1# 2# See https://petsc.org/release/install/ for instructions on installing PETSc 3# 4# This is the top level makefile for compiling PETSc. 5# * make help - useful messages on functionality 6# * make all - compile the PETSc libraries and utilities 7# * make check - runs a quick test that the libraries are built correctly and PETSc applications can run 8# 9# * make install - for use with ./configure is run with the --prefix=directory option 10# * make test - runs a comprehensive test suite (requires gnumake) 11# * make docs - build the entire PETSc website of documentation (locally) 12# * a variety of rules that print library properties useful for building applications (use make help) 13# * a variety of rules for PETSc developers 14# 15# gmakefile - manages the compiling PETSc in parallel 16# gmakefile.test - manages running the comprehensive test suite 17# 18# This makefile does not require GNUmake 19ALL: all 20DIRS = src include interfaces share/petsc/matlab 21 22# next line defines PETSC_DIR and PETSC_ARCH if they are not set 23include ././${PETSC_ARCH}/lib/petsc/conf/petscvariables 24include ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscrules 25include ${PETSC_DIR}/lib/petsc/conf/variables 26include ${PETSC_DIR}/lib/petsc/conf/rules.doc 27 28# This makefile contains a lot of PHONY targets with improperly specified prerequisites 29# where correct execution instead depends on the targets being processed in the correct 30# order. 31.NOTPARALLEL: 32 33OMAKE_SELF = $(OMAKE) -f makefile 34OMAKE_SELF_PRINTDIR = $(OMAKE_PRINTDIR) -f makefile 35 36#********* Rules for make all ********************************************************************************************************************************** 37 38all: 39 +@${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} chk_upgrade | tee ${PETSC_ARCH}/lib/petsc/conf/make.log 40 @ln -sf ${PETSC_ARCH}/lib/petsc/conf/make.log make.log 41 +@(${OMAKE_SELF_PRINTDIR} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} all-local; echo "$$?" > ${PETSC_ARCH}/lib/petsc/conf/error.log) 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log 42 +@if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then \ 43 grep -E '(out of memory allocating.*after a total of|gfortran: fatal error: Killed signal terminated program f951|f95: fatal error: Killed signal terminated program f951)' ${PETSC_ARCH}/lib/petsc/conf/make.log | tee ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log > /dev/null; \ 44 if test -s ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log; then \ 45 printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 46 echo " Error during compile, you need to increase the memory allocated to the VM and rerun " 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 47 printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\ 48 else \ 49 printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 50 echo " Error during compile, check ${PETSC_ARCH}/lib/petsc/conf/make.log" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 51 echo " Send it and ${PETSC_ARCH}/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\ 52 printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\ 53 fi \ 54 else \ 55 ${OMAKE_SELF} print_mesg_after_build PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log ;\ 56 fi #solaris make likes to print the whole command that gave error. So split this up into the smallest chunk below 57 @echo "Finishing make run at `date +'%a, %d %b %Y %H:%M:%S %z'`" >> ${PETSC_ARCH}/lib/petsc/conf/make.log 58 @if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then exit 1; fi 59 60all-local: info libs matlabbin petsc4py-build libmesh-build mfem-build slepc-build hpddm-build amrex-build bamg-build 61 62${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files: 63 @touch -t 197102020000 ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files 64 65${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles: 66 @${MKDIR} -p ${PETSC_DIR}/${PETSC_ARCH}/tests && touch -t 197102020000 ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 67 68libs: ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 69 +@r=`echo "${MAKEFLAGS}" | grep ' -j'`; \ 70 if [ "$$?" = 0 ]; then make_j=""; else make_j="-j${MAKE_NP}"; fi; \ 71 r=`echo "${MAKEFLAGS}" | grep ' -l'`; \ 72 if [ "$$?" = 0 ]; then make_l=""; else make_l="-l${MAKE_LOAD}"; fi; \ 73 cmd="${OMAKE_PRINTDIR} -f gmakefile $${make_j} $${make_l} ${MAKE_PAR_OUT_FLG} V=${V} libs"; \ 74 cd ${PETSC_DIR} && echo $${cmd} && exec $${cmd} 75 76chk_upgrade: 77 -@PETSC_DIR=${PETSC_DIR} ${PYTHON} ${PETSC_DIR}/lib/petsc/bin/petscnagupgrade.py 78 79matlabbin: 80 -@if [ "${MATLAB_MEX}" != "" -a "${MATLAB_SOCKET}" != "" -a "${PETSC_SCALAR}" = "real" -a "${PETSC_PRECISION}" = "double" ]; then \ 81 echo "BEGINNING TO COMPILE MATLAB INTERFACE"; \ 82 if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc; fi; \ 83 if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab; fi; \ 84 cd src/sys/classes/viewer/impls/socket/mex-scripts && ${OMAKE_SELF} mex-scripts PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR}; \ 85 echo "========================================="; \ 86 fi 87 88allfortranstubs: 89 -@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir 90 @${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py ${BFORT} ${VERBOSE} 91 -@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py -merge ${VERBOSE} 92 -@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir 93 94deleteshared: 95 @for LIBNAME in ${SHLIBS}; \ 96 do \ 97 if [ -d ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM ]; then \ 98 echo ${RM} -rf ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM; \ 99 ${RM} -rf ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM; \ 100 fi; \ 101 echo ${RM} ${INSTALL_LIB_DIR}/$${LIBNAME}.