1d70abbfaSBarry Smith 2d70abbfaSBarry Smith #if !defined(__PETSCVIEWERHDF5_H) 3d70abbfaSBarry Smith #define __PETSCVIEWERHDF5_H 4d70abbfaSBarry Smith 5d70abbfaSBarry Smith #include <petscviewer.h> 6d70abbfaSBarry Smith 72c1a2d08SJed Brown #if defined(PETSC_HAVE_HDF5) 82c1a2d08SJed Brown 9d70abbfaSBarry Smith #include <hdf5.h> 10d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer,hid_t*); 11d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, hid_t *, hid_t *); 127adab82aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadSizes(PetscViewer, const char[], PetscInt *, PetscInt *); 13d70abbfaSBarry Smith 14d70abbfaSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 15d70abbfaSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 16d70abbfaSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 17d70abbfaSBarry Smith 18d70abbfaSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscHDF5IntCast(PetscInt a,hsize_t *b) 19d70abbfaSBarry Smith { 20d70abbfaSBarry Smith PetscFunctionBegin; 21d70abbfaSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && (PETSC_SIZEOF_SIZE_T == 4) 22d70abbfaSBarry Smith if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5"); 23d70abbfaSBarry Smith #endif 24d70abbfaSBarry Smith *b = (hsize_t)(a); 25d70abbfaSBarry Smith PetscFunctionReturn(0); 26d70abbfaSBarry Smith } 2736bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType,hid_t*); 2836bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t,PetscDataType*); 292c1a2d08SJed Brown 3070efba33SBarry Smith #define PetscStackCallHDF5(func,args) do { \ 31729ab6d9SBarry Smith herr_t _status; \ 32729ab6d9SBarry Smith PetscStackPush(#func);_status = func args;PetscStackPop; if (_status) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)_status); \ 33729ab6d9SBarry Smith } while (0) 34729ab6d9SBarry Smith 35729ab6d9SBarry Smith #define PetscStackCallHDF5Return(ret,func,args) do { \ 36729ab6d9SBarry Smith PetscStackPush(#func);ret = func args;PetscStackPop; if (ret < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)ret); \ 3770efba33SBarry Smith } while (0) 3870efba33SBarry Smith 392c1a2d08SJed Brown #endif /* defined(PETSC_HAVE_HDF5) */ 40d70abbfaSBarry Smith 41ecce1506SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObject(PetscViewer,PetscObject,PetscBool*); 42ad0c61feSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer,const char[],const char[],PetscDataType,void*); 4336bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*); 44e7bdbf8eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer, const char[], const char[], PetscBool *); 45*577e0e04SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadObjectAttribute(PetscViewer,PetscObject,const char[],PetscDataType,void*); 46*577e0e04SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteObjectAttribute(PetscViewer,PetscObject,const char[],PetscDataType,const void*); 47*577e0e04SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObjectAttribute(PetscViewer,PetscObject,const char[],PetscBool*); 48d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteSDS(PetscViewer,float *,int,int *,int); 49d70abbfaSBarry Smith 50d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm,const char[],PetscFileMode,PetscViewer*); 51d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer,const char *); 52d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer); 53d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer, const char **); 540a9f38efSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasGroup(PetscViewer,PetscBool*); 55d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer); 56d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer,PetscInt); 57d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer,PetscInt*); 58d70abbfaSBarry Smith 5982ea9b62SBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetBaseDimension2(PetscViewer,PetscBool); 6082ea9b62SBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetBaseDimension2(PetscViewer,PetscBool*); 6182ea9b62SBarry Smith 629a0502c6SHåkon Strandenes PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetSPOutput(PetscViewer,PetscBool); 639a0502c6SHåkon Strandenes PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetSPOutput(PetscViewer,PetscBool*); 649a0502c6SHåkon Strandenes 65058bd781SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetAIJNames(PetscViewer,const char[],const char[],const char[],const char[]); 66058bd781SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetAIJNames(PetscViewer,const char*[],const char*[],const char*[],const char*[]); 67d70abbfaSBarry Smith #endif 68