12eac72dbSBarry Smith /* 237f753daSBarry Smith Defines the vector component of PETSc. Vectors generally represent 337f753daSBarry Smith degrees of freedom for finite element/finite difference functions 484cb2905SBarry Smith on a grid. They have more mathematical structure then simple arrays. 52eac72dbSBarry Smith */ 62eac72dbSBarry Smith 70a835dfdSSatish Balay #ifndef __PETSCVEC_H 80a835dfdSSatish Balay #define __PETSCVEC_H 90a835dfdSSatish Balay #include "petscis.h" 100a835dfdSSatish Balay #include "petscsys.h" 11e9fa29b7SSatish Balay PETSC_EXTERN_CXX_BEGIN 122eac72dbSBarry Smith 1309321671SBarry Smith /*S 148a124369SBarry Smith PetscMap - Abstract PETSc object that defines the layout of vector and 15013c094aSBarry Smith matrices across processors 1609321671SBarry Smith 1709321671SBarry Smith Level: advanced 1809321671SBarry Smith 1909321671SBarry Smith Notes: 2009321671SBarry Smith Does not play a role in the PETSc design, can be ignored 2109321671SBarry Smith 2209321671SBarry Smith Concepts: parallel decomposition 2309321671SBarry Smith 248a124369SBarry Smith .seealso: PetscMapCreateMPI() 2509321671SBarry Smith S*/ 268a124369SBarry Smith typedef struct _p_PetscMap* PetscMap; 2709321671SBarry Smith 28d772e1d7SMatthew Knepley #define MAP_SEQ "seq" 29d772e1d7SMatthew Knepley #define MAP_MPI "mpi" 3049773a63SBarry Smith #define PetscMapType char* 31d772e1d7SMatthew Knepley 32d772e1d7SMatthew Knepley /* Logging support */ 336849ba73SBarry Smith extern PetscCookie MAP_COOKIE; 34d772e1d7SMatthew Knepley 35dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapCreate(MPI_Comm,PetscMap*); 3632dcc486SBarry Smith EXTERN PetscErrorCode PetscMapCreateMPI(MPI_Comm,PetscInt,PetscInt,PetscMap*); 37dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapSetFromOptions(PetscMap); 38dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapPrintHelp(PetscMap); 39dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapDestroy(PetscMap); 40d772e1d7SMatthew Knepley 4132dcc486SBarry Smith EXTERN PetscErrorCode PetscMapSetLocalSize(PetscMap,PetscInt); 4232dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetLocalSize(PetscMap,PetscInt *); 4332dcc486SBarry Smith EXTERN PetscErrorCode PetscMapSetSize(PetscMap,PetscInt); 4432dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetSize(PetscMap,PetscInt *); 4532dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetLocalRange(PetscMap,PetscInt *,PetscInt *); 4632dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetGlobalRange(PetscMap,PetscInt *[]); 47d772e1d7SMatthew Knepley 48d772e1d7SMatthew Knepley /* Dynamic creation and loading functions */ 49d772e1d7SMatthew Knepley extern PetscFList PetscMapList; 50d772e1d7SMatthew Knepley extern PetscTruth PetscMapRegisterAllCalled; 51dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapSetType(PetscMap, const PetscMapType); 52dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapGetType(PetscMap, PetscMapType *); 536849ba73SBarry Smith EXTERN PetscErrorCode PetscMapRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscMap)); 54dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapRegisterAll(const char []); 55dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapRegisterDestroy(void); 56d772e1d7SMatthew Knepley #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 57d772e1d7SMatthew Knepley #define PetscMapRegisterDynamic(a,b,c,d) PetscMapRegister(a,b,c,0) 58d772e1d7SMatthew Knepley #else 59d772e1d7SMatthew Knepley #define PetscMapRegisterDynamic(a,b,c,d) PetscMapRegister(a,b,c,d) 60d772e1d7SMatthew Knepley #endif 61d772e1d7SMatthew Knepley 6209321671SBarry Smith /*S 6309321671SBarry Smith Vec - Abstract PETSc vector object 6409321671SBarry Smith 6509321671SBarry Smith Level: beginner 