xref: /petsc/src/dm/dt/fe/impls/basic/febasic.c (revision 45480ffeba491aca5d3f3b8c78679069fb317d32)
120cf1dd8SToby Isaac #include <petsc/private/petscfeimpl.h> /*I "petscfe.h" I*/
220cf1dd8SToby Isaac #include <petscblaslapack.h>
320cf1dd8SToby Isaac 
42b99622eSMatthew G. Knepley static PetscErrorCode PetscFEDestroy_Basic(PetscFE fem)
520cf1dd8SToby Isaac {
620cf1dd8SToby Isaac   PetscFE_Basic *b = (PetscFE_Basic *) fem->data;
720cf1dd8SToby Isaac   PetscErrorCode ierr;
820cf1dd8SToby Isaac 
920cf1dd8SToby Isaac   PetscFunctionBegin;
1020cf1dd8SToby Isaac   ierr = PetscFree(b);CHKERRQ(ierr);
1120cf1dd8SToby Isaac   PetscFunctionReturn(0);
1220cf1dd8SToby Isaac }
1320cf1dd8SToby Isaac 
142b99622eSMatthew G. Knepley static PetscErrorCode PetscFEView_Basic_Ascii(PetscFE fe, PetscViewer v)
1520cf1dd8SToby Isaac {
16d9bac1caSLisandro Dalcin   PetscInt          dim, Nc;
17d9bac1caSLisandro Dalcin   PetscSpace        basis = NULL;
18d9bac1caSLisandro Dalcin   PetscDualSpace    dual = NULL;
19d9bac1caSLisandro Dalcin   PetscQuadrature   quad = NULL;
2020cf1dd8SToby Isaac   PetscErrorCode    ierr;
2120cf1dd8SToby Isaac 
2220cf1dd8SToby Isaac   PetscFunctionBegin;
23d9bac1caSLisandro Dalcin   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
24d9bac1caSLisandro Dalcin   ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
2520cf1dd8SToby Isaac   ierr = PetscFEGetBasisSpace(fe, &basis);CHKERRQ(ierr);
2620cf1dd8SToby Isaac   ierr = PetscFEGetDualSpace(fe, &dual);CHKERRQ(ierr);
27d9bac1caSLisandro Dalcin   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
28d9bac1caSLisandro Dalcin   ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr);
29d9bac1caSLisandro Dalcin   ierr = PetscViewerASCIIPrintf(v, "Basic Finite Element in %D dimensions with %D components\n",dim,Nc);CHKERRQ(ierr);
30d9bac1caSLisandro Dalcin   if (basis) {ierr = PetscSpaceView(basis, v);CHKERRQ(ierr);}
31d9bac1caSLisandro Dalcin   if (dual)  {ierr = PetscDualSpaceView(dual, v);CHKERRQ(ierr);}
32d9bac1caSLisandro Dalcin   if (quad)  {ierr = PetscQuadratureView(quad, v);CHKERRQ(ierr);}
33d9bac1caSLisandro Dalcin   ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr);
3420cf1dd8SToby Isaac   PetscFunctionReturn(0);
3520cf1dd8SToby Isaac }
3620cf1dd8SToby Isaac 
372b99622eSMatthew G. Knepley static PetscErrorCode PetscFEView_Basic(PetscFE fe, PetscViewer v)
3820cf1dd8SToby Isaac {
3920cf1dd8SToby Isaac   PetscBool      iascii;
4020cf1dd8SToby Isaac   PetscErrorCode ierr;
4120cf1dd8SToby Isaac 
4220cf1dd8SToby Isaac   PetscFunctionBegin;
43d9bac1caSLisandro Dalcin   ierr = PetscObjectTypeCompare((PetscObject) v, PETSCVIEWERASCII, &iascii);CHKERRQ(ierr);
44d9bac1caSLisandro Dalcin   if (iascii) {ierr = PetscFEView_Basic_Ascii(fe, v);CHKERRQ(ierr);}
4520cf1dd8SToby Isaac   PetscFunctionReturn(0);
4620cf1dd8SToby Isaac }
4720cf1dd8SToby Isaac 
4820cf1dd8SToby Isaac /* Construct the change of basis from prime basis to nodal basis */
49526996e7SStefano Zampini PETSC_INTERN PetscErrorCode PetscFESetUp_Basic(PetscFE fem)
5020cf1dd8SToby Isaac {
51b9d4cb8dSJed Brown   PetscReal     *work;
5220cf1dd8SToby Isaac   PetscBLASInt  *pivots;
5320cf1dd8SToby Isaac   PetscBLASInt   n, info;
5420cf1dd8SToby Isaac   PetscInt       pdim, j;
5520cf1dd8SToby Isaac   PetscErrorCode ierr;
5620cf1dd8SToby Isaac 
5720cf1dd8SToby Isaac   PetscFunctionBegin;
5820cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDimension(fem->dualSpace, &pdim);CHKERRQ(ierr);
5920cf1dd8SToby Isaac   ierr = PetscMalloc1(pdim*pdim,&fem->invV);CHKERRQ(ierr);
6020cf1dd8SToby Isaac   for (j = 0; j < pdim; ++j) {
6120cf1dd8SToby Isaac     PetscReal       *Bf;
6220cf1dd8SToby Isaac     PetscQuadrature  f;
6320cf1dd8SToby Isaac     const PetscReal *points, *weights;
6420cf1dd8SToby Isaac     PetscInt         Nc, Nq, q, k, c;
6520cf1dd8SToby Isaac 
6620cf1dd8SToby Isaac     ierr = PetscDualSpaceGetFunctional(fem->dualSpace, j, &f);CHKERRQ(ierr);
6720cf1dd8SToby Isaac     ierr = PetscQuadratureGetData(f, NULL, &Nc, &Nq, &points, &weights);CHKERRQ(ierr);
6820cf1dd8SToby Isaac     ierr = PetscMalloc1(Nc*Nq*pdim,&Bf);CHKERRQ(ierr);
6920cf1dd8SToby Isaac     ierr = PetscSpaceEvaluate(fem->basisSpace, Nq, points, Bf, NULL, NULL);CHKERRQ(ierr);
7020cf1dd8SToby Isaac     for (k = 0; k < pdim; ++k) {
7120cf1dd8SToby Isaac       /* V_{jk} = n_j(\phi_k) = \int \phi_k(x) n_j(x) dx */
72b9d4cb8dSJed Brown       fem->invV[j*pdim+k] = 0.0;
7320cf1dd8SToby Isaac 
7420cf1dd8SToby Isaac       for (q = 0; q < Nq; ++q) {
75b9d4cb8dSJed Brown         for (c = 0; c < Nc; ++c) fem->invV[j*pdim+k] += Bf[(q*pdim + k)*Nc + c]*weights[q*Nc + c];
7620cf1dd8SToby Isaac       }
7720cf1dd8SToby Isaac     }
7820cf1dd8SToby Isaac     ierr = PetscFree(Bf);CHKERRQ(ierr);
7920cf1dd8SToby Isaac   }
80ea2bdf6dSBarry Smith 
8120cf1dd8SToby Isaac   ierr = PetscMalloc2(pdim,&pivots,pdim,&work);CHKERRQ(ierr);
8220cf1dd8SToby Isaac   n = pdim;
83b9d4cb8dSJed Brown   PetscStackCallBLAS("LAPACKgetrf", LAPACKREALgetrf_(&n, &n, fem->invV, &n, pivots, &info));
84ea2bdf6dSBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetrf %D",(PetscInt)info);
85b9d4cb8dSJed Brown   PetscStackCallBLAS("LAPACKgetri", LAPACKREALgetri_(&n, fem->invV, &n, pivots, work, &n, &info));
86ea2bdf6dSBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetri %D",(PetscInt)info);
8720cf1dd8SToby Isaac   ierr = PetscFree2(pivots,work);CHKERRQ(ierr);
8820cf1dd8SToby Isaac   PetscFunctionReturn(0);
8920cf1dd8SToby Isaac }
9020cf1dd8SToby Isaac 
9120cf1dd8SToby Isaac PetscErrorCode PetscFEGetDimension_Basic(PetscFE fem, PetscInt *dim)
9220cf1dd8SToby Isaac {
9320cf1dd8SToby Isaac   PetscErrorCode ierr;
9420cf1dd8SToby Isaac 
9520cf1dd8SToby Isaac   PetscFunctionBegin;
9620cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDimension(fem->dualSpace, dim);CHKERRQ(ierr);
9720cf1dd8SToby Isaac   PetscFunctionReturn(0);
9820cf1dd8SToby Isaac }
9920cf1dd8SToby Isaac 
100b9d4cb8dSJed Brown /* Tensor contraction on the middle index,
101b9d4cb8dSJed Brown  *    C[m,n,p] = A[m,k,p] * B[k,n]
102b9d4cb8dSJed Brown  * where all matrices use C-style ordering.
