - memory allocated in second chunk 11071795a4d1SJed Brown . r3 - memory allocated in third chunk 11081795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11091795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11101795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11111795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11121795a4d1SJed Brown 11131795a4d1SJed Brown Level: developer 11141795a4d1SJed Brown 11151795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11161795a4d1SJed Brown 11171795a4d1SJed Brown Concepts: memory allocation 11181795a4d1SJed Brown M*/ 11191795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11207ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11211795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 11221795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 11237ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 11241795a4d1SJed Brown 11251795a4d1SJed Brown /*MC 1126503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1127d382aafbSBarry Smith 1128eca87e8dSBarry Smith Synopsis: 1129aaa7dc30SBarry Smith #include <petscsys.h> 1130b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1131eca87e8dSBarry Smith 1132eca87e8dSBarry Smith Not Collective 1133eca87e8dSBarry Smith 1134d382aafbSBarry Smith Output Parameter: 1135b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith Level: beginner 1138d382aafbSBarry Smith 1139ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith Concepts: memory allocation 1142d382aafbSBarry Smith 1143d382aafbSBarry Smith M*/ 1144b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1145ad0619ddSBarry Smith 1146ad0619ddSBarry Smith /*MC 1147b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1148ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1149ad0619ddSBarry Smith 1150ad0619ddSBarry Smith Synopsis: 1151aaa7dc30SBarry Smith #include <petscsys.h> 1152b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1153ad0619ddSBarry Smith 1154ad0619ddSBarry Smith Not Collective 1155ad0619ddSBarry Smith 1156ad0619ddSBarry Smith Input Parameter: 1157b00a9115SJed Brown . obj - object memory is logged to 1158ad0619ddSBarry Smith 1159ad0619ddSBarry Smith Output Parameter: 1160b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1161ad0619ddSBarry Smith 1162ad0619ddSBarry Smith Level: developer 1163ad0619ddSBarry Smith 1164ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1165ad0619ddSBarry Smith 1166ad0619ddSBarry Smith Concepts: memory allocation 1167ad0619ddSBarry Smith 1168ad0619ddSBarry Smith M*/ 1169d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1170d382aafbSBarry Smith 1171d382aafbSBarry Smith /*MC 1172d382aafbSBarry Smith PetscFree - Frees memory 1173d382aafbSBarry Smith 1174eca87e8dSBarry Smith Synopsis: 1175aaa7dc30SBarry Smith #include <petscsys.h> 1176eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1177eca87e8dSBarry Smith 1178eca87e8dSBarry Smith Not Collective 1179eca87e8dSBarry Smith 1180d382aafbSBarry Smith Input Parameter: 1181d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1182d382aafbSBarry Smith 1183d382aafbSBarry Smith Level: beginner 1184d382aafbSBarry Smith 118549d7da52SJed Brown Notes: 118649d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 118749d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1188d382aafbSBarry Smith 1189d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1190d382aafbSBarry Smith 1191d382aafbSBarry Smith Concepts: memory allocation 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith M*/ 119449d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1195d382aafbSBarry Smith 1196d382aafbSBarry Smith /*MC 1197d382aafbSBarry Smith PetscFreeVoid - Frees memory 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith Synopsis: 1200aaa7dc30SBarry Smith #include <petscsys.h> 1201d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1202d382aafbSBarry Smith 1203eca87e8dSBarry Smith Not Collective 1204eca87e8dSBarry Smith 1205eca87e8dSBarry Smith Input Parameter: 1206eca87e8dSBarry Smith . memory - memory to free 1207eca87e8dSBarry Smith 1208d382aafbSBarry Smith Level: beginner 1209d382aafbSBarry Smith 1210d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith Concepts: memory allocation 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith M*/ 1217efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1218d382aafbSBarry Smith 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith /*MC 1221d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1222d382aafbSBarry Smith 1223eca87e8dSBarry Smith Synopsis: 1224aaa7dc30SBarry Smith #include <petscsys.h> 1225eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1226eca87e8dSBarry Smith 1227eca87e8dSBarry Smith Not Collective 1228eca87e8dSBarry Smith 1229d382aafbSBarry Smith Input Parameter: 1230d382aafbSBarry Smith + memory1 - memory to free 1231d382aafbSBarry Smith - memory2 - 2nd memory to free 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith Level: developer 1234d382aafbSBarry Smith 1235d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1236d382aafbSBarry Smith 1237d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1238d382aafbSBarry Smith 1239d382aafbSBarry Smith Concepts: memory allocation 1240d382aafbSBarry Smith 1241d382aafbSBarry Smith M*/ 1242b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1243d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1244d382aafbSBarry Smith #else 1245e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1246d382aafbSBarry Smith #endif 1247d382aafbSBarry Smith 1248d382aafbSBarry Smith /*MC 1249d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1250d382aafbSBarry Smith 1251eca87e8dSBarry Smith Synopsis: 1252aaa7dc30SBarry Smith #include <petscsys.h> 1253eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1254eca87e8dSBarry Smith 1255eca87e8dSBarry Smith Not Collective 1256eca87e8dSBarry Smith 1257d382aafbSBarry Smith Input Parameter: 1258d382aafbSBarry Smith + memory1 - memory to free 1259d382aafbSBarry Smith . memory2 - 2nd memory to free 1260d382aafbSBarry Smith - memory3 - 3rd memory to free 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith Level: developer 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1267d382aafbSBarry Smith 1268d382aafbSBarry Smith Concepts: memory allocation 1269d382aafbSBarry Smith 1270d382aafbSBarry Smith M*/ 1271b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1272d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1273d382aafbSBarry Smith #else 1274e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1275d382aafbSBarry Smith #endif 1276d382aafbSBarry Smith 1277d382aafbSBarry Smith /*MC 1278d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1279d382aafbSBarry Smith 1280eca87e8dSBarry Smith Synopsis: 1281aaa7dc30SBarry Smith #include <petscsys.h> 1282eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1283eca87e8dSBarry Smith 1284eca87e8dSBarry Smith Not Collective 1285eca87e8dSBarry Smith 1286d382aafbSBarry Smith Input Parameter: 1287d382aafbSBarry Smith + m1 - memory to free 1288d382aafbSBarry Smith . m2 - 2nd memory to free 1289d382aafbSBarry Smith . m3 - 3rd memory to free 1290d382aafbSBarry Smith - m4 - 4th memory to free 1291d382aafbSBarry Smith 1292d382aafbSBarry Smith Level: developer 1293d382aafbSBarry Smith 1294d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1297d382aafbSBarry Smith 1298d382aafbSBarry Smith Concepts: memory allocation 1299d382aafbSBarry Smith 1300d382aafbSBarry Smith M*/ 1301b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1302d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1303d382aafbSBarry Smith #else 1304e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1305d382aafbSBarry Smith #endif 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith /*MC 1308d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1309d382aafbSBarry Smith 1310eca87e8dSBarry Smith Synopsis: 1311aaa7dc30SBarry Smith #include <petscsys.h> 1312eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1313eca87e8dSBarry Smith 1314eca87e8dSBarry Smith Not Collective 1315eca87e8dSBarry Smith 1316d382aafbSBarry Smith Input Parameter: 1317d382aafbSBarry Smith + m1 - memory to free 1318d382aafbSBarry Smith . m2 - 2nd memory to free 1319d382aafbSBarry Smith . m3 - 3rd memory to free 1320d382aafbSBarry Smith . m4 - 4th memory to free 1321d382aafbSBarry Smith - m5 - 5th memory to free 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith Level: developer 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1326d382aafbSBarry Smith 1327d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1328d382aafbSBarry Smith 1329d382aafbSBarry Smith Concepts: memory allocation 1330d382aafbSBarry Smith 1331d382aafbSBarry Smith M*/ 1332b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1333d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1334d382aafbSBarry Smith #else 1335e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1336e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1337d382aafbSBarry Smith #endif 1338d382aafbSBarry Smith 1339d382aafbSBarry Smith 1340d382aafbSBarry Smith /*MC 1341d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1342d382aafbSBarry Smith 1343eca87e8dSBarry Smith Synopsis: 1344aaa7dc30SBarry Smith #include <petscsys.h> 