xref: /petsc/src/dm/dt/fe/impls/basic/febasic.c (revision 6587ee25fe32caa17c23170c94394ddbe328f69a)
120cf1dd8SToby Isaac #include <petsc/private/petscfeimpl.h> /*I "petscfe.h" I*/
220cf1dd8SToby Isaac #include <petscblaslapack.h>
320cf1dd8SToby Isaac 
42b99622eSMatthew G. Knepley static PetscErrorCode PetscFEDestroy_Basic(PetscFE fem)
520cf1dd8SToby Isaac {
620cf1dd8SToby Isaac   PetscFE_Basic *b = (PetscFE_Basic *) fem->data;
720cf1dd8SToby Isaac   PetscErrorCode ierr;
820cf1dd8SToby Isaac 
920cf1dd8SToby Isaac   PetscFunctionBegin;
1020cf1dd8SToby Isaac   ierr = PetscFree(b);CHKERRQ(ierr);
1120cf1dd8SToby Isaac   PetscFunctionReturn(0);
1220cf1dd8SToby Isaac }
1320cf1dd8SToby Isaac 
142b99622eSMatthew G. Knepley static PetscErrorCode PetscFEView_Basic_Ascii(PetscFE fe, PetscViewer v)
1520cf1dd8SToby Isaac {
16d9bac1caSLisandro Dalcin   PetscInt          dim, Nc;
17d9bac1caSLisandro Dalcin   PetscSpace        basis = NULL;
18d9bac1caSLisandro Dalcin   PetscDualSpace    dual = NULL;
19d9bac1caSLisandro Dalcin   PetscQuadrature   quad = NULL;
2020cf1dd8SToby Isaac   PetscErrorCode    ierr;
2120cf1dd8SToby Isaac 
2220cf1dd8SToby Isaac   PetscFunctionBegin;
23d9bac1caSLisandro Dalcin   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
24d9bac1caSLisandro Dalcin   ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
2520cf1dd8SToby Isaac   ierr = PetscFEGetBasisSpace(fe, &basis);CHKERRQ(ierr);
2620cf1dd8SToby Isaac   ierr = PetscFEGetDualSpace(fe, &dual);CHKERRQ(ierr);
27d9bac1caSLisandro Dalcin   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
28d9bac1caSLisandro Dalcin   ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr);
29d9bac1caSLisandro Dalcin   ierr = PetscViewerASCIIPrintf(v, "Basic Finite Element in %D dimensions with %D components\n",dim,Nc);CHKERRQ(ierr);
30d9bac1caSLisandro Dalcin   if (basis) {ierr = PetscSpaceView(basis, v);CHKERRQ(ierr);}
31d9bac1caSLisandro Dalcin   if (dual)  {ierr = PetscDualSpaceView(dual, v);CHKERRQ(ierr);}
32d9bac1caSLisandro Dalcin   if (quad)  {ierr = PetscQuadratureView(quad, v);CHKERRQ(ierr);}
33d9bac1caSLisandro Dalcin   ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr);
3420cf1dd8SToby Isaac   PetscFunctionReturn(0);
3520cf1dd8SToby Isaac }
3620cf1dd8SToby Isaac 
372b99622eSMatthew G. Knepley static PetscErrorCode PetscFEView_Basic(PetscFE fe, PetscViewer v)
3820cf1dd8SToby Isaac {
3920cf1dd8SToby Isaac   PetscBool      iascii;
4020cf1dd8SToby Isaac   PetscErrorCode ierr;
4120cf1dd8SToby Isaac 
4220cf1dd8SToby Isaac   PetscFunctionBegin;
43d9bac1caSLisandro Dalcin   ierr = PetscObjectTypeCompare((PetscObject) v, PETSCVIEWERASCII, &iascii);CHKERRQ(ierr);
44d9bac1caSLisandro Dalcin   if (iascii) {ierr = PetscFEView_Basic_Ascii(fe, v);CHKERRQ(ierr);}
4520cf1dd8SToby Isaac   PetscFunctionReturn(0);
4620cf1dd8SToby Isaac }
4720cf1dd8SToby Isaac 
4820cf1dd8SToby Isaac /* Construct the change of basis from prime basis to nodal basis */
49526996e7SStefano Zampini PETSC_INTERN PetscErrorCode PetscFESetUp_Basic(PetscFE fem)
5020cf1dd8SToby Isaac {
51b9d4cb8dSJed Brown   PetscReal     *work;
5220cf1dd8SToby Isaac   PetscBLASInt  *pivots;
5320cf1dd8SToby Isaac   PetscBLASInt   n, info;
5420cf1dd8SToby Isaac   PetscInt       pdim, j;
5520cf1dd8SToby Isaac   PetscErrorCode ierr;
5620cf1dd8SToby Isaac 
5720cf1dd8SToby Isaac   PetscFunctionBegin;
5820cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDimension(fem->dualSpace, &pdim);CHKERRQ(ierr);
5920cf1dd8SToby Isaac   ierr = PetscMalloc1(pdim*pdim,&fem->invV);CHKERRQ(ierr);
6020cf1dd8SToby Isaac   for (j = 0; j < pdim; ++j) {
6120cf1dd8SToby Isaac     PetscReal       *Bf;
6220cf1dd8SToby Isaac     PetscQuadrature  f;
6320cf1dd8SToby Isaac     const PetscReal *points, *weights;
6420cf1dd8SToby Isaac     PetscInt         Nc, Nq, q, k, c;
6520cf1dd8SToby Isaac 
6620cf1dd8SToby Isaac     ierr = PetscDualSpaceGetFunctional(fem->dualSpace, j, &f);CHKERRQ(ierr);
6720cf1dd8SToby Isaac     ierr = PetscQuadratureGetData(f, NULL, &Nc, &Nq, &points, &weights);CHKERRQ(ierr);
6820cf1dd8SToby Isaac     ierr = PetscMalloc1(Nc*Nq*pdim,&Bf);CHKERRQ(ierr);
6920cf1dd8SToby Isaac     ierr = PetscSpaceEvaluate(fem->basisSpace, Nq, points, Bf, NULL, NULL);CHKERRQ(ierr);
7020cf1dd8SToby Isaac     for (k = 0; k < pdim; ++k) {
7120cf1dd8SToby Isaac       /* V_{jk} = n_j(\phi_k) = \int \phi_k(x) n_j(x) dx */
72b9d4cb8dSJed Brown       fem->invV[j*pdim+k] = 0.0;
7320cf1dd8SToby Isaac 
7420cf1dd8SToby Isaac       for (q = 0; q < Nq; ++q) {
75b9d4cb8dSJed Brown         for (c = 0; c < Nc; ++c) fem->invV[j*pdim+k] += Bf[(q*pdim + k)*Nc + c]*weights[q*Nc + c];
7620cf1dd8SToby Isaac       }
7720cf1dd8SToby Isaac     }
7820cf1dd8SToby Isaac     ierr = PetscFree(Bf);CHKERRQ(ierr);
7920cf1dd8SToby Isaac   }
80ea2bdf6dSBarry Smith 