103b9d4cb8dSJed Brown  */
104bdb10af2SPierre Jolivet static PetscErrorCode TensorContract_Private(PetscInt m,PetscInt n,PetscInt p,PetscInt k,const PetscReal *A,const PetscReal *B,PetscReal *C)
105bdb10af2SPierre Jolivet {
106b9d4cb8dSJed Brown   PetscErrorCode ierr;
107b9d4cb8dSJed Brown   PetscInt i;
108b9d4cb8dSJed Brown 
109b9d4cb8dSJed Brown   PetscFunctionBegin;
110b9d4cb8dSJed Brown   for (i=0; i<m; i++) {
111b9d4cb8dSJed Brown     PetscBLASInt n_,p_,k_,lda,ldb,ldc;
112b9d4cb8dSJed Brown     PetscReal one = 1, zero = 0;
113b9d4cb8dSJed Brown     /* Taking contiguous submatrices, we wish to comput c[n,p] = a[k,p] * B[k,n]
114b9d4cb8dSJed Brown      * or, in Fortran ordering, c(p,n) = a(p,k) * B(n,k)
115b9d4cb8dSJed Brown      */
116b9d4cb8dSJed Brown     ierr = PetscBLASIntCast(n,&n_);CHKERRQ(ierr);
117b9d4cb8dSJed Brown     ierr = PetscBLASIntCast(p,&p_);CHKERRQ(ierr);
118b9d4cb8dSJed Brown     ierr = PetscBLASIntCast(k,&k_);CHKERRQ(ierr);
119b9d4cb8dSJed Brown     lda = p_;
120b9d4cb8dSJed Brown     ldb = n_;
121b9d4cb8dSJed Brown     ldc = p_;
122b9d4cb8dSJed Brown     PetscStackCallBLAS("BLASgemm",BLASREALgemm_("N","T",&p_,&n_,&k_,&one,A+i*k*p,&lda,B,&ldb,&zero,C+i*n*p,&ldc));
123b9d4cb8dSJed Brown   }
1246485a3bbSJed Brown   ierr = PetscLogFlops(2.*m*n*p*k);CHKERRQ(ierr);
125b9d4cb8dSJed Brown   PetscFunctionReturn(0);
126b9d4cb8dSJed Brown }
127b9d4cb8dSJed Brown 
128526996e7SStefano Zampini PETSC_INTERN PetscErrorCode PetscFECreateTabulation_Basic(PetscFE fem, PetscInt npoints, const PetscReal points[], PetscInt K, PetscTabulation T)
12920cf1dd8SToby Isaac {
13020cf1dd8SToby Isaac   DM               dm;
13120cf1dd8SToby Isaac   PetscInt         pdim; /* Dimension of FE space P */
13220cf1dd8SToby Isaac   PetscInt         dim;  /* Spatial dimension */
13320cf1dd8SToby Isaac   PetscInt         Nc;   /* Field components */
134ef0bb6c7SMatthew G. Knepley   PetscReal       *B = K >= 0 ? T->T[0] : NULL;
135ef0bb6c7SMatthew G. Knepley   PetscReal       *D = K >= 1 ? T->T[1] : NULL;
136ef0bb6c7SMatthew G. Knepley   PetscReal       *H = K >= 2 ? T->T[2] : NULL;
137ef0bb6c7SMatthew G. Knepley   PetscReal       *tmpB = NULL, *tmpD = NULL, *tmpH = NULL;
13820cf1dd8SToby Isaac   PetscErrorCode   ierr;
13920cf1dd8SToby Isaac 
14020cf1dd8SToby Isaac   PetscFunctionBegin;
14120cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDM(fem->dualSpace, &dm);CHKERRQ(ierr);
14220cf1dd8SToby Isaac   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
14320cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDimension(fem->dualSpace, &pdim);CHKERRQ(ierr);
14420cf1dd8SToby Isaac   ierr = PetscFEGetNumComponents(fem, &Nc);CHKERRQ(ierr);
14520cf1dd8SToby Isaac   /* Evaluate the prime basis functions at all points */
146ef0bb6c7SMatthew G. Knepley   if (K >= 0) {ierr = DMGetWorkArray(dm, npoints*pdim*Nc, MPIU_REAL, &tmpB);CHKERRQ(ierr);}
147ef0bb6c7SMatthew G. Knepley   if (K >= 1) {ierr = DMGetWorkArray(dm, npoints*pdim*Nc*dim, MPIU_REAL, &tmpD);CHKERRQ(ierr);}
148ef0bb6c7SMatthew G. Knepley   if (K >= 2) {ierr = DMGetWorkArray(dm, npoints*pdim*Nc*dim*dim, MPIU_REAL, &tmpH);CHKERRQ(ierr);}
149ef0bb6c7SMatthew G. Knepley   ierr = PetscSpaceEvaluate(fem->basisSpace, npoints, points, tmpB, tmpD, tmpH);CHKERRQ(ierr);
150b9d4cb8dSJed Brown   /* Translate from prime to nodal basis */
15120cf1dd8SToby Isaac   if (B) {
152b9d4cb8dSJed Brown     /* B[npoints, nodes, Nc] = tmpB[npoints, prime, Nc] * invV[prime, nodes] */
153b9d4cb8dSJed Brown     ierr = TensorContract_Private(npoints, pdim, Nc, pdim, tmpB, fem->invV, B);CHKERRQ(ierr);
15420cf1dd8SToby Isaac   }
15520cf1dd8SToby Isaac   if (D) {
156b9d4cb8dSJed Brown     /* D[npoints, nodes, Nc, dim] = tmpD[npoints, prime, Nc, dim] * invV[prime, nodes] */
157b9d4cb8dSJed Brown     ierr = TensorContract_Private(npoints, pdim, Nc*dim, pdim, tmpD, fem->invV, D);CHKERRQ(ierr);
15820cf1dd8SToby Isaac   }
15920cf1dd8SToby Isaac   if (H) {
160b9d4cb8dSJed Brown     /* H[npoints, nodes, Nc, dim, dim] = tmpH[npoints, prime, Nc, dim, dim] * invV[prime, nodes] */
161b9d4cb8dSJed Brown     ierr = TensorContract_Private(npoints, pdim, Nc*dim*dim, pdim, tmpH, fem->invV, H);CHKERRQ(ierr);
16220cf1dd8SToby Isaac   }
163ef0bb6c7SMatthew G. Knepley   if (K >= 0) {ierr = DMRestoreWorkArray(dm, npoints*pdim*Nc, MPIU_REAL, &tmpB);CHKERRQ(ierr);}
164ef0bb6c7SMatthew G. Knepley   if (K >= 1) {ierr = DMRestoreWorkArray(dm, npoints*pdim*Nc*dim, MPIU_REAL, &tmpD);CHKERRQ(ierr);}
165ef0bb6c7SMatthew G. Knepley   if (K >= 2) {ierr = DMRestoreWorkArray(dm, npoints*pdim*Nc*dim*dim, MPIU_REAL, &tmpH);CHKERRQ(ierr);}
16620cf1dd8SToby Isaac   PetscFunctionReturn(0);
16720cf1dd8SToby Isaac }
16820cf1dd8SToby Isaac 
1692b99622eSMatthew G. Knepley static PetscErrorCode PetscFEIntegrate_Basic(PetscDS ds, PetscInt field, PetscInt Ne, PetscFEGeom *cgeom,
1704bee2e38SMatthew G. Knepley                                              const PetscScalar coefficients[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscScalar integral[])
17120cf1dd8SToby Isaac {
17220cf1dd8SToby Isaac   const PetscInt     debug = 0;
1734bee2e38SMatthew G. Knepley   PetscFE            fe;
17420cf1dd8SToby Isaac   PetscPointFunc     obj_func;
17520cf1dd8SToby Isaac   PetscQuadrature    quad;
176ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
1774bee2e38SMatthew G. Knepley   PetscScalar       *u, *u_x, *a, *a_x;
17820cf1dd8SToby Isaac   const PetscScalar *constants;
17920cf1dd8SToby Isaac   PetscReal         *x;
180ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
18120cf1dd8SToby Isaac   PetscInt           dim, dE, Np, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, e;
18220cf1dd8SToby Isaac   PetscBool          isAffine;
18320cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
18420cf1dd8SToby Isaac   PetscInt           qNc, Nq, q;
18520cf1dd8SToby Isaac   PetscErrorCode     ierr;
18620cf1dd8SToby Isaac 
18720cf1dd8SToby Isaac   PetscFunctionBegin;
1884bee2e38SMatthew G. Knepley   ierr = PetscDSGetObjective(ds, field, &obj_func);CHKERRQ(ierr);
18920cf1dd8SToby Isaac   if (!obj_func) PetscFunctionReturn(0);
1904bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
1914bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
1924bee2e38SMatthew G. Knepley   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
1934bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
1944bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
1954bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
1964bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
197ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
1984bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, NULL, &u_x);CHKERRQ(ierr);
1994bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
2004bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
2014bee2e38SMatthew G. Knepley   if (dsAux) {
2024bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
2034bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
2044bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
2054bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
206ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);
2074bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
20801907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
20920cf1dd8SToby Isaac   }
21020cf1dd8SToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
2114bee2e38SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
21220cf1dd8SToby Isaac   Np = cgeom->numPoints;
21320cf1dd8SToby Isaac   dE = cgeom->dimEmbed;
21420cf1dd8SToby Isaac   isAffine = cgeom->isAffine;
21520cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
2164bee2e38SMatthew G. Knepley     PetscFEGeom fegeom;
21720cf1dd8SToby Isaac 
21827f02ce8SMatthew G. Knepley     fegeom.dim      = cgeom->dim;
21927f02ce8SMatthew G. Knepley     fegeom.dimEmbed = cgeom->dimEmbed;
22020cf1dd8SToby Isaac     if (isAffine) {
2214bee2e38SMatthew G. Knepley       fegeom.v    = x;
2224bee2e38SMatthew G. Knepley       fegeom.xi   = cgeom->xi;
2237132c3f7SMatthew G. Knepley       fegeom.J    = &cgeom->J[e*Np*dE*dE];
2247132c3f7SMatthew G. Knepley       fegeom.invJ = &cgeom->invJ[e*Np*dE*dE];
2257132c3f7SMatthew G. Knepley       fegeom.detJ = &cgeom->detJ[e*Np];
22620cf1dd8SToby Isaac     }
2274bee2e38SMatthew G. Knepley     for (q = 0; q < Nq; ++q) {
2284bee2e38SMatthew G. Knepley       PetscScalar integrand;
2294bee2e38SMatthew G. Knepley       PetscReal   w;
2304bee2e38SMatthew G. Knepley 
2314bee2e38SMatthew G. Knepley       if (isAffine) {
2327132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &cgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*dim], x);
2334bee2e38SMatthew G. Knepley       } else {
2344bee2e38SMatthew G. Knepley         fegeom.v    = &cgeom->v[(e*Np+q)*dE];
2354bee2e38SMatthew G. Knepley         fegeom.J    = &cgeom->J[(e*Np+q)*dE*dE];
2364bee2e38SMatthew G. Knepley         fegeom.invJ = &cgeom->invJ[(e*Np+q)*dE*dE];
2374bee2e38SMatthew G. Knepley         fegeom.detJ = &cgeom->detJ[e*Np+q];
2384bee2e38SMatthew G. Knepley       }
2394bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
24020cf1dd8SToby Isaac       if (debug > 1 && q < Np) {
2414bee2e38SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
2427be5e748SToby Isaac #if !defined(PETSC_USE_COMPLEX)
2434bee2e38SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
24420cf1dd8SToby Isaac #endif
24520cf1dd8SToby Isaac       }
24620cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
247ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], NULL, u, u_x, NULL);CHKERRQ(ierr);
248ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, 0, q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
2494bee2e38SMatthew G. Knepley       obj_func(dim, Nf, NfAux, uOff, uOff_x, u, NULL, u_x, aOff, aOff_x, a, NULL, a_x, 0.0, fegeom.v, numConstants, constants, &integrand);
2504bee2e38SMatthew G. Knepley       integrand *= w;
25120cf1dd8SToby Isaac       integral[e*Nf+field] += integrand;
25220cf1dd8SToby Isaac       if (debug > 1) {ierr = PetscPrintf(PETSC_COMM_SELF, "    int: %g %g\n", (double) PetscRealPart(integrand), (double) PetscRealPart(integral[field]));CHKERRQ(ierr);}
25320cf1dd8SToby Isaac     }
25420cf1dd8SToby Isaac     cOffset    += totDim;
25520cf1dd8SToby Isaac     cOffsetAux += totDimAux;
25620cf1dd8SToby Isaac   }
25720cf1dd8SToby Isaac   PetscFunctionReturn(0);
25820cf1dd8SToby Isaac }
25920cf1dd8SToby Isaac 
2602b99622eSMatthew G. Knepley static PetscErrorCode PetscFEIntegrateBd_Basic(PetscDS ds, PetscInt field,
261afe6d6adSToby Isaac                                                PetscBdPointFunc obj_func,
2624bee2e38SMatthew G. Knepley                                                PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscScalar integral[])
263afe6d6adSToby Isaac {
264afe6d6adSToby Isaac   const PetscInt     debug = 0;
2654bee2e38SMatthew G. Knepley   PetscFE            fe;
266afe6d6adSToby Isaac   PetscQuadrature    quad;
