12eac72dbSBarry Smith /* 237f753daSBarry Smith Defines the vector component of PETSc. Vectors generally represent 337f753daSBarry Smith degrees of freedom for finite element/finite difference functions 484cb2905SBarry Smith on a grid. They have more mathematical structure then simple arrays. 52eac72dbSBarry Smith */ 62eac72dbSBarry Smith 70a835dfdSSatish Balay #ifndef __PETSCVEC_H 80a835dfdSSatish Balay #define __PETSCVEC_H 90a835dfdSSatish Balay #include "petscis.h" 100a835dfdSSatish Balay #include "petscsys.h" 11e9fa29b7SSatish Balay PETSC_EXTERN_CXX_BEGIN 122eac72dbSBarry Smith 1309321671SBarry Smith /*S 148a124369SBarry Smith PetscMap - Abstract PETSc object that defines the layout of vector and 15013c094aSBarry Smith matrices across processors 1609321671SBarry Smith 1709321671SBarry Smith Level: advanced 1809321671SBarry Smith 1909321671SBarry Smith Notes: 2009321671SBarry Smith Does not play a role in the PETSc design, can be ignored 2109321671SBarry Smith 2209321671SBarry Smith Concepts: parallel decomposition 2309321671SBarry Smith 248a124369SBarry Smith .seealso: PetscMapCreateMPI() 2509321671SBarry Smith S*/ 268a124369SBarry Smith typedef struct _p_PetscMap* PetscMap; 2709321671SBarry Smith 28d772e1d7SMatthew Knepley #define MAP_SEQ "seq" 29d772e1d7SMatthew Knepley #define MAP_MPI "mpi" 3049773a63SBarry Smith #define PetscMapType char* 31d772e1d7SMatthew Knepley 32d772e1d7SMatthew Knepley /* Logging support */ 336849ba73SBarry Smith extern PetscCookie MAP_COOKIE; 34d772e1d7SMatthew Knepley 35dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapCreate(MPI_Comm,PetscMap*); 3632dcc486SBarry Smith EXTERN PetscErrorCode PetscMapCreateMPI(MPI_Comm,PetscInt,PetscInt,PetscMap*); 37dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapSetFromOptions(PetscMap); 38dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapPrintHelp(PetscMap); 39dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapDestroy(PetscMap); 40d772e1d7SMatthew Knepley 4132dcc486SBarry Smith EXTERN PetscErrorCode PetscMapSetLocalSize(PetscMap,PetscInt); 4232dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetLocalSize(PetscMap,PetscInt *); 4332dcc486SBarry Smith EXTERN PetscErrorCode PetscMapSetSize(PetscMap,PetscInt); 4432dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetSize(PetscMap,PetscInt *); 4532dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetLocalRange(PetscMap,PetscInt *,PetscInt *); 4632dcc486SBarry Smith EXTERN PetscErrorCode PetscMapGetGlobalRange(PetscMap,PetscInt *[]); 47d772e1d7SMatthew Knepley 48d772e1d7SMatthew Knepley /* Dynamic creation and loading functions */ 49d772e1d7SMatthew Knepley extern PetscFList PetscMapList; 50d772e1d7SMatthew Knepley extern PetscTruth PetscMapRegisterAllCalled; 51dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapSetType(PetscMap, const PetscMapType); 52dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapGetType(PetscMap, PetscMapType *); 536849ba73SBarry Smith EXTERN PetscErrorCode PetscMapRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscMap)); 54dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapRegisterAll(const char []); 55dfbe8321SBarry Smith EXTERN PetscErrorCode PetscMapRegisterDestroy(void); 56d772e1d7SMatthew Knepley #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 57d772e1d7SMatthew Knepley #define PetscMapRegisterDynamic(a,b,c,d) PetscMapRegister(a,b,c,0) 58d772e1d7SMatthew Knepley #else 59d772e1d7SMatthew Knepley #define PetscMapRegisterDynamic(a,b,c,d) PetscMapRegister(a,b,c,d) 60d772e1d7SMatthew Knepley #endif 61d772e1d7SMatthew Knepley 6209321671SBarry Smith /*S 6309321671SBarry Smith