1d70abbfaSBarry Smith 2d70abbfaSBarry Smith #if !defined(__PETSCVIEWERHDF5_H) 3d70abbfaSBarry Smith #define __PETSCVIEWERHDF5_H 4d70abbfaSBarry Smith 5d70abbfaSBarry Smith #include <petscviewer.h> 6d70abbfaSBarry Smith 72c1a2d08SJed Brown #if defined(PETSC_HAVE_HDF5) 82c1a2d08SJed Brown 9d70abbfaSBarry Smith #include <hdf5.h> 10d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer,hid_t*); 11d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, hid_t *, hid_t *); 12d70abbfaSBarry Smith 13d70abbfaSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 14*84ccb19eSJed Brown #define PETSC_HDF5_INT_MAX (~(hsize_t)0) 15d70abbfaSBarry Smith 16d70abbfaSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscHDF5IntCast(PetscInt a,hsize_t *b) 17d70abbfaSBarry Smith { 18d70abbfaSBarry Smith PetscFunctionBegin; 19*84ccb19eSJed Brown if (a < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Cannot convert negative size"); 20*84ccb19eSJed Brown #if defined(PETSC_USE_64BIT_INDICES) && (H5_SIZEOF_HSIZE_T == 4) 21*84ccb19eSJed Brown if (a > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5"); 22d70abbfaSBarry Smith #endif 23d70abbfaSBarry Smith *b = (hsize_t)(a); 24d70abbfaSBarry Smith PetscFunctionReturn(0); 25d70abbfaSBarry Smith } 2636bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType,hid_t*); 2736bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t,PetscDataType*); 282c1a2d08SJed Brown 2970efba33SBarry Smith #define PetscStackCallHDF5(func,args) do { \ 30729ab6d9SBarry Smith herr_t _status; \ 31729ab6d9SBarry Smith PetscStackPush(#func);_status = func args;PetscStackPop; if (_status) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)_status); \ 32729ab6d9SBarry Smith } while (0) 33729ab6d9SBarry Smith 34729ab6d9SBarry Smith #define PetscStackCallHDF5Return(ret,func,args) do { \ 35729ab6d9SBarry Smith PetscStackPush(#func);ret = func args;PetscStackPop; if (ret < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)ret); \ 3670efba33SBarry Smith } while (0) 3770efba33SBarry Smith 382c1a2d08SJed Brown #endif /* defined(PETSC_HAVE_HDF5) */ 39d70abbfaSBarry Smith 40ecce1506SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObject(PetscViewer,PetscObject,PetscBool*); 41ad0c61feSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer,const char[],const char[],PetscDataType,void*); 4236bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*); 43e7bdbf8eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer, const char[], const char[], PetscBool *); 44577e0e04SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadObjectAttribute(PetscViewer,PetscObject,const char[],PetscDataType,void*); 45577e0e04SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteObjectAttribute(PetscViewer,PetscObject,const char[],PetscDataType,const void*); 46577e0e04SVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasObjectAttribute(PetscViewer,PetscObject,const char[],PetscBool*); 47d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteSDS(PetscViewer,float *,int,int *,int); 48d70abbfaSBarry Smith 49d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm,const char[],PetscFileMode,PetscViewer*); 50d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer,const char *); 51d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer); 52d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer, const char **); 530a9f38efSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasGroup(PetscViewer,PetscBool*); 54d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer); 55d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer,PetscInt); 56d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer,PetscInt*); 57d70abbfaSBarry Smith 5882ea9b62SBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetBaseDimension2(PetscViewer,PetscBool); 5982ea9b62SBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetBaseDimension2(PetscViewer,PetscBool*); 6082ea9b62SBarry Smith 619a0502c6SHåkon Strandenes PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetSPOutput(PetscViewer,PetscBool); 629a0502c6SHåkon Strandenes PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetSPOutput(PetscViewer,PetscBool*); 63d70abbfaSBarry Smith #endif 64