267ef0bb6c7SMatthew G. Knepley   PetscTabulation   *Tf, *TfAux = NULL;
2684bee2e38SMatthew G. Knepley   PetscScalar       *u, *u_x, *a, *a_x, *basisReal, *basisDerReal;
269afe6d6adSToby Isaac   const PetscScalar *constants;
270afe6d6adSToby Isaac   PetscReal         *x;
271ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
272afe6d6adSToby Isaac   PetscBool          isAffine, auxOnBd;
273afe6d6adSToby Isaac   const PetscReal   *quadPoints, *quadWeights;
274afe6d6adSToby Isaac   PetscInt           qNc, Nq, q, Np, dE;
275afe6d6adSToby Isaac   PetscInt           dim, dimAux, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, e;
276afe6d6adSToby Isaac   PetscErrorCode     ierr;
277afe6d6adSToby Isaac 
278afe6d6adSToby Isaac   PetscFunctionBegin;
279afe6d6adSToby Isaac   if (!obj_func) PetscFunctionReturn(0);
2804bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
2814bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
2824bee2e38SMatthew G. Knepley   ierr = PetscFEGetFaceQuadrature(fe, &quad);CHKERRQ(ierr);
2834bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
2844bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
2854bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
2864bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
2874bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, NULL, &u_x);CHKERRQ(ierr);
2884bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
289ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetFaceTabulation(ds, &Tf);CHKERRQ(ierr);
2904bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
2914bee2e38SMatthew G. Knepley   if (dsAux) {
2924bee2e38SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
2934bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
2944bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
2954bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
2964bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
2974bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
298afe6d6adSToby Isaac     auxOnBd = dimAux < dim ? PETSC_TRUE : PETSC_FALSE;
299ef0bb6c7SMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
300ef0bb6c7SMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
30101907d53SMatthew G. Knepley     if (Tf[0]->Np != TfAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", Tf[0]->Np, TfAux[0]->Np);
302afe6d6adSToby Isaac   }
303afe6d6adSToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
304afe6d6adSToby Isaac   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
305afe6d6adSToby Isaac   Np = fgeom->numPoints;
306afe6d6adSToby Isaac   dE = fgeom->dimEmbed;
307afe6d6adSToby Isaac   isAffine = fgeom->isAffine;
308afe6d6adSToby Isaac   for (e = 0; e < Ne; ++e) {
3099f209ee4SMatthew G. Knepley     PetscFEGeom    fegeom, cgeom;
310afe6d6adSToby Isaac     const PetscInt face = fgeom->face[e][0]; /* Local face number in cell */
311ea78f98cSLisandro Dalcin     fegeom.n = NULL;
312ea78f98cSLisandro Dalcin     fegeom.v = NULL;
313ea78f98cSLisandro Dalcin     fegeom.J = NULL;
314ea78f98cSLisandro Dalcin     fegeom.detJ = NULL;
31527f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
31627f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
31727f02ce8SMatthew G. Knepley     cgeom.dim       = fgeom->dim;
31827f02ce8SMatthew G. Knepley     cgeom.dimEmbed  = fgeom->dimEmbed;
3194bee2e38SMatthew G. Knepley     if (isAffine) {
3204bee2e38SMatthew G. Knepley       fegeom.v    = x;
3214bee2e38SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
3227132c3f7SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*Np*dE*dE];
3237132c3f7SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*Np*dE*dE];
3247132c3f7SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e*Np];
3257132c3f7SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*Np*dE];
3269f209ee4SMatthew G. Knepley 
3277132c3f7SMatthew G. Knepley       cgeom.J     = &fgeom->suppJ[0][e*Np*dE*dE];
3287132c3f7SMatthew G. Knepley       cgeom.invJ  = &fgeom->suppInvJ[0][e*Np*dE*dE];
3297132c3f7SMatthew G. Knepley       cgeom.detJ  = &fgeom->suppDetJ[0][e*Np];
3304bee2e38SMatthew G. Knepley     }
331afe6d6adSToby Isaac     for (q = 0; q < Nq; ++q) {
332afe6d6adSToby Isaac       PetscScalar integrand;
3334bee2e38SMatthew G. Knepley       PetscReal   w;
334afe6d6adSToby Isaac 
335afe6d6adSToby Isaac       if (isAffine) {
3367132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim-1, fegeom.xi, &fgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*(dim-1)], x);
337afe6d6adSToby Isaac       } else {
3383fe841f2SMatthew G. Knepley         fegeom.v    = &fgeom->v[(e*Np+q)*dE];
3399f209ee4SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
3409f209ee4SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
3414bee2e38SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
3424bee2e38SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
3439f209ee4SMatthew G. Knepley 
3449f209ee4SMatthew G. Knepley         cgeom.J     = &fgeom->suppJ[0][(e*Np+q)*dE*dE];
3459f209ee4SMatthew G. Knepley         cgeom.invJ  = &fgeom->suppInvJ[0][(e*Np+q)*dE*dE];
3469f209ee4SMatthew G. Knepley         cgeom.detJ  = &fgeom->suppDetJ[0][e*Np+q];
347afe6d6adSToby Isaac       }
3484bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
349afe6d6adSToby Isaac       if (debug > 1 && q < Np) {
3504bee2e38SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
351afe6d6adSToby Isaac #ifndef PETSC_USE_COMPLEX
3524bee2e38SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
353afe6d6adSToby Isaac #endif
354afe6d6adSToby Isaac       }
355afe6d6adSToby Isaac       if (debug > 1) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
356ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, face, q, Tf, &cgeom, &coefficients[cOffset], NULL, u, u_x, NULL);CHKERRQ(ierr);
357ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, face, q, TfAux, &cgeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
3584bee2e38SMatthew G. Knepley       obj_func(dim, Nf, NfAux, uOff, uOff_x, u, NULL, u_x, aOff, aOff_x, a, NULL, a_x, 0.0, fegeom.v, fegeom.n, numConstants, constants, &integrand);
3594bee2e38SMatthew G. Knepley       integrand *= w;
360afe6d6adSToby Isaac       integral[e*Nf+field] += integrand;
361afe6d6adSToby Isaac       if (debug > 1) {ierr = PetscPrintf(PETSC_COMM_SELF, "    int: %g %g\n", (double) PetscRealPart(integrand), (double) PetscRealPart(integral[e*Nf+field]));CHKERRQ(ierr);}
362afe6d6adSToby Isaac     }
363afe6d6adSToby Isaac     cOffset    += totDim;
364afe6d6adSToby Isaac     cOffsetAux += totDimAux;
365afe6d6adSToby Isaac   }
366afe6d6adSToby Isaac   PetscFunctionReturn(0);
367afe6d6adSToby Isaac }
368afe6d6adSToby Isaac 
3696528b96dSMatthew G. Knepley PetscErrorCode PetscFEIntegrateResidual_Basic(PetscDS ds, PetscHashFormKey key, PetscInt Ne, PetscFEGeom *cgeom,
3704bee2e38SMatthew G. Knepley                                               const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[])
37120cf1dd8SToby Isaac {
37220cf1dd8SToby Isaac   const PetscInt     debug = 0;
3736528b96dSMatthew G. Knepley   const PetscInt     field = key.field;
3744bee2e38SMatthew G. Knepley   PetscFE            fe;
3756528b96dSMatthew G. Knepley   PetscWeakForm      wf;
3766528b96dSMatthew G. Knepley   PetscInt           n0,       n1, i;
3776528b96dSMatthew G. Knepley   PetscPointFunc    *f0_func, *f1_func;
37820cf1dd8SToby Isaac   PetscQuadrature    quad;
379ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
3804bee2e38SMatthew G. Knepley   PetscScalar       *f0, *f1, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal;
38120cf1dd8SToby Isaac   const PetscScalar *constants;
38220cf1dd8SToby Isaac   PetscReal         *x;
383ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
384ef0bb6c7SMatthew G. Knepley   PetscInt           dim, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, fOffset, e;
38520cf1dd8SToby Isaac   PetscBool          isAffine;
38620cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
3874bee2e38SMatthew G. Knepley   PetscInt           qNc, Nq, q, Np, dE;
38820cf1dd8SToby Isaac   PetscErrorCode     ierr;
38920cf1dd8SToby Isaac 
39020cf1dd8SToby Isaac   PetscFunctionBegin;
3914bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
3924bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
3934bee2e38SMatthew G. Knepley   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
3944bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
3954bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
3964bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
3974bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
3984bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, field, &fOffset);CHKERRQ(ierr);
3996528b96dSMatthew G. Knepley   ierr = PetscDSGetWeakForm(ds, &wf);CHKERRQ(ierr);
4006528b96dSMatthew G. Knepley   ierr = PetscWeakFormGetResidual(wf, key.label, key.value, key.field, &n0, &f0_func, &n1, &f1_func);CHKERRQ(ierr);
4016528b96dSMatthew G. Knepley   if (!n0 && !n1) PetscFunctionReturn(0);
4024bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
4034bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
4044bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, &f0, &f1, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
405ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
4064bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
4074bee2e38SMatthew G. Knepley   if (dsAux) {
4084bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
4094bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
4104bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
4114bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
4124bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
413ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);
41401907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
41520cf1dd8SToby Isaac   }
41620cf1dd8SToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
4174bee2e38SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
41820cf1dd8SToby Isaac   Np = cgeom->numPoints;
41920cf1dd8SToby Isaac   dE = cgeom->dimEmbed;
42020cf1dd8SToby Isaac   isAffine = cgeom->isAffine;
42120cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
4224bee2e38SMatthew G. Knepley     PetscFEGeom fegeom;
42320cf1dd8SToby Isaac 
42427f02ce8SMatthew G. Knepley     fegeom.dim      = cgeom->dim;
42527f02ce8SMatthew G. Knepley     fegeom.dimEmbed = cgeom->dimEmbed;
4264bee2e38SMatthew G. Knepley     if (isAffine) {
4274bee2e38SMatthew G. Knepley       fegeom.v    = x;
4284bee2e38SMatthew G. Knepley       fegeom.xi   = cgeom->xi;
4297132c3f7SMatthew G. Knepley       fegeom.J    = &cgeom->J[e*Np*dE*dE];
4307132c3f7SMatthew G. Knepley       fegeom.invJ = &cgeom->invJ[e*Np*dE*dE];
4317132c3f7SMatthew G. Knepley       fegeom.detJ = &cgeom->detJ[e*Np];
4324bee2e38SMatthew G. Knepley     }
433ef0bb6c7SMatthew G. Knepley     ierr = PetscArrayzero(f0, Nq*T[field]->Nc);CHKERRQ(ierr);
