1d70abbfaSBarry Smith 2d70abbfaSBarry Smith #if !defined(__PETSCVIEWERHDF5_H) 3d70abbfaSBarry Smith #define __PETSCVIEWERHDF5_H 4d70abbfaSBarry Smith 5d70abbfaSBarry Smith #include <petscviewer.h> 6d70abbfaSBarry Smith 72c1a2d08SJed Brown #if defined(PETSC_HAVE_HDF5) 82c1a2d08SJed Brown 9d70abbfaSBarry Smith #include <hdf5.h> 10d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer,hid_t*); 11d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, hid_t *, hid_t *); 127adab82aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadSizes(PetscViewer, const char[], PetscInt *, PetscInt *); 13d70abbfaSBarry Smith 14d70abbfaSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 15d70abbfaSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 16d70abbfaSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 17d70abbfaSBarry Smith 18d70abbfaSBarry Smith #undef __FUNCT__ 19d70abbfaSBarry Smith #define __FUNCT__ "PetscHDF5IntCast" 20d70abbfaSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscHDF5IntCast(PetscInt a,hsize_t *b) 21d70abbfaSBarry Smith { 22d70abbfaSBarry Smith PetscFunctionBegin; 23d70abbfaSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && (PETSC_SIZEOF_SIZE_T == 4) 24d70abbfaSBarry Smith if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5"); 25d70abbfaSBarry Smith #endif 26d70abbfaSBarry Smith *b = (hsize_t)(a); 27d70abbfaSBarry Smith PetscFunctionReturn(0); 28d70abbfaSBarry Smith } 2936bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType,hid_t*); 3036bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t,PetscDataType*); 312c1a2d08SJed Brown 3270efba33SBarry Smith #define PetscStackCallHDF5(func,args) do { \ 33729ab6d9SBarry Smith herr_t _status; \ 34729ab6d9SBarry Smith PetscStackPush(#func);_status = func args;PetscStackPop; if (_status) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)_status); \ 35729ab6d9SBarry Smith } while (0) 36729ab6d9SBarry Smith 37729ab6d9SBarry Smith #define PetscStackCallHDF5Return(ret,func,args) do { \ 38729ab6d9SBarry Smith PetscStackPush(#func);ret = func args;PetscStackPop; if (ret < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)ret); \ 3970efba33SBarry Smith } while (0) 4070efba33SBarry Smith 412c1a2d08SJed Brown #endif /* defined(PETSC_HAVE_HDF5) */ 42d70abbfaSBarry Smith 43ad0c61feSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer,const char[],const char[],PetscDataType,void*); 4436bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*); 45e7bdbf8eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer, const char[], const char[], PetscBool *); 46d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteSDS(PetscViewer,float *,int,int *,int); 47d70abbfaSBarry Smith 48d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm,const char[],PetscFileMode,PetscViewer*); 49d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer,const char *); 50d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer); 51d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer, const char **); 52d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer); 53d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer,PetscInt); 54d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer,PetscInt*); 55d70abbfaSBarry Smith 5682ea9b62SBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetBaseDimension2(PetscViewer,PetscBool); 5782ea9b62SBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetBaseDimension2(PetscViewer,PetscBool*); 5882ea9b62SBarry Smith 59*9a0502c6SHåkon Strandenes PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetSPOutput(PetscViewer,PetscBool); 60*9a0502c6SHåkon Strandenes PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetSPOutput(PetscViewer,PetscBool*); 61*9a0502c6SHåkon Strandenes 62e1e7ae07SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 63e1e7ae07SJed Brown #undef __FUNCT__ 64e1e7ae07SJed Brown #define __FUNCT__ "User provided function" 65e1e7ae07SJed Brown 66d70abbfaSBarry Smith #endif 67