8120cf1dd8SToby Isaac   ierr = PetscMalloc2(pdim,&pivots,pdim,&work);CHKERRQ(ierr);
8220cf1dd8SToby Isaac   n = pdim;
83b9d4cb8dSJed Brown   PetscStackCallBLAS("LAPACKgetrf", LAPACKREALgetrf_(&n, &n, fem->invV, &n, pivots, &info));
84ea2bdf6dSBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetrf %D",(PetscInt)info);
85b9d4cb8dSJed Brown   PetscStackCallBLAS("LAPACKgetri", LAPACKREALgetri_(&n, fem->invV, &n, pivots, work, &n, &info));
86ea2bdf6dSBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetri %D",(PetscInt)info);
8720cf1dd8SToby Isaac   ierr = PetscFree2(pivots,work);CHKERRQ(ierr);
8820cf1dd8SToby Isaac   PetscFunctionReturn(0);
8920cf1dd8SToby Isaac }
9020cf1dd8SToby Isaac 
9120cf1dd8SToby Isaac PetscErrorCode PetscFEGetDimension_Basic(PetscFE fem, PetscInt *dim)
9220cf1dd8SToby Isaac {
9320cf1dd8SToby Isaac   PetscErrorCode ierr;
9420cf1dd8SToby Isaac 
9520cf1dd8SToby Isaac   PetscFunctionBegin;
9620cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDimension(fem->dualSpace, dim);CHKERRQ(ierr);
9720cf1dd8SToby Isaac   PetscFunctionReturn(0);
9820cf1dd8SToby Isaac }
9920cf1dd8SToby Isaac 
100b9d4cb8dSJed Brown /* Tensor contraction on the middle index,
101b9d4cb8dSJed Brown  *    C[m,n,p] = A[m,k,p] * B[k,n]
102b9d4cb8dSJed Brown  * where all matrices use C-style ordering.
103b9d4cb8dSJed Brown  */
104bdb10af2SPierre Jolivet static PetscErrorCode TensorContract_Private(PetscInt m,PetscInt n,PetscInt p,PetscInt k,const PetscReal *A,const PetscReal *B,PetscReal *C)
105bdb10af2SPierre Jolivet {
106b9d4cb8dSJed Brown   PetscErrorCode ierr;
107b9d4cb8dSJed Brown   PetscInt i;
108b9d4cb8dSJed Brown 
109b9d4cb8dSJed Brown   PetscFunctionBegin;
110b9d4cb8dSJed Brown   for (i=0; i<m; i++) {
111b9d4cb8dSJed Brown     PetscBLASInt n_,p_,k_,lda,ldb,ldc;
112b9d4cb8dSJed Brown     PetscReal one = 1, zero = 0;
113b9d4cb8dSJed Brown     /* Taking contiguous submatrices, we wish to comput c[n,p] = a[k,p] * B[k,n]
114b9d4cb8dSJed Brown      * or, in Fortran ordering, c(p,n) = a(p,k) * B(n,k)
115b9d4cb8dSJed Brown      */
116b9d4cb8dSJed Brown     ierr = PetscBLASIntCast(n,&n_);CHKERRQ(ierr);
117b9d4cb8dSJed Brown     ierr = PetscBLASIntCast(p,&p_);CHKERRQ(ierr);
118b9d4cb8dSJed Brown     ierr = PetscBLASIntCast(k,&k_);CHKERRQ(ierr);
119b9d4cb8dSJed Brown     lda = p_;
120b9d4cb8dSJed Brown     ldb = n_;
121b9d4cb8dSJed Brown     ldc = p_;
122b9d4cb8dSJed Brown     PetscStackCallBLAS("BLASgemm",BLASREALgemm_("N","T",&p_,&n_,&k_,&one,A+i*k*p,&lda,B,&ldb,&zero,C+i*n*p,&ldc));
123b9d4cb8dSJed Brown   }
1246485a3bbSJed Brown   ierr = PetscLogFlops(2.*m*n*p*k);CHKERRQ(ierr);
125b9d4cb8dSJed Brown   PetscFunctionReturn(0);
126b9d4cb8dSJed Brown }
127b9d4cb8dSJed Brown 
128526996e7SStefano Zampini PETSC_INTERN PetscErrorCode PetscFECreateTabulation_Basic(PetscFE fem, PetscInt npoints, const PetscReal points[], PetscInt K, PetscTabulation T)
12920cf1dd8SToby Isaac {
13020cf1dd8SToby Isaac   DM               dm;
13120cf1dd8SToby Isaac   PetscInt         pdim; /* Dimension of FE space P */
13220cf1dd8SToby Isaac   PetscInt         dim;  /* Spatial dimension */
13320cf1dd8SToby Isaac   PetscInt         Nc;   /* Field components */
134ef0bb6c7SMatthew G. Knepley   PetscReal       *B = K >= 0 ? T->T[0] : NULL;
135ef0bb6c7SMatthew G. Knepley   PetscReal       *D = K >= 1 ? T->T[1] : NULL;
136ef0bb6c7SMatthew G. Knepley   PetscReal       *H = K >= 2 ? T->T[2] : NULL;
137ef0bb6c7SMatthew G. Knepley   PetscReal       *tmpB = NULL, *tmpD = NULL, *tmpH = NULL;
13820cf1dd8SToby Isaac   PetscErrorCode   ierr;
13920cf1dd8SToby Isaac 
14020cf1dd8SToby Isaac   PetscFunctionBegin;
14120cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDM(fem->dualSpace, &dm);CHKERRQ(ierr);
14220cf1dd8SToby Isaac   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
14320cf1dd8SToby Isaac   ierr = PetscDualSpaceGetDimension(fem->dualSpace, &pdim);CHKERRQ(ierr);
14420cf1dd8SToby Isaac   ierr = PetscFEGetNumComponents(fem, &Nc);CHKERRQ(ierr);
14520cf1dd8SToby Isaac   /* Evaluate the prime basis functions at all points */
146ef0bb6c7SMatthew G. Knepley   if (K >= 0) {ierr = DMGetWorkArray(dm, npoints*pdim*Nc, MPIU_REAL, &tmpB);CHKERRQ(ierr);}
147ef0bb6c7SMatthew G. Knepley   if (K >= 1) {ierr = DMGetWorkArray(dm, npoints*pdim*Nc*dim, MPIU_REAL, &tmpD);CHKERRQ(ierr);}
148ef0bb6c7SMatthew G. Knepley   if (K >= 2) {ierr = DMGetWorkArray(dm, npoints*pdim*Nc*dim*dim, MPIU_REAL, &tmpH);CHKERRQ(ierr);}
149ef0bb6c7SMatthew G. Knepley   ierr = PetscSpaceEvaluate(fem->basisSpace, npoints, points, tmpB, tmpD, tmpH);CHKERRQ(ierr);
150b9d4cb8dSJed Brown   /* Translate from prime to nodal basis */
15120cf1dd8SToby Isaac   if (B) {
152b9d4cb8dSJed Brown     /* B[npoints, nodes, Nc] = tmpB[npoints, prime, Nc] * invV[prime, nodes] */
153b9d4cb8dSJed Brown     ierr = TensorContract_Private(npoints, pdim, Nc, pdim, tmpB, fem->invV, B);CHKERRQ(ierr);
