1d70abbfaSBarry Smith 2d70abbfaSBarry Smith #if !defined(__PETSCVIEWERHDF5_H) 3d70abbfaSBarry Smith #define __PETSCVIEWERHDF5_H 4d70abbfaSBarry Smith 5d70abbfaSBarry Smith #include <petscviewer.h> 6d70abbfaSBarry Smith 72c1a2d08SJed Brown #if defined(PETSC_HAVE_HDF5) 82c1a2d08SJed Brown 9d70abbfaSBarry Smith #include <hdf5.h> 10d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer,hid_t*); 11d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, hid_t *, hid_t *); 12d70abbfaSBarry Smith 13d70abbfaSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 14d70abbfaSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 15d70abbfaSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 16d70abbfaSBarry Smith 17d70abbfaSBarry Smith #undef __FUNCT__ 18d70abbfaSBarry Smith #define __FUNCT__ "PetscHDF5IntCast" 19d70abbfaSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscHDF5IntCast(PetscInt a,hsize_t *b) 20d70abbfaSBarry Smith { 21d70abbfaSBarry Smith PetscFunctionBegin; 22d70abbfaSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && (PETSC_SIZEOF_SIZE_T == 4) 23d70abbfaSBarry Smith if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5"); 24d70abbfaSBarry Smith #endif 25d70abbfaSBarry Smith *b = (hsize_t)(a); 26d70abbfaSBarry Smith PetscFunctionReturn(0); 27d70abbfaSBarry Smith } 2836bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType,hid_t*); 2936bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t,PetscDataType*); 302c1a2d08SJed Brown 312c1a2d08SJed Brown #endif /* defined(PETSC_HAVE_HDF5) */ 32d70abbfaSBarry Smith 33ad0c61feSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer,const char[],const char[],PetscDataType,void*); 3436bce6e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*); 35*e7bdbf8eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer, const char[], const char[], PetscBool *); 36d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteSDS(PetscViewer,float *,int,int *,int); 37d70abbfaSBarry Smith 38d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm,const char[],PetscFileMode,PetscViewer*); 39d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer,const char *); 40d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer); 41d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer, const char **); 42d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer); 43d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer,PetscInt); 44d70abbfaSBarry Smith PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer,PetscInt*); 45d70abbfaSBarry Smith 46e1e7ae07SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 47e1e7ae07SJed Brown #undef __FUNCT__ 48e1e7ae07SJed Brown #define __FUNCT__ "User provided function" 49e1e7ae07SJed Brown 50d70abbfaSBarry Smith #endif 51