1345eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1346eca87e8dSBarry Smith 1347eca87e8dSBarry Smith Not Collective 1348eca87e8dSBarry Smith 1349d382aafbSBarry Smith Input Parameter: 1350d382aafbSBarry Smith + m1 - memory to free 1351d382aafbSBarry Smith . m2 - 2nd memory to free 1352d382aafbSBarry Smith . m3 - 3rd memory to free 1353d382aafbSBarry Smith . m4 - 4th memory to free 1354d382aafbSBarry Smith . m5 - 5th memory to free 1355d382aafbSBarry Smith - m6 - 6th memory to free 1356d382aafbSBarry Smith 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith Level: developer 1359d382aafbSBarry Smith 1360d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1361d382aafbSBarry Smith 1362d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith Concepts: memory allocation 1365d382aafbSBarry Smith 1366d382aafbSBarry Smith M*/ 1367b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1368d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1369d382aafbSBarry Smith #else 1370e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1371e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1372e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1373d382aafbSBarry Smith #endif 1374d382aafbSBarry Smith 1375d382aafbSBarry Smith /*MC 1376d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1377d382aafbSBarry Smith 1378eca87e8dSBarry Smith Synopsis: 1379aaa7dc30SBarry Smith #include <petscsys.h> 1380eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1381eca87e8dSBarry Smith 1382eca87e8dSBarry Smith Not Collective 1383eca87e8dSBarry Smith 1384d382aafbSBarry Smith Input Parameter: 1385d382aafbSBarry Smith + m1 - memory to free 1386d382aafbSBarry Smith . m2 - 2nd memory to free 1387d382aafbSBarry Smith . m3 - 3rd memory to free 1388d382aafbSBarry Smith . m4 - 4th memory to free 1389d382aafbSBarry Smith . m5 - 5th memory to free 1390d382aafbSBarry Smith . m6 - 6th memory to free 1391d382aafbSBarry Smith - m7 - 7th memory to free 1392d382aafbSBarry Smith 1393d382aafbSBarry Smith 1394d382aafbSBarry Smith Level: developer 1395d382aafbSBarry Smith 1396d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1397d382aafbSBarry Smith 1398d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1399d382aafbSBarry Smith PetscMalloc7() 1400d382aafbSBarry Smith 1401d382aafbSBarry Smith Concepts: memory allocation 1402d382aafbSBarry Smith 1403d382aafbSBarry Smith M*/ 1404b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1405d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1406d382aafbSBarry Smith #else 1407e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1408e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 140906c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1410e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1411d382aafbSBarry Smith #endif 1412d382aafbSBarry Smith 1413efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1414efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 14153221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1416efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1418d382aafbSBarry Smith 1419d382aafbSBarry Smith /* 1420a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1421a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1422a5057860SBarry Smith timing etc. 1423a5057860SBarry Smith */ 1424a5057860SBarry Smith typedef double PetscLogDouble; 1425a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1426a5057860SBarry Smith 1427a5057860SBarry Smith /* 142866d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1429d382aafbSBarry Smith */ 1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 14350acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1436efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1438574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1440d382aafbSBarry Smith 1441d382aafbSBarry Smith /*E 1442d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1443d382aafbSBarry Smith 1444d382aafbSBarry Smith Level: beginner 1445d382aafbSBarry Smith 1446d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1447d382aafbSBarry Smith 1448d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1449d382aafbSBarry Smith PetscDataTypeGetSize() 1450d382aafbSBarry Smith 1451d382aafbSBarry Smith E*/ 1452d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 145399a4b90dSDave May PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12, PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14546a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1455d382aafbSBarry Smith 1456d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1457d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1458d382aafbSBarry Smith #else 1459ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1460d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 146159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 146259a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1463d382aafbSBarry Smith #else 1464d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1465d382aafbSBarry Smith #endif 1466d382aafbSBarry Smith #endif 1467ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1468d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 146959a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 147059a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1471d382aafbSBarry Smith #else 1472d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1473d382aafbSBarry Smith #endif 1474d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1475d382aafbSBarry Smith 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14798e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1480d382aafbSBarry Smith 1481d382aafbSBarry Smith /* 1482d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1483d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1484d382aafbSBarry Smith functionality and/or error checking. 1485d382aafbSBarry Smith */ 1486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1487014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1488014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1489014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1490d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1493014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1497014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1499014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 15022f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1506014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 15072c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1508014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1509014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 151047340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 15116fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 15126991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 15136991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1514014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1515d382aafbSBarry Smith 1516573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1517573b0fb4SBarry Smith 1518d382aafbSBarry Smith /*S 1519d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1520d382aafbSBarry Smith 1521d382aafbSBarry Smith Level: intermediate 1522d382aafbSBarry Smith 1523d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1524d382aafbSBarry Smith S*/ 1525d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1526d382aafbSBarry Smith 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1530d382aafbSBarry Smith 1531a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1532a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1533a53986e1SJed Brown 1534d382aafbSBarry Smith /* 1535d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1536d382aafbSBarry Smith */ 1537367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 15387c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1539014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15402414b3c7SJed Brown #else 15412414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15422414b3c7SJed Brown #endif 15432414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1544014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1545014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1546d9822059SBarry Smith #else 1547d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1548d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1549d9822059SBarry Smith #endif 1550014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1551d382aafbSBarry Smith 1552014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1554eb3f98d2SBarry Smith 1555d382aafbSBarry Smith /*S 1556d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1557d382aafbSBarry Smith 1558d382aafbSBarry Smith Level: beginner 1559d382aafbSBarry Smith 15602981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1561d382aafbSBarry Smith 15622b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1563d382aafbSBarry Smith S*/ 1564d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1565d382aafbSBarry Smith 1566270bf2e7SJed Brown /*MC 1567127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1568127c8a3bSJed Brown 1569127c8a3bSJed Brown Level: developer 1570127c8a3bSJed Brown 1571127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1572127c8a3bSJed Brown 1573127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1574127c8a3bSJed