15420cf1dd8SToby Isaac   }
15520cf1dd8SToby Isaac   if (D) {
156b9d4cb8dSJed Brown     /* D[npoints, nodes, Nc, dim] = tmpD[npoints, prime, Nc, dim] * invV[prime, nodes] */
157b9d4cb8dSJed Brown     ierr = TensorContract_Private(npoints, pdim, Nc*dim, pdim, tmpD, fem->invV, D);CHKERRQ(ierr);
15820cf1dd8SToby Isaac   }
15920cf1dd8SToby Isaac   if (H) {
160b9d4cb8dSJed Brown     /* H[npoints, nodes, Nc, dim, dim] = tmpH[npoints, prime, Nc, dim, dim] * invV[prime, nodes] */
161b9d4cb8dSJed Brown     ierr = TensorContract_Private(npoints, pdim, Nc*dim*dim, pdim, tmpH, fem->invV, H);CHKERRQ(ierr);
16220cf1dd8SToby Isaac   }
163ef0bb6c7SMatthew G. Knepley   if (K >= 0) {ierr = DMRestoreWorkArray(dm, npoints*pdim*Nc, MPIU_REAL, &tmpB);CHKERRQ(ierr);}
164ef0bb6c7SMatthew G. Knepley   if (K >= 1) {ierr = DMRestoreWorkArray(dm, npoints*pdim*Nc*dim, MPIU_REAL, &tmpD);CHKERRQ(ierr);}
165ef0bb6c7SMatthew G. Knepley   if (K >= 2) {ierr = DMRestoreWorkArray(dm, npoints*pdim*Nc*dim*dim, MPIU_REAL, &tmpH);CHKERRQ(ierr);}
16620cf1dd8SToby Isaac   PetscFunctionReturn(0);
16720cf1dd8SToby Isaac }
16820cf1dd8SToby Isaac 
1692b99622eSMatthew G. Knepley static PetscErrorCode PetscFEIntegrate_Basic(PetscDS ds, PetscInt field, PetscInt Ne, PetscFEGeom *cgeom,
1704bee2e38SMatthew G. Knepley                                              const PetscScalar coefficients[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscScalar integral[])
17120cf1dd8SToby Isaac {
17220cf1dd8SToby Isaac   const PetscInt     debug = 0;
1734bee2e38SMatthew G. Knepley   PetscFE            fe;
17420cf1dd8SToby Isaac   PetscPointFunc     obj_func;
17520cf1dd8SToby Isaac   PetscQuadrature    quad;
176ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
1774bee2e38SMatthew G. Knepley   PetscScalar       *u, *u_x, *a, *a_x;
17820cf1dd8SToby Isaac   const PetscScalar *constants;
17920cf1dd8SToby Isaac   PetscReal         *x;
180ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
18120cf1dd8SToby Isaac   PetscInt           dim, dE, Np, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, e;
18220cf1dd8SToby Isaac   PetscBool          isAffine;
18320cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
18420cf1dd8SToby Isaac   PetscInt           qNc, Nq, q;
18520cf1dd8SToby Isaac   PetscErrorCode     ierr;
18620cf1dd8SToby Isaac 
18720cf1dd8SToby Isaac   PetscFunctionBegin;
1884bee2e38SMatthew G. Knepley   ierr = PetscDSGetObjective(ds, field, &obj_func);CHKERRQ(ierr);
18920cf1dd8SToby Isaac   if (!obj_func) PetscFunctionReturn(0);
1904bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
1914bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
1924bee2e38SMatthew G. Knepley   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
1934bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
1944bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
1954bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
1964bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
197ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
1984bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, NULL, &u_x);CHKERRQ(ierr);
1994bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
2004bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
2014bee2e38SMatthew G. Knepley   if (dsAux) {
2024bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
2034bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
2044bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
2054bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
206ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);
2074bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
20801907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
20920cf1dd8SToby Isaac   }
21020cf1dd8SToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
2114bee2e38SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
21220cf1dd8SToby Isaac   Np = cgeom->numPoints;
21320cf1dd8SToby Isaac   dE = cgeom->dimEmbed;
21420cf1dd8SToby Isaac   isAffine = cgeom->isAffine;
21520cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
2164bee2e38SMatthew G. Knepley     PetscFEGeom fegeom;
21720cf1dd8SToby Isaac 
21827f02ce8SMatthew G. Knepley     fegeom.dim      = cgeom->dim;
21927f02ce8SMatthew G. Knepley     fegeom.dimEmbed = cgeom->dimEmbed;
22020cf1dd8SToby Isaac     if (isAffine) {
2214bee2e38SMatthew G. Knepley       fegeom.v    = x;
2224bee2e38SMatthew G. Knepley       fegeom.xi   = cgeom->xi;
2237132c3f7SMatthew G. Knepley       fegeom.J    = &cgeom->J[e*Np*dE*dE];
2247132c3f7SMatthew G. Knepley       fegeom.invJ = &cgeom->invJ[e*Np*dE*dE];
2257132c3f7SMatthew G. Knepley       fegeom.detJ = &cgeom->detJ[e*Np];
22620cf1dd8SToby Isaac     }
2274bee2e38SMatthew G. Knepley     for (q = 0; q < Nq; ++q) {