Vec - Abstract PETSc vector object 6409321671SBarry Smith 6509321671SBarry Smith Level: beginner 6609321671SBarry Smith 6709321671SBarry Smith Concepts: field variables, unknowns, arrays 6809321671SBarry Smith 6909321671SBarry Smith .seealso: VecCreate(), VecType, VecSetType() 7009321671SBarry Smith S*/ 71f09e8eb9SSatish Balay typedef struct _p_Vec* Vec; 7209321671SBarry Smith 7309321671SBarry Smith /*S 7409321671SBarry Smith VecScatter - Object used to manage communication of data 7509321671SBarry Smith between vectors in parallel. Manages both scatters and gathers 7609321671SBarry Smith 7709321671SBarry Smith Level: beginner 7809321671SBarry Smith 7909321671SBarry Smith Concepts: scatter 8009321671SBarry Smith 8109321671SBarry Smith .seealso: VecScatterCreate(), VecScatterBegin(), VecScatterEnd() 8209321671SBarry Smith S*/ 83f09e8eb9SSatish Balay typedef struct _p_VecScatter* VecScatter; 8409321671SBarry Smith 8509321671SBarry Smith /*E 8609321671SBarry Smith VecType - String with the name of a PETSc vector or the creation function 8709321671SBarry Smith with an optional dynamic library name, for example 8809321671SBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myveccreate() 8909321671SBarry Smith 9009321671SBarry Smith Level: beginner 9109321671SBarry Smith 9209321671SBarry Smith .seealso: VecSetType(), Vec 9309321671SBarry Smith E*/ 940676abe4SMatthew Knepley #define VECSEQ "seq" 950676abe4SMatthew Knepley #define VECMPI "mpi" 960676abe4SMatthew Knepley #define VECFETI "feti" 970676abe4SMatthew Knepley #define VECSHARED "shared" 9849773a63SBarry Smith #define VecType char* 992eac72dbSBarry Smith 100fd487807SMatthew Knepley /* Logging support */ 101552e946dSBarry Smith #define VEC_FILE_COOKIE 1211214 1026849ba73SBarry Smith extern PetscCookie VEC_COOKIE, VEC_SCATTER_COOKIE; 1036849ba73SBarry Smith extern PetscEvent VEC_View, VEC_Max, VEC_Min, VEC_DotBarrier, VEC_Dot, VEC_MDotBarrier, VEC_MDot, VEC_TDot, VEC_MTDot; 1046849ba73SBarry Smith extern PetscEvent VEC_Norm, VEC_Normalize, VEC_Scale, VEC_Copy, VEC_Set, VEC_AXPY, VEC_AYPX, VEC_WAXPY, VEC_MAXPY; 1056849ba73SBarry Smith extern PetscEvent VEC_AssemblyEnd, VEC_PointwiseMult, VEC_SetValues, VEC_Load, VEC_ScatterBarrier, VEC_ScatterBegin, VEC_ScatterEnd; 1066849ba73SBarry Smith extern PetscEvent VEC_SetRandom, VEC_ReduceArithmetic, VEC_ReduceBarrier, VEC_ReduceCommunication; 1076849ba73SBarry Smith extern PetscEvent VEC_Swap, VEC_AssemblyBegin, VEC_NormBarrier; 1088ba1e511SMatthew Knepley 109dfbe8321SBarry Smith EXTERN PetscErrorCode VecInitializePackage(char *); 110fd487807SMatthew Knepley 111dfbe8321SBarry Smith EXTERN PetscErrorCode VecCreate(MPI_Comm,Vec *); 11232dcc486SBarry Smith EXTERN PetscErrorCode VecCreateSeq(MPI_Comm,PetscInt,Vec*); 11332dcc486SBarry Smith EXTERN PetscErrorCode VecCreateMPI(MPI_Comm,PetscInt,PetscInt,Vec*); 11432dcc486SBarry Smith EXTERN PetscErrorCode VecCreateSeqWithArray(MPI_Comm,PetscInt,const PetscScalar[],Vec*); 11532dcc486SBarry Smith EXTERN PetscErrorCode VecCreateMPIWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar[],Vec*); 11632dcc486SBarry Smith EXTERN PetscErrorCode VecCreateShared(MPI_Comm,PetscInt,PetscInt,Vec*); 117dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetFromOptions(Vec); 118dfbe8321SBarry Smith EXTERN PetscErrorCode VecPrintHelp(Vec); 119dfbe8321SBarry Smith EXTERN PetscErrorCode VecDestroy(Vec); 1204b0e389bSBarry Smith 12132dcc486SBarry Smith EXTERN PetscErrorCode VecSetSizes(Vec,PetscInt,PetscInt); 122fd487807SMatthew Knepley 123dfbe8321SBarry Smith EXTERN PetscErrorCode VecDot(Vec,Vec,PetscScalar*); 124dfbe8321SBarry Smith EXTERN