Brown M*/ 157506e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 157606e41213SSatish Balay typedef int PetscObjectId; 157706e41213SSatish Balay #else 1578bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 157906e41213SSatish Balay #endif 1580127c8a3bSJed Brown 1581127c8a3bSJed Brown /*MC 1582270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1583270bf2e7SJed Brown 1584270bf2e7SJed Brown Level: developer 1585270bf2e7SJed Brown 1586270bf2e7SJed Brown Notes: 1587270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1588270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1589270bf2e7SJed Brown 15908dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1591270bf2e7SJed Brown M*/ 159206e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 159306e41213SSatish Balay typedef int PetscObjectState; 159406e41213SSatish Balay #else 1595bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 159606e41213SSatish Balay #endif 1597270bf2e7SJed Brown 1598d382aafbSBarry Smith /*S 1599140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1600d382aafbSBarry Smith by string name 1601d382aafbSBarry Smith 1602d382aafbSBarry Smith Level: advanced 1603d382aafbSBarry Smith 1604140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1605d382aafbSBarry Smith S*/ 1606140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1607d382aafbSBarry Smith 1608d382aafbSBarry Smith /*E 1609d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1610d382aafbSBarry Smith 1611d382aafbSBarry Smith Level: beginner 1612d382aafbSBarry Smith 16131cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 16141cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 16151cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 16161cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 16171cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1618d382aafbSBarry Smith 1619d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1620d382aafbSBarry Smith E*/ 1621d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1622d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1623d6a4318aSJed Brown 1624639ff905SBarry Smith /* 1625639ff905SBarry Smith Defines PETSc error handling. 1626639ff905SBarry Smith */ 1627639ff905SBarry Smith #include <petscerror.h> 1628d382aafbSBarry Smith 16290700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1630014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1631014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1633d382aafbSBarry Smith 1634d382aafbSBarry Smith /* 1635d382aafbSBarry Smith Routines that get memory usage information from the OS 1636d382aafbSBarry Smith */ 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1640b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1641d382aafbSBarry Smith 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1644d382aafbSBarry Smith 1645d382aafbSBarry Smith /* 1646d382aafbSBarry Smith Initialization of PETSc 1647d382aafbSBarry Smith */ 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1658d382aafbSBarry Smith 1659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1660607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1661d382aafbSBarry Smith 1662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1666d382aafbSBarry Smith 1667d382aafbSBarry Smith /* 1668d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16692981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1670d382aafbSBarry Smith */ 1671638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1672638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1673638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1674d382aafbSBarry Smith 1675d382aafbSBarry Smith /* 1676d382aafbSBarry Smith Functions that can act on any PETSc object. 1677d382aafbSBarry Smith */ 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1697bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1698bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1699014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 17010eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 17020eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1704d382aafbSBarry Smith 1705665c2dedSJed Brown #include <petscviewertypes.h> 1706639ff905SBarry Smith #include <petscoptions.h> 1707639ff905SBarry Smith 17080633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 17090633abcbSJed Brown 1710639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1711c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1712dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1713639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 17140005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 17150005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1723685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1724014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1725014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1726014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1727014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1728014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1729d382aafbSBarry Smith 1730e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 17317aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1732e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1733e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1734e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1735e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1736e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1737e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1738e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1739e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1740e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 174115681b3cSBarry Smith 1742ec7429eaSBarry Smith #else 17437aab2a10SBarry Smith #define PetscSAWsBlock() 0 1744e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1745e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1746e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1747e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1748e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1749e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1750e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1751e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1752e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 175315681b3cSBarry Smith 1754ec7429eaSBarry Smith #endif 1755b90c6cbeSBarry Smith 17567d5d4d99SBarry Smith typedef void* PetscDLHandle; 1757e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 175882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 175982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 176082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17617d5d4d99SBarry Smith 17625fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1763a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17645fe58b6fSBarry Smith #endif 17657eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1766a64a8e02SBarry Smith 1767d382aafbSBarry Smith /*S 1768140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1769d382aafbSBarry Smith 17701d0fab5eSBarry Smith Level: developer 1771d382aafbSBarry Smith 17721d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17731d0fab5eSBarry Smith 1774140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1775d382aafbSBarry Smith S*/ 1776140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1777d382aafbSBarry Smith 1778140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1779140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1780140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1781140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1782140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1783140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1784d382aafbSBarry Smith 1785d382aafbSBarry Smith /* 1786503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1787d382aafbSBarry Smith link libraries that will be loaded as needed. 1788d382aafbSBarry Smith */ 1789a240a19fSJed Brown 1790a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1791a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1792140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17931c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17941c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1795140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1796140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1797140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1798140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1799d382aafbSBarry Smith 1800d382aafbSBarry Smith /*S 1801d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1802d382aafbSBarry Smith 1803d382aafbSBarry Smith Level: advanced 1804d382aafbSBarry Smith 1805d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1806d382aafbSBarry Smith S*/ 1807d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1808014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1816d382aafbSBarry Smith 1817d382aafbSBarry Smith /* 1818d382aafbSBarry Smith Useful utility routines 1819d382aafbSBarry Smith */ 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1826d382aafbSBarry Smith 1827503cfb0cSBarry Smith /* 1828ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1829503cfb0cSBarry Smith 1830503cfb0cSBarry Smith Notes: This is useful in cases like 1831503cfb0cSBarry Smith $ int *a; 1832ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 18331cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1834503cfb0cSBarry Smith */ 1835d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1836503cfb0cSBarry Smith 1837d382aafbSBarry Smith /*MC 1838d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1839d382aafbSBarry Smith 1840d382aafbSBarry Smith Synopsis: 1841aaa7dc30SBarry Smith #include <petscsys.h> 1842d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1843d382aafbSBarry Smith 1844eca87e8dSBarry Smith Not Collective 1845eca87e8dSBarry Smith 1846d382aafbSBarry Smith Input Parameters: 1847d382aafbSBarry Smith . format - the usual printf() format string 1848d382aafbSBarry Smith 1849d382aafbSBarry Smith Level: developer 1850d382aafbSBarry Smith 1851d382aafbSBarry Smith Fortran Note: 1852d382aafbSBarry Smith This routine is not supported in Fortran. 