2284bee2e38SMatthew G. Knepley       PetscScalar integrand;
2294bee2e38SMatthew G. Knepley       PetscReal   w;
2304bee2e38SMatthew G. Knepley 
2314bee2e38SMatthew G. Knepley       if (isAffine) {
2327132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &cgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*dim], x);
2334bee2e38SMatthew G. Knepley       } else {
2344bee2e38SMatthew G. Knepley         fegeom.v    = &cgeom->v[(e*Np+q)*dE];
2354bee2e38SMatthew G. Knepley         fegeom.J    = &cgeom->J[(e*Np+q)*dE*dE];
2364bee2e38SMatthew G. Knepley         fegeom.invJ = &cgeom->invJ[(e*Np+q)*dE*dE];
2374bee2e38SMatthew G. Knepley         fegeom.detJ = &cgeom->detJ[e*Np+q];
2384bee2e38SMatthew G. Knepley       }
2394bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
24020cf1dd8SToby Isaac       if (debug > 1 && q < Np) {
2414bee2e38SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
2427be5e748SToby Isaac #if !defined(PETSC_USE_COMPLEX)
2434bee2e38SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
24420cf1dd8SToby Isaac #endif
24520cf1dd8SToby Isaac       }
24620cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
247ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], NULL, u, u_x, NULL);CHKERRQ(ierr);
248ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, 0, q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
2494bee2e38SMatthew G. Knepley       obj_func(dim, Nf, NfAux, uOff, uOff_x, u, NULL, u_x, aOff, aOff_x, a, NULL, a_x, 0.0, fegeom.v, numConstants, constants, &integrand);
2504bee2e38SMatthew G. Knepley       integrand *= w;
25120cf1dd8SToby Isaac       integral[e*Nf+field] += integrand;
25220cf1dd8SToby Isaac       if (debug > 1) {ierr = PetscPrintf(PETSC_COMM_SELF, "    int: %g %g\n", (double) PetscRealPart(integrand), (double) PetscRealPart(integral[field]));CHKERRQ(ierr);}
25320cf1dd8SToby Isaac     }
25420cf1dd8SToby Isaac     cOffset    += totDim;
25520cf1dd8SToby Isaac     cOffsetAux += totDimAux;
25620cf1dd8SToby Isaac   }
25720cf1dd8SToby Isaac   PetscFunctionReturn(0);
25820cf1dd8SToby Isaac }
25920cf1dd8SToby Isaac 
2602b99622eSMatthew G. Knepley static PetscErrorCode PetscFEIntegrateBd_Basic(PetscDS ds, PetscInt field,
261afe6d6adSToby Isaac                                                PetscBdPointFunc obj_func,
2624bee2e38SMatthew G. Knepley                                                PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscScalar integral[])
263afe6d6adSToby Isaac {
264afe6d6adSToby Isaac   const PetscInt     debug = 0;
2654bee2e38SMatthew G. Knepley   PetscFE            fe;
266afe6d6adSToby Isaac   PetscQuadrature    quad;
267ef0bb6c7SMatthew G. Knepley   PetscTabulation   *Tf, *TfAux = NULL;
2684bee2e38SMatthew G. Knepley   PetscScalar       *u, *u_x, *a, *a_x, *basisReal, *basisDerReal;
269afe6d6adSToby Isaac   const PetscScalar *constants;
270afe6d6adSToby Isaac   PetscReal         *x;
271ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
272afe6d6adSToby Isaac   PetscBool          isAffine, auxOnBd;
273afe6d6adSToby Isaac   const PetscReal   *quadPoints, *quadWeights;
274afe6d6adSToby Isaac   PetscInt           qNc, Nq, q, Np, dE;
275afe6d6adSToby Isaac   PetscInt           dim, dimAux, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, e;
276afe6d6adSToby Isaac   PetscErrorCode     ierr;
277afe6d6adSToby Isaac 
278afe6d6adSToby Isaac   PetscFunctionBegin;
279afe6d6adSToby Isaac   if (!obj_func) PetscFunctionReturn(0);
2804bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
2814bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
2824bee2e38SMatthew G. Knepley   ierr = PetscFEGetFaceQuadrature(fe, &quad);CHKERRQ(ierr);
2834bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
2844bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
2854bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
2864bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
2874bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, NULL, &u_x);CHKERRQ(ierr);
2884bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
289ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetFaceTabulation(ds, &Tf);CHKERRQ(ierr);
2904bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
2914bee2e38SMatthew G. Knepley   if (dsAux) {
2924bee2e38SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
2934bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
2944bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
2954bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
2964bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
2974bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
298afe6d6adSToby Isaac     auxOnBd = dimAux < dim ? PETSC_TRUE : PETSC_FALSE;
299ef0bb6c7SMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
300ef0bb6c7SMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