6609321671SBarry Smith 6709321671SBarry Smith Concepts: field variables, unknowns, arrays 6809321671SBarry Smith 6909321671SBarry Smith .seealso: VecCreate(), VecType, VecSetType() 7009321671SBarry Smith S*/ 71f09e8eb9SSatish Balay typedef struct _p_Vec* Vec; 7209321671SBarry Smith 7309321671SBarry Smith /*S 7409321671SBarry Smith VecScatter - Object used to manage communication of data 7509321671SBarry Smith between vectors in parallel. Manages both scatters and gathers 7609321671SBarry Smith 7709321671SBarry Smith Level: beginner 7809321671SBarry Smith 7909321671SBarry Smith Concepts: scatter 8009321671SBarry Smith 8109321671SBarry Smith .seealso: VecScatterCreate(), VecScatterBegin(), VecScatterEnd() 8209321671SBarry Smith S*/ 83f09e8eb9SSatish Balay typedef struct _p_VecScatter* VecScatter; 8409321671SBarry Smith 8509321671SBarry Smith /*E 8609321671SBarry Smith VecType - String with the name of a PETSc vector or the creation function 8709321671SBarry Smith with an optional dynamic library name, for example 8809321671SBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myveccreate() 8909321671SBarry Smith 9009321671SBarry Smith Level: beginner 9109321671SBarry Smith 9209321671SBarry Smith .seealso: VecSetType(), Vec 9309321671SBarry Smith E*/ 940676abe4SMatthew Knepley #define VECSEQ "seq" 950676abe4SMatthew Knepley #define VECMPI "mpi" 960676abe4SMatthew Knepley #define VECFETI "feti" 970676abe4SMatthew Knepley #define VECSHARED "shared" 9849773a63SBarry Smith #define VecType char* 992eac72dbSBarry Smith 100fd487807SMatthew Knepley /* Logging support */ 101552e946dSBarry Smith #define VEC_FILE_COOKIE 1211214 1026849ba73SBarry Smith extern PetscCookie VEC_COOKIE, VEC_SCATTER_COOKIE; 1036849ba73SBarry Smith extern PetscEvent VEC_View, VEC_Max, VEC_Min, VEC_DotBarrier, VEC_Dot, VEC_MDotBarrier, VEC_MDot, VEC_TDot, VEC_MTDot; 1046849ba73SBarry Smith extern PetscEvent VEC_Norm, VEC_Normalize, VEC_Scale, VEC_Copy, VEC_Set, VEC_AXPY, VEC_AYPX, VEC_WAXPY, VEC_MAXPY; 1056849ba73SBarry Smith extern PetscEvent VEC_AssemblyEnd, VEC_PointwiseMult, VEC_SetValues, VEC_Load, VEC_ScatterBarrier, VEC_ScatterBegin, VEC_ScatterEnd; 1066849ba73SBarry Smith extern PetscEvent VEC_SetRandom, VEC_ReduceArithmetic, VEC_ReduceBarrier, VEC_ReduceCommunication; 1076849ba73SBarry Smith extern PetscEvent VEC_Swap, VEC_AssemblyBegin, VEC_NormBarrier; 1088ba1e511SMatthew Knepley 109dfbe8321SBarry Smith EXTERN PetscErrorCode VecInitializePackage(char *); 110fd487807SMatthew Knepley 111dfbe8321SBarry Smith EXTERN PetscErrorCode VecCreate(MPI_Comm,Vec *); 112*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecCreate,(Vec *x),(PETSC_COMM_SELF,x)) 11332dcc486SBarry Smith EXTERN PetscErrorCode VecCreateSeq(MPI_Comm,PetscInt,Vec*); 114*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecCreateSeq,(PetscInt n,Vec *x),(PETSC_COMM_SELF,n,x)) 11532dcc486SBarry Smith EXTERN PetscErrorCode VecCreateMPI(MPI_Comm,PetscInt,PetscInt,Vec*); 116*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecCreateMPI,(PetscInt n,PetscInt N,Vec *x),(PETSC_COMM_WORLD,n,N,x)) 11732dcc486SBarry Smith EXTERN PetscErrorCode VecCreateSeqWithArray(MPI_Comm,PetscInt,const PetscScalar[],Vec*); 118*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecCreateSeqWithArray,(PetscInt n,PetscScalar s[],Vec *x),(PETSC_COMM_SELF,n,s,x)) 11932dcc486SBarry Smith EXTERN PetscErrorCode VecCreateMPIWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar[],Vec*); 120*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecCreateMPIWithArray,(PetscInt n,PetscInt N,PetscScalar s[],Vec *x),(PETSC_COMM_WORLD,n,N,s,x)) 12132dcc486SBarry Smith EXTERN PetscErrorCode VecCreateShared(MPI_Comm,PetscInt,PetscInt,Vec*); 122dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetFromOptions(Vec); 123dfbe8321SBarry Smith EXTERN PetscErrorCode VecPrintHelp(Vec); 124dfbe8321SBarry Smith EXTERN PetscErrorCode VecDestroy(Vec); 1254b0e389bSBarry Smith 12632dcc486SBarry Smith EXTERN PetscErrorCode VecSetSizes(Vec,PetscInt,PetscInt); 127fd487807SMatthew Knepley 128dfbe8321SBarry Smith EXTERN PetscErrorCode VecDot(Vec,Vec,PetscScalar*); 129dfbe8321SBarry Smith EXTERN PetscErrorCode VecTDot(Vec,Vec,PetscScalar*); 13032dcc486SBarry Smith EXTERN PetscErrorCode VecMDot(PetscInt,Vec,const Vec[],PetscScalar*); 13132dcc486SBarry Smith EXTERN PetscErrorCode VecMTDot(PetscInt,Vec,const Vec[],PetscScalar*); 132cddf8d76SBarry Smith 13309321671SBarry Smith /*E 13409321671SBarry Smith NormType - determines what type of norm to compute 13509321671SBarry Smith 13609321671SBarry Smith Level: beginner 13709321671SBarry Smith 13809321671SBarry Smith .seealso: VecNorm(), VecNormBegin(), VecNormEnd(), MatNorm() 13909321671SBarry Smith E*/ 14093c39befSBarry Smith typedef enum {NORM_1=1,NORM_2=2,NORM_FROBENIUS=3,NORM_INFINITY=4,NORM_1_AND_2=5} NormType; 141cddf8d76SBarry Smith #define NORM_MAX NORM_INFINITY 14209321671SBarry Smith 1439b250c83SBarry Smith /*MC 1449b250c83SBarry Smith NORM_1 - the one norm, ||v|| = sum_i | v_i |. ||A|| = max_j || v_*j ||, maximum column sum 1459b250c83SBarry Smith 1469b250c83SBarry Smith Level: beginner 1479b250c83SBarry Smith 1489b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_2, NORM_FROBENIUS, 1499b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1509b250c83SBarry Smith 1519b250c83SBarry Smith M*/ 1529b250c83SBarry Smith 1539b250c83SBarry Smith /*MC 1549b250c83SBarry Smith NORM_2 - the two norm, ||v|| = sqrt(sum_i (v_i)^2) (vectors only) 1559b250c83SBarry Smith 1569b250c83SBarry Smith Level: beginner 1579b250c83SBarry Smith 1589b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_FROBENIUS, 1599b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1609b250c83SBarry Smith 1619b250c83SBarry Smith M*/ 1629b250c83SBarry Smith 1639b250c83SBarry Smith /*MC 1649b250c83SBarry Smith NORM_FROBENIUS - ||A|| = sqrt(sum_ij (A_ij)^2), same as NORM_2 for vectors 1659b250c83SBarry Smith 1669b250c83SBarry Smith Level: beginner 1679b250c83SBarry Smith 1689b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1699b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1709b250c83SBarry Smith 1719b250c83SBarry Smith M*/ 1729b250c83SBarry Smith 1739b250c83SBarry Smith /*MC 1749b250c83SBarry Smith NORM_INFINITY - ||v|| = max_i |v_i|. ||A|| = max_i || v_i* ||, maximum row sum 1759b250c83SBarry Smith 1769b250c83SBarry Smith Level: beginner 1779b250c83SBarry Smith 1789b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1799b250c83SBarry Smith NORM_FROBINIUS, NORM_1_AND_2 1809b250c83SBarry Smith 1819b250c83SBarry Smith M*/ 1829b250c83SBarry Smith 1839b250c83SBarry Smith /*MC 1849b250c83SBarry Smith NORM_1_AND_2 - computes both the 1 and 2 norm of a vector 1859b250c83SBarry Smith 1869b250c83SBarry Smith Level: beginner 1879b250c83SBarry Smith 1889b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1899b250c83SBarry Smith NORM_FROBINIUS, NORM_INFINITY 1909b250c83SBarry Smith 1919b250c83SBarry Smith M*/ 1929b250c83SBarry Smith 1939b250c83SBarry Smith /*MC 1949b250c83SBarry Smith NORM_MAX - see NORM_INFINITY 1959b250c83SBarry Smith 196d41222bbSBarry Smith Level: beginner 197d41222bbSBarry Smith 1989b250c83SBarry Smith M*/ 1999b250c83SBarry Smith 200dfbe8321SBarry Smith EXTERN PetscErrorCode VecNorm(Vec,NormType,PetscReal *); 201*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) 20232dcc486SBarry Smith EXTERN PetscErrorCode VecNormComposedDataID(NormType,PetscInt*); 203dfbe8321SBarry Smith EXTERN PetscErrorCode VecNormalize(Vec,PetscReal *); 204dfbe8321SBarry Smith EXTERN PetscErrorCode VecSum(Vec,PetscScalar*); 20532dcc486SBarry Smith EXTERN PetscErrorCode VecMax(Vec,PetscInt*,PetscReal *); 206*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecMax,(Vec x,PetscReal *r),(x,PETSC_NULL,r)) 20732dcc486SBarry Smith EXTERN PetscErrorCode VecMin(Vec,PetscInt*,PetscReal *); 208*045ff3e0SBarry Smith PetscPolymorphicSubroutine(VecMin,(Vec x,PetscReal *r),(x,PETSC_NULL,r)) 209dfbe8321SBarry Smith EXTERN PetscErrorCode VecScale(const PetscScalar *a,Vec v); 210dfbe8321SBarry Smith EXTERN PetscErrorCode VecCopy(Vec,Vec); 211dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetRandom(PetscRandom,Vec); 212dfbe8321SBarry Smith EXTERN PetscErrorCode VecSet(const PetscScalar*,Vec); 213dfbe8321SBarry Smith EXTERN PetscErrorCode VecSwap(Vec,Vec); 214dfbe8321SBarry Smith EXTERN PetscErrorCode VecAXPY(const PetscScalar*,Vec,Vec); 215dfbe8321SBarry Smith EXTERN PetscErrorCode VecAXPBY(const PetscScalar*,const PetscScalar *,Vec,Vec); 21632dcc486SBarry Smith EXTERN PetscErrorCode VecMAXPY(PetscInt,const PetscScalar*,Vec,Vec*); 217dfbe8321SBarry Smith EXTERN PetscErrorCode VecAYPX(const PetscScalar*,Vec,Vec); 218dfbe8321SBarry Smith EXTERN PetscErrorCode VecWAXPY(const PetscScalar*,Vec,Vec,Vec); 219fa5fa523SBarry Smith EXTERN PetscErrorCode VecPointwiseMax(Vec,Vec,Vec); 220fa5fa523SBarry Smith EXTERN PetscErrorCode VecPointwiseMaxAbs(Vec,Vec,Vec); 221fa5fa523SBarry Smith EXTERN PetscErrorCode VecPointwiseMin(Vec,Vec,Vec); 222dfbe8321SBarry Smith EXTERN PetscErrorCode VecPointwiseMult(Vec,Vec,Vec); 223dfbe8321SBarry Smith EXTERN PetscErrorCode VecPointwiseDivide(Vec,Vec,Vec); 224dfbe8321SBarry Smith EXTERN PetscErrorCode VecMaxPointwiseDivide(Vec,Vec,PetscReal*); 225dfbe8321SBarry Smith EXTERN PetscErrorCode VecShift(const PetscScalar*,Vec); 226dfbe8321SBarry Smith EXTERN PetscErrorCode VecReciprocal(Vec); 227dfbe8321SBarry Smith EXTERN PetscErrorCode VecPermute(Vec, IS, PetscTruth); 228dfbe8321SBarry Smith EXTERN PetscErrorCode VecSqrt(Vec); 229dfbe8321SBarry Smith EXTERN PetscErrorCode VecAbs(Vec); 230dfbe8321SBarry Smith EXTERN PetscErrorCode VecDuplicate(Vec,Vec*); 23132dcc486SBarry Smith EXTERN PetscErrorCode VecDuplicateVecs(Vec,PetscInt,Vec*[]); 2324bf112e7SSatish Balay EXTERN PetscErrorCode VecDestroyVecs(Vec[],PetscInt); 233dfbe8321SBarry Smith EXTERN PetscErrorCode VecGetPetscMap(Vec,PetscMap*); 2342eac72dbSBarry Smith 235dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideNormAll(Vec,NormType,PetscReal*); 23632dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMaxAll(Vec,PetscInt *,PetscReal *); 23732dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMinAll(Vec,PetscInt *,PetscReal *); 238dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideScaleAll(Vec,PetscScalar*); 2394a560884SBarry Smith 24032dcc486SBarry Smith EXTERN PetscErrorCode VecStrideNorm(Vec,PetscInt,NormType,PetscReal*); 24132dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMax(Vec,PetscInt,PetscInt *,PetscReal *); 24232dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMin(Vec,PetscInt,PetscInt *,PetscReal *); 24332dcc486SBarry Smith EXTERN PetscErrorCode VecStrideScale(Vec,PetscInt,PetscScalar*); 24432dcc486SBarry Smith EXTERN PetscErrorCode VecStrideGather(Vec,PetscInt,Vec,InsertMode); 24532dcc486SBarry Smith EXTERN PetscErrorCode VecStrideScatter(Vec,PetscInt,Vec,InsertMode); 246dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideGatherAll(Vec,Vec*,InsertMode); 247dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideScatterAll(Vec*,Vec,InsertMode); 248d2655a18SBarry Smith 24932dcc486SBarry Smith EXTERN PetscErrorCode VecSetValues(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 250feb25392SBarry Smith EXTERN