1853d382aafbSBarry Smith 1854d382aafbSBarry Smith Concepts: help messages^printing 1855d382aafbSBarry Smith Concepts: printing^help messages 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1858d382aafbSBarry Smith M*/ 1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1860d382aafbSBarry Smith 1861fcfd50ebSBarry Smith /* 1862fcfd50ebSBarry Smith Defines PETSc profiling. 1863fcfd50ebSBarry Smith */ 18642c8e378dSBarry Smith #include <petsclog.h> 1865fcfd50ebSBarry Smith 1866fcfd50ebSBarry Smith /* 1867fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1868fcfd50ebSBarry Smith */ 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1870014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1871014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1872014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1873014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1874014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1875014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1876fcfd50ebSBarry Smith 1877014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1880d382aafbSBarry Smith 1881d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1882014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 188396a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 188474ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1885d382aafbSBarry Smith #endif 1886d382aafbSBarry Smith 1887014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1888014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18890ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1890014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1891014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1892014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1893014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1894d382aafbSBarry Smith 1895014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1896d382aafbSBarry Smith 1897d382aafbSBarry Smith /*S 1898d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1899d382aafbSBarry Smith 1900d382aafbSBarry Smith Level: advanced 1901d382aafbSBarry Smith 1902d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1903d382aafbSBarry Smith S*/ 1904014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1905d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1906014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1907014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1908014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1909014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1910014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith /* 1913d382aafbSBarry Smith For use in debuggers 1914d382aafbSBarry Smith */ 1915014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1916014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1917014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1918014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1919014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1920d382aafbSBarry Smith 1921a663daf8SBarry Smith #include <stddef.h> 1922a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1923d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1924d382aafbSBarry Smith #include <stdlib.h> 1925d382aafbSBarry Smith #endif 19266c7e564aSBarry Smith 19274a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1928d382aafbSBarry Smith #include <xmmintrin.h> 1929d382aafbSBarry Smith #endif 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith /*@C 1932d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1933d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1934d382aafbSBarry Smith PetscMemmove() in that case. 1935d382aafbSBarry Smith 1936d382aafbSBarry Smith Not Collective 1937d382aafbSBarry Smith 1938d382aafbSBarry Smith Input Parameters: 1939d382aafbSBarry Smith + b - pointer to initial memory space 1940d382aafbSBarry Smith - n - length (in bytes) of space to copy 1941d382aafbSBarry Smith 1942d382aafbSBarry Smith Output Parameter: 1943d382aafbSBarry Smith . a - pointer to copy space 1944d382aafbSBarry Smith 1945d382aafbSBarry Smith Level: intermediate 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith Compile Option: 1948d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1949d382aafbSBarry Smith for memory copies on double precision values. 1950d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1951d382aafbSBarry Smith for memory copies on double precision values. 1952d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1953d382aafbSBarry Smith for memory copies on double precision values. 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith Note: 1956d382aafbSBarry Smith This routine is analogous to memcpy(). 1957d382aafbSBarry Smith 1958503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1959503cfb0cSBarry Smith 1960d382aafbSBarry Smith Concepts: memory^copying 1961d382aafbSBarry Smith Concepts: copying^memory 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith .seealso: PetscMemmove() 1964d382aafbSBarry Smith 1965d382aafbSBarry Smith @*/ 19667087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1967d382aafbSBarry Smith { 1968d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1969c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1970c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1971a7e36092SMatthew G Knepley PetscFunctionBegin; 1972e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1973e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1974a7e36092SMatthew G Knepley #else 1975d382aafbSBarry Smith PetscFunctionBegin; 1976a7e36092SMatthew G Knepley #endif 1977a47a537aSLisandro Dalcin if (a != b && n > 0) { 1978d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1979e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1980d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1981d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1982d382aafbSBarry Smith #endif 1983d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1984c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1985d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1986d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1987c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1988c5df96a5SBarry Smith PetscErrorCode ierr; 1989c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19908b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1991d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1992d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1993d382aafbSBarry Smith #else 1994d382aafbSBarry Smith size_t i; 1995d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1996d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1997d382aafbSBarry Smith #endif 1998d382aafbSBarry Smith } else { 1999d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 2000d382aafbSBarry Smith } 2001d382aafbSBarry Smith #else 2002d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 2003d382aafbSBarry Smith #endif 2004d382aafbSBarry Smith } 2005d382aafbSBarry Smith PetscFunctionReturn(0); 2006d382aafbSBarry Smith } 2007d382aafbSBarry Smith 2008d382aafbSBarry Smith /*@C 2009d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 2010d382aafbSBarry Smith 2011d382aafbSBarry Smith Not Collective 2012d382aafbSBarry Smith 2013d382aafbSBarry Smith Input Parameters: 2014d382aafbSBarry Smith + a - pointer to beginning memory location 2015d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 2016d382aafbSBarry Smith 2017d382aafbSBarry Smith Level: intermediate 2018d382aafbSBarry Smith 2019d382aafbSBarry Smith Compile Option: 2020d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 2021d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 2022d382aafbSBarry Smith 2023503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 2024503cfb0cSBarry Smith 2025d382aafbSBarry Smith Concepts: memory^zeroing 2026d382aafbSBarry Smith Concepts: zeroing^memory 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith .seealso: PetscMemcpy() 2029d382aafbSBarry Smith @*/ 20307087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 2031d382aafbSBarry Smith { 2032d382aafbSBarry Smith if (n > 0) { 2033d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2034e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2035d382aafbSBarry Smith #endif 