30101907d53SMatthew G. Knepley     if (Tf[0]->Np != TfAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", Tf[0]->Np, TfAux[0]->Np);
302afe6d6adSToby Isaac   }
303afe6d6adSToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
304afe6d6adSToby Isaac   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
305afe6d6adSToby Isaac   Np = fgeom->numPoints;
306afe6d6adSToby Isaac   dE = fgeom->dimEmbed;
307afe6d6adSToby Isaac   isAffine = fgeom->isAffine;
308afe6d6adSToby Isaac   for (e = 0; e < Ne; ++e) {
3099f209ee4SMatthew G. Knepley     PetscFEGeom    fegeom, cgeom;
310afe6d6adSToby Isaac     const PetscInt face = fgeom->face[e][0]; /* Local face number in cell */
311ea78f98cSLisandro Dalcin     fegeom.n = NULL;
312ea78f98cSLisandro Dalcin     fegeom.v = NULL;
313ea78f98cSLisandro Dalcin     fegeom.J = NULL;
314ea78f98cSLisandro Dalcin     fegeom.detJ = NULL;
31527f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
31627f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
31727f02ce8SMatthew G. Knepley     cgeom.dim       = fgeom->dim;
31827f02ce8SMatthew G. Knepley     cgeom.dimEmbed  = fgeom->dimEmbed;
3194bee2e38SMatthew G. Knepley     if (isAffine) {
3204bee2e38SMatthew G. Knepley       fegeom.v    = x;
3214bee2e38SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
3227132c3f7SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*Np*dE*dE];
3237132c3f7SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*Np*dE*dE];
3247132c3f7SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e*Np];
3257132c3f7SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*Np*dE];
3269f209ee4SMatthew G. Knepley 
3277132c3f7SMatthew G. Knepley       cgeom.J     = &fgeom->suppJ[0][e*Np*dE*dE];
3287132c3f7SMatthew G. Knepley       cgeom.invJ  = &fgeom->suppInvJ[0][e*Np*dE*dE];
3297132c3f7SMatthew G. Knepley       cgeom.detJ  = &fgeom->suppDetJ[0][e*Np];
3304bee2e38SMatthew G. Knepley     }
331afe6d6adSToby Isaac     for (q = 0; q < Nq; ++q) {
332afe6d6adSToby Isaac       PetscScalar integrand;
3334bee2e38SMatthew G. Knepley       PetscReal   w;
334afe6d6adSToby Isaac 
335afe6d6adSToby Isaac       if (isAffine) {
3367132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim-1, fegeom.xi, &fgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*(dim-1)], x);
337afe6d6adSToby Isaac       } else {
3383fe841f2SMatthew G. Knepley         fegeom.v    = &fgeom->v[(e*Np+q)*dE];
3399f209ee4SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
3409f209ee4SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
3414bee2e38SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
3424bee2e38SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
3439f209ee4SMatthew G. Knepley 
3449f209ee4SMatthew G. Knepley         cgeom.J     = &fgeom->suppJ[0][(e*Np+q)*dE*dE];
3459f209ee4SMatthew G. Knepley         cgeom.invJ  = &fgeom->suppInvJ[0][(e*Np+q)*dE*dE];
3469f209ee4SMatthew G. Knepley         cgeom.detJ  = &fgeom->suppDetJ[0][e*Np+q];
347afe6d6adSToby Isaac       }
3484bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
349afe6d6adSToby Isaac       if (debug > 1 && q < Np) {
3504bee2e38SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
351afe6d6adSToby Isaac #ifndef PETSC_USE_COMPLEX
3524bee2e38SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
353afe6d6adSToby Isaac #endif
354afe6d6adSToby Isaac       }
355afe6d6adSToby Isaac       if (debug > 1) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
356ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, face, q, Tf, &cgeom, &coefficients[cOffset], NULL, u, u_x, NULL);CHKERRQ(ierr);
357ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, face, q, TfAux, &cgeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
3584bee2e38SMatthew G. Knepley       obj_func(dim, Nf, NfAux, uOff, uOff_x, u, NULL, u_x, aOff, aOff_x, a, NULL, a_x, 0.0, fegeom.v, fegeom.n, numConstants, constants, &integrand);
3594bee2e38SMatthew G. Knepley       integrand *= w;
360afe6d6adSToby Isaac       integral[e*Nf+field] += integrand;
361afe6d6adSToby Isaac       if (debug > 1) {ierr = PetscPrintf(PETSC_COMM_SELF, "    int: %g %g\n", (double) PetscRealPart(integrand), (double) PetscRealPart(integral[e*Nf+field]));CHKERRQ(ierr);}
362afe6d6adSToby Isaac     }
363afe6d6adSToby Isaac     cOffset    += totDim;
364afe6d6adSToby Isaac     cOffsetAux += totDimAux;
365afe6d6adSToby Isaac   }
366afe6d6adSToby Isaac   PetscFunctionReturn(0);
367afe6d6adSToby Isaac }
368afe6d6adSToby Isaac 
36906ad1575SMatthew G. Knepley PetscErrorCode PetscFEIntegrateResidual_Basic(PetscDS ds, PetscFormKey key, PetscInt Ne, PetscFEGeom *cgeom,
3704bee2e38SMatthew G. Knepley                                               const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[])
37120cf1dd8SToby Isaac {
37220cf1dd8SToby Isaac   const PetscInt     debug = 0;