${SL_LINKER_SUFFIX}; \ 102 ${RM} ${INSTALL_LIB_DIR}/$${LIBNAME}.${SL_LINKER_SUFFIX}; \ 103 done 104 @if [ -f ${INSTALL_LIB_DIR}/so_locations ]; then \ 105 echo ${RM} ${INSTALL_LIB_DIR}/so_locations; \ 106 ${RM} ${INSTALL_LIB_DIR}/so_locations; \ 107 fi 108 109deletefortranstubs: 110 -@find . -type d -name ftn-auto | xargs rm -rf 111 112reconfigure: allclean 113 @unset MAKEFLAGS && ${PYTHON} ${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py 114 115chkopts: 116 -@echo "Warning: chkopts target is deprecated and can be removed from user makefiles" 117 118gnumake: 119 +@echo "make gnumake is deprecated, use make libs" 120 +@make libs 121 122# ******** Rules for make check **************************************************************************************************************************** 123 124RUN_TEST = ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff 125 126check_install: check 127check: 128 -@echo "Running check examples to verify correct installation" 129 -@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}" 130 @if [ "${PETSC_WITH_BATCH}" != "" ]; then \ 131 echo "Running with batch filesystem, cannot run make check"; \ 132 elif [ "${MPIEXEC}" = "/bin/false" ]; then \ 133 echo "*mpiexec not found*. cannot run make check"; \ 134 else \ 135 ${RM} -f check_error;\ 136 ${RUN_TEST} PETSC_OPTIONS="${PETSC_OPTIONS} ${PETSC_TEST_OPTIONS}" PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" check_build 2>&1 | tee ./${PETSC_ARCH}/lib/petsc/conf/check.log; \ 137 if [ -f check_error ]; then \ 138 echo "Error while running make check"; \ 139 ${RM} -f check_error;\ 140 exit 1; \ 141 fi; \ 142 ${RM} -f check_error;\ 143 fi; 144 145check_build: 146 +@cd src/snes/tutorials >/dev/null; ${RUN_TEST} clean-legacy 147 +@cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19 148 +@if [ ! "${MPI_IS_MPIUNI}" ]; then cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19_mpi; fi 149 +@if [ "${HYPRE_LIB}" != "" ] && [ "${PETSC_SCALAR}" = "real" ]; then \ 150 if [ "${CUDA_LIB}" != "" ]; then HYPRE_TEST=runex19_hypre_cuda; \ 151 elif [ "${HIP_LIB}" != "" ]; then HYPRE_TEST=runex19_hypre_hip; \ 152 else HYPRE_TEST=runex19_hypre; fi; \ 153 cd src/snes/tutorials >/dev/null; ${RUN_TEST} $${HYPRE_TEST}; \ 154 fi; 155 +@if [ "${CUDA_LIB}" != "" ]; then \ 156 cd src/snes/tutorials >/dev/null; ${RUN_TEST} runex19_cuda; \ 157 fi; 158 +@if [ "${MPI_IS_MPIUNI}" = "" ]; then \ 159 cd src/snes/tutorials >/dev/null; \ 160 if [ "${KOKKOS_KERNELS_LIB}" != "" ] && [ "${PETSC_SCALAR}" = "real" ] && [ "${PETSC_PRECISION}" = "double" ]; then \ 161 ${RUN_TEST} runex3k_kokkos; \ 162 fi;\ 163 if [ "${MUMPS_LIB}" != "" ]; then \ 164 ${RUN_TEST} runex19_fieldsplit_mumps; \ 165 fi;\ 166 if [ "${SUITESPARSE_LIB}" != "" ]; then \ 167 ${RUN_TEST} runex19_suitesparse; \ 168 fi;\ 169 if [ "${SUPERLU_DIST_LIB}" != "" ]; then \ 170 ${RUN_TEST} runex19_superlu_dist; \ 171 fi;\ 172 if ( [ "${ML_LIB}" != "" ] || [ "${TRILINOS_LIB}" != "" ] ); then \ 173 ${RUN_TEST} runex19_ml; \ 174 fi; \ 175 ${RUN_TEST} clean-legacy; \ 176 cd - > /dev/null; \ 177 if ( [ "${AMREX_LIB}" != "" ] && [ "${CUDA_LIB}" = "" ] ); then \ 178 echo "Running amrex test example to verify correct installation";\ 179 echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}";\ 180 cd src/ksp/ksp/tutorials/amrex >/dev/null;\ 181 ${RUN_TEST} clean-legacy; \ 182 ${RUN_TEST} testamrex; \ 183 ${RUN_TEST} clean-legacy; \ 184 cd - > /dev/null; \ 185 fi;\ 186 fi; 187 +@if [ "${HDF5_LIB}" != "" ]; then \ 188 cd src/vec/vec/tests >/dev/null;\ 189 ${RUN_TEST} clean-legacy; \ 190 ${RUN_TEST} runex47; \ 191 ${RUN_TEST} clean-legacy; \ 192 fi; 193 +@if [ "${MPI4PY}" = "yes" ]; then \ 194 cd src/sys/tests >/dev/null; \ 195 ${RUN_TEST} clean-legacy; \ 196 ${RUN_TEST} testex55; \ 197 ${RUN_TEST} clean-legacy; \ 198 fi; 199 +@if [ "${PETSC4PY}" = "yes" ]; then \ 200 cd src/ksp/ksp/tutorials >/dev/null; \ 201 ${RUN_TEST} clean-legacy; \ 202 ${RUN_TEST} testex100; \ 203 ${RUN_TEST} clean-legacy; \ 204 fi; 205 +@grep -E "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \ 206 if test -s .ftn.log; then \ 207 cd src/snes/tutorials >/dev/null; \ 208 ${RUN_TEST} clean-legacy; \ 209 ${RUN_TEST} testex5f; \ 210 ${RUN_TEST} clean-legacy; \ 211 fi; ${RM} .ftn.log; 212 +@grep -E "^#define PETSC_HAVE_MATLAB 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \ 213 if test -s .ftn.log; then \ 214 cd src/vec/vec/tutorials >/dev/null; \ 215 ${RUN_TEST} clean-legacy; \ 216 ${RUN_TEST} testex31; \ 217 ${RUN_TEST} clean-legacy; \ 218 fi; ${RM} .ftn.log; 219 -@echo "Completed test examples" 220 221# ********* Rules for make install ******************************************************************************************************************* 222 223install: 224 @${PYTHON} ./config/install.py -destDir=${DESTDIR} 225 +${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=$@ install-builtafterpetsc 226 227# A smaller install with fewer extras 228install-lib: 229 @${PYTHON} ./config/install.py -destDir=${DESTDIR} -no-examples 230 +${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=$@ install-builtafterpetsc 231 232install-builtafterpetsc: 233 +${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=${PETSC_INSTALL} petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install 234 235# Creates ${HOME}/petsc.tar.gz [and petsc-with-docs.tar.gz] 236dist: 237 ${PETSC_DIR}/lib/petsc/bin/maint/builddist ${PETSC_DIR} main 238 239# ******** Rules for running the full test suite ******************************************************************************************************** 240 241TESTMODE = testexamples 242ALLTESTS_CHECK_FAILURES = no 243ALLTESTS_MAKEFILE = ${PETSC_DIR}/gmakefile.test 244VALGRIND=0 245alltests: chk_in_petscdir ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 246 -@${RM} -rf ${PETSC_ARCH}/lib/petsc/conf/alltests.log alltests.log 247 +@if [ -f ${PETSC_DIR}/share/petsc/examples/gmakefile.test ] ; then \ 248 ALLTESTS_MAKEFILE=${PETSC_DIR}/share/petsc/examples/gmakefile.test ; \ 249 ALLTESTSLOG=alltests.log ;\ 250 else \ 251 ALLTESTS_MAKEFILE=${PETSC_DIR}/gmakefile.test; \ 252 ALLTESTSLOG=${PETSC_ARCH}/lib/petsc/conf/alltests.log ;\ 253 ln -s $${ALLTESTSLOG} alltests.log ;\ 254 fi; \ 255 ${OMAKE} allgtest ALLTESTS_MAKEFILE=$${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} MPIEXEC="${MPIEXEC}" DATAFILESPATH=${DATAFILESPATH} VALGRIND=${VALGRIND} 2>&1 | tee $${ALLTESTSLOG};\ 256 if [ x${ALLTESTS_CHECK_FAILURES} = xyes -a ${PETSC_PRECISION} != single ]; then \ 257 cat $${ALLTESTSLOG} | grep -E '(^not ok|not remade because of errors|^# No tests run)' | wc -l | grep '^[ ]*0$$' > /dev/null; \ 258 fi; 259 260allgtests-tap: allgtest-tap 261 +@${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} check-test-errors 262 263allgtest-tap: ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 264 +@MAKEFLAGS="-j$(MAKE_TEST_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)" ${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test OUTPUT=1 265 266allgtest: ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 267 +@MAKEFLAGS="-j$(MAKE_TEST_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)" ${OMAKE} -k -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test V=0 2>&1 | grep -E -v '^(ok [^#]*(# SKIP|# TODO|$$)|[A-Za-z][A-Za-z0-9_]*\.(c|F|cxx|F90).$$)' 268 269test: 270 +${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test 271cleantest: 272 +${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} cleantest 273 274#********* Rules for cleaning *************************************************************************************************************************** 275 276deletelibs: 277 -${RM} -rf ${PETSC_LIB_DIR}/libpetsc*.* 278deletemods: 279 -${RM} -f ${PETSC_DIR}/${PETSC_ARCH}/include/petsc*.mod 280 281allclean: 282 -@${OMAKE} -f gmakefile clean 283 284clean:: allclean 285 286distclean: 287 @if [ -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ]; then \ 288 echo "*** Preserving ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py in ${PETSC_DIR} ***"; \ 289 mv -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ${PETSC_DIR}/; fi 290 @echo "*** Deleting all build files in ${PETSC_DIR}/${PETSC_ARCH} ***" 291 -${RM} -rf ${PETSC_DIR}/${PETSC_ARCH}/ 292 293#********* Rules for printing library properties useful for building applications *********************************************************** 294 295getmpilinklibs: 296 -@echo ${MPI_LIB} 297 298getmpiincludedirs: 299 -@echo ${MPI_INCLUDE} 300 301getmpiexec: 302 -@echo ${MPIEXEC} 303 304getccompiler: 305 -@echo ${CC} 306 307getfortrancompiler: 308 -@echo ${FC} 309 310getcxxcompiler: 311 -@echo ${CXX} 312 313getlinklibs: 314 -@echo ${C_SH_LIB_PATH} ${PETSC_TS_LIB} 315 316getincludedirs: 317 -@echo ${PETSC_CC_INCLUDES} 318 319getcflags: 320 -@echo ${CC_FLAGS} 321 322getcxxflags: 323 -@echo ${CXX_FLAGS} 324 325getfortranflags: 326 -@echo ${FC_FLAGS} 327 328getblaslapacklibs: 329 -@echo ${BLASLAPACK_LIB} 330 331getautoconfargs: 332 -@echo CC='"${CC}"' CXX='"${CXX}"' FC='"${FC}"' CFLAGS='"${CC_FLAGS}"' CXXFLAGS='"${CXX_FLAGS}"' FCFLAGS='"${FC_FLAGS}"' LIBS='"${C_SH_LIB_PATH} ${PETSC_TS_LIB}"' 333 334info: 335 -@echo "==========================================" 336 -@echo " " 337 -@echo "See documentation/faq.html and documentation/bugreporting.html" 338 -@echo "for help with installation problems. Please send EVERYTHING" 339 -@echo "printed out below when reporting problems. Please check the" 340 -@echo "mailing list archives and consider subscribing." 341 -@echo " " 342 -@echo " https://petsc.org/release/community/mailing/" 343 -@echo " " 344 -@echo "==========================================" 345 -@echo Starting make run on `hostname` at `date +'%a, %d %b %Y %H:%M:%S %z'` 346 -@echo Machine characteristics: `uname -a` 347 -@echo "-----------------------------------------" 348 -@echo "Using PETSc directory: ${PETSC_DIR}" 349 -@echo "Using PETSc arch: ${PETSC_ARCH}" 350 -@echo "-----------------------------------------" 351 -@grep "define PETSC_VERSION" ${PETSC_DIR}/include/petscversion.h | ${SED} "s/........//" | head -n 7 352 -@echo "-----------------------------------------" 353 -@echo "Using configure Options: ${CONFIGURE_OPTIONS}" 354 -@echo "Using configuration flags:" 355 -@grep "\#define " ${PETSCCONF_H} | tail -n +2 356 -@echo "-----------------------------------------" 357 -@echo "Using C compile: ${PETSC_CCOMPILE_SINGLE}" 358 -@if [ "${MPICC_SHOW}" != "" ]; then \ 359 printf "mpicc -show: %b\n" "${MPICC_SHOW}";\ 360 fi; \ 361 printf "C compiler version: %b\n" "${C_VERSION}"; \ 362 if [ "${CXX}" != "" ]; then \ 363 echo "Using C++ compile: ${PETSC_CXXCOMPILE_SINGLE}";\ 364 if [ "${MPICXX_SHOW}" != "" ]; then \ 365 printf "mpicxx -show: %b\n" "${MPICXX_SHOW}"; \ 366 fi;\ 367 printf "C++ compiler version: %b\n" "${Cxx_VERSION}"; \ 368 fi 369 -@if [ "${FC}" != "" ]; then \ 370 echo "Using Fortran compile: ${PETSC_FCOMPILE_SINGLE}";\ 371 if [ "${MPIFC_SHOW}" != "" ]; then \ 372 printf "mpif90 -show: %b\n" "${MPIFC_SHOW}"; \ 373 fi; \ 374 printf "Fortran compiler version: %b\n" "${FC_VERSION}"; \ 375 fi 376 -@if [ "${CUDAC}" != "" ]; then \ 377 echo "Using CUDA compile: ${PETSC_CUCOMPILE_SINGLE}";\ 378 fi 379 -@if [ "${CLANGUAGE}" = "CXX" ]; then \ 380 echo "Using C++ compiler to compile PETSc";\ 381 fi 