2036d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2037d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2038d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2039d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2040d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2041d382aafbSBarry Smith } else { 2042d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2043d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2044d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2045d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2046d382aafbSBarry Smith } else { 2047d382aafbSBarry Smith #endif 2048d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2049d382aafbSBarry Smith bzero((char *)a,n); 2050d382aafbSBarry Smith #else 2051d382aafbSBarry Smith memset((char*)a,0,n); 2052d382aafbSBarry Smith #endif 2053d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2054d382aafbSBarry Smith } 2055d382aafbSBarry Smith #endif 2056d382aafbSBarry Smith } 2057d382aafbSBarry Smith return 0; 2058d382aafbSBarry Smith } 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith /*MC 2061d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2062d382aafbSBarry Smith 2063eca87e8dSBarry Smith Synopsis: 2064aaa7dc30SBarry Smith #include <petscsys.h> 2065eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2066eca87e8dSBarry Smith 2067d382aafbSBarry Smith Not Collective 2068d382aafbSBarry Smith 2069d382aafbSBarry Smith Input Parameters: 2070d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2071d382aafbSBarry Smith . n - number of elements to fetch 2072d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 207350d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2074d382aafbSBarry Smith 2075d382aafbSBarry Smith Level: developer 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith Notes: 2078d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2079d382aafbSBarry Smith 208050d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 208150d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 208250d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 208363cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 208463cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 208563cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2086d382aafbSBarry Smith 2087d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2088d382aafbSBarry Smith address). 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith Concepts: memory 2091d382aafbSBarry Smith M*/ 2092d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2093d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2094d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2095d382aafbSBarry Smith } while (0) 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith /* 2098d382aafbSBarry Smith Determine if some of the kernel computation routines use 2099d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2100d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2101d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2102e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2103d382aafbSBarry Smith */ 2104d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2105d382aafbSBarry Smith 2106d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2107d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2108d382aafbSBarry Smith #endif 2109d382aafbSBarry Smith 21105a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 21115a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2112d382aafbSBarry Smith #endif 2113d382aafbSBarry Smith 2114d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2115d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2116d382aafbSBarry Smith #endif 2117d382aafbSBarry Smith 2118d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2119d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2120d382aafbSBarry Smith #endif 2121d382aafbSBarry Smith 2122d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2123d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2124d382aafbSBarry Smith #endif 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2127d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2128d382aafbSBarry Smith #endif 2129d382aafbSBarry Smith 2130d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2131d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2132d382aafbSBarry Smith #endif 2133d382aafbSBarry Smith 2134d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2135d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2136d382aafbSBarry Smith #endif 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2139d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2140d382aafbSBarry Smith #endif 2141d382aafbSBarry Smith 2142d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2143d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2144d382aafbSBarry Smith #endif 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2147d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2148d382aafbSBarry Smith #endif 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2151d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2152d382aafbSBarry Smith #endif 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2155d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2156d382aafbSBarry Smith #endif 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2159d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2160d382aafbSBarry Smith #endif 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith #endif 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith /* 2165d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2166d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2167d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2168d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2169d382aafbSBarry Smith ugly extern "C" {} wrappers. 2170d382aafbSBarry Smith */ 2171d382aafbSBarry Smith #if defined(__cplusplus) 2172d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2173d382aafbSBarry Smith #define EXTERN_C_END } 2174d382aafbSBarry Smith #else 2175d382aafbSBarry Smith #define EXTERN_C_BEGIN 2176d382aafbSBarry Smith #define EXTERN_C_END 2177d382aafbSBarry Smith #endif 2178d382aafbSBarry Smith 2179d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2180d382aafbSBarry Smith 2181d382aafbSBarry Smith /*MC 2182d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2183d382aafbSBarry Smith communication 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith Level: beginner 2186d382aafbSBarry Smith 2187d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2188d382aafbSBarry Smith 2189d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2190d382aafbSBarry Smith M*/ 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith /*MC 2193d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2194d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 21951cc8b206SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128 2196d382aafbSBarry Smith 2197d382aafbSBarry Smith Level: beginner 2198d382aafbSBarry Smith 21991cc8b206SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL 2200d382aafbSBarry Smith M*/ 2201d382aafbSBarry Smith 2202d382aafbSBarry Smith /*MC 22038619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 22048619c96cSJed Brown 22058619c96cSJed Brown Synopsis: 22068619c96cSJed Brown #include <petscsys.h> 22078619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 22088619c96cSJed Brown 22098619c96cSJed Brown Level: beginner 22108619c96cSJed Brown 22118619c96cSJed Brown Note: 22128cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 22138619c96cSJed Brown 22148619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 22158619c96cSJed Brown M*/ 22168619c96cSJed Brown 22178619c96cSJed Brown /*MC 2218d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2219d382aafbSBarry Smith 2220d382aafbSBarry Smith Level: beginner 2221d382aafbSBarry Smith 22221cc8b206SBarry Smith .seealso: PetscScalar 2223d382aafbSBarry Smith M*/ 2224d382aafbSBarry Smith 2225d382aafbSBarry Smith /*MC 2226d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2227d382aafbSBarry Smith 2228d382aafbSBarry Smith Level: beginner 2229d382aafbSBarry Smith 2230d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2231d382aafbSBarry Smith pass this value 2232d382aafbSBarry Smith 22331cc8b206SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT 2234d382aafbSBarry Smith M*/ 2235d382aafbSBarry Smith 2236d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2237d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2238014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2240d382aafbSBarry Smith #else 2241d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2242d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2243d382aafbSBarry Smith #endif 2244d382aafbSBarry Smith #endif 2245d382aafbSBarry Smith 2246d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2247d382aafbSBarry Smith 2248d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2249d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2250d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2251d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2252d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2253d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2254d382aafbSBarry Smith 225561b0d812SBarry Smith /*@C 