PetscErrorCode VecTDot(Vec,Vec,PetscScalar*); 12532dcc486SBarry Smith EXTERN PetscErrorCode VecMDot(PetscInt,Vec,const Vec[],PetscScalar*); 12632dcc486SBarry Smith EXTERN PetscErrorCode VecMTDot(PetscInt,Vec,const Vec[],PetscScalar*); 127cddf8d76SBarry Smith 12809321671SBarry Smith /*E 12909321671SBarry Smith NormType - determines what type of norm to compute 13009321671SBarry Smith 13109321671SBarry Smith Level: beginner 13209321671SBarry Smith 13309321671SBarry Smith .seealso: VecNorm(), VecNormBegin(), VecNormEnd(), MatNorm() 13409321671SBarry Smith E*/ 13593c39befSBarry Smith typedef enum {NORM_1=1,NORM_2=2,NORM_FROBENIUS=3,NORM_INFINITY=4,NORM_1_AND_2=5} NormType; 136cddf8d76SBarry Smith #define NORM_MAX NORM_INFINITY 13709321671SBarry Smith 1389b250c83SBarry Smith /*MC 1399b250c83SBarry Smith NORM_1 - the one norm, ||v|| = sum_i | v_i |. ||A|| = max_j || v_*j ||, maximum column sum 1409b250c83SBarry Smith 1419b250c83SBarry Smith Level: beginner 1429b250c83SBarry Smith 1439b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_2, NORM_FROBENIUS, 1449b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1459b250c83SBarry Smith 1469b250c83SBarry Smith M*/ 1479b250c83SBarry Smith 1489b250c83SBarry Smith /*MC 1499b250c83SBarry Smith NORM_2 - the two norm, ||v|| = sqrt(sum_i (v_i)^2) (vectors only) 1509b250c83SBarry Smith 1519b250c83SBarry Smith Level: beginner 1529b250c83SBarry Smith 1539b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_FROBENIUS, 1549b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1559b250c83SBarry Smith 1569b250c83SBarry Smith M*/ 1579b250c83SBarry Smith 1589b250c83SBarry Smith /*MC 1599b250c83SBarry Smith NORM_FROBENIUS - ||A|| = sqrt(sum_ij (A_ij)^2), same as NORM_2 for vectors 1609b250c83SBarry Smith 1619b250c83SBarry Smith Level: beginner 1629b250c83SBarry Smith 1639b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1649b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1659b250c83SBarry Smith 1669b250c83SBarry Smith M*/ 1679b250c83SBarry Smith 1689b250c83SBarry Smith /*MC 1699b250c83SBarry Smith NORM_INFINITY - ||v|| = max_i |v_i|. ||A|| = max_i || v_i* ||, maximum row sum 1709b250c83SBarry Smith 1719b250c83SBarry Smith Level: beginner 1729b250c83SBarry Smith 1739b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1749b250c83SBarry Smith NORM_FROBINIUS, NORM_1_AND_2 1759b250c83SBarry Smith 1769b250c83SBarry Smith M*/ 1779b250c83SBarry Smith 1789b250c83SBarry Smith /*MC 1799b250c83SBarry Smith NORM_1_AND_2 - computes both the 1 and 2 norm of a vector 1809b250c83SBarry Smith 1819b250c83SBarry Smith Level: beginner 1829b250c83SBarry Smith 1839b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1849b250c83SBarry Smith NORM_FROBINIUS, NORM_INFINITY 1859b250c83SBarry Smith 1869b250c83SBarry Smith M*/ 1879b250c83SBarry Smith 1889b250c83SBarry Smith /*MC 1899b250c83SBarry Smith NORM_MAX - see NORM_INFINITY 1909b250c83SBarry Smith 191d41222bbSBarry Smith Level: beginner 192d41222bbSBarry Smith 1939b250c83SBarry Smith M*/ 1949b250c83SBarry Smith 195dfbe8321SBarry Smith EXTERN PetscErrorCode VecNorm(Vec,NormType,PetscReal *); 19632dcc486SBarry Smith EXTERN PetscErrorCode VecNormComposedDataID(NormType,PetscInt*); 197dfbe8321SBarry Smith EXTERN PetscErrorCode VecNormalize(Vec,PetscReal *); 198dfbe8321SBarry Smith EXTERN PetscErrorCode VecSum(Vec,PetscScalar*); 19932dcc486SBarry Smith EXTERN PetscErrorCode VecMax(Vec,PetscInt*,PetscReal *); 20032dcc486SBarry Smith EXTERN PetscErrorCode VecMin(Vec,PetscInt*,PetscReal *); 201dfbe8321SBarry Smith EXTERN PetscErrorCode VecScale(const PetscScalar *a,Vec v); 202dfbe8321SBarry Smith EXTERN PetscErrorCode