382 -@echo "-----------------------------------------" 383 -@echo "Using C/C++ linker: ${PCC_LINKER}" 384 -@echo "Using C/C++ flags: ${PCC_LINKER_FLAGS}" 385 -@if [ "${FC}" != "" ]; then \ 386 echo "Using Fortran linker: ${FC_LINKER}";\ 387 echo "Using Fortran flags: ${FC_LINKER_FLAGS}";\ 388 fi 389 -@echo "-----------------------------------------" 390 -@echo "Using system modules: ${LOADEDMODULES}" 391 -@if [ "${MPI_IS_MPIUNI}" = "1" ]; then \ 392 echo Using mpi.h: mpiuni; \ 393 else \ 394 TESTDIR=`mktemp -q -d -t petscmpi-XXXXXXXX` && \ 395 echo '#include <mpi.h>' > $${TESTDIR}/mpitest.c && \ 396 BUF=`${CPP} ${PETSC_CPPFLAGS} ${PETSC_CC_INCLUDES} $${TESTDIR}/mpitest.c |grep 'mpi\.h' | ( head -1 ; cat > /dev/null )` && \ 397 echo Using mpi.h: $${BUF}; ${RM} -rf $${TESTDIR}; \ 398 fi 399 -@echo "-----------------------------------------" 400 -@echo "Using libraries: ${PETSC_LIB}" 401 -@echo "------------------------------------------" 402 -@echo "Using mpiexec: ${MPIEXEC}" 403 -@echo "------------------------------------------" 404 -@echo "Using MAKE: ${MAKE}" 405 -@echo "Default MAKEFLAGS: MAKE_NP:${MAKE_NP} MAKE_LOAD:${MAKE_LOAD} MAKEFLAGS:${MAKEFLAGS}" 406 -@echo "==========================================" 407 408 409check_usermakefile: 410 -@echo "Testing compile with user makefile" 411 -@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}" 412 @cd src/snes/tutorials; ${RUN_TEST} clean-legacy 413 @cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex19 414 @grep -E "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \ 415 if test -s .ftn.log; then \ 416 cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex5f; \ 417 fi; ${RM} .ftn.log; 418 @cd src/snes/tutorials; ${RUN_TEST} clean-legacy 419 -@echo "Completed compile with user makefile" 420 421#********* Rules for running clangformat ************************************************************************************************************ 422 423checkgitclean: 424 @if ! git diff --quiet; then \ 425 echo "The repository has uncommitted files, cannot run checkclangformat" ;\ 426 git status -s --untracked-files=no ;\ 427 false;\ 428 fi; 429 430checkclangformatversion: 431 @version=`clang-format --version | cut -d" " -f3 | cut -d"." -f 1` ;\ 432 if [ "$$version" == "version" ]; then version=`clang-format --version | cut -d" " -f4 | cut -d"." -f 1`; fi;\ 433 if [ $$version != 16 ]; then echo "Require clang-format version 16! Currently used clang-format version is $$version" ;false ; fi 434 435# Check that all the source code in the repository satisfies the .clang_format 436checkclangformat: checkclangformatversion checkgitclean clangformat 437 @if ! git diff --quiet; then \ 438 printf "The current commit has source code formatting problems\n" ;\ 439 if [ -z "${CI_PIPELINE_ID}" ]; then \ 440 printf "Please run 'git diff' to check\n"; \ 441 git diff --stat; \ 442 else \ 443 git diff --patch-with-stat > ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch; \ 444 git diff --patch-with-stat --color=always | head -1000; \ 445 if [ `wc -l < ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch` -gt 1000 ]; then \ 446 printf "The diff has been trimmed, check ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch (in CI artifacts) for all changes\n"; \ 447 fi;\ 448 fi;\ 449 false;\ 450 fi; 451 452# Compare ABI/API of two versions of PETSc library with the old one defined by PETSC_{DIR,ARCH}_ABI_OLD 453abitest: 454 @if [ "${PETSC_DIR_ABI_OLD}" = "" ] || [ "${PETSC_ARCH_ABI_OLD}" = "" ]; \ 455 then printf "You must set environment variables PETSC_DIR_ABI_OLD and PETSC_ARCH_ABI_OLD to run abitest\n"; \ 456 exit 1; \ 457 fi; 458 -@echo "Comparing ABI/API of the following two PETSc versions (you must have already configured and built them using GCC and with -g):" 459 -@echo "=========================================================================================" 460 -@echo " Old: PETSC_DIR_ABI_OLD = ${PETSC_DIR_ABI_OLD}" 461 -@echo " PETSC_ARCH_ABI_OLD = ${PETSC_ARCH_ABI_OLD}" 462 -@pushd ${PETSC_DIR_ABI_OLD} >> /dev/null ; echo " Branch = "`git rev-parse --abbrev-ref HEAD` 463 -@echo " New: PETSC_DIR = ${PETSC_DIR}" 464 -@echo " PETSC_ARCH = ${PETSC_ARCH}" 465 -@echo " Branch = "`git rev-parse --abbrev-ref HEAD` 466 -@echo "=========================================================================================" 467 -@$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/abicheck.py -old_dir ${PETSC_DIR_ABI_OLD} -old_arch ${PETSC_ARCH_ABI_OLD} -new_dir ${PETSC_DIR} -new_arch ${PETSC_ARCH} -report_format html 468 469# Compare ABI/API of current PETSC_ARCH/PETSC_DIR with a previous branch 470abitestcomplete: 471 -@if [[ -f "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log" ]]; then \ 472 OPTIONS=`grep -h -m 1 "Configure Options: " ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log | sed "s!Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions!!g"` ;\ 473echo $${OPTIONS} ;\ 474 fi ; \ 475 if [[ "${PETSC_DIR_ABI_OLD}" != "" ]]; then \ 476 PETSC_DIR_OLD=${PETSC_DIR_ABI_OLD}; \ 477 else \ 478 PETSC_DIR_OLD=${PETSC_DIR}/../petsc-abi; \ 479 fi ; \ 480 echo "=================================================================================================" ;\ 481 echo "Doing ABI/API comparison between" ${branch} " and " `git rev-parse --abbrev-ref HEAD` "using " $${OPTIONS} ;\ 482 echo "=================================================================================================" ;\ 483 if [[ ! -d $${PETSC_DIR_OLD} ]]; then \ 484 git clone ${PETSC_DIR} $${PETSC_DIR_OLD} ; \ 485 else \ 486 cd $${PETSC_DIR_OLD} ; \ 487 git pull ; \ 488 fi ; \ 489 cd $${PETSC_DIR_OLD} ; \ 490 git checkout ${branch} ; \ 491 PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` ./configure $${OPTIONS} ; \ 492 PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` make all test ; \ 493 cd ${PETSC_DIR} ; \ 494 ./configure $${OPTIONS}; \ 495 make all test ; \ 496 PETSC_DIR_ABI_OLD=$${PETSC_DIR_OLD} PETSC_ARCH_ABI_OLD=arch-branch-`git rev-parse ${branch}` make abitest 497 498# ******** Rules for running Streams benchmark **************************************************************************************************** 499 500mpistreams: 501 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistreams 502 503mpistream: 504 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistream 505 506openmpstreams: 507 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstreams 508 509openmpstream: 510 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstream 511 512stream: mpistream 513 514streams: mpistreams 515 516# ******** Rules for generating tag files for Emacs/VIM ******************************************************************************************* 517 518alletags: 519 -@${PYTHON} lib/petsc/bin/maint/generateetags.py 520 -@find config -type f -name "*.py" |grep -v SCCS | xargs etags -o TAGS_PYTHON 521 522# obtain gtags from https://www.gnu.org/software/global/ 523allgtags: 524 -@find ${PETSC_DIR}/include ${PETSC_DIR}/src -regex '\(.*makefile\|.*\.\(cc\|hh\|cpp\|cxx\|C\|hpp\|c\|h\|cu\|m\)$$\)' | grep -v ftn-auto | gtags -f - 525 526# ********* Rules for building "classic" documentation; uses rules also in lib/petsc/conf/rules.doc ************************************************** 527 528docs: 529 cd doc; ${OMAKE_SELF} sphinxhtml 530 531chk_in_petscdir: 532 @if [ ! -f include/petscversion.h ]; then \ 533 printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR **********************************************\n" ; \ 534 echo " This target should be invoked in top level PETSc source dir!"; \ 535 printf "****************************************************************************"${PETSC_TEXT_NORMAL}"\n" ; false; fi 536 537chk_loc: 538 @if [ ${LOC}foo = foo ] ; then \ 539 printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR **********************************************\n" ; \ 540 echo " Please specify LOC variable for eg: make allmanpages LOC=/sandbox/petsc "; \ 541 printf "****************************************************************************"${PETSC_TEXT_NORMAL}"\n" ; false; fi 542 @${MKDIR} ${LOC}/manualpages 543 544chk_c2html: 545 @if [ ${C2HTML}foo = foo ] ; then \ 546 printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR ************************\n" ; \ 547 echo "Require c2html for html docs. Please reconfigure with --download-c2html=1"; \ 548 printf "******************************************************"${PETSC_TEXT_NORMAL}"\n" ;false; fi 549 550 551# the ACTION=manualpages cannot run in parallel because they all write to the same manualpages.cit file 552hloc=include/petsc/private 553allmanpages: chk_loc deletemanualpages 554 -echo " /* SUBMANSEC = PetscH */ " > ${hloc}/generated_khash.h 555 -sed -e 's?<T>?I?g' -e 's?<t>?i?g' -e 's?<KeyType>?PetscInt?g' ${hloc}/hashset.txt >> ${hloc}/generated_khash.h 556 -sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' ${hloc}/hashset.txt >> ${hloc}/generated_khash.h 557 -sed -e 's?<T>?I?g' -e 's?<t>?i?g' -e 's?<KeyType>?PetscInt?g' -e 's?<ValType>?PetscInt?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 558 -sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' -e 's?<ValType>?PetscInt?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 559 -sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' -e 's?<ValType>?PetscScalar?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 560 -sed -e 's?<T>?IV?g' -e 's?<t>?iv?g' -e 's?<KeyType>?PetscInt?g' -e 's?<ValType>?PetscScalar?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 561 -sed -e 's?<T>?Obj?g' -e 's?<t>?obj?g' -e 's?<KeyType>?PetscInt64?g' -e 's?<ValType>?PetscObject?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 562 -${RM} ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err 563 -${OMAKE_SELF} ACTION=manualpages tree_src LOC=${LOC} 564 -@sed -e s%man+../%man+manualpages/% ${LOC}/manualpages/manualpages.cit > ${LOC}/manualpages/htmlmap 565 -@cat ${PETSC_DIR}/doc/classic/mpi.www.index >> ${LOC}/manualpages/htmlmap 566 cat ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err 567 a=`cat ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err | wc -l`; test ! $$a -gt 0 568 569allmanexamples: chk_loc allmanpages 570 -${OMAKE_SELF} ACTION=manexamples tree LOC=${LOC} 571 572# 573# Goes through all manual pages adding links to implementations of the method 574# or class, at the end of the file. 575# 576# To find functions implementing methods, we use git grep to look for 577# well-formed PETSc functions 578# - with names containing a single underscore 579# - in files of appropriate types (.cu .c .cxx .h), 580# - in paths including "/impls/", 581# - excluding any line with a semicolon (to avoid matching prototypes), and 582# - excluding any line including "_Private", 583# storing potential matches in implsFuncAll.txt. 584# 585# For each man page we then grep in this file for the item's name followed by 586# a single underscore and process the resulting implsFunc.txt to generate HTML. 587# 588# To find class implementations, we populate implsClassAll.txt with candidates 589# - of the form "struct _p_itemName {", and 590# - not containing a semicolon 591# and then grep for particular values of itemName, generating implsClass.txt, 592# which is processed to generate HTML. 593# 594# Note: PETSC_DOC_OUT_ROOT_PLACEHOLDER must match the term used elsewhere in doc/ 595manimplementations: 596 -@git grep "struct\s\+_[pn]_[^\s]\+.