225661b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 225761b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 225861b0d812SBarry Smith 225961b0d812SBarry Smith Not Collective 226061b0d812SBarry Smith 226161b0d812SBarry Smith Input Parameter: 226261b0d812SBarry Smith . a - the PetscInt value 226361b0d812SBarry Smith 226461b0d812SBarry Smith Output Parameter: 226561b0d812SBarry Smith . b - the resulting PetscBLASInt value 226661b0d812SBarry Smith 226761b0d812SBarry Smith Level: advanced 226861b0d812SBarry Smith 226961b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 227061b0d812SBarry Smith @*/ 2271c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2272c5df96a5SBarry Smith { 2273c5df96a5SBarry Smith PetscFunctionBegin; 2274ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2275c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2276c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2277c5df96a5SBarry Smith #endif 2278c5df96a5SBarry Smith PetscFunctionReturn(0); 2279c5df96a5SBarry Smith } 2280c5df96a5SBarry Smith 228161b0d812SBarry Smith /*@C 228261b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 228361b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 228461b0d812SBarry Smith 228561b0d812SBarry Smith Not Collective 228661b0d812SBarry Smith 228761b0d812SBarry Smith Input Parameter: 228861b0d812SBarry Smith . a - the PetscInt value 228961b0d812SBarry Smith 229061b0d812SBarry Smith Output Parameter: 229161b0d812SBarry Smith . b - the resulting PetscMPIInt value 229261b0d812SBarry Smith 229361b0d812SBarry Smith Level: advanced 229461b0d812SBarry Smith 229561b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 229661b0d812SBarry Smith @*/ 22974dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22984dc2109aSBarry Smith { 22994dc2109aSBarry Smith PetscFunctionBegin; 2300ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 23014dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 23024dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 23034dc2109aSBarry Smith #endif 23044dc2109aSBarry Smith PetscFunctionReturn(0); 23054dc2109aSBarry Smith } 23064dc2109aSBarry Smith 2307bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 23082f18eb33SBarry Smith 23092f18eb33SBarry Smith /*@C 23102f18eb33SBarry Smith 23112f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 23122f18eb33SBarry Smith 23132f18eb33SBarry Smith Not Collective 23142f18eb33SBarry Smith 23152f18eb33SBarry Smith Input Parameter: 23162f18eb33SBarry Smith + a - the PetscReal value 23172f18eb33SBarry Smith - b - the second value 23182f18eb33SBarry Smith 23192f18eb33SBarry Smith Output Parameter: 23202f18eb33SBarry Smith . c - the result as a PetscInt value 23212f18eb33SBarry Smith 2322bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23232f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23242f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23252f18eb33SBarry Smith 23262f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23272f18eb33SBarry Smith 23282f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23292f18eb33SBarry Smith 23302f18eb33SBarry Smith Level: advanced 23312f18eb33SBarry Smith 23322f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23332f18eb33SBarry Smith @*/ 23342f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23352f18eb33SBarry Smith { 2336bafee8b4SSatish Balay PetscInt64 r; 23372f18eb33SBarry Smith 2338bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23392f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23402f18eb33SBarry Smith return (PetscInt) r; 23412f18eb33SBarry Smith } 23422f18eb33SBarry Smith 23432f18eb33SBarry Smith /*@C 23442f18eb33SBarry Smith 23452f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23462f18eb33SBarry Smith 23472f18eb33SBarry Smith Not Collective 23482f18eb33SBarry Smith 23492f18eb33SBarry Smith Input Parameter: 23502f18eb33SBarry Smith + a - the PetscInt value 23512f18eb33SBarry Smith - b - the second value 23522f18eb33SBarry Smith 23532f18eb33SBarry Smith Output Parameter: 23542f18eb33SBarry Smith . c - the result as a PetscInt value 23552f18eb33SBarry Smith 2356bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23572f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23582f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23592f18eb33SBarry Smith 23602f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23612f18eb33SBarry Smith 23622f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23632f18eb33SBarry Smith 23642f18eb33SBarry Smith Level: advanced 23652f18eb33SBarry Smith 23662f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23672f18eb33SBarry Smith @*/ 23682f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23692f18eb33SBarry Smith { 2370bafee8b4SSatish Balay PetscInt64 r; 23712f18eb33SBarry Smith 2372bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23732f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23742f18eb33SBarry Smith return (PetscInt) r; 23752f18eb33SBarry Smith } 23762f18eb33SBarry Smith 2377f91af8c7SBarry Smith /*@C 2378f91af8c7SBarry Smith 2379f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2380f91af8c7SBarry Smith 2381f91af8c7SBarry Smith Not Collective 2382f91af8c7SBarry Smith 2383f91af8c7SBarry Smith Input Parameter: 2384f91af8c7SBarry Smith + a - the PetscInt value 2385f91af8c7SBarry Smith - b - the second value 2386f91af8c7SBarry Smith 2387f91af8c7SBarry Smith Output Parameter: 2388f91af8c7SBarry Smith . c - the result as a PetscInt value 2389f91af8c7SBarry Smith 2390bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2391f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2392f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2393f91af8c7SBarry Smith 2394f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2395f91af8c7SBarry Smith 2396f91af8c7SBarry Smith Level: advanced 2397f91af8c7SBarry Smith 2398f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2399f91af8c7SBarry Smith @*/ 2400f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2401f91af8c7SBarry Smith { 2402bafee8b4SSatish Balay PetscInt64 r; 2403f91af8c7SBarry Smith 2404bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2405f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2406f91af8c7SBarry Smith return (PetscInt) r; 2407f91af8c7SBarry Smith } 2408f91af8c7SBarry Smith 24092f18eb33SBarry Smith /*@C 24102f18eb33SBarry Smith 24112f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 24122f18eb33SBarry Smith 24132f18eb33SBarry Smith Not Collective 24142f18eb33SBarry Smith 24152f18eb33SBarry Smith Input Parameter: 24162f18eb33SBarry Smith + a - the PetscInt value 24172f18eb33SBarry Smith - b - the second value 24182f18eb33SBarry Smith 24192f18eb33SBarry Smith Output Parameter:ma 2420220afb94SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24212f18eb33SBarry Smith 2422bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24232f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24242f18eb33SBarry Smith 2425220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24262f18eb33SBarry Smith 24272f18eb33SBarry Smith Level: advanced 24282f18eb33SBarry Smith 2429220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 24302f18eb33SBarry Smith @*/ 24312f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24322f18eb33SBarry Smith { 2433bafee8b4SSatish Balay PetscInt64 r; 24342f18eb33SBarry Smith 24352f18eb33SBarry Smith PetscFunctionBegin; 2436bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24372f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24382f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24392f18eb33SBarry Smith #endif 2440f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2441f91af8c7SBarry Smith PetscFunctionReturn(0); 2442f91af8c7SBarry Smith } 2443f91af8c7SBarry Smith 2444f91af8c7SBarry Smith /*@C 2445f91af8c7SBarry Smith 2446*fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2447f91af8c7SBarry Smith 2448f91af8c7SBarry Smith Not Collective 2449f91af8c7SBarry Smith 2450f91af8c7SBarry Smith Input Parameter: 2451f91af8c7SBarry Smith + a - the PetscInt value 2452f91af8c7SBarry Smith - b - the second value 2453f91af8c7SBarry Smith 2454f91af8c7SBarry Smith Output Parameter:ma 2455f91af8c7SBarry Smith . c - the result as a PetscInt value 2456f91af8c7SBarry Smith 2457bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2458f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2459f91af8c7SBarry Smith 2460f91af8c7SBarry Smith Level: advanced 2461f91af8c7SBarry Smith 2462f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2463f91af8c7SBarry Smith @*/ 2464f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2465f91af8c7SBarry Smith { 2466bafee8b4SSatish Balay PetscInt64 r; 2467f91af8c7SBarry Smith 2468f91af8c7SBarry Smith PetscFunctionBegin; 2469bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2470f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2471f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2472f91af8c7SBarry Smith #endif 2473f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24742f18eb33SBarry Smith PetscFunctionReturn(0); 24752f18eb33SBarry Smith } 2476c5df96a5SBarry Smith 2477d382aafbSBarry Smith /* 24782981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2479d382aafbSBarry Smith */ 2480d382aafbSBarry Smith #if defined(hz) 2481d382aafbSBarry