43427f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f1, Nq*T[field]->Nc*dE);CHKERRQ(ierr);
43520cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
4364bee2e38SMatthew G. Knepley       PetscReal w;
4374bee2e38SMatthew G. Knepley       PetscInt  c, d;
43820cf1dd8SToby Isaac 
43920cf1dd8SToby Isaac       if (isAffine) {
4407132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &cgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*dim], x);
44120cf1dd8SToby Isaac       } else {
4424bee2e38SMatthew G. Knepley         fegeom.v    = &cgeom->v[(e*Np+q)*dE];
4434bee2e38SMatthew G. Knepley         fegeom.J    = &cgeom->J[(e*Np+q)*dE*dE];
4444bee2e38SMatthew G. Knepley         fegeom.invJ = &cgeom->invJ[(e*Np+q)*dE*dE];
4454bee2e38SMatthew G. Knepley         fegeom.detJ = &cgeom->detJ[e*Np+q];
44620cf1dd8SToby Isaac       }
4474bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
44820cf1dd8SToby Isaac       if (debug > 1 && q < Np) {
4494bee2e38SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
4507be5e748SToby Isaac #if !defined(PETSC_USE_COMPLEX)
4514bee2e38SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
45220cf1dd8SToby Isaac #endif
45320cf1dd8SToby Isaac       }
45420cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
455ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);
456ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, 0, q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
4576528b96dSMatthew G. Knepley       for (i = 0; i < n0; ++i) f0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, numConstants, constants, &f0[q*T[field]->Nc]);
458ef0bb6c7SMatthew G. Knepley       for (c = 0; c < T[field]->Nc; ++c) f0[q*T[field]->Nc+c] *= w;
4596528b96dSMatthew G. Knepley       for (i = 0; i < n1; ++i) f1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, numConstants, constants, &f1[q*T[field]->Nc*dim]);
460ef0bb6c7SMatthew G. Knepley       for (c = 0; c < T[field]->Nc; ++c) for (d = 0; d < dim; ++d) f1[(q*T[field]->Nc+c)*dim+d] *= w;
46120cf1dd8SToby Isaac     }
462ef0bb6c7SMatthew G. Knepley     ierr = PetscFEUpdateElementVec_Internal(fe, T[field], 0, basisReal, basisDerReal, &fegeom, f0, f1, &elemVec[cOffset+fOffset]);CHKERRQ(ierr);
46320cf1dd8SToby Isaac     cOffset    += totDim;
46420cf1dd8SToby Isaac     cOffsetAux += totDimAux;
46520cf1dd8SToby Isaac   }
46620cf1dd8SToby Isaac   PetscFunctionReturn(0);
46720cf1dd8SToby Isaac }
46820cf1dd8SToby Isaac 
469*45480ffeSMatthew G. Knepley PetscErrorCode PetscFEIntegrateBdResidual_Basic(PetscDS ds, PetscWeakForm wf, PetscHashFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
4704bee2e38SMatthew G. Knepley                                                 const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[])
47120cf1dd8SToby Isaac {
47220cf1dd8SToby Isaac   const PetscInt     debug = 0;
47306d8a0d3SMatthew G. Knepley   const PetscInt     field = key.field;
4744bee2e38SMatthew G. Knepley   PetscFE            fe;
47506d8a0d3SMatthew G. Knepley   PetscInt           n0,       n1, i;
47606d8a0d3SMatthew G. Knepley   PetscBdPointFunc  *f0_func, *f1_func;
47720cf1dd8SToby Isaac   PetscQuadrature    quad;
478ef0bb6c7SMatthew G. Knepley   PetscTabulation   *Tf, *TfAux = NULL;
4794bee2e38SMatthew G. Knepley   PetscScalar       *f0, *f1, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal;
48020cf1dd8SToby Isaac   const PetscScalar *constants;
48120cf1dd8SToby Isaac   PetscReal         *x;
482ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
483ef0bb6c7SMatthew G. Knepley   PetscInt           dim, dimAux, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, fOffset, e, NcI;
484b07bd890SMatthew G. Knepley   PetscBool          isAffine, auxOnBd = PETSC_FALSE;
48520cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
48620cf1dd8SToby Isaac   PetscInt           qNc, Nq, q, Np, dE;
48720cf1dd8SToby Isaac   PetscErrorCode     ierr;
48820cf1dd8SToby Isaac 
48920cf1dd8SToby Isaac   PetscFunctionBegin;
4904bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
4914bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
4924bee2e38SMatthew G. Knepley   ierr = PetscFEGetFaceQuadrature(fe, &quad);CHKERRQ(ierr);
4934bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
4944bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
4954bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
4964bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
4974bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, field, &fOffset);CHKERRQ(ierr);
49806d8a0d3SMatthew G. Knepley   ierr = PetscWeakFormGetBdResidual(wf, key.label, key.value, key.field, &n0, &f0_func, &n1, &f1_func);CHKERRQ(ierr);
49906d8a0d3SMatthew G. Knepley   if (!n0 && !n1) PetscFunctionReturn(0);
5004bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
5014bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
5024bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, &f0, &f1, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
503ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetFaceTabulation(ds, &Tf);CHKERRQ(ierr);
5044bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
5054bee2e38SMatthew G. Knepley   if (dsAux) {
5064bee2e38SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
5074bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
5084bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
5094bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
5104bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
5114bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
5127be5e748SToby Isaac     auxOnBd = dimAux < dim ? PETSC_TRUE : PETSC_FALSE;
513ef0bb6c7SMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
514ef0bb6c7SMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
51501907d53SMatthew G. Knepley     if (Tf[0]->Np != TfAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", Tf[0]->Np, TfAux[0]->Np);
51620cf1dd8SToby Isaac   }
517ef0bb6c7SMatthew G. Knepley   NcI = Tf[field]->Nc;
51820cf1dd8SToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
519afe6d6adSToby Isaac   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
52020cf1dd8SToby Isaac   Np = fgeom->numPoints;
52120cf1dd8SToby Isaac   dE = fgeom->dimEmbed;
52220cf1dd8SToby Isaac   isAffine = fgeom->isAffine;
52320cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
5249f209ee4SMatthew G. Knepley     PetscFEGeom    fegeom, cgeom;
52520cf1dd8SToby Isaac     const PetscInt face = fgeom->face[e][0];
526ea78f98cSLisandro Dalcin     fegeom.n = NULL;
527ea78f98cSLisandro Dalcin     fegeom.v = NULL;
528ea78f98cSLisandro Dalcin     fegeom.J = NULL;
529ea78f98cSLisandro Dalcin     fegeom.detJ = NULL;
53027f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
53127f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
53227f02ce8SMatthew G. Knepley     cgeom.dim       = fgeom->dim;
53327f02ce8SMatthew G. Knepley     cgeom.dimEmbed  = fgeom->dimEmbed;
5344bee2e38SMatthew G. Knepley     if (isAffine) {
5354bee2e38SMatthew G. Knepley       fegeom.v    = x;
5364bee2e38SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
5377132c3f7SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*Np*dE*dE];
5387132c3f7SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*Np*dE*dE];
5397132c3f7SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e*Np];
5407132c3f7SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*Np*dE];
5419f209ee4SMatthew G. Knepley 
5427132c3f7SMatthew G. Knepley       cgeom.J     = &fgeom->suppJ[0][e*Np*dE*dE];
5437132c3f7SMatthew G. Knepley       cgeom.invJ  = &fgeom->suppInvJ[0][e*Np*dE*dE];
5447132c3f7SMatthew G. Knepley       cgeom.detJ  = &fgeom->suppDetJ[0][e*Np];
5454bee2e38SMatthew G. Knepley     }
546580bdb30SBarry Smith     ierr = PetscArrayzero(f0, Nq*NcI);CHKERRQ(ierr);
54727f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f1, Nq*NcI*dE);CHKERRQ(ierr);
54820cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
5494bee2e38SMatthew G. Knepley       PetscReal w;
5504bee2e38SMatthew G. Knepley       PetscInt  c, d;
5514bee2e38SMatthew G. Knepley 
55220cf1dd8SToby Isaac       if (isAffine) {
5537132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim-1, fegeom.xi, &fgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*(dim-1)], x);
55420cf1dd8SToby Isaac       } else {
5553fe841f2SMatthew G. Knepley         fegeom.v    = &fgeom->v[(e*Np+q)*dE];
5569f209ee4SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
5579f209ee4SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
5584bee2e38SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
5594bee2e38SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
5609f209ee4SMatthew G. Knepley 
5619f209ee4SMatthew G. Knepley         cgeom.J     = &fgeom->suppJ[0][(e*Np+q)*dE*dE];
5629f209ee4SMatthew G. Knepley         cgeom.invJ  = &fgeom->suppInvJ[0][(e*Np+q)*dE*dE];
5639f209ee4SMatthew G. Knepley         cgeom.detJ  = &fgeom->suppDetJ[0][e*Np+q];
56420cf1dd8SToby Isaac       }
5654bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
56620cf1dd8SToby Isaac       if (debug > 1 && q < Np) {
5674bee2e38SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
5687be5e748SToby Isaac #if !defined(PETSC_USE_COMPLEX)
5694bee2e38SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
57020cf1dd8SToby Isaac #endif
57120cf1dd8SToby Isaac       }
57220cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
573ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, face, q, Tf, &cgeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);
574ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, auxOnBd ? 0 : face, q, TfAux, &cgeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
57506d8a0d3SMatthew G. Knepley       for (i = 0; i < n0; ++i) f0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f0[q*NcI]);
5764bee2e38SMatthew G. Knepley       for (c = 0; c < NcI; ++c) f0[q*NcI+c] *= w;
57706d8a0d3SMatthew G. Knepley       for (i = 0; i < n1; ++i) f1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f1[q*NcI*dim]);
5784bee2e38SMatthew G. Knepley       for (c = 0; c < NcI; ++c) for (d = 0; d < dim; ++d) f1[(q*NcI+c)*dim+d] *= w;
57920cf1dd8SToby Isaac     }
580ef0bb6c7SMatthew G. Knepley     ierr = PetscFEUpdateElementVec_Internal(fe, Tf[field], face, basisReal, basisDerReal, &cgeom, f0, f1, &elemVec[cOffset+fOffset]);CHKERRQ(ierr);
58120cf1dd8SToby Isaac     cOffset    += totDim;
58220cf1dd8SToby Isaac     cOffsetAux += totDimAux;
58320cf1dd8SToby Isaac   }
58420cf1dd8SToby Isaac   PetscFunctionReturn(0);
58520cf1dd8SToby Isaac }
58620cf1dd8SToby Isaac 
58727f02ce8SMatthew G. Knepley /*
58827f02ce8SMatthew G. Knepley   BdIntegral: Operates completely in the embedding dimension. The trick is to have special "face quadrature" so we only integrate over the face, but
58927f02ce8SMatthew G. Knepley               all transforms operate in the full space and are square.
59027f02ce8SMatthew G. Knepley 
59127f02ce8SMatthew G. Knepley   HybridIntegral: The discretization is lower dimensional. That means the transforms are non-square.