PetscErrorCode VecGetValues(Vec,PetscInt,const PetscInt[],PetscScalar[]); 251dfbe8321SBarry Smith EXTERN PetscErrorCode VecAssemblyBegin(Vec); 252dfbe8321SBarry Smith EXTERN PetscErrorCode VecAssemblyEnd(Vec); 25332dcc486SBarry Smith EXTERN PetscErrorCode VecStashSetInitialSize(Vec,PetscInt,PetscInt); 254dfbe8321SBarry Smith EXTERN PetscErrorCode VecStashView(Vec,PetscViewer); 25532dcc486SBarry Smith EXTERN PetscErrorCode VecStashGetInfo(Vec,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 25662dc5420SSatish Balay 25732dcc486SBarry Smith extern PetscInt VecSetValue_Row; 2581d73ed98SBarry Smith extern PetscScalar VecSetValue_Value; 25930de9b25SBarry Smith /*MC 26030de9b25SBarry Smith VecSetValue - Set a single entry into a vector. 26130de9b25SBarry Smith 26230de9b25SBarry Smith Synopsis: 263d360dc6fSBarry Smith PetscErrorCode VecSetValue(Vec v,int row,PetscScalar value, InsertMode mode); 26430de9b25SBarry Smith 26530de9b25SBarry Smith Not Collective 26630de9b25SBarry Smith 26730de9b25SBarry Smith Input Parameters: 26830de9b25SBarry Smith + v - the vector 26930de9b25SBarry Smith . row - the row location of the entry 27030de9b25SBarry Smith . value - the value to insert 27130de9b25SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 27230de9b25SBarry Smith 27330de9b25SBarry Smith Notes: 27430de9b25SBarry Smith For efficiency one should use VecSetValues() and set several or 27530de9b25SBarry Smith many values simultaneously if possible. 27630de9b25SBarry Smith 2771d73ed98SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 2781d73ed98SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 2791d73ed98SBarry Smith 2801d73ed98SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 2811d73ed98SBarry Smith 2821d73ed98SBarry Smith Level: beginner 2831d73ed98SBarry Smith 2841d73ed98SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValueLocal() 2851d73ed98SBarry Smith M*/ 286f1144a30SSatish Balay #define VecSetValue(v,i,va,mode) ((VecSetValue_Row = i,VecSetValue_Value = va,0) || VecSetValues(v,1,&VecSetValue_Row,&VecSetValue_Value,mode)) 2871d73ed98SBarry Smith 2881d73ed98SBarry Smith /*MC 2891d73ed98SBarry Smith VecSetValueLocal - Set a single entry into a vector using the local numbering 2901d73ed98SBarry Smith 2911d73ed98SBarry Smith Synopsis: 292d360dc6fSBarry Smith PetscErrorCode VecSetValueLocal(Vec v,int row,PetscScalar value, InsertMode mode); 2931d73ed98SBarry Smith 2941d73ed98SBarry Smith Not Collective 2951d73ed98SBarry Smith 2961d73ed98SBarry Smith Input Parameters: 2971d73ed98SBarry Smith + v - the vector 2981d73ed98SBarry Smith . row - the row location of the entry 2991d73ed98SBarry Smith . value - the value to insert 3001d73ed98SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 3011d73ed98SBarry Smith 3021d73ed98SBarry Smith Notes: 3031d73ed98SBarry Smith For efficiency one should use VecSetValues() and set several or 3041d73ed98SBarry Smith many values simultaneously if possible. 30530de9b25SBarry Smith 30630de9b25SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 30730de9b25SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 30830de9b25SBarry Smith 30930de9b25SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 31030de9b25SBarry Smith 31130de9b25SBarry Smith Level: beginner 31230de9b25SBarry Smith 3131d73ed98SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValue() 31430de9b25SBarry Smith M*/ 315f1144a30SSatish Balay #define VecSetValueLocal(v,i,va,mode) ((VecSetValue_Row = i,VecSetValue_Value = va,0) || VecSetValuesLocal(v,1,&VecSetValue_Row,&VecSetValue_Value,mode)) 31630de9b25SBarry Smith 31732dcc486SBarry Smith EXTERN PetscErrorCode VecSetBlockSize(Vec,PetscInt); 31832dcc486SBarry Smith EXTERN PetscErrorCode VecGetBlockSize(Vec,PetscInt*); 