VecCopy(Vec,Vec); 203dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetRandom(PetscRandom,Vec); 204dfbe8321SBarry Smith EXTERN PetscErrorCode VecSet(const PetscScalar*,Vec); 205dfbe8321SBarry Smith EXTERN PetscErrorCode VecSwap(Vec,Vec); 206dfbe8321SBarry Smith EXTERN PetscErrorCode VecAXPY(const PetscScalar*,Vec,Vec); 207dfbe8321SBarry Smith EXTERN PetscErrorCode VecAXPBY(const PetscScalar*,const PetscScalar *,Vec,Vec); 20832dcc486SBarry Smith EXTERN PetscErrorCode VecMAXPY(PetscInt,const PetscScalar*,Vec,Vec*); 209dfbe8321SBarry Smith EXTERN PetscErrorCode VecAYPX(const PetscScalar*,Vec,Vec); 210dfbe8321SBarry Smith EXTERN PetscErrorCode VecWAXPY(const PetscScalar*,Vec,Vec,Vec); 211fa5fa523SBarry Smith EXTERN PetscErrorCode VecPointwiseMax(Vec,Vec,Vec); 212fa5fa523SBarry Smith EXTERN PetscErrorCode VecPointwiseMaxAbs(Vec,Vec,Vec); 213fa5fa523SBarry Smith EXTERN PetscErrorCode VecPointwiseMin(Vec,Vec,Vec); 214dfbe8321SBarry Smith EXTERN PetscErrorCode VecPointwiseMult(Vec,Vec,Vec); 215dfbe8321SBarry Smith EXTERN PetscErrorCode VecPointwiseDivide(Vec,Vec,Vec); 216dfbe8321SBarry Smith EXTERN PetscErrorCode VecMaxPointwiseDivide(Vec,Vec,PetscReal*); 217dfbe8321SBarry Smith EXTERN PetscErrorCode VecShift(const PetscScalar*,Vec); 218dfbe8321SBarry Smith EXTERN PetscErrorCode VecReciprocal(Vec); 219dfbe8321SBarry Smith EXTERN PetscErrorCode VecPermute(Vec, IS, PetscTruth); 220dfbe8321SBarry Smith EXTERN PetscErrorCode VecSqrt(Vec); 221dfbe8321SBarry Smith EXTERN PetscErrorCode VecAbs(Vec); 222dfbe8321SBarry Smith EXTERN PetscErrorCode VecDuplicate(Vec,Vec*); 22332dcc486SBarry Smith EXTERN PetscErrorCode VecDuplicateVecs(Vec,PetscInt,Vec*[]); 2244bf112e7SSatish Balay EXTERN PetscErrorCode VecDestroyVecs(Vec[],PetscInt); 225dfbe8321SBarry Smith EXTERN PetscErrorCode VecGetPetscMap(Vec,PetscMap*); 2262eac72dbSBarry Smith 227dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideNormAll(Vec,NormType,PetscReal*); 22832dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMaxAll(Vec,PetscInt *,PetscReal *); 22932dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMinAll(Vec,PetscInt *,PetscReal *); 230dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideScaleAll(Vec,PetscScalar*); 2314a560884SBarry Smith 23232dcc486SBarry Smith EXTERN PetscErrorCode VecStrideNorm(Vec,PetscInt,NormType,PetscReal*); 23332dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMax(Vec,PetscInt,PetscInt *,PetscReal *); 23432dcc486SBarry Smith EXTERN PetscErrorCode VecStrideMin(Vec,PetscInt,PetscInt *,PetscReal *); 23532dcc486SBarry Smith EXTERN PetscErrorCode VecStrideScale(Vec,PetscInt,PetscScalar*); 23632dcc486SBarry Smith EXTERN PetscErrorCode VecStrideGather(Vec,PetscInt,Vec,InsertMode); 23732dcc486SBarry Smith EXTERN PetscErrorCode VecStrideScatter(Vec,PetscInt,Vec,InsertMode); 238dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideGatherAll(Vec,Vec*,InsertMode); 239dfbe8321SBarry Smith EXTERN PetscErrorCode VecStrideScatterAll(Vec*,Vec,InsertMode); 240d2655a18SBarry Smith 24132dcc486SBarry Smith EXTERN PetscErrorCode VecSetValues(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 242feb25392SBarry Smith EXTERN PetscErrorCode VecGetValues(Vec,PetscInt,const PetscInt[],PetscScalar[]); 243dfbe8321SBarry Smith EXTERN PetscErrorCode VecAssemblyBegin(Vec); 244dfbe8321SBarry Smith EXTERN PetscErrorCode VecAssemblyEnd(Vec); 24532dcc486SBarry Smith EXTERN PetscErrorCode VecStashSetInitialSize(Vec,PetscInt,PetscInt); 246dfbe8321SBarry Smith EXTERN PetscErrorCode VecStashView(Vec,PetscViewer); 24732dcc486SBarry Smith EXTERN PetscErrorCode VecStashGetInfo(Vec,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 24862dc5420SSatish Balay 24932dcc486SBarry Smith extern PetscInt VecSetValue_Row; 2501d73ed98SBarry Smith extern PetscScalar VecSetValue_Value; 25130de9b25SBarry Smith /*MC 25230de9b25SBarry Smith VecSetValue - Set a single entry into a vector. 