3736528b96dSMatthew G. Knepley   const PetscInt     field = key.field;
3744bee2e38SMatthew G. Knepley   PetscFE            fe;
3756528b96dSMatthew G. Knepley   PetscWeakForm      wf;
3766528b96dSMatthew G. Knepley   PetscInt           n0,       n1, i;
3776528b96dSMatthew G. Knepley   PetscPointFunc    *f0_func, *f1_func;
37820cf1dd8SToby Isaac   PetscQuadrature    quad;
379ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
3804bee2e38SMatthew G. Knepley   PetscScalar       *f0, *f1, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal;
38120cf1dd8SToby Isaac   const PetscScalar *constants;
38220cf1dd8SToby Isaac   PetscReal         *x;
383ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
384ef0bb6c7SMatthew G. Knepley   PetscInt           dim, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, fOffset, e;
38520cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
386*6587ee25SMatthew G. Knepley   PetscInt           qdim, qNc, Nq, q, dE;
38720cf1dd8SToby Isaac   PetscErrorCode     ierr;
38820cf1dd8SToby Isaac 
38920cf1dd8SToby Isaac   PetscFunctionBegin;
3904bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
3914bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
3924bee2e38SMatthew G. Knepley   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
3934bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
3944bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
3954bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
3964bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
3974bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, field, &fOffset);CHKERRQ(ierr);
3986528b96dSMatthew G. Knepley   ierr = PetscDSGetWeakForm(ds, &wf);CHKERRQ(ierr);
39906ad1575SMatthew G. Knepley   ierr = PetscWeakFormGetResidual(wf, key.label, key.value, key.field, key.part, &n0, &f0_func, &n1, &f1_func);CHKERRQ(ierr);
4006528b96dSMatthew G. Knepley   if (!n0 && !n1) PetscFunctionReturn(0);
4014bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
4024bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
4034bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, &f0, &f1, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
404ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
4054bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
4064bee2e38SMatthew G. Knepley   if (dsAux) {
4074bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
4084bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
4094bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
4104bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
4114bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
412ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);
41301907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
41420cf1dd8SToby Isaac   }
415*6587ee25SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, &qdim, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
4164bee2e38SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
41720cf1dd8SToby Isaac   dE = cgeom->dimEmbed;
418*6587ee25SMatthew G. Knepley   if (cgeom->dim != qdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "FEGeom dim %D != %D quadrature dim", cgeom->dim, qdim);
41920cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
4204bee2e38SMatthew G. Knepley     PetscFEGeom fegeom;
42120cf1dd8SToby Isaac 
422*6587ee25SMatthew G. Knepley     fegeom.v = x; /* workspace */
423ef0bb6c7SMatthew G. Knepley     ierr = PetscArrayzero(f0, Nq*T[field]->Nc);CHKERRQ(ierr);
42427f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f1, Nq*T[field]->Nc*dE);CHKERRQ(ierr);
42520cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
4264bee2e38SMatthew G. Knepley       PetscReal w;
4274bee2e38SMatthew G. Knepley       PetscInt  c, d;
42820cf1dd8SToby Isaac 
429*6587ee25SMatthew G. Knepley       ierr = PetscFEGeomGetPoint(cgeom, e, q, &quadPoints[q*cgeom->dim], &fegeom);CHKERRQ(ierr);
4304bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
431*6587ee25SMatthew G. Knepley       if (debug > 1 && q < cgeom->numPoints) {
4324bee2e38SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
4337be5e748SToby Isaac #if !defined(PETSC_USE_COMPLEX)
4344bee2e38SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
43520cf1dd8SToby Isaac #endif
43620cf1dd8SToby Isaac       }
437*6587ee25SMatthew G. Knepley       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d wt %g\n", q, quadWeights[q]);CHKERRQ(ierr);}
438ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);
439ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, 0, q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
4406528b96dSMatthew G. Knepley       for (i = 0; i < n0; ++i) f0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, numConstants, constants, &f0[q*T[field]->Nc]);
441ef0bb6c7SMatthew G. Knepley       for (c = 0; c < T[field]->Nc; ++c) f0[q*T[field]->Nc+c] *= w;