*{" -- *.cpp *.cu *.c *.h *.cxx | grep -v -e ";" -e "/tests/" -e "/tutorials/" > implsClassAll.txt ; \ 597 git grep -n "^\(static \)\?\(PETSC_EXTERN \)\?\(PETSC_INTERN \)\?\(extern \)\?PetscErrorCode \+[^_ ]\+_[^_ ]\+(" -- '*/impls/*.c' '*/impls/*.cpp' '*/impls/*.cu' '*/impls/*.cxx' '*/impls/*.h' | grep -v -e ";" -e "_[Pp]rivate" > implsFuncAll.txt ; \ 598 for i in ${LOC}/manualpages/*/*.md foo; do \ 599 if [ "$$i" != "foo" ] ; then \ 600 itemName=`basename $$i .md`;\ 601 grep "\s$${itemName}_" implsFuncAll.txt > implsFunc.txt ; \ 602 grep "_p_$${itemName}\b" implsClassAll.txt > implsClass.txt ; \ 603 if [ -s implsFunc.txt ] || [ -s implsClass.txt ] ; then \ 604 printf "\n## Implementations\n\n" >> $$i; \ 605 fi ; \ 606 if [ -s implsFunc.txt ] ; then \ 607 sed "s?\(.*\.[ch]x*u*\).*\($${itemName}.*\)(.*)?<A HREF=\"PETSC_DOC_OUT_ROOT_PLACEHOLDER/\1.html#\2\">\2 in \1</A><BR>?" implsFunc.txt >> $$i ; \ 608 fi ; \ 609 if [ -s implsClass.txt ] ; then \ 610 sed "s?\(.*\.[ch]x*u*\):.*\(_p_$${itemName}\)\b.*{?<A HREF=\"PETSC_DOC_OUT_ROOT_PLACEHOLDER/\1.html#\2\">\2 in \1</A><BR>?" implsClass.txt >> $$i ; \ 611 fi ; \ 612 ${RM} implsFunc.txt implsClass.txt; \ 613 fi ; \ 614 done ; \ 615 ${RM} implsClassAll.txt implsFuncAll.txt 616 617# Build all classic docs except html sources 618alldoc_pre: chk_loc allmanpages allmanexamples 619 -${OMAKE_SELF} LOC=${LOC} manimplementations 620 -${PYTHON} lib/petsc/bin/maint/wwwindex.py ${PETSC_DIR} ${LOC} 621 622# Run after alldoc_pre to build html sources 623alldoc_post: chk_loc chk_c2html 624 -@if command -v parallel &> /dev/null; then \ 625 ls include/makefile src/*/makefile | xargs dirname | parallel -j ${MAKE_TEST_NP} --load ${MAKE_LOAD} 'cd {}; ${OMAKE_SELF} LOC=${LOC} PETSC_DIR=${PETSC_DIR} ACTION=html tree' ; \ 626 else \ 627 ${OMAKE_SELF} ACTION=html PETSC_DIR=${PETSC_DIR} tree LOC=${LOC}; \ 628 fi 629 630alldocclean: deletemanualpages allcleanhtml 631 632# Deletes man pages (.md version) 633deletemanualpages: chk_loc 634 -@if [ -d ${LOC} -a -d ${LOC}/manualpages ]; then \ 635 find ${LOC}/manualpages -type f -name "*.md" -exec ${RM} {} \; ;\ 636 ${RM} ${LOC}/manualpages/manualpages.cit ;\ 637 fi 638 639allcleanhtml: 640 -${OMAKE_SELF} ACTION=cleanhtml PETSC_DIR=${PETSC_DIR} tree 641 642# ********* Rules for checking code coverage ********************************************************************************************* 643 644gcov: 645 output_file_base_name=${PETSC_ARCH}-gcovr-report.json; \ 646 petsc_arch_dir=${PETSC_DIR}/${PETSC_ARCH}; \ 647 tar_file=$${petsc_arch_dir}/$${output_file_base_name}.tar.bz2; \ 648 cd $${petsc_arch_dir}/obj && \ 649 gcovr --json --output $${petsc_arch_dir}/$${output_file_base_name} --exclude '.*/ftn-auto/.*' --exclude-lines-by-pattern '^\s*SETERR.*' --exclude-throw-branches --exclude-unreachable-branches -j 4 --gcov-executable "${PETSC_COVERAGE_EXEC}" --root ${PETSC_DIR} . ${PETSC_GCOV_OPTIONS} && \ 650 ${RM} -f $${tar_file} && \ 651 tar --bzip2 -cf $${tar_file} -C $${petsc_arch_dir} ./$${output_file_base_name} && \ 652 ${RM} $${petsc_arch_dir}/$${output_file_base_name} 653 654mergegcov: 655 $(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/gcov.py --merge-branch `lib/petsc/bin/maint/check-merge-branch.sh` --html --xml ${PETSC_GCOV_OPTIONS} 656 657#********* Rules for make clangformat and checking violation of coding standards ************************************************************** 658 659# Format all the source code in the given directory and down according to the file .clang_format 660clangformat: 661 -@git --no-pager ls-files -z ${GITCFSRC} | xargs -0 -P $(MAKE_NP) -L 10 clang-format -i 662 663GITSRC = '*.[chF]' '*.F90' '*.hpp' '*.cpp' '*.cxx' '*.cu' ${GITSRCEXCL} 664GITSRCEXCL = \ 665':!*khash/*' \ 666':!*valgrind/*' \ 667':!*yaml/*' \ 668':!*perfstubs/*' 669GITCFSRC = '*.[ch]' '*.hpp' '*.cpp' '*.cxx' '*.cu' ${GITSRCEXCL} ${GITCFSRCEXCL} 670GITCFSRCEXCL = \ 671':!*petscversion.h' \ 672':!*mpif.h' \ 673':!*mpiunifdef.h' \ 674':!*finclude/*' \ 675':!systems/*' \ 676':!*benchmarks/*' \ 677':!*binding/*' \ 678':!*-custom/*' \ 679':!*f90-mod/*' 680 681checkbadSource: 682 @git --no-pager grep -n -P 'self\.gitcommit' -- config/BuildSystem/config/packages | grep 'origin/' ; if [[ "$$?" == "0" ]]; then echo "Error: Do not use a branch name in a configure package file"; false; fi 683 -@${RM} -f checkbadSource.out 684 -@echo "------Double blank lines in file -----------------------------------" > checkbadSource.out 685 -@git --no-pager grep -n -P '^$$' -- ${GITSRC} > doublelinecheck.out 686 -@${PYTHON} ${PETSC_DIR}/lib/petsc/bin/maint/doublelinecheck.py doublelinecheck.out >> checkbadSource.out 687 -@${RM} -f doublelinecheck.out 688 -@echo "------Tabs in file -------------------------------------------------" >> checkbadSource.out 689 -@git --no-pager grep -n -P '\t' -- ${GITSRC} >> checkbadSource.out;true 690 -@echo "------White space at end of line -----------------------------------" >> checkbadSource.out 691 -@git --no-pager grep -n -P ' $$' -- ${GITSRC} >> checkbadSource.out;true 692 -@echo "------Two ;; -------------------------------------------------------" >> checkbadSource.out 693 -@git --no-pager grep -n -P -e ';;' -- ${GITSRC} | grep -v ' for (' >> checkbadSource.out;true 694 -@echo "------PetscCall for an MPI error code ------------------------------" >> checkbadSource.out 695 -@git --no-pager grep -n -P -e '= MPI[U]*_\w*\(.*PetscCall' -- ${GITSRC} | grep -v MPIU_File >> checkbadSource.out;true 696 -@echo "------Missing if (ierr) return ierr; -------------------------------" >> checkbadSource.out 697 -@git --no-pager grep -n -P -e 'ierr = PetscInitialize\(' -- '*.