31932dcc486SBarry Smith EXTERN PetscErrorCode VecSetValuesBlocked(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 3208ed539a5SBarry Smith 321fd487807SMatthew Knepley /* Dynamic creation and loading functions */ 322fd487807SMatthew Knepley extern PetscFList VecList; 323d772e1d7SMatthew Knepley extern PetscTruth VecRegisterAllCalled; 324dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetType(Vec, const VecType); 325dfbe8321SBarry Smith EXTERN PetscErrorCode VecGetType(Vec, VecType *); 3266849ba73SBarry Smith EXTERN PetscErrorCode VecRegister(const char[],const char[],const char[],PetscErrorCode (*)(Vec)); 327dfbe8321SBarry Smith EXTERN PetscErrorCode VecRegisterAll(const char []); 328dfbe8321SBarry Smith EXTERN PetscErrorCode VecRegisterDestroy(void); 32930de9b25SBarry Smith 33030de9b25SBarry Smith /*MC 33130de9b25SBarry Smith VecRegisterDynamic - Adds a new vector component implementation 33230de9b25SBarry Smith 33330de9b25SBarry Smith Synopsis: 334d360dc6fSBarry Smith PetscErrorCode VecRegisterDynamic(char *name, char *path, char *func_name, PetscErrorCode (*create_func)(Vec)) 33530de9b25SBarry Smith 33630de9b25SBarry Smith Not Collective 33730de9b25SBarry Smith 33830de9b25SBarry Smith Input Parameters: 33930de9b25SBarry Smith + name - The name of a new user-defined creation routine 34030de9b25SBarry Smith . path - The path (either absolute or relative) of the library containing this routine 34130de9b25SBarry Smith . func_name - The name of routine to create method context 34230de9b25SBarry Smith - create_func - The creation routine itself 34330de9b25SBarry Smith 34430de9b25SBarry Smith Notes: 34530de9b25SBarry Smith VecRegisterDynamic() may be called multiple times to add several user-defined vectors 34630de9b25SBarry Smith 34730de9b25SBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 34830de9b25SBarry Smith 34930de9b25SBarry Smith Sample usage: 35030de9b25SBarry Smith .vb 35130de9b25SBarry Smith VecRegisterDynamic("my_vec","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyVectorCreate", MyVectorCreate); 35230de9b25SBarry Smith .ve 35330de9b25SBarry Smith 35430de9b25SBarry Smith Then, your vector type can be chosen with the procedural interface via 35530de9b25SBarry Smith .vb 35630de9b25SBarry Smith VecCreate(MPI_Comm, Vec *); 35730de9b25SBarry Smith VecSetType(Vec,"my_vector_name"); 35830de9b25SBarry Smith .ve 35930de9b25SBarry Smith or at runtime via the option 36030de9b25SBarry Smith .vb 36130de9b25SBarry Smith -vec_type my_vector_name 36230de9b25SBarry Smith .ve 36330de9b25SBarry Smith 364ab901514SBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 36530de9b25SBarry Smith If your function is not being put into a shared library then use VecRegister() instead 36630de9b25SBarry Smith 36730de9b25SBarry Smith Level: advanced 36830de9b25SBarry Smith 36930de9b25SBarry Smith .keywords: Vec, register 37030de9b25SBarry Smith .seealso: VecRegisterAll(), VecRegisterDestroy(), VecRegister() 37130de9b25SBarry Smith M*/ 372aa482453SBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 373f1af5d2fSBarry Smith #define VecRegisterDynamic(a,b,c,d) VecRegister(a,b,c,0) 37488d459dfSBarry Smith #else 375f1af5d2fSBarry Smith #define VecRegisterDynamic(a,b,c,d) VecRegister(a,b,c,d) 37688d459dfSBarry Smith #endif 37788d459dfSBarry Smith 37809321671SBarry Smith 379dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCreate(Vec,IS,Vec,IS,VecScatter *); 380dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterPostRecvs(Vec,Vec,InsertMode,ScatterMode,VecScatter); 381dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterBegin(Vec,Vec,InsertMode,ScatterMode,VecScatter); 382dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterEnd(Vec,Vec,InsertMode,ScatterMode,VecScatter); 383dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterDestroy(VecScatter); 384dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCopy(VecScatter,VecScatter *); 385dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterView(VecScatter,PetscViewer); 38632dcc486SBarry Smith EXTERN PetscErrorCode VecScatterRemap(VecScatter,PetscInt *,PetscInt*); 387a5ff213dSBarry Smith EXTERN PetscErrorCode VecScatterGetMerged(VecScatter,PetscTruth*); 3882195c698SBarry Smith 389dfbe8321SBarry Smith EXTERN PetscErrorCode VecGetArray_Private(Vec,PetscScalar*[]); 390dfbe8321SBarry Smith EXTERN PetscErrorCode VecRestoreArray_Private(Vec,PetscScalar*[]); 39132dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 39232dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 39332dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 39432dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 39532dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 39632dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 39732dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 39832dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 399ab360428SBarry Smith 400dfbe8321SBarry Smith EXTERN PetscErrorCode VecPlaceArray(Vec,const PetscScalar[]); 401dfbe8321SBarry Smith EXTERN PetscErrorCode VecResetArray(Vec); 402dfbe8321SBarry Smith EXTERN PetscErrorCode VecReplaceArray(Vec,const PetscScalar[]); 40332dcc486SBarry Smith EXTERN PetscErrorCode VecGetArrays(const Vec[],PetscInt,PetscScalar**[]); 40432dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArrays(const Vec[],PetscInt,PetscScalar**[]); 40584cb2905SBarry Smith 406dfbe8321SBarry Smith EXTERN PetscErrorCode VecValid(Vec,PetscTruth*); 407dfbe8321SBarry Smith EXTERN PetscErrorCode VecView(Vec,PetscViewer); 408dfbe8321SBarry Smith EXTERN PetscErrorCode VecViewFromOptions(Vec, char *); 409dfbe8321SBarry Smith EXTERN PetscErrorCode VecEqual(Vec,Vec,PetscTruth*); 410dfbe8321SBarry Smith EXTERN PetscErrorCode VecLoad(PetscViewer,const VecType,Vec*); 411dfbe8321SBarry Smith EXTERN PetscErrorCode VecLoadIntoVector(PetscViewer,Vec); 4128ed539a5SBarry Smith 41332dcc486SBarry Smith EXTERN PetscErrorCode VecGetSize(Vec,PetscInt*); 41432dcc486SBarry Smith EXTERN PetscErrorCode VecGetLocalSize(Vec,PetscInt*); 41532dcc486SBarry Smith EXTERN PetscErrorCode VecGetOwnershipRange(Vec,PetscInt*,PetscInt*); 4168ed539a5SBarry Smith 417dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping); 41832dcc486SBarry Smith EXTERN PetscErrorCode VecSetValuesLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 419dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetLocalToGlobalMappingBlock(Vec,ISLocalToGlobalMapping); 42032dcc486SBarry Smith EXTERN PetscErrorCode VecSetValuesBlockedLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 42190f02eecSBarry Smith 422dfbe8321SBarry Smith EXTERN PetscErrorCode VecDotBegin(Vec,Vec,PetscScalar *); 423dfbe8321SBarry Smith EXTERN PetscErrorCode VecDotEnd(Vec,Vec,PetscScalar *); 424dfbe8321SBarry Smith EXTERN PetscErrorCode VecTDotBegin(Vec,Vec,PetscScalar *); 425dfbe8321SBarry Smith EXTERN PetscErrorCode VecTDotEnd(Vec,Vec,PetscScalar *); 426dfbe8321SBarry Smith EXTERN PetscErrorCode VecNormBegin(Vec,NormType,PetscReal *); 427dfbe8321SBarry Smith EXTERN PetscErrorCode VecNormEnd(Vec,NormType,PetscReal *); 428d3c178dbSBarry Smith 429fdbc4c26SBarry Smith typedef enum {VEC_IGNORE_OFF_PROC_ENTRIES,VEC_TREAT_OFF_PROC_ENTRIES} VecOption; 430dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetOption(Vec,VecOption); 43190f02eecSBarry Smith 432ebe3b25bSBarry Smith /* 433ebe3b25bSBarry Smith Expose VecGetArray()/VecRestoreArray() to users. Allows this to work without any function 434ebe3b25bSBarry Smith call overhead on