4426528b96dSMatthew G. Knepley       for (i = 0; i < n1; ++i) f1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, numConstants, constants, &f1[q*T[field]->Nc*dim]);
443ef0bb6c7SMatthew G. Knepley       for (c = 0; c < T[field]->Nc; ++c) for (d = 0; d < dim; ++d) f1[(q*T[field]->Nc+c)*dim+d] *= w;
44420cf1dd8SToby Isaac     }
445*6587ee25SMatthew G. Knepley     ierr = PetscFEUpdateElementVec_Internal(fe, T[field], 0, basisReal, basisDerReal, e, cgeom, f0, f1, &elemVec[cOffset+fOffset]);CHKERRQ(ierr);
44620cf1dd8SToby Isaac     cOffset    += totDim;
44720cf1dd8SToby Isaac     cOffsetAux += totDimAux;
44820cf1dd8SToby Isaac   }
44920cf1dd8SToby Isaac   PetscFunctionReturn(0);
45020cf1dd8SToby Isaac }
45120cf1dd8SToby Isaac 
45206ad1575SMatthew G. Knepley PetscErrorCode PetscFEIntegrateBdResidual_Basic(PetscDS ds, PetscWeakForm wf, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
4534bee2e38SMatthew G. Knepley                                                 const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[])
45420cf1dd8SToby Isaac {
45520cf1dd8SToby Isaac   const PetscInt     debug = 0;
45606d8a0d3SMatthew G. Knepley   const PetscInt     field = key.field;
4574bee2e38SMatthew G. Knepley   PetscFE            fe;
45806d8a0d3SMatthew G. Knepley   PetscInt           n0,       n1, i;
45906d8a0d3SMatthew G. Knepley   PetscBdPointFunc  *f0_func, *f1_func;
46020cf1dd8SToby Isaac   PetscQuadrature    quad;
461ef0bb6c7SMatthew G. Knepley   PetscTabulation   *Tf, *TfAux = NULL;
4624bee2e38SMatthew G. Knepley   PetscScalar       *f0, *f1, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal;
46320cf1dd8SToby Isaac   const PetscScalar *constants;
46420cf1dd8SToby Isaac   PetscReal         *x;
465ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
466ef0bb6c7SMatthew G. Knepley   PetscInt           dim, dimAux, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, fOffset, e, NcI;
467*6587ee25SMatthew G. Knepley   PetscBool          auxOnBd = PETSC_FALSE;
46820cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
469*6587ee25SMatthew G. Knepley   PetscInt           qdim, qNc, Nq, q, dE;
47020cf1dd8SToby Isaac   PetscErrorCode     ierr;
47120cf1dd8SToby Isaac 
47220cf1dd8SToby Isaac   PetscFunctionBegin;
4734bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
4744bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
4754bee2e38SMatthew G. Knepley   ierr = PetscFEGetFaceQuadrature(fe, &quad);CHKERRQ(ierr);
4764bee2e38SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
4774bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
4784bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
4794bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
4804bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, field, &fOffset);CHKERRQ(ierr);
48106ad1575SMatthew G. Knepley   ierr = PetscWeakFormGetBdResidual(wf, key.label, key.value, key.field, key.part, &n0, &f0_func, &n1, &f1_func);CHKERRQ(ierr);
48206d8a0d3SMatthew G. Knepley   if (!n0 && !n1) PetscFunctionReturn(0);
4834bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
4844bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
4854bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, &f0, &f1, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
486ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetFaceTabulation(ds, &Tf);CHKERRQ(ierr);
4874bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
4884bee2e38SMatthew G. Knepley   if (dsAux) {
4894bee2e38SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
4904bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
4914bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
4924bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
4934bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
4944bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
4957be5e748SToby Isaac     auxOnBd = dimAux < dim ? PETSC_TRUE : PETSC_FALSE;
496ef0bb6c7SMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
497ef0bb6c7SMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
49801907d53SMatthew G. Knepley     if (Tf[0]->Np != TfAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", Tf[0]->Np, TfAux[0]->Np);
49920cf1dd8SToby Isaac   }
500ef0bb6c7SMatthew G. Knepley   NcI = Tf[field]->Nc;
501*6587ee25SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, &qdim, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
502afe6d6adSToby Isaac   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
50320cf1dd8SToby Isaac   dE = fgeom->dimEmbed;
504*6587ee25SMatthew G. Knepley   /* TODO FIX THIS */
505*6587ee25SMatthew G. Knepley   fgeom->dim = dim-1;
506*6587ee25SMatthew G. Knepley   if (fgeom->dim != qdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "FEGeom dim %D != %D quadrature dim", fgeom->dim, qdim);