25330de9b25SBarry Smith 25430de9b25SBarry Smith Synopsis: 255d360dc6fSBarry Smith PetscErrorCode VecSetValue(Vec v,int row,PetscScalar value, InsertMode mode); 25630de9b25SBarry Smith 25730de9b25SBarry Smith Not Collective 25830de9b25SBarry Smith 25930de9b25SBarry Smith Input Parameters: 26030de9b25SBarry Smith + v - the vector 26130de9b25SBarry Smith . row - the row location of the entry 26230de9b25SBarry Smith . value - the value to insert 26330de9b25SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 26430de9b25SBarry Smith 26530de9b25SBarry Smith Notes: 26630de9b25SBarry Smith For efficiency one should use VecSetValues() and set several or 26730de9b25SBarry Smith many values simultaneously if possible. 26830de9b25SBarry Smith 2691d73ed98SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 2701d73ed98SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 2711d73ed98SBarry Smith 2721d73ed98SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 2731d73ed98SBarry Smith 2741d73ed98SBarry Smith Level: beginner 2751d73ed98SBarry Smith 2761d73ed98SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValueLocal() 2771d73ed98SBarry Smith M*/ 278f1144a30SSatish Balay #define VecSetValue(v,i,va,mode) ((VecSetValue_Row = i,VecSetValue_Value = va,0) || VecSetValues(v,1,&VecSetValue_Row,&VecSetValue_Value,mode)) 2791d73ed98SBarry Smith 2801d73ed98SBarry Smith /*MC 2811d73ed98SBarry Smith VecSetValueLocal - Set a single entry into a vector using the local numbering 2821d73ed98SBarry Smith 2831d73ed98SBarry Smith Synopsis: 284d360dc6fSBarry Smith PetscErrorCode VecSetValueLocal(Vec v,int row,PetscScalar value, InsertMode mode); 2851d73ed98SBarry Smith 2861d73ed98SBarry Smith Not Collective 2871d73ed98SBarry Smith 2881d73ed98SBarry Smith Input Parameters: 2891d73ed98SBarry Smith + v - the vector 2901d73ed98SBarry Smith . row - the row location of the entry 2911d73ed98SBarry Smith . value - the value to insert 2921d73ed98SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 2931d73ed98SBarry Smith 2941d73ed98SBarry Smith Notes: 2951d73ed98SBarry Smith For efficiency one should use VecSetValues() and set several or 2961d73ed98SBarry Smith many values simultaneously if possible. 29730de9b25SBarry Smith 29830de9b25SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 29930de9b25SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 30030de9b25SBarry Smith 30130de9b25SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 30230de9b25SBarry Smith 30330de9b25SBarry Smith Level: beginner 30430de9b25SBarry Smith 3051d73ed98SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValue() 30630de9b25SBarry Smith M*/ 307f1144a30SSatish Balay #define VecSetValueLocal(v,i,va,mode) ((VecSetValue_Row = i,VecSetValue_Value = va,0) || VecSetValuesLocal(v,1,&VecSetValue_Row,&VecSetValue_Value,mode)) 30830de9b25SBarry Smith 30932dcc486SBarry Smith EXTERN PetscErrorCode VecSetBlockSize(Vec,PetscInt); 31032dcc486SBarry Smith EXTERN PetscErrorCode VecGetBlockSize(Vec,PetscInt*); 31132dcc486SBarry Smith EXTERN PetscErrorCode VecSetValuesBlocked(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 3128ed539a5SBarry Smith 313fd487807SMatthew Knepley /* Dynamic creation and loading functions */ 314fd487807SMatthew Knepley extern PetscFList VecList; 315d772e1d7SMatthew Knepley extern PetscTruth VecRegisterAllCalled; 316dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetType(Vec, const VecType); 317dfbe8321SBarry Smith EXTERN PetscErrorCode VecGetType(Vec, VecType *); 3186849ba73SBarry Smith EXTERN PetscErrorCode VecRegister(const char[],const char[],const char[],PetscErrorCode (*)(Vec)); 319dfbe8321SBarry Smith EXTERN PetscErrorCode VecRegisterAll(const char []); 320dfbe8321SBarry Smith EXTERN PetscErrorCode VecRegisterDestroy(void); 32130de9b25SBarry Smith 32230de9b25SBarry Smith /*MC 32330de9b25SBarry Smith VecRegisterDynamic - Adds a new vector component implementation 32430de9b25SBarry Smith 32530de9b25SBarry Smith Synopsis: 326d360dc6fSBarry Smith PetscErrorCode VecRegisterDynamic(char *name, char *path, char *func_name, PetscErrorCode (*create_func)(Vec)) 32730de9b25SBarry Smith 32830de9b25SBarry Smith Not Collective 32930de9b25SBarry Smith 33030de9b25SBarry Smith Input Parameters: 33130de9b25SBarry Smith + name - The name of a new user-defined creation routine 33230de9b25SBarry Smith . path - The path (either absolute or relative) of the library containing this routine 33330de9b25SBarry Smith . func_name - The name of routine to create method context 33430de9b25SBarry Smith - create_func - The creation routine itself 33530de9b25SBarry Smith 33630de9b25SBarry Smith Notes: 33730de9b25SBarry Smith VecRegisterDynamic() may be called multiple times to add several user-defined vectors 33830de9b25SBarry Smith 33930de9b25SBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 34030de9b25SBarry Smith 34130de9b25SBarry Smith Sample usage: 34230de9b25SBarry Smith .vb 34330de9b25SBarry Smith VecRegisterDynamic("my_vec","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyVectorCreate", MyVectorCreate); 34430de9b25SBarry Smith .ve 34530de9b25SBarry Smith 34630de9b25SBarry Smith Then, your vector type can be chosen with the procedural interface via 34730de9b25SBarry Smith .vb 34830de9b25SBarry Smith VecCreate(MPI_Comm, Vec *); 34930de9b25SBarry Smith VecSetType(Vec,"my_vector_name"); 35030de9b25SBarry Smith .ve 35130de9b25SBarry Smith or at runtime via the option 35230de9b25SBarry Smith .vb 35330de9b25SBarry Smith -vec_type my_vector_name 35430de9b25SBarry Smith .ve 35530de9b25SBarry Smith 356ab901514SBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 35730de9b25SBarry Smith If your function is not being put into a shared library then use VecRegister() instead 35830de9b25SBarry Smith 35930de9b25SBarry Smith Level: advanced 36030de9b25SBarry Smith 36130de9b25SBarry Smith .keywords: Vec, register 36230de9b25SBarry Smith .seealso: VecRegisterAll(), VecRegisterDestroy(), VecRegister() 36330de9b25SBarry Smith M*/ 364aa482453SBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 365f1af5d2fSBarry Smith #define VecRegisterDynamic(a,b,c,d) VecRegister(a,b,c,0) 36688d459dfSBarry Smith #else 367f1af5d2fSBarry Smith #define VecRegisterDynamic(a,b,c,d) VecRegister(a,b,c,d) 36888d459dfSBarry Smith #endif 36988d459dfSBarry Smith 37009321671SBarry Smith 371dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCreate(Vec,IS,Vec,IS,VecScatter *); 372dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterPostRecvs(Vec,Vec,InsertMode,ScatterMode,VecScatter); 373dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterBegin(Vec,Vec,InsertMode,ScatterMode,VecScatter); 374dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterEnd(Vec,Vec,InsertMode,ScatterMode,VecScatter); 375dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterDestroy(VecScatter); 376dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCopy(VecScatter,VecScatter *); 377dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterView(VecScatter,PetscViewer); 