59227f02ce8SMatthew G. Knepley     1) DMPlexGetCellFields() retrieves from the hybrid cell, so it gets fields from both faces
59327f02ce8SMatthew G. Knepley     2) We need to assume that the orientation is 0 for both
59427f02ce8SMatthew G. Knepley     3) TODO We need to use a non-square Jacobian for the derivative maps, meaning the embedding dimension has to go to EvaluateFieldJets() and UpdateElementVec()
59527f02ce8SMatthew G. Knepley */
5966528b96dSMatthew G. Knepley static PetscErrorCode PetscFEIntegrateHybridResidual_Basic(PetscDS ds, PetscHashFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
59727f02ce8SMatthew G. Knepley                                                            const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[])
59827f02ce8SMatthew G. Knepley {
59927f02ce8SMatthew G. Knepley   const PetscInt     debug = 0;
6006528b96dSMatthew G. Knepley   const PetscInt     field = key.field;
60127f02ce8SMatthew G. Knepley   PetscFE            fe;
6026528b96dSMatthew G. Knepley   PetscWeakForm      wf;
6036528b96dSMatthew G. Knepley   PetscInt           n0,      n1, i;
6046528b96dSMatthew G. Knepley   PetscBdPointFunc  *f0_func, *f1_func;
60527f02ce8SMatthew G. Knepley   PetscQuadrature    quad;
606665f567fSMatthew G. Knepley   PetscTabulation   *Tf, *TfAux = NULL;
60727f02ce8SMatthew G. Knepley   PetscScalar       *f0, *f1, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal;
60827f02ce8SMatthew G. Knepley   const PetscScalar *constants;
60927f02ce8SMatthew G. Knepley   PetscReal         *x;
610665f567fSMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
611665f567fSMatthew G. Knepley   PetscInt           dim, dimAux, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, fOffset, e, NcI, NcS;
612665f567fSMatthew G. Knepley   PetscBool          isCohesiveField, isAffine, auxOnBd = PETSC_FALSE;
61327f02ce8SMatthew G. Knepley   const PetscReal   *quadPoints, *quadWeights;
61427f02ce8SMatthew G. Knepley   PetscInt           qNc, Nq, q, Np, dE;
61527f02ce8SMatthew G. Knepley   PetscErrorCode     ierr;
61627f02ce8SMatthew G. Knepley 
61727f02ce8SMatthew G. Knepley   PetscFunctionBegin;
61827f02ce8SMatthew G. Knepley   /* Hybrid discretization is posed directly on faces */
61927f02ce8SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
62027f02ce8SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
62127f02ce8SMatthew G. Knepley   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
62227f02ce8SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
62327f02ce8SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
62427f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
62527f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
62627f02ce8SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, field, &fOffset);CHKERRQ(ierr);
6276528b96dSMatthew G. Knepley   ierr = PetscDSGetWeakForm(ds, &wf);CHKERRQ(ierr);
6286528b96dSMatthew G. Knepley   ierr = PetscWeakFormGetBdResidual(wf, key.label, key.value, key.field, &n0, &f0_func, &n1, &f1_func);CHKERRQ(ierr);
6296528b96dSMatthew G. Knepley   if (!n0 && !n1) PetscFunctionReturn(0);
63027f02ce8SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
63127f02ce8SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
63227f02ce8SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, &f0, &f1, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
63327f02ce8SMatthew G. Knepley   /* NOTE This is a bulk tabulation because the DS is a face discretization */
634665f567fSMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &Tf);CHKERRQ(ierr);
63527f02ce8SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
63627f02ce8SMatthew G. Knepley   if (dsAux) {
63727f02ce8SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
63827f02ce8SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
63927f02ce8SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
64027f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
64127f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
64227f02ce8SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
64301907d53SMatthew G. Knepley     auxOnBd = dimAux == dim ? PETSC_TRUE : PETSC_FALSE;
644665f567fSMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
645665f567fSMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
64601907d53SMatthew G. Knepley     if (Tf[0]->Np != TfAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", Tf[0]->Np, TfAux[0]->Np);
64727f02ce8SMatthew G. Knepley   }
64827f02ce8SMatthew G. Knepley   isCohesiveField = field == Nf-1 ? PETSC_TRUE : PETSC_FALSE;
649665f567fSMatthew G. Knepley   NcI = Tf[field]->Nc;
65027f02ce8SMatthew G. Knepley   NcS = isCohesiveField ? NcI : 2*NcI;
65127f02ce8SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
65227f02ce8SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
65327f02ce8SMatthew G. Knepley   Np = fgeom->numPoints;
65427f02ce8SMatthew G. Knepley   dE = fgeom->dimEmbed;
65527f02ce8SMatthew G. Knepley   isAffine = fgeom->isAffine;
65627f02ce8SMatthew G. Knepley   for (e = 0; e < Ne; ++e) {
65727f02ce8SMatthew G. Knepley     PetscFEGeom    fegeom;
65827f02ce8SMatthew G. Knepley     const PetscInt face = fgeom->face[e][0];
65927f02ce8SMatthew G. Knepley 
66027f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
66127f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
66227f02ce8SMatthew G. Knepley     if (isAffine) {
66327f02ce8SMatthew G. Knepley       fegeom.v    = x;
66427f02ce8SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
66527f02ce8SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*dE*dE];
66627f02ce8SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*dE*dE];
66727f02ce8SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e];
66827f02ce8SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*dE];
66927f02ce8SMatthew G. Knepley     }
67027f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f0, Nq*NcS);CHKERRQ(ierr);
67127f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f1, Nq*NcS*dE);CHKERRQ(ierr);
67227f02ce8SMatthew G. Knepley     for (q = 0; q < Nq; ++q) {
67327f02ce8SMatthew G. Knepley       PetscReal w;
67427f02ce8SMatthew G. Knepley       PetscInt  c, d;
67527f02ce8SMatthew G. Knepley 
67627f02ce8SMatthew G. Knepley       if (isAffine) {
67727f02ce8SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &fgeom->v[e*dE], fegeom.J, &quadPoints[q*dim], x);
67827f02ce8SMatthew G. Knepley       } else {
67927f02ce8SMatthew G. Knepley         fegeom.v    = &fgeom->v[(e*Np+q)*dE];
68027f02ce8SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
68127f02ce8SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
68227f02ce8SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
68327f02ce8SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
68427f02ce8SMatthew G. Knepley       }
68527f02ce8SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
68627f02ce8SMatthew G. Knepley       if (debug > 1 && q < Np) {
68727f02ce8SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
68827f02ce8SMatthew G. Knepley #if !defined(PETSC_USE_COMPLEX)
68927f02ce8SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dE, fegeom.invJ);CHKERRQ(ierr);
69027f02ce8SMatthew G. Knepley #endif
69127f02ce8SMatthew G. Knepley       }
69227f02ce8SMatthew G. Knepley       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
69327f02ce8SMatthew G. Knepley       /* TODO Is this cell or face quadrature, meaning should we use 'q' or 'face*Nq+q' */
694665f567fSMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(ds, Nf, 0, q, Tf, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);
695665f567fSMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(dsAux, NfAux, 0, auxOnBd ? q : face*Nq+q, TfAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
6966528b96dSMatthew G. Knepley       for (i = 0; i < n0; ++i) f0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f0[q*NcS]);
69727f02ce8SMatthew G. Knepley       for (c = 0; c < NcS; ++c) f0[q*NcS+c] *= w;
6986528b96dSMatthew G. Knepley       for (i = 0; i < n1; ++i) f1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f1[q*NcS*dim]);
69927f02ce8SMatthew G. Knepley       for (c = 0; c < NcS; ++c) for (d = 0; d < dim; ++d) f1[(q*NcS+c)*dim+d] *= w;
70027f02ce8SMatthew G. Knepley     }
701665f567fSMatthew G. Knepley     if (isCohesiveField) {PetscFEUpdateElementVec_Internal(fe, Tf[field], 0, basisReal, basisDerReal, &fegeom, f0, f1, &elemVec[cOffset+fOffset*2]);}
702665f567fSMatthew G. Knepley     else                 {PetscFEUpdateElementVec_Hybrid_Internal(fe, Tf[field], 0, basisReal, basisDerReal, &fegeom, f0, f1, &elemVec[cOffset+fOffset*2]);}
70327f02ce8SMatthew G. Knepley     cOffset    += totDim;
70427f02ce8SMatthew G. Knepley     cOffsetAux += totDimAux;
70527f02ce8SMatthew G. Knepley   }
70627f02ce8SMatthew G. Knepley   PetscFunctionReturn(0);
70727f02ce8SMatthew G. Knepley }
70827f02ce8SMatthew G. Knepley 
7096528b96dSMatthew G. Knepley PetscErrorCode PetscFEIntegrateJacobian_Basic(PetscDS ds, PetscFEJacobianType jtype, PetscHashFormKey key, PetscInt Ne, PetscFEGeom *cgeom,
7104bee2e38SMatthew G. Knepley                                               const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[])
71120cf1dd8SToby Isaac {
71220cf1dd8SToby Isaac   const PetscInt     debug      = 0;
7134bee2e38SMatthew G. Knepley   PetscFE            feI, feJ;
7146528b96dSMatthew G. Knepley   PetscWeakForm      wf;
7156528b96dSMatthew G. Knepley   PetscPointJac     *g0_func, *g1_func, *g2_func, *g3_func;
7166528b96dSMatthew G. Knepley   PetscInt           n0, n1, n2, n3, i;
71720cf1dd8SToby Isaac   PetscInt           cOffset    = 0; /* Offset into coefficients[] for element e */
71820cf1dd8SToby Isaac   PetscInt           cOffsetAux = 0; /* Offset into coefficientsAux[] for element e */
71920cf1dd8SToby Isaac   PetscInt           eOffset    = 0; /* Offset into elemMat[] for element e */
72020cf1dd8SToby Isaac   PetscInt           offsetI    = 0; /* Offset into an element vector for fieldI */
72120cf1dd8SToby Isaac   PetscInt           offsetJ    = 0; /* Offset into an element vector for fieldJ */
72220cf1dd8SToby Isaac   PetscQuadrature    quad;
723ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
7244bee2e38SMatthew G. Knepley   PetscScalar       *g0, *g1, *g2, *g3, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal, *testReal, *testDerReal;
72520cf1dd8SToby Isaac   const PetscScalar *constants;
72620cf1dd8SToby Isaac   PetscReal         *x;
727ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
728ef0bb6c7SMatthew G. Knepley   PetscInt           NcI = 0, NcJ = 0;
7296528b96dSMatthew G. Knepley   PetscInt           dim, numConstants, Nf, fieldI, fieldJ, NfAux = 0, totDim, totDimAux = 0, e;
73020cf1dd8SToby Isaac   PetscInt           dE, Np;
73120cf1dd8SToby Isaac   PetscBool          isAffine;
73220cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
73320cf1dd8SToby Isaac   PetscInt           qNc, Nq, q;
73420cf1dd8SToby Isaac   PetscErrorCode     ierr;
73520cf1dd8SToby Isaac 
73620cf1dd8SToby Isaac   PetscFunctionBegin;
7376528b96dSMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
7386528b96dSMatthew G. Knepley   fieldI = key.field / Nf;
7396528b96dSMatthew G. Knepley   fieldJ = key.field % Nf;
7404bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldI, (PetscObject *) &feI);CHKERRQ(ierr);
7414bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldJ, (PetscObject *) &feJ);CHKERRQ(ierr);