any 'native' Vecs. 435ebe3b25bSBarry Smith */ 4363c94ec11SBarry Smith #include "vecimpl.h" 437ebe3b25bSBarry Smith 438dfbe8321SBarry Smith EXTERN PetscErrorCode VecContourScale(Vec,PetscReal,PetscReal); 439522c5e43SBarry Smith 44015091d37SBarry Smith /* 44115091d37SBarry Smith These numbers need to match the entries in 4423c94ec11SBarry Smith the function table in vecimpl.h 44315091d37SBarry Smith */ 444b1bcba4aSBarry Smith typedef enum { VECOP_VIEW = 32, 445b1bcba4aSBarry Smith VECOP_LOADINTOVECTOR = 38 44615091d37SBarry Smith } VecOperation; 447dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetOperation(Vec,VecOperation,void(*)(void)); 448b19c1e4cSBarry Smith 449e182c471SBarry Smith /* 450e182c471SBarry Smith Routines for dealing with ghosted vectors: 451e182c471SBarry Smith vectors with ghost elements at the end of the array. 452e182c471SBarry Smith */ 45332dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhost(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 45432dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhostWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 45532dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhostBlock(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 45632dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhostBlockWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 457dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostGetLocalForm(Vec,Vec*); 458dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostRestoreLocalForm(Vec,Vec*); 459dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostUpdateBegin(Vec,InsertMode,ScatterMode); 460dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostUpdateEnd(Vec,InsertMode,ScatterMode); 461e182c471SBarry Smith 462dfbe8321SBarry Smith EXTERN PetscErrorCode VecConjugate(Vec); 46334233285SBarry Smith 464dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCreateToAll(Vec,VecScatter*,Vec*); 465dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCreateToZero(Vec,VecScatter*,Vec*); 466bba1ac68SSatish Balay 467dfbe8321SBarry Smith EXTERN PetscErrorCode PetscViewerMathematicaGetVector(PetscViewer, Vec); 468dfbe8321SBarry Smith EXTERN PetscErrorCode PetscViewerMathematicaPutVector(PetscViewer, Vec); 4697dbadf16SMatthew Knepley 470d59c15a7SBarry Smith /*S 471d59c15a7SBarry Smith Vecs - Collection of vectors where the data for the vectors is stored in 472d59c15a7SBarry Smith one continquous memory 473d59c15a7SBarry Smith 474d59c15a7SBarry Smith Level: advanced 475d59c15a7SBarry Smith 476d59c15a7SBarry Smith Notes: 477d59c15a7SBarry Smith Temporary construct for handling multiply right hand side solves 478d59c15a7SBarry Smith 479d59c15a7SBarry Smith This is faked by storing a single vector that has enough array space for 480d59c15a7SBarry Smith n vectors 481d59c15a7SBarry Smith 482d59c15a7SBarry Smith Concepts: parallel decomposition 483d59c15a7SBarry Smith 484d59c15a7SBarry Smith S*/ 48532dcc486SBarry Smith struct _p_Vecs {PetscInt n; Vec v;}; 486d59c15a7SBarry Smith typedef struct _p_Vecs* Vecs; 487d59c15a7SBarry Smith #define VecsDestroy(x) (VecDestroy((x)->v) || PetscFree(x)) 488d59c15a7SBarry Smith #define VecsCreateSeq(comm,p,m,x) (PetscNew(struct _p_Vecs,x) || VecCreateSeq(comm,p*m,&(*(x))->v) || (-1 == ((*(x))->n = (m)))) 489d59c15a7SBarry Smith #define VecsCreateSeqWithArray(comm,p,m,a,x) (PetscNew(struct _p_Vecs,x) || VecCreateSeqWithArray(comm,p*m,a,&(*(x))->v) || (-1 == ((*(x))->n = (m)))) 490d59c15a7SBarry Smith #define VecsDuplicate(x,y) (PetscNew(struct _p_Vecs,y) || VecDuplicate(x->v,&(*(y))->v) || (-1 == ((*(y))->n = (x)->n))) 491e9fa29b7SSatish Balay 492e9fa29b7SSatish Balay 493e9fa29b7SSatish Balay PETSC_EXTERN_CXX_END 4942eac72dbSBarry Smith #endif 495