37832dcc486SBarry Smith EXTERN PetscErrorCode VecScatterRemap(VecScatter,PetscInt *,PetscInt*); 379*a5ff213dSBarry Smith EXTERN PetscErrorCode VecScatterGetMerged(VecScatter,PetscTruth*); 3802195c698SBarry Smith 381dfbe8321SBarry Smith EXTERN PetscErrorCode VecGetArray_Private(Vec,PetscScalar*[]); 382dfbe8321SBarry Smith EXTERN PetscErrorCode VecRestoreArray_Private(Vec,PetscScalar*[]); 38332dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 38432dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 38532dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 38632dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 38732dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 38832dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 38932dcc486SBarry Smith EXTERN PetscErrorCode VecGetArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 39032dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 391ab360428SBarry Smith 392dfbe8321SBarry Smith EXTERN PetscErrorCode VecPlaceArray(Vec,const PetscScalar[]); 393dfbe8321SBarry Smith EXTERN PetscErrorCode VecResetArray(Vec); 394dfbe8321SBarry Smith EXTERN PetscErrorCode VecReplaceArray(Vec,const PetscScalar[]); 39532dcc486SBarry Smith EXTERN PetscErrorCode VecGetArrays(const Vec[],PetscInt,PetscScalar**[]); 39632dcc486SBarry Smith EXTERN PetscErrorCode VecRestoreArrays(const Vec[],PetscInt,PetscScalar**[]); 39784cb2905SBarry Smith 398dfbe8321SBarry Smith EXTERN PetscErrorCode VecValid(Vec,PetscTruth*); 399dfbe8321SBarry Smith EXTERN PetscErrorCode VecView(Vec,PetscViewer); 400dfbe8321SBarry Smith EXTERN PetscErrorCode VecViewFromOptions(Vec, char *); 401dfbe8321SBarry Smith EXTERN PetscErrorCode VecEqual(Vec,Vec,PetscTruth*); 402dfbe8321SBarry Smith EXTERN PetscErrorCode VecLoad(PetscViewer,const VecType,Vec*); 403dfbe8321SBarry Smith EXTERN PetscErrorCode VecLoadIntoVector(PetscViewer,Vec); 4048ed539a5SBarry Smith 40532dcc486SBarry Smith EXTERN PetscErrorCode VecGetSize(Vec,PetscInt*); 40632dcc486SBarry Smith EXTERN PetscErrorCode VecGetLocalSize(Vec,PetscInt*); 40732dcc486SBarry Smith EXTERN PetscErrorCode VecGetOwnershipRange(Vec,PetscInt*,PetscInt*); 4088ed539a5SBarry Smith 409dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping); 41032dcc486SBarry Smith EXTERN PetscErrorCode VecSetValuesLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 411dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetLocalToGlobalMappingBlock(Vec,ISLocalToGlobalMapping); 41232dcc486SBarry Smith EXTERN PetscErrorCode VecSetValuesBlockedLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 41390f02eecSBarry Smith 414dfbe8321SBarry Smith EXTERN PetscErrorCode VecDotBegin(Vec,Vec,PetscScalar *); 415dfbe8321SBarry Smith EXTERN PetscErrorCode VecDotEnd(Vec,Vec,PetscScalar *); 416dfbe8321SBarry Smith EXTERN PetscErrorCode VecTDotBegin(Vec,Vec,PetscScalar *); 417dfbe8321SBarry Smith EXTERN PetscErrorCode VecTDotEnd(Vec,Vec,PetscScalar *); 418dfbe8321SBarry Smith EXTERN PetscErrorCode VecNormBegin(Vec,NormType,PetscReal *); 419dfbe8321SBarry Smith EXTERN PetscErrorCode VecNormEnd(Vec,NormType,PetscReal *); 420d3c178dbSBarry Smith 421fdbc4c26SBarry Smith typedef enum {VEC_IGNORE_OFF_PROC_ENTRIES,VEC_TREAT_OFF_PROC_ENTRIES} VecOption; 422dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetOption(Vec,VecOption); 42390f02eecSBarry Smith 424ebe3b25bSBarry Smith /* 425ebe3b25bSBarry Smith Expose VecGetArray()/VecRestoreArray() to users. Allows this to work without any function 426ebe3b25bSBarry Smith call overhead on any 'native' Vecs. 427ebe3b25bSBarry Smith */ 4283c94ec11SBarry Smith #include "vecimpl.h" 