7424bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(feI, &dim);CHKERRQ(ierr);
7434bee2e38SMatthew G. Knepley   ierr = PetscFEGetQuadrature(feI, &quad);CHKERRQ(ierr);
7444bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
7454bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
7464bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
7476528b96dSMatthew G. Knepley   ierr = PetscDSGetWeakForm(ds, &wf);CHKERRQ(ierr);
74820cf1dd8SToby Isaac   switch(jtype) {
7496528b96dSMatthew G. Knepley   case PETSCFE_JACOBIAN_DYN: ierr = PetscWeakFormGetDynamicJacobian(wf, key.label, key.value, fieldI, fieldJ, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
7506528b96dSMatthew G. Knepley   case PETSCFE_JACOBIAN_PRE: ierr = PetscWeakFormGetJacobianPreconditioner(wf, key.label, key.value, fieldI, fieldJ, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
7516528b96dSMatthew G. Knepley   case PETSCFE_JACOBIAN:     ierr = PetscWeakFormGetJacobian(wf, key.label, key.value, fieldI, fieldJ, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
75220cf1dd8SToby Isaac   }
7536528b96dSMatthew G. Knepley   if (!n0 && !n1 && !n2 && !n3) PetscFunctionReturn(0);
7544bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
7554bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, &testReal, &testDerReal);CHKERRQ(ierr);
7564bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, NULL, NULL, &g0, &g1, &g2, &g3);CHKERRQ(ierr);
757ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
7584bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldI, &offsetI);CHKERRQ(ierr);
7594bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldJ, &offsetJ);CHKERRQ(ierr);
7604bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
7614bee2e38SMatthew G. Knepley   if (dsAux) {
7624bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
7634bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
7644bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
7654bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
7664bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
767ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);
76801907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
76920cf1dd8SToby Isaac   }
77027f02ce8SMatthew G. Knepley   NcI = T[fieldI]->Nc;
77127f02ce8SMatthew G. Knepley   NcJ = T[fieldJ]->Nc;
7724bee2e38SMatthew G. Knepley   Np  = cgeom->numPoints;
7734bee2e38SMatthew G. Knepley   dE  = cgeom->dimEmbed;
7744bee2e38SMatthew G. Knepley   isAffine = cgeom->isAffine;
77527f02ce8SMatthew G. Knepley   /* Initialize here in case the function is not defined */
77627f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
77727f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
77827f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
77927f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
78027f02ce8SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
78127f02ce8SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
7824bee2e38SMatthew G. Knepley   for (e = 0; e < Ne; ++e) {
7834bee2e38SMatthew G. Knepley     PetscFEGeom fegeom;
7844bee2e38SMatthew G. Knepley 
78527f02ce8SMatthew G. Knepley     fegeom.dim      = cgeom->dim;
78627f02ce8SMatthew G. Knepley     fegeom.dimEmbed = cgeom->dimEmbed;
7874bee2e38SMatthew G. Knepley     if (isAffine) {
7884bee2e38SMatthew G. Knepley       fegeom.v    = x;
7894bee2e38SMatthew G. Knepley       fegeom.xi   = cgeom->xi;
7907132c3f7SMatthew G. Knepley       fegeom.J    = &cgeom->J[e*Np*dE*dE];
7917132c3f7SMatthew G. Knepley       fegeom.invJ = &cgeom->invJ[e*Np*dE*dE];
7927132c3f7SMatthew G. Knepley       fegeom.detJ = &cgeom->detJ[e*Np];
7934bee2e38SMatthew G. Knepley     }
79420cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
79520cf1dd8SToby Isaac       PetscReal w;
7964bee2e38SMatthew G. Knepley       PetscInt  c;
79720cf1dd8SToby Isaac 
79820cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
79920cf1dd8SToby Isaac       if (isAffine) {
8007132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &cgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*dim], x);
80120cf1dd8SToby Isaac       } else {
8024bee2e38SMatthew G. Knepley         fegeom.v    = &cgeom->v[(e*Np+q)*dE];
8034bee2e38SMatthew G. Knepley         fegeom.J    = &cgeom->J[(e*Np+q)*dE*dE];
8044bee2e38SMatthew G. Knepley         fegeom.invJ = &cgeom->invJ[(e*Np+q)*dE*dE];
8054bee2e38SMatthew G. Knepley         fegeom.detJ = &cgeom->detJ[e*Np+q];
80620cf1dd8SToby Isaac       }
8074bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
808ef0bb6c7SMatthew G. Knepley       if (coefficients) {ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);}
809ef0bb6c7SMatthew G. Knepley       if (dsAux)        {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, 0, q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
81020cf1dd8SToby Isaac       if (g0_func) {
811580bdb30SBarry Smith         ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
8126528b96dSMatthew G. Knepley         for (i = 0; i < n0; ++i) g0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g0);
81320cf1dd8SToby Isaac         for (c = 0; c < NcI*NcJ; ++c) g0[c] *= w;
81420cf1dd8SToby Isaac       }
81520cf1dd8SToby Isaac       if (g1_func) {
81627f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
8176528b96dSMatthew G. Knepley         for (i = 0; i < n1; ++i) g1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g1);
8184bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g1[c] *= w;
81920cf1dd8SToby Isaac       }
82020cf1dd8SToby Isaac       if (g2_func) {
82127f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
8226528b96dSMatthew G. Knepley         for (i = 0; i < n2; ++i) g2_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g2);
8234bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g2[c] *= w;
82420cf1dd8SToby Isaac       }
82520cf1dd8SToby Isaac       if (g3_func) {
82627f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
8276528b96dSMatthew G. Knepley         for (i = 0; i < n3; ++i) g3_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g3);
8284bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim*dim; ++c) g3[c] *= w;
82920cf1dd8SToby Isaac       }
83020cf1dd8SToby Isaac 
831ef0bb6c7SMatthew G. Knepley       ierr = PetscFEUpdateElementMat_Internal(feI, feJ, 0, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &fegeom, g0, g1, g2, g3, eOffset, totDim, offsetI, offsetJ, elemMat);CHKERRQ(ierr);
83220cf1dd8SToby Isaac     }
83320cf1dd8SToby Isaac     if (debug > 1) {
83420cf1dd8SToby Isaac       PetscInt fc, f, gc, g;
83520cf1dd8SToby Isaac 
83620cf1dd8SToby Isaac       ierr = PetscPrintf(PETSC_COMM_SELF, "Element matrix for fields %d and %d\n", fieldI, fieldJ);CHKERRQ(ierr);
837ef0bb6c7SMatthew G. Knepley       for (fc = 0; fc < T[fieldI]->Nc; ++fc) {
838ef0bb6c7SMatthew G. Knepley         for (f = 0; f < T[fieldI]->Nb; ++f) {
839ef0bb6c7SMatthew G. Knepley           const PetscInt i = offsetI + f*T[fieldI]->Nc+fc;
840ef0bb6c7SMatthew G. Knepley           for (gc = 0; gc < T[fieldJ]->Nc; ++gc) {
841ef0bb6c7SMatthew G. Knepley             for (g = 0; g < T[fieldJ]->Nb; ++g) {
842ef0bb6c7SMatthew G. Knepley               const PetscInt j = offsetJ + g*T[fieldJ]->Nc+gc;
84320cf1dd8SToby Isaac               ierr = PetscPrintf(PETSC_COMM_SELF, "    elemMat[%d,%d,%d,%d]: %g\n", f, fc, g, gc, PetscRealPart(elemMat[eOffset+i*totDim+j]));CHKERRQ(ierr);
84420cf1dd8SToby Isaac             }
84520cf1dd8SToby Isaac           }
84620cf1dd8SToby Isaac           ierr = PetscPrintf(PETSC_COMM_SELF, "\n");CHKERRQ(ierr);
84720cf1dd8SToby Isaac         }
84820cf1dd8SToby Isaac       }
84920cf1dd8SToby Isaac     }
85020cf1dd8SToby Isaac     cOffset    += totDim;
85120cf1dd8SToby Isaac     cOffsetAux += totDimAux;
85220cf1dd8SToby Isaac     eOffset    += PetscSqr(totDim);
85320cf1dd8SToby Isaac   }
85420cf1dd8SToby Isaac   PetscFunctionReturn(0);
85520cf1dd8SToby Isaac }
85620cf1dd8SToby Isaac 
857*45480ffeSMatthew G. Knepley static PetscErrorCode PetscFEIntegrateBdJacobian_Basic(PetscDS ds, PetscWeakForm wf, PetscHashFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
8584bee2e38SMatthew G. Knepley                                                        const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[])
85920cf1dd8SToby Isaac {
86020cf1dd8SToby Isaac   const PetscInt     debug      = 0;
8614bee2e38SMatthew G. Knepley   PetscFE            feI, feJ;
862*45480ffeSMatthew G. Knepley   PetscBdPointJac   *g0_func, *g1_func, *g2_func, *g3_func;
863*45480ffeSMatthew G. Knepley   PetscInt           n0,       n1,       n2,       n3, i;
86420cf1dd8SToby Isaac   PetscInt           cOffset    = 0; /* Offset into coefficients[] for element e */
86520cf1dd8SToby Isaac   PetscInt           cOffsetAux = 0; /* Offset into coefficientsAux[] for element e */
86620cf1dd8SToby Isaac   PetscInt           eOffset    = 0; /* Offset into elemMat[] for element e */
86720cf1dd8SToby Isaac   PetscInt           offsetI    = 0; /* Offset into an element vector for fieldI */
86820cf1dd8SToby Isaac   PetscInt           offsetJ    = 0; /* Offset into an element vector for fieldJ */
86920cf1dd8SToby Isaac   PetscQuadrature    quad;
870ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
8714bee2e38SMatthew G. Knepley   PetscScalar       *g0, *g1, *g2, *g3, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal, *testReal, *testDerReal;
87220cf1dd8SToby Isaac   const PetscScalar *constants;
87320cf1dd8SToby Isaac   PetscReal         *x;
874ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
875ef0bb6c7SMatthew G. Knepley   PetscInt           NcI = 0, NcJ = 0;
876*45480ffeSMatthew G. Knepley   PetscInt           dim, numConstants, Nf, fieldI, fieldJ, NfAux = 0, totDim, totDimAux = 0, e;
87720cf1dd8SToby Isaac   PetscBool          isAffine;
87820cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
87920cf1dd8SToby Isaac   PetscInt           qNc, Nq, q, Np, dE;
88020cf1dd8SToby Isaac   PetscErrorCode     ierr;
88120cf1dd8SToby Isaac 
88220cf1dd8SToby Isaac   PetscFunctionBegin;
883*45480ffeSMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
884*45480ffeSMatthew G. Knepley   fieldI = key.field / Nf;
885*45480ffeSMatthew G. Knepley   fieldJ = key.field % Nf;
8864bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldI, (PetscObject *) &feI);CHKERRQ(ierr);
8874bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldJ, (PetscObject *) &feJ);CHKERRQ(ierr);
8884bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(feI, &dim);CHKERRQ(ierr);
8894bee2e38SMatthew G. Knepley   ierr = PetscFEGetFaceQuadrature(feI, &quad);CHKERRQ(ierr);
8904bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
8914bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
8924bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
8934bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldI, &offsetI);CHKERRQ(ierr);
8944bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldJ, &offsetJ);CHKERRQ(ierr);
895*45480ffeSMatthew G. Knepley   ierr = PetscWeakFormGetBdJacobian(wf, key.label, key.value, fieldI, fieldJ, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);
896*45480ffeSMatthew G. Knepley   if (!n0 && !n1 && !n2 && !n3) PetscFunctionReturn(0);
8974bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
8984bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, &testReal, &testDerReal);CHKERRQ(ierr);
8994bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, NULL, NULL, &g0, &g1, &g2, &g3);CHKERRQ(ierr);
900ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetFaceTabulation(ds, &T);CHKERRQ(ierr);
9014bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
9024bee2e38SMatthew G. Knepley   if (dsAux) {
9034bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
9044bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
9054bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
9064bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
9074bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
908ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetFaceTabulation(dsAux, &TAux);CHKERRQ(ierr);
90920cf1dd8SToby Isaac   }
910ef0bb6c7SMatthew G. Knepley   NcI = T[fieldI]->Nc, NcJ = T[fieldJ]->Nc;
91120cf1dd8SToby Isaac   Np = fgeom->numPoints;
91220cf1dd8SToby Isaac   dE = fgeom->dimEmbed;
91320cf1dd8SToby Isaac   isAffine = fgeom->isAffine;
91427f02ce8SMatthew G. Knepley   /* Initialize here in case the function is not defined */
91531f073d7SMatthew G. Knepley   ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
91627f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
91727f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
91827f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
91927f02ce8SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
92027f02ce8SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
92120cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
9229f209ee4SMatthew G. Knepley     PetscFEGeom    fegeom, cgeom;
92320cf1dd8SToby Isaac     const PetscInt face = fgeom->face[e][0];
924ea78f98cSLisandro Dalcin     fegeom.n = NULL;
925ea78f98cSLisandro Dalcin     fegeom.v = NULL;
926ea78f98cSLisandro Dalcin     fegeom.J = NULL;
927ea78f98cSLisandro Dalcin     fegeom.detJ = NULL;
92827f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
92927f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
93027f02ce8SMatthew G. Knepley     cgeom.dim       = fgeom->dim;
93127f02ce8SMatthew G. Knepley     cgeom.dimEmbed  = fgeom->dimEmbed;
9324bee2e38SMatthew G. Knepley     if (isAffine) {
9334bee2e38SMatthew G. Knepley       fegeom.v    = x;
9344bee2e38SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
9357132c3f7SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*Np*dE*dE];
9367132c3f7SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*Np*dE*dE];
9377132c3f7SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e*Np];
9387132c3f7SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*Np*dE];
9399f209ee4SMatthew G. Knepley 
9407132c3f7SMatthew G. Knepley       cgeom.J     = &fgeom->suppJ[0][e*Np*dE*dE];
9417132c3f7SMatthew G. Knepley       cgeom.invJ  = &fgeom->suppInvJ[0][e*Np*dE*dE];
9427132c3f7SMatthew G. Knepley       cgeom.detJ  = &fgeom->suppDetJ[0][e*Np];
9434bee2e38SMatthew G. Knepley     }
94420cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
94520cf1dd8SToby Isaac       PetscReal w;
9464bee2e38SMatthew G. Knepley       PetscInt  c;
94720cf1dd8SToby Isaac 
94820cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
94920cf1dd8SToby Isaac       if (isAffine) {
9507132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim-1, fegeom.xi, &fgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*(dim-1)], x);
95120cf1dd8SToby Isaac       } else {
9523fe841f2SMatthew G. Knepley         fegeom.v    = &fgeom->v[(e*Np+q)*dE];
9539f209ee4SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
9549f209ee4SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
9554bee2e38SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
9564bee2e38SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
9579f209ee4SMatthew G. Knepley 
9589f209ee4SMatthew G. Knepley         cgeom.J     = &fgeom->suppJ[0][(e*Np+q)*dE*dE];
9599f209ee4SMatthew G. Knepley         cgeom.invJ  = &fgeom->suppInvJ[0][(e*Np+q)*dE*dE];
9609f209ee4SMatthew G. Knepley         cgeom.detJ  = &fgeom->suppDetJ[0][e*Np+q];
96120cf1dd8SToby Isaac       }
9624bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
963ef0bb6c7SMatthew G. Knepley       if (coefficients) {ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, face, q, T, &cgeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);}
964ef0bb6c7SMatthew G. Knepley       if (dsAux)        {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, face, q, TAux, &cgeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
96520cf1dd8SToby Isaac       if (g0_func) {
966580bdb30SBarry Smith         ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
967*45480ffeSMatthew G. Knepley         for (i = 0; i < n0; ++i) g0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g0);
96820cf1dd8SToby Isaac         for (c = 0; c < NcI*NcJ; ++c) g0[c] *= w;
96920cf1dd8SToby Isaac       }
97020cf1dd8SToby Isaac       if (g1_func) {
97127f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
972*45480ffeSMatthew G. Knepley         for (i = 0; i < n1; ++i) g1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g1);
9734bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g1[c] *= w;
97420cf1dd8SToby Isaac       }
97520cf1dd8SToby Isaac       if (g2_func) {
97627f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
977*45480ffeSMatthew G. Knepley         for (i = 0; i < n2; ++i) g2_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g2);
9784bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g2[c] *= w;
97920cf1dd8SToby Isaac       }
98020cf1dd8SToby Isaac       if (g3_func) {
98127f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
982*45480ffeSMatthew G. Knepley         for (i = 0; i < n3; ++i) g3_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g3);
9834bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim*dim; ++c) g3[c] *= w;
98420cf1dd8SToby Isaac       }
98520cf1dd8SToby Isaac 
986ef0bb6c7SMatthew G. Knepley       ierr = PetscFEUpdateElementMat_Internal(feI, feJ, face, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &cgeom, g0, g1, g2, g3, eOffset, totDim, offsetI, offsetJ, elemMat);CHKERRQ(ierr);
98720cf1dd8SToby Isaac     }
98820cf1dd8SToby Isaac     if (debug > 1) {
98920cf1dd8SToby Isaac       PetscInt fc, f, gc, g;
99020cf1dd8SToby Isaac 
99120cf1dd8SToby Isaac       ierr = PetscPrintf(PETSC_COMM_SELF, "Element matrix for fields %d and %d\n", fieldI, fieldJ);CHKERRQ(ierr);
992ef0bb6c7SMatthew G. Knepley       for (fc = 0; fc < T[fieldI]->Nc; ++fc) {
993ef0bb6c7SMatthew G. Knepley         for (f = 0; f < T[fieldI]->Nb; ++f) {
994ef0bb6c7SMatthew G. Knepley           const PetscInt i = offsetI + f*T[fieldI]->Nc+fc;
995ef0bb6c7SMatthew G. Knepley           for (gc = 0; gc < T[fieldJ]->Nc; ++gc) {
996ef0bb6c7SMatthew G. Knepley             for (g = 0; g < T[fieldJ]->Nb; ++g) {
997ef0bb6c7SMatthew G. Knepley               const PetscInt j = offsetJ + g*T[fieldJ]->Nc+gc;
99820cf1dd8SToby Isaac               ierr = PetscPrintf(PETSC_COMM_SELF, "    elemMat[%d,%d,%d,%d]: %g\n", f, fc, g, gc, PetscRealPart(elemMat[eOffset+i*totDim+j]));CHKERRQ(ierr);
99920cf1dd8SToby Isaac             }
100020cf1dd8SToby Isaac           }
100120cf1dd8SToby Isaac           ierr = PetscPrintf(PETSC_COMM_SELF, "\n");CHKERRQ(ierr);
100220cf1dd8SToby Isaac         }
100320cf1dd8SToby Isaac       }
100420cf1dd8SToby Isaac     }
100520cf1dd8SToby Isaac     cOffset    += totDim;
100620cf1dd8SToby Isaac     cOffsetAux += totDimAux;
100720cf1dd8SToby Isaac     eOffset    += PetscSqr(totDim);
100820cf1dd8SToby Isaac   }
100920cf1dd8SToby Isaac   PetscFunctionReturn(0);
101020cf1dd8SToby Isaac }
101120cf1dd8SToby Isaac 
1012*45480ffeSMatthew G. Knepley PetscErrorCode PetscFEIntegrateHybridJacobian_Basic(PetscDS ds, PetscFEJacobianType jtype, PetscHashFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
101327f02ce8SMatthew G. Knepley                                               const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[])
101427f02ce8SMatthew G. Knepley {
101527f02ce8SMatthew G. Knepley   const PetscInt     debug      = 0;
101627f02ce8SMatthew G. Knepley   PetscFE            feI, feJ;
1017665f567fSMatthew G. Knepley   PetscBdPointJac    g0_func, g1_func, g2_func, g3_func;
101827f02ce8SMatthew G. Knepley   PetscInt           cOffset    = 0; /* Offset into coefficients[] for element e */
101927f02ce8SMatthew G. Knepley   PetscInt           cOffsetAux = 0; /* Offset into coefficientsAux[] for element e */
102027f02ce8SMatthew G. Knepley   PetscInt           eOffset    = 0; /* Offset into elemMat[] for element e */
102127f02ce8SMatthew G. Knepley   PetscInt           offsetI    = 0; /* Offset into an element vector for fieldI */
102227f02ce8SMatthew G. Knepley   PetscInt           offsetJ    = 0; /* Offset into an element vector for fieldJ */
1023665f567fSMatthew G. Knepley   PetscQuadrature    quad;
1024665f567fSMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
102527f02ce8SMatthew G. Knepley   PetscScalar       *g0, *g1, *g2, *g3, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal, *testReal, *testDerReal;
102627f02ce8SMatthew G. Knepley   const PetscScalar *constants;
102727f02ce8SMatthew G. Knepley   PetscReal         *x;
1028665f567fSMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
1029665f567fSMatthew G. Knepley   PetscInt           NcI = 0, NcJ = 0, NcS, NcT;
1030*45480ffeSMatthew G. Knepley   PetscInt           dim, dimAux, numConstants, Nf, fieldI, fieldJ, NfAux = 0, totDim, totDimAux = 0, e;
1031665f567fSMatthew G. Knepley   PetscBool          isCohesiveFieldI, isCohesiveFieldJ, isAffine, auxOnBd = PETSC_FALSE;
103227f02ce8SMatthew G. Knepley   const PetscReal   *quadPoints, *quadWeights;
103327f02ce8SMatthew G. Knepley   PetscInt           qNc, Nq, q, Np, dE;
103427f02ce8SMatthew G. Knepley   PetscErrorCode     ierr;
103527f02ce8SMatthew G. Knepley 
103627f02ce8SMatthew G. Knepley   PetscFunctionBegin;
1037*45480ffeSMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
1038*45480ffeSMatthew G. Knepley   fieldI = key.field / Nf;
1039*45480ffeSMatthew G. Knepley   fieldJ = key.field % Nf;
104027f02ce8SMatthew G. Knepley   /* Hybrid discretization is posed directly on faces */
104127f02ce8SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldI, (PetscObject *) &feI);CHKERRQ(ierr);
104227f02ce8SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldJ, (PetscObject *) &feJ);CHKERRQ(ierr);
104327f02ce8SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(feI, &dim);CHKERRQ(ierr);
104427f02ce8SMatthew G. Knepley   ierr = PetscFEGetQuadrature(feI, &quad);CHKERRQ(ierr);
104527f02ce8SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
104627f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
104727f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
104827f02ce8SMatthew G. Knepley   switch(jtype) {
104927f02ce8SMatthew G. Knepley   case PETSCFE_JACOBIAN_PRE: ierr = PetscDSGetBdJacobianPreconditioner(ds, fieldI, fieldJ, &g0_func, &g1_func, &g2_func, &g3_func);CHKERRQ(ierr);break;
105027f02ce8SMatthew G. Knepley   case PETSCFE_JACOBIAN:     ierr = PetscDSGetBdJacobian(ds, fieldI, fieldJ, &g0_func, &g1_func, &g2_func, &g3_func);CHKERRQ(ierr);break;
1051665f567fSMatthew G. Knepley   case PETSCFE_JACOBIAN_DYN: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No boundary hybrid Jacobians :)");
105227f02ce8SMatthew G. Knepley   }
105327f02ce8SMatthew G. Knepley   if (!g0_func && !g1_func && !g2_func && !g3_func) PetscFunctionReturn(0);
105427f02ce8SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
105527f02ce8SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, &testReal, &testDerReal);CHKERRQ(ierr);