[ch]' '*.cpp' '*.cxx' '*.cu' | grep -v 'if (ierr) return ierr;' | grep -E "(test|tutorial)" >> checkbadSource.out;true 698 -@echo "------DOS file (with DOS newlines) ---------------------------------" >> checkbadSource.out 699 -@git --no-pager grep -n -P '\r' -- ${GITSRC} >> checkbadSource.out;true 700 -@echo "------{ before SETERRQ ---------------------------------------------" >> checkbadSource.out 701 -@git --no-pager grep -n -P '{SETERRQ' -- ${GITSRC} >> checkbadSource.out;true 702 -@echo "------PetscCall following SETERRQ ----------------------------------" >> checkbadSource.out 703 -@git --no-pager grep -n -P 'SETERRQ' -- ${GITSRC} | grep ";PetscCall" >> checkbadSource.out;true 704 -@echo "------SETERRQ() without defined error code -------------------------" >> checkbadSource.out 705 -@git --no-pager grep -n -P 'SETERRQ\((?!\))' -- ${GITSRC} | grep -v PETSC_ERR | grep " if " | grep -v "__VA_ARGS__" | grep -v flow.c >> checkbadSource.out;true 706 -@echo "------SETERRQ() with trailing newline ------------------------------" >> checkbadSource.out 707 -@git --no-pager grep -n -P "SETERRQ[1-9]?.*\\\n\"" -- ${GITSRC} >> checkbadSource.out;true 708 -@echo "------Define keyword used in test definition -----------------------" >> checkbadSource.out 709 -@git --no-pager grep -n -P -e 'requires:.*define\(' -- ${GITSRC} >> checkbadSource.out;true 710 -@echo "------No new line at end of file -----------------------------------" >> checkbadSource.out 711 -@git --no-pager grep -n -P '[^\n]\z' -- ${GITSRC} >> checkbadSource.out;true 712 -@echo "------Using if (condition) SETERRQ(...) instead of PetscCheck() ----" >> checkbadSource.out 713 -@git --no-pager grep -n -P ' if +(.*) *SETERRQ' -- ${GITSRC} | grep -v 'PetscUnlikelyDebug' | grep -v 'petscerror.h' >> checkbadSource.out;true 714 -@echo "------Using if (PetscUnlikelyDebug(condition)) SETERRQ(...) instead of PetscAssert()" >> checkbadSource.out 715 -@git --no-pager grep -n -P -E ' if +\(PetscUnlikelyDebug.*\) *SETERRQ' -- ${GITSRC} | grep -v petscerror.h >> checkbadSource.out;true 716 -@echo "------Using PetscFunctionReturn(ierr) ------------------------------" >> checkbadSource.out 717 -@git --no-pager grep -n -P 'PetscFunctionReturn(ierr)' -- ${GITSRC} >> checkbadSource.out;true 718 -@echo "------Defining a returning macro without PetscMacroReturns() -------" >> checkbadSource.out 719 -@git --no-pager grep -n -P 'define .*\w+;\s+do' -- ${GITSRC} | grep -E -v '(PetscMacroReturns|PetscDrawCollectiveBegin|MatPreallocateBegin|PetscOptionsBegin|PetscObjectOptionsBegin|PetscOptionsHeadEnd)' >> checkbadSource.out;true 720 -@echo "------Defining an error checking macro using CHKERR style ----------" >> checkbadSource.out 721 -@git --no-pager grep -n -P 'define\s+CHKERR\w*\(.*\)\s*do\s+{' -- ${GITSRC} >> checkbadSource.out;true 722 @a=`cat checkbadSource.out | wc -l`; l=`expr $$a - 18` ;\ 723 if [ $$l -gt 0 ] ; then \ 724 echo $$l " files with errors detected in source code formatting" ;\ 725 cat checkbadSource.out ;\ 726 else \ 727 ${RM} -f checkbadSource.out;\ 728 fi;\ 729 test ! $$l -gt 0 730 -@git --no-pager grep -P -n "[\x00-\x08\x0E-\x1F\x80-\xFF]" -- ${GITSRC} > badSourceChar.out;true 731 -@w=`cat badSourceChar.out | wc -l`;\ 732 if [ $$w -gt 0 ] ; then \ 733 echo "Source files with non-ASCII characters ----------------" ;\ 734 cat badSourceChar.out ;\ 735 else \ 736 ${RM} -f badSourceChar.out;\ 737 fi 738 @test ! -s badSourceChar.out 739 740checkbadFileChange: 741 @git diff --stat --exit-code `lib/petsc/bin/maint/check-merge-branch.sh`..HEAD -- src/sys/yaml/src src/sys/yaml/include src/sys/yaml/License include/petsc/private/valgrind include/petsc/private/kash 742 743vermin: 744 @vermin -vvv -t=3.4- ${VERMIN_OPTIONS} ${PETSC_DIR}/config 745 746lint: 747 ${PYTHON} ${PETSC_DIR}/lib/petsc/bin/maint/petsclinter --verbose=${V} --apply-patches=${REPLACE} $(LINTER_OPTIONS) 748 749help-lint: 750 @${PYTHON} ${PETSC_DIR}/lib/petsc/bin/maint/petsclinter --help 751 -@echo "Basic usage:" 752 -@echo " make lint <options>" 753 -@echo " make test-lint <options> <test only options>" 754 -@echo 755 -@echo "Options:" 756 -@echo " V=[1,0] Enable or disable verbose output" 757 -@echo " LINTER_OPTIONS=\"--opt1 --opt2 ...\" See above for available options" 758 -@echo 759 -@echo "Test Only Options:" 760 -@echo " REPLACE=[1,0] Enable or disable replacing test output" 761 -@echo 762 763test-lint: 764 ${PYTHON} ${PETSC_DIR}/lib/petsc/bin/maint/petsclinter ${PETSC_DIR}/src/sys/tests/linter --test -j0 --werror --replace=${REPLACE} --verbose=${V} $(LINTER_OPTIONS) 765 766countfortranfunctions: 767 -@cd ${PETSC_DIR}/src/fortran; grep -E '^void' custom/*.c auto/*.c | \ 768 cut -d'(' -f1 | tr -s ' ' | cut -d' ' -f2 | uniq | grep -E -v "(^$$|Petsc)" | \ 769 sed "s/_$$//" | sort > /tmp/countfortranfunctions 770 771countcfunctions: 772 -@grep PETSC_EXTERN ${PETSC_DIR}/include/*.h | grep "(" | tr -s ' ' | \ 773 cut -d'(' -f1 | cut -d' ' -f3 | grep -v "\*" | tr -s '\012' | \ 774 tr 'A-Z' 'a-z' | sort | uniq > /tmp/countcfunctions 775 776difffortranfunctions: countfortranfunctions countcfunctions 777 -@echo -------------- Functions missing in the fortran interface --------------------- 778 -@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^<" | cut -d' ' -f2 779 -@echo ----------------- Functions missing in the C interface ------------------------ 780 -@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^>" | cut -d' ' -f2 781 -@${RM} /tmp/countcfunctions /tmp/countfortranfunctions 782 783checkbadfortranstubs: 784 -@echo "=========================================" 785 -@echo "Functions with MPI_Comm as an Argument" 786 -@echo "=========================================" 787 -@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'MPI_Comm' | \ 