429ebe3b25bSBarry Smith 430dfbe8321SBarry Smith EXTERN PetscErrorCode VecContourScale(Vec,PetscReal,PetscReal); 431522c5e43SBarry Smith 43215091d37SBarry Smith /* 43315091d37SBarry Smith These numbers need to match the entries in 4343c94ec11SBarry Smith the function table in vecimpl.h 43515091d37SBarry Smith */ 436b1bcba4aSBarry Smith typedef enum { VECOP_VIEW = 32, 437b1bcba4aSBarry Smith VECOP_LOADINTOVECTOR = 38 43815091d37SBarry Smith } VecOperation; 439dfbe8321SBarry Smith EXTERN PetscErrorCode VecSetOperation(Vec,VecOperation,void(*)(void)); 440b19c1e4cSBarry Smith 441e182c471SBarry Smith /* 442e182c471SBarry Smith Routines for dealing with ghosted vectors: 443e182c471SBarry Smith vectors with ghost elements at the end of the array. 444e182c471SBarry Smith */ 44532dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhost(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 44632dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhostWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 44732dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhostBlock(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 44832dcc486SBarry Smith EXTERN PetscErrorCode VecCreateGhostBlockWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 449dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostGetLocalForm(Vec,Vec*); 450dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostRestoreLocalForm(Vec,Vec*); 451dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostUpdateBegin(Vec,InsertMode,ScatterMode); 452dfbe8321SBarry Smith EXTERN PetscErrorCode VecGhostUpdateEnd(Vec,InsertMode,ScatterMode); 453e182c471SBarry Smith 454dfbe8321SBarry Smith EXTERN PetscErrorCode VecConjugate(Vec); 45534233285SBarry Smith 456dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCreateToAll(Vec,VecScatter*,Vec*); 457dfbe8321SBarry Smith EXTERN PetscErrorCode VecScatterCreateToZero(Vec,VecScatter*,Vec*); 458bba1ac68SSatish Balay 459dfbe8321SBarry Smith EXTERN PetscErrorCode PetscViewerMathematicaGetVector(PetscViewer, Vec); 460dfbe8321SBarry Smith EXTERN PetscErrorCode PetscViewerMathematicaPutVector(PetscViewer, Vec); 4617dbadf16SMatthew Knepley 462d59c15a7SBarry Smith /*S 463d59c15a7SBarry Smith Vecs - Collection of vectors where the data for the vectors is stored in 464d59c15a7SBarry Smith one continquous memory 465d59c15a7SBarry Smith 466d59c15a7SBarry Smith Level: advanced 467d59c15a7SBarry Smith 468d59c15a7SBarry Smith Notes: 469d59c15a7SBarry Smith Temporary construct for handling multiply right hand side solves 470d59c15a7SBarry Smith 471d59c15a7SBarry Smith This is faked by storing a single vector that has enough array space for 472d59c15a7SBarry Smith n vectors 473d59c15a7SBarry Smith 474d59c15a7SBarry Smith Concepts: parallel decomposition 475d59c15a7SBarry Smith 476d59c15a7SBarry Smith S*/ 47732dcc486SBarry Smith struct _p_Vecs {PetscInt n; Vec v;}; 478d59c15a7SBarry Smith typedef struct _p_Vecs* Vecs; 479d59c15a7SBarry Smith #define VecsDestroy(x) (VecDestroy((x)->v) || PetscFree(x)) 480d59c15a7SBarry Smith #define VecsCreateSeq(comm,p,m,x) (PetscNew(struct _p_Vecs,x) || VecCreateSeq(comm,p*m,&(*(x))->v) || (-1 == ((*(x))->n = (m)))) 481d59c15a7SBarry Smith #define VecsCreateSeqWithArray(comm,p,m,a,x) (PetscNew(struct _p_Vecs,x) || VecCreateSeqWithArray(comm,p*m,a,&(*(x))->v) || (-1 == ((*(x))->n = (m)))) 482d59c15a7SBarry Smith #define VecsDuplicate(x,y) (PetscNew(struct _p_Vecs,y) || VecDuplicate(x->v,&(*(y))->v) || (-1 == ((*(y))->n = (x)->n))) 483e9fa29b7SSatish Balay 484e9fa29b7SSatish Balay 485e9fa29b7SSatish Balay PETSC_EXTERN_CXX_END 4862eac72dbSBarry Smith #endif 487