105627f02ce8SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, NULL, NULL, &g0, &g1, &g2, &g3);CHKERRQ(ierr);
1057665f567fSMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
1058665f567fSMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldI, &offsetI);CHKERRQ(ierr);
1059665f567fSMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldJ, &offsetJ);CHKERRQ(ierr);
106027f02ce8SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
106127f02ce8SMatthew G. Knepley   if (dsAux) {
106227f02ce8SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
106327f02ce8SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
106427f02ce8SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
106527f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
106627f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
106727f02ce8SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
106801907d53SMatthew G. Knepley     auxOnBd = dimAux == dim ? PETSC_TRUE : PETSC_FALSE;
1069665f567fSMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);}
1070665f567fSMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TAux);CHKERRQ(ierr);}
107101907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
107227f02ce8SMatthew G. Knepley   }
107327f02ce8SMatthew G. Knepley   isCohesiveFieldI = fieldI == Nf-1 ? PETSC_TRUE : PETSC_FALSE;
107427f02ce8SMatthew G. Knepley   isCohesiveFieldJ = fieldJ == Nf-1 ? PETSC_TRUE : PETSC_FALSE;
1075665f567fSMatthew G. Knepley   NcI = T[fieldI]->Nc;
1076665f567fSMatthew G. Knepley   NcJ = T[fieldJ]->Nc;
107727f02ce8SMatthew G. Knepley   NcS = isCohesiveFieldI ? NcI : 2*NcI;
107827f02ce8SMatthew G. Knepley   NcT = isCohesiveFieldJ ? NcJ : 2*NcJ;
107927f02ce8SMatthew G. Knepley   Np = fgeom->numPoints;
108027f02ce8SMatthew G. Knepley   dE = fgeom->dimEmbed;
108127f02ce8SMatthew G. Knepley   isAffine = fgeom->isAffine;
108227f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g0, NcS*NcT);CHKERRQ(ierr);
108327f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g1, NcS*NcT*dE);CHKERRQ(ierr);
108427f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g2, NcS*NcT*dE);CHKERRQ(ierr);
108527f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g3, NcS*NcT*dE*dE);CHKERRQ(ierr);
1086665f567fSMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
1087665f567fSMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
108827f02ce8SMatthew G. Knepley   for (e = 0; e < Ne; ++e) {
108927f02ce8SMatthew G. Knepley     PetscFEGeom    fegeom;
109027f02ce8SMatthew G. Knepley     const PetscInt face = fgeom->face[e][0];
109127f02ce8SMatthew G. Knepley 
109227f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
109327f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
109427f02ce8SMatthew G. Knepley     if (isAffine) {
109527f02ce8SMatthew G. Knepley       fegeom.v    = x;
109627f02ce8SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
109727f02ce8SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*dE*dE];
109827f02ce8SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*dE*dE];
109927f02ce8SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e];
110027f02ce8SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*dE];
110127f02ce8SMatthew G. Knepley     }
110227f02ce8SMatthew G. Knepley     for (q = 0; q < Nq; ++q) {
110327f02ce8SMatthew G. Knepley       PetscReal w;
110427f02ce8SMatthew G. Knepley       PetscInt  c;
110527f02ce8SMatthew G. Knepley 
110627f02ce8SMatthew G. Knepley       if (isAffine) {
110727f02ce8SMatthew G. Knepley         /* TODO Is it correct to have 'dim' here, or should it be 'dim-1'? */
110827f02ce8SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &fgeom->v[e*dE], fegeom.J, &quadPoints[q*dim], x);
110927f02ce8SMatthew G. Knepley       } else {
111027f02ce8SMatthew G. Knepley         fegeom.v    = &fegeom.v[(e*Np+q)*dE];
111127f02ce8SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
111227f02ce8SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
111327f02ce8SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
111427f02ce8SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
111527f02ce8SMatthew G. Knepley       }
111627f02ce8SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
111727f02ce8SMatthew G. Knepley       if (debug > 1 && q < Np) {
111827f02ce8SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
111927f02ce8SMatthew G. Knepley #if !defined(PETSC_USE_COMPLEX)
112027f02ce8SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
112127f02ce8SMatthew G. Knepley #endif
112227f02ce8SMatthew G. Knepley       }
112327f02ce8SMatthew G. Knepley       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
1124665f567fSMatthew G. Knepley       if (coefficients) {ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);}
1125665f567fSMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(dsAux, NfAux, 0, auxOnBd ? q : face*Nq+q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
112627f02ce8SMatthew G. Knepley       if (g0_func) {
112727f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g0, NcS*NcT);CHKERRQ(ierr);
112827f02ce8SMatthew G. Knepley         g0_func(dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g0);
112927f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT; ++c) g0[c] *= w;
113027f02ce8SMatthew G. Knepley       }
113127f02ce8SMatthew G. Knepley       if (g1_func) {
113227f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g1, NcS*NcT*dE);CHKERRQ(ierr);
113327f02ce8SMatthew G. Knepley         g1_func(dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g1);
113427f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT*dE; ++c) g1[c] *= w;
113527f02ce8SMatthew G. Knepley       }
113627f02ce8SMatthew G. Knepley       if (g2_func) {
113727f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g2, NcS*NcT*dE);CHKERRQ(ierr);
113827f02ce8SMatthew G. Knepley         g2_func(dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g2);
113927f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT*dE; ++c) g2[c] *= w;
114027f02ce8SMatthew G. Knepley       }
114127f02ce8SMatthew G. Knepley       if (g3_func) {
114227f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g3, NcS*NcT*dE*dE);CHKERRQ(ierr);
114327f02ce8SMatthew G. Knepley         g3_func(dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g3);
114427f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT*dE*dE; ++c) g3[c] *= w;
114527f02ce8SMatthew G. Knepley       }
114627f02ce8SMatthew G. Knepley 
114727f02ce8SMatthew G. Knepley       if (isCohesiveFieldI && isCohesiveFieldJ) {
1148665f567fSMatthew G. Knepley         ierr = PetscFEUpdateElementMat_Internal(feI, feJ, 0, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &fegeom, g0, g1, g2, g3, eOffset, totDim, offsetI*2, offsetJ*2, elemMat);CHKERRQ(ierr);
114927f02ce8SMatthew G. Knepley       } else {
1150665f567fSMatthew G. Knepley         ierr = PetscFEUpdateElementMat_Hybrid_Internal(feI, isCohesiveFieldI, feJ, isCohesiveFieldJ, 0, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &fegeom, g0, g1, g2, g3, eOffset, totDim, offsetI*2, offsetJ*2, elemMat);CHKERRQ(ierr);
115127f02ce8SMatthew G. Knepley       }
115227f02ce8SMatthew G. Knepley     }
115327f02ce8SMatthew G. Knepley     if (debug > 1) {
115427f02ce8SMatthew G. Knepley       PetscInt fc, f, gc, g;
115527f02ce8SMatthew G. Knepley 
115627f02ce8SMatthew G. Knepley       ierr = PetscPrintf(PETSC_COMM_SELF, "Element matrix for fields %d and %d\n", fieldI, fieldJ);CHKERRQ(ierr);
115727f02ce8SMatthew G. Knepley       for (fc = 0; fc < NcI; ++fc) {
1158665f567fSMatthew G. Knepley         for (f = 0; f < T[fieldI]->Nb; ++f) {
115927f02ce8SMatthew G. Knepley           const PetscInt i = offsetI + f*NcI+fc;
116027f02ce8SMatthew G. Knepley           for (gc = 0; gc < NcJ; ++gc) {
1161665f567fSMatthew G. Knepley             for (g = 0; g < T[fieldJ]->Nb; ++g) {
116227f02ce8SMatthew G. Knepley               const PetscInt j = offsetJ + g*NcJ+gc;
116327f02ce8SMatthew G. Knepley               ierr = PetscPrintf(PETSC_COMM_SELF, "    elemMat[%d,%d,%d,%d]: %g\n", f, fc, g, gc, PetscRealPart(elemMat[eOffset+i*totDim+j]));CHKERRQ(ierr);
116427f02ce8SMatthew G. Knepley             }
116527f02ce8SMatthew G. Knepley           }
116627f02ce8SMatthew G. Knepley           ierr = PetscPrintf(PETSC_COMM_SELF, "\n");CHKERRQ(ierr);
116727f02ce8SMatthew G. Knepley         }
116827f02ce8SMatthew G. Knepley       }
116927f02ce8SMatthew G. Knepley     }
117027f02ce8SMatthew G. Knepley     cOffset    += totDim;
117127f02ce8SMatthew G. Knepley     cOffsetAux += totDimAux;
117227f02ce8SMatthew G. Knepley     eOffset    += PetscSqr(totDim);
117327f02ce8SMatthew G. Knepley   }
117427f02ce8SMatthew G. Knepley   PetscFunctionReturn(0);
117527f02ce8SMatthew G. Knepley }
117627f02ce8SMatthew G. Knepley 
11772b99622eSMatthew G. Knepley static PetscErrorCode PetscFEInitialize_Basic(PetscFE fem)
117820cf1dd8SToby Isaac {
117920cf1dd8SToby Isaac   PetscFunctionBegin;
118020cf1dd8SToby Isaac   fem->ops->setfromoptions          = NULL;
118120cf1dd8SToby Isaac   fem->ops->setup                   = PetscFESetUp_Basic;
118220cf1dd8SToby Isaac   fem->ops->view                    = PetscFEView_Basic;
118320cf1dd8SToby Isaac   fem->ops->destroy                 = PetscFEDestroy_Basic;
118420cf1dd8SToby Isaac   fem->ops->getdimension            = PetscFEGetDimension_Basic;
1185ef0bb6c7SMatthew G. Knepley   fem->ops->createtabulation        = PetscFECreateTabulation_Basic;
118620cf1dd8SToby Isaac   fem->ops->integrate               = PetscFEIntegrate_Basic;
1187afe6d6adSToby Isaac   fem->ops->integratebd             = PetscFEIntegrateBd_Basic;
118820cf1dd8SToby Isaac   fem->ops->integrateresidual       = PetscFEIntegrateResidual_Basic;
118920cf1dd8SToby Isaac   fem->ops->integratebdresidual     = PetscFEIntegrateBdResidual_Basic;
119027f02ce8SMatthew G. Knepley   fem->ops->integratehybridresidual = PetscFEIntegrateHybridResidual_Basic;
119120cf1dd8SToby Isaac   fem->ops->integratejacobianaction = NULL/* PetscFEIntegrateJacobianAction_Basic */;
119220cf1dd8SToby Isaac   fem->ops->integratejacobian       = PetscFEIntegrateJacobian_Basic;
119320cf1dd8SToby Isaac   fem->ops->integratebdjacobian     = PetscFEIntegrateBdJacobian_Basic;
119427f02ce8SMatthew G. Knepley   fem->ops->integratehybridjacobian = PetscFEIntegrateHybridJacobian_Basic;
119520cf1dd8SToby Isaac   PetscFunctionReturn(0);
119620cf1dd8SToby Isaac }
119720cf1dd8SToby Isaac 
119820cf1dd8SToby Isaac /*MC
119920cf1dd8SToby Isaac   PETSCFEBASIC = "basic" - A PetscFE object that integrates with basic tiling and no vectorization
120020cf1dd8SToby Isaac 
120120cf1dd8SToby Isaac   Level: intermediate
120220cf1dd8SToby Isaac 
120320cf1dd8SToby Isaac .seealso: PetscFEType, PetscFECreate(), PetscFESetType()
120420cf1dd8SToby Isaac M*/
120520cf1dd8SToby Isaac 
120620cf1dd8SToby Isaac PETSC_EXTERN PetscErrorCode PetscFECreate_Basic(PetscFE fem)
120720cf1dd8SToby Isaac {
120820cf1dd8SToby Isaac   PetscFE_Basic *b;
120920cf1dd8SToby Isaac   PetscErrorCode ierr;
121020cf1dd8SToby Isaac 
121120cf1dd8SToby Isaac   PetscFunctionBegin;
121220cf1dd8SToby Isaac   PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1);
121320cf1dd8SToby Isaac   ierr      = PetscNewLog(fem,&b);CHKERRQ(ierr);
121420cf1dd8SToby Isaac   fem->data = b;
121520cf1dd8SToby Isaac 
121620cf1dd8SToby Isaac   ierr = PetscFEInitialize_Basic(fem);CHKERRQ(ierr);
121720cf1dd8SToby Isaac   PetscFunctionReturn(0);
121820cf1dd8SToby Isaac }
1219