Smith #undef hz 2482d382aafbSBarry Smith #endif 2483d382aafbSBarry Smith 2484d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2485d382aafbSBarry Smith 2486d382aafbSBarry Smith 2487d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2488d382aafbSBarry Smith #include <limits.h> 2489d382aafbSBarry Smith #endif 2490d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2491d382aafbSBarry Smith #include <sys/param.h> 2492d382aafbSBarry Smith #endif 2493d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2494d382aafbSBarry Smith #include <sys/types.h> 2495d382aafbSBarry Smith #endif 2496d382aafbSBarry Smith #if defined(MAXPATHLEN) 2497d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2498d382aafbSBarry Smith #elif defined(MAX_PATH) 2499d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2500d382aafbSBarry Smith #elif defined(_MAX_PATH) 2501d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2502d382aafbSBarry Smith #else 2503d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2504d382aafbSBarry Smith #endif 2505d382aafbSBarry Smith 2506d382aafbSBarry Smith /*MC 2507d382aafbSBarry Smith 25081b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 25091b266c99SBarry Smith of every function and module definition you need something like 2510d382aafbSBarry Smith 2511d382aafbSBarry Smith $ 2512af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2513d382aafbSBarry Smith $ use petscXXXX 25141b266c99SBarry Smith 25151b266c99SBarry Smith You can delcare PETSc variables using either 25161b266c99SBarry Smith 2517d382aafbSBarry Smith $ XXX variablename 25181b266c99SBarry Smith $ type(tXXX) variablename 25191b266c99SBarry Smith 25201b266c99SBarry Smith for example 25211b266c99SBarry Smith 2522bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 25231b266c99SBarry Smith $ use petscvec 2524d382aafbSBarry Smith $ 25251b266c99SBarry Smith $ Vec A 25261b266c99SBarry Smith $ type(tVec) A 2527d382aafbSBarry Smith 2528d382aafbSBarry Smith Level: beginner 2529d382aafbSBarry Smith 2530d382aafbSBarry Smith M*/ 2531d382aafbSBarry Smith 2532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2536014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2537014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 253827710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25395f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2540d382aafbSBarry Smith 2541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 254360e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2546014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25476c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 254817d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 254917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2550014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2551014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 255217df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2553014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2555745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2558014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 25596c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 25606c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2561e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2562d382aafbSBarry Smith 2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2565d382aafbSBarry Smith 256676bdecfbSBarry Smith /*J 2567d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2568d382aafbSBarry Smith 2569d382aafbSBarry Smith Level: beginner 2570d382aafbSBarry Smith 2571e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2572d382aafbSBarry Smith with the option --download-sprng 2573d382aafbSBarry Smith 25748f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 257576bdecfbSBarry Smith J*/ 257619fd82e9SBarry Smith typedef const char* PetscRandomType; 2577d382aafbSBarry Smith #define PETSCRAND "rand" 2578d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2579d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2580c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2581d382aafbSBarry Smith 2582d382aafbSBarry Smith /* Logging support */ 2583014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2584d382aafbSBarry Smith 2585607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2586d382aafbSBarry Smith 2587d382aafbSBarry Smith /*S 2588d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2589d382aafbSBarry Smith 2590d382aafbSBarry Smith Level: intermediate 2591d382aafbSBarry Smith 2592d382aafbSBarry Smith Concepts: random numbers 2593d382aafbSBarry Smith 2594d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2595d382aafbSBarry Smith S*/ 2596d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2597d382aafbSBarry Smith 2598d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2599140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2600d382aafbSBarry Smith 2601bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 260219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 260419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2605685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2607d382aafbSBarry Smith 2608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2617d382aafbSBarry Smith 2618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 262597540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 262697540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2627d382aafbSBarry Smith 2628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2639e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2640d382aafbSBarry Smith 2641d382aafbSBarry Smith /* 2642d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2643d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2644d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2645d382aafbSBarry Smith PetscBinarySeek(). 2646d382aafbSBarry Smith */ 2647d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2648d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2649d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2650d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2651d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2652d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2653d382aafbSBarry Smith 2654d382aafbSBarry Smith /*E 2655d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2656d382aafbSBarry Smith 2657d382aafbSBarry Smith Level: advanced 2658d382aafbSBarry Smith 2659d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2660d382aafbSBarry Smith E*/ 2661d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2665d382aafbSBarry Smith 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2672d382aafbSBarry Smith 2673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2678cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2679cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2680d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2681d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2682d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2683d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 26846afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 26856afbe7ddSJed Brown MPI_Request**,MPI_Request**, 26866afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 26876afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 26886afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2689d382aafbSBarry Smith 26906145cd65SJed Brown /*E 26916145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 26926145cd65SJed Brown 26936145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 26946145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 26956145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 26966145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 26976145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 26981654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 26991654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27006145cd65SJed Brown 27016145cd65SJed Brown Level: developer 27026145cd65SJed Brown 27036145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27046145cd65SJed Brown E*/ 27056145cd65SJed Brown typedef enum { 27066145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27076145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27081654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 270912af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27106145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27116145cd65SJed Brown } PetscBuildTwoSidedType; 27126145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27136145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27146145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27156145cd65SJed Brown 2716014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2717d382aafbSBarry Smith 2718d382aafbSBarry Smith /*E 2719d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2720d382aafbSBarry Smith 2721d382aafbSBarry Smith Level: beginner 2722d382aafbSBarry Smith 2723d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2724d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2725d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2726d382aafbSBarry Smith E*/ 27276fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2728d382aafbSBarry Smith 2729d382aafbSBarry Smith /*MC 2730d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2731d382aafbSBarry Smith 2732d382aafbSBarry Smith Level: beginner 2733d382aafbSBarry Smith 2734d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2735eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2736eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2737d382aafbSBarry Smith 2738d382aafbSBarry Smith M*/ 2739d382aafbSBarry Smith 2740d382aafbSBarry Smith /*MC 2741d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2742d382aafbSBarry Smith value into that location 2743d382aafbSBarry Smith 2744d382aafbSBarry Smith Level: beginner 2745d382aafbSBarry Smith 2746d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2747eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2748eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2749d382aafbSBarry Smith 2750d382aafbSBarry Smith M*/ 2751d382aafbSBarry Smith 2752d382aafbSBarry Smith /*MC 2753d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2754d382aafbSBarry Smith 2755d382aafbSBarry Smith Level: beginner 2756d382aafbSBarry Smith 2757d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2758d382aafbSBarry Smith 2759d382aafbSBarry Smith M*/ 2760d382aafbSBarry Smith 2761ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2762ce94432eSBarry Smith 276345487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 276445487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 276545487dadSJed Brown 2766d382aafbSBarry Smith /*S 2767306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2768306c2d5bSBarry Smith 2769306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2770306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 27713bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2772306c2d5bSBarry Smith 2773306c2d5bSBarry Smith Sample Usage: 2774306c2d5bSBarry Smith PetscSubcommCreate() 2775306c2d5bSBarry Smith PetscSubcommSetNumber() 2776306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2777306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2778306c2d5bSBarry Smith PetscSubcommDestroy() 2779d382aafbSBarry Smith 2780d382aafbSBarry Smith Level: advanced 2781d382aafbSBarry Smith 2782d382aafbSBarry Smith Concepts: communicator, create 2783306c2d5bSBarry Smith 2784306c2d5bSBarry Smith Notes: 2785306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 27863bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2787306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2788306c2d5bSBarry Smith 2789306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2790306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2791306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2792306c2d5bSBarry Smith 2793306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2794306c2d5bSBarry Smith are performed. 2795306c2d5bSBarry Smith 2796306c2d5bSBarry Smith 2797306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2798306c2d5bSBarry Smith 2799d382aafbSBarry Smith S*/ 2800d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2801d382aafbSBarry Smith 2802d382aafbSBarry Smith struct _n_PetscSubcomm { 2803d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2804d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2805306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 280645487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 280745487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2808708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 280945487dadSJed Brown PetscSubcommType type; 2810e5acf8a4SHong Zhang char *subcommprefix; 2811d382aafbSBarry Smith }; 2812d382aafbSBarry Smith 2813c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2814306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 281536be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2819014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 282065d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2821053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2822f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2823e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2824d382aafbSBarry Smith 28250f453b92SJed Brown /*S 28260f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28270f453b92SJed Brown 28280f453b92SJed Brown Level: developer 28290f453b92SJed Brown 28300f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28310f453b92SJed Brown S*/ 28320f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 283313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28340f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 283513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2836137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2837137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2838137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 283913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 284013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28410f453b92SJed Brown 2842471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2843471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2844471ecdacSJed Brown * possible. */ 284535005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2846d382aafbSBarry Smith 28479de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 28489de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 28499de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 28509de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 28519de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 28529de0f6ecSBarry Smith 2853268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2854*fbfcfee5SBarry Smith 28551f817a21SBarry Smith /*@C 28561f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28571f817a21SBarry Smith 28581f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 28591f817a21SBarry Smith 28601f817a21SBarry Smith Input Parameters: 28611f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 28621f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 28631f817a21SBarry Smith 2864850545d0SSatish Balay Level: intermediate 2865850545d0SSatish Balay 28661f817a21SBarry Smith Options Database: 2867063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 28681f817a21SBarry Smith @*/ 2869dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2870dff31646SBarry Smith { 2871dff31646SBarry Smith size_t len; 2872dff31646SBarry Smith char *vstring; 2873dff31646SBarry Smith PetscErrorCode ierr; 2874dff31646SBarry Smith 28751f817a21SBarry Smith PetscFunctionBegin; 28768d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2877dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 287835005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2879dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2880dff31646SBarry Smith if (set) *set = PETSC_TRUE; 28811f817a21SBarry Smith PetscFunctionReturn(0); 2882dff31646SBarry Smith } 2883dff31646SBarry Smith 2884b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2885fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2886fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2887f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2888fe278a28SBarry Smith 2889f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2890f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2891b967cddfSBarry Smith 289204102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2893763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2894dff31646SBarry Smith 289568e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 28965dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2897d382aafbSBarry Smith 2898b2566f29SBarry Smith 2899b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2900b2566f29SBarry Smith /* 2901b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2902b2566f29SBarry Smith */ 29038f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 290477a5e07dSBarry Smith 290577a5e07dSBarry Smith /*MC 290677a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 290777a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 290877a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 290977a5e07dSBarry Smith 291077a5e07dSBarry Smith Collective on MPI_Comm 291177a5e07dSBarry Smith 291277a5e07dSBarry Smith Synopsis: 291377a5e07dSBarry Smith #include <petscsys.h> 291477a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 291577a5e07dSBarry Smith 291677a5e07dSBarry Smith Input Parameters: 291777a5e07dSBarry Smith + indata - pointer to the input data to be reduced 291877a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 291977a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 292077a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 292177a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 292277a5e07dSBarry Smith 292377a5e07dSBarry Smith Output Parameter: 292477a5e07dSBarry Smith . outdata - the reduced values 292577a5e07dSBarry Smith 292677a5e07dSBarry Smith Notes: In optimized mode this directly calls MPI_Allreduce() 292777a5e07dSBarry Smith 292877a5e07dSBarry Smith Level: developer 292977a5e07dSBarry Smith 293077a5e07dSBarry Smith .seealso: MPI_Allreduce() 293177a5e07dSBarry Smith M*/ 2932*fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2933b2566f29SBarry Smith #else 2934b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2935b2566f29SBarry Smith #endif 2936b2566f29SBarry Smith 2937d382aafbSBarry Smith #endif 2938