788 tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3 789 -@echo "=========================================" 790 -@echo "Functions with a String as an Argument" 791 -@echo "=========================================" 792 -@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'char \*' | \ 793 tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3 794 -@echo "=========================================" 795 -@echo "Functions with Pointers to PETSc Objects as Argument" 796 -@echo "=========================================" 797 -@cd ${PETSC_DIR}/src/fortran/auto; \ 798 _p_OBJ=`grep _p_ ${PETSC_DIR}/include/*.h | tr -s ' ' | \ 799 cut -d' ' -f 3 | tr -s '\012' | grep -v '{' | cut -d'*' -f1 | \ 800 sed "s/_p_//g" | tr -s '\012 ' ' *|' ` ; \ 801 for OBJ in $$_p_OBJ; do \ 802 grep "$$OBJ \*" *.c | tr -s ' ' | tr -s ':' ' ' | \ 803 cut -d'(' -f1 | cut -d' ' -f1,3; \ 804 done 805 806checkpackagetests: 807 -@echo "Missing package tests" 808 -@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`ls *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(with-$${j}|download-$${j})" configexamples | grep -v "=0" | wc -l ; done 809 -@echo "Missing download package tests" 810 -@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`grep -l "download " *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(download-$${j})" configexamples | grep -v "=0" | wc -l ; done 811 812check_petsc4py_rst: 813 @${RM} -f petsc4py_rst.log 814 @echo "Checking src/binding/petsc4py/DESCRIPTION.rst" 815 @rst2html src/binding/petsc4py/DESCRIPTION.rst > /dev/null 2> petsc4py_rst.log 816 @if test -s petsc4py_rst.log; then cat petsc4py_rst.log; exit 1; fi 817 818# TODO: checkTestCoverage: that makes sure every tutorial test has at least one test listed in the file, perhaps handled by gmakegentest.py 819# TODO: check for PetscBeginFunctionUser in non-example source 820# TODO: check for __ at start of #define or symbol 821# TODO: checking for missing manual pages 822# TODO: check for incorrect %d 823# TODO: check for double blank lines 824# TODO: check for ill-formed manual pages 825# TODO: check for { on line after for 826# TODO: check for } then else on following line 827# TODO: check for } else { with SETERRQ on following line or if () { with SETERRQ on following line 828 829# Lists all the URLs in the PETSc repository that are unaccessible, nonexistent, or permanently moved (301) 830# REPLACE=1 locations marked as permanently moved (301) are replaced in the repository 831# This code is fragile; always check the changes after a use of REPLACE=1 before committing the changes 832# 833# Notes: 834# The first tr in the line is split lines for the cases where multiple URLs are in the same line 835# The first sed handles the case (http[s]*://xxx) 836# The list is sorted by length so that if REPLACE is used the longer apply before the shorter 837# The code recursively follows the permanently moved (301) redirections until it reaches the final URL 838# For DropBox we need to check the validity of the new URL but do not want to return to user the internal "raw" URL 839checkbadURLS: 840 -@x=`git grep "http[s]*://" -- '*.[chF]' '*.html' '*.cpp' '*.cxx' '*.cu' '*.F90' '*.py' '*.tex' | grep -E -v "(config/packages|HandsOnExercises)" | tr '[[:blank:]]' '\n' | grep 'http[s]*://' | sed 's!.*(\(http[s]*://[-a-zA-Z0-9_./()?=&+%~]*\))!\1!g' | sed 's!.*\(http[s]*://[-a-zA-Z0-9_./()?=&+%~]*\).*!\1!g' | sed 's/\.$$//g' | sort | uniq| awk '{ print length, $$0 }' | sort -r -n -s | cut -d" " -f2` ; \ 841 for i in $$x; do \ 842 url=$$i; \ 843 msg=''; \ 844 while [[ "$${msg}D" == "D" ]] ; do \ 845 y1=`curl --connect-timeout 5 --head --silent $${url} | head -n 1`; \ 846 y2=`echo $${y1} | grep ' 4[0-9]* '`; \ 847 y3=`echo $${y1} | grep ' 301 '`; \ 848 if [[ "$${y1}D" == "D" ]] ; then \ 849 msg="Unable to reach site" ; \ 850 elif [[ "$${y2}D" != "D" ]] ; then \ 851 msg=$${y1} ; \ 852 elif [[ "$${y3}D" != "D" ]] ; then \ 853 l=`curl --connect-timeout 5 --head --silent $${url} | grep ocation | sed 's/.*ocation:[[:blank:]]\(.*\)/\1/g' | tr -d '\r'` ; \ 854 w=`echo $$l | grep 'http'` ; \ 855 if [[ "$${w}D" != "D" ]] ; then \ 856 url=$$l ; \ 857 else \ 858 ws=`echo $${url} | sed 's!\(http[s]*://[-a-zA-Z0-9_.]*\)/.*!\1!g'` ; \ 859 dp=`echo $${ws}$${l} | grep "dropbox.com/s/raw"` ; \ 860 if [[ "$${dp}D" != "D" ]] ; then \ 861 b=`curl --connect-timeout 5 --head --silent $${ws}$$l | head -n 1` ; \ 862 c=`echo $${b} | grep -E "( 2[0-9]* | 302 )"` ; \ 863 if [[ "$${c}D" == "D" ]] ; then \ 864 msg=`echo "dropbox file doesn't exist" $${c}` ; \ 865 else \ 866 break ; \ 867 fi; \ 868 else \ 869 url="$${ws}$$l" ; \ 870 fi; \ 871 fi; \ 872 else \ 873 break; \ 874 fi; \ 875 done;\ 876 if [[ "$${msg}D" == "D" && "$${url}" != "$$i" ]] ; then \ 877 echo "URL" $$i "has moved to valid final location:" $${url} ; \ 878 if [[ "$${REPLACE}D" != "D" ]] ; then \ 879 git psed $$i $$l ;\ 880 fi; \ 881 elif [[ "$${msg}D" != "D" && "$${url}" != "$$i" ]] ; then \ 882 echo "ERROR: URL" $$i "has moved to invalid final location:" $${url} $${msg} ; \ 883 elif [[ "$${msg}D" != "D" ]] ; then \ 884 echo "ERROR: URL" $$i "invalid:" $${msg} ; \ 885 fi; \ 886 done 887 888checkbadSpelling: 889 -@x=`python3 ../bin/extract.py | aspell list | sort -u` ; 890 891updatedatafiles: 892 -@if [ -d "${HOME}/datafiles" ]; then \ 893 echo " ** Updating datafiles at ${HOME}/datafiles **"; \ 894 cd "${HOME}/datafiles" && git pull -q; fi 895 896.PHONY: info info_h all deletelibs allclean update \ 897 alletags etags etags_complete etags_noexamples etags_makefiles etags_examples etags_fexamples alldoc allmanpages \ 898 allcleanhtml countfortranfunctions \ 899 start_configure configure_petsc configure_clean matlabbin install 900