50720cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
5089f209ee4SMatthew G. Knepley     PetscFEGeom    fegeom, cgeom;
50920cf1dd8SToby Isaac     const PetscInt face = fgeom->face[e][0];
5109f209ee4SMatthew G. Knepley 
511*6587ee25SMatthew G. Knepley     fegeom.v = x; /* Workspace */
512580bdb30SBarry Smith     ierr = PetscArrayzero(f0, Nq*NcI);CHKERRQ(ierr);
51327f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f1, Nq*NcI*dE);CHKERRQ(ierr);
51420cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
5154bee2e38SMatthew G. Knepley       PetscReal w;
5164bee2e38SMatthew G. Knepley       PetscInt  c, d;
5174bee2e38SMatthew G. Knepley 
518*6587ee25SMatthew G. Knepley       ierr = PetscFEGeomGetPoint(fgeom, e, q, &quadPoints[q*fgeom->dim], &fegeom);CHKERRQ(ierr);
519*6587ee25SMatthew G. Knepley       ierr = PetscFEGeomGetCellPoint(fgeom, e, q, &cgeom);CHKERRQ(ierr);
5204bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
52162bd480fSMatthew G. Knepley       if (debug > 1) {
522*6587ee25SMatthew G. Knepley         if ((fgeom->isAffine && q == 0) || (!fgeom->isAffine)) {
5234bee2e38SMatthew G. Knepley           ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
5247be5e748SToby Isaac #if !defined(PETSC_USE_COMPLEX)
5254bee2e38SMatthew G. Knepley           ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
52662bd480fSMatthew G. Knepley           ierr = DMPrintCellVector(e, "n", dim, fegeom.n);CHKERRQ(ierr);
52720cf1dd8SToby Isaac #endif
52820cf1dd8SToby Isaac         }
52962bd480fSMatthew G. Knepley       }
530ef0bb6c7SMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, face, q, Tf, &cgeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);
531ef0bb6c7SMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, auxOnBd ? 0 : face, q, TfAux, &cgeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
53206d8a0d3SMatthew G. Knepley       for (i = 0; i < n0; ++i) f0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f0[q*NcI]);
5334bee2e38SMatthew G. Knepley       for (c = 0; c < NcI; ++c) f0[q*NcI+c] *= w;
53406d8a0d3SMatthew G. Knepley       for (i = 0; i < n1; ++i) f1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f1[q*NcI*dim]);
5354bee2e38SMatthew G. Knepley       for (c = 0; c < NcI; ++c) for (d = 0; d < dim; ++d) f1[(q*NcI+c)*dim+d] *= w;
53662bd480fSMatthew G. Knepley       if (debug) {
53762bd480fSMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %D quad point %d\n", e, q);CHKERRQ(ierr);
53862bd480fSMatthew G. Knepley         for (c = 0; c < NcI; ++c) {
53962bd480fSMatthew G. Knepley           if (n0) {ierr = PetscPrintf(PETSC_COMM_SELF, "  f0[%D] %g\n", c, f0[q*NcI+c]);CHKERRQ(ierr);}
54062bd480fSMatthew G. Knepley           if (n1) {
54162bd480fSMatthew G. Knepley             for (d = 0; d < dim; ++d) {ierr = PetscPrintf(PETSC_COMM_SELF, "  f1[%D,%D] %g", c, d, f1[(q*NcI + c)*dim + d]);CHKERRQ(ierr);}
54262bd480fSMatthew G. Knepley             ierr = PetscPrintf(PETSC_COMM_SELF, "\n");CHKERRQ(ierr);
54362bd480fSMatthew G. Knepley           }
54462bd480fSMatthew G. Knepley         }
54562bd480fSMatthew G. Knepley       }
54620cf1dd8SToby Isaac     }
547*6587ee25SMatthew G. Knepley     ierr = PetscFEUpdateElementVec_Internal(fe, Tf[field], face, basisReal, basisDerReal, e, fgeom, f0, f1, &elemVec[cOffset+fOffset]);CHKERRQ(ierr);
54820cf1dd8SToby Isaac     cOffset    += totDim;
54920cf1dd8SToby Isaac     cOffsetAux += totDimAux;
55020cf1dd8SToby Isaac   }
55120cf1dd8SToby Isaac   PetscFunctionReturn(0);
55220cf1dd8SToby Isaac }
55320cf1dd8SToby Isaac 
55427f02ce8SMatthew G. Knepley /*
55527f02ce8SMatthew G. Knepley   BdIntegral: Operates completely in the embedding dimension. The trick is to have special "face quadrature" so we only integrate over the face, but
55627f02ce8SMatthew G. Knepley               all transforms operate in the full space and are square.
55727f02ce8SMatthew G. Knepley 
55827f02ce8SMatthew G. Knepley   HybridIntegral: The discretization is lower dimensional. That means the transforms are non-square.
55927f02ce8SMatthew G. Knepley     1) DMPlexGetCellFields() retrieves from the hybrid cell, so it gets fields from both faces
56027f02ce8SMatthew G. Knepley     2) We need to assume that the orientation is 0 for both
56127f02ce8SMatthew G. Knepley     3) TODO We need to use a non-square Jacobian for the derivative maps, meaning the embedding dimension has to go to EvaluateFieldJets() and UpdateElementVec()
56227f02ce8SMatthew G. Knepley */
56306ad1575SMatthew G. Knepley static PetscErrorCode PetscFEIntegrateHybridResidual_Basic(PetscDS ds, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
56427f02ce8SMatthew G. Knepley                                                            const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[])
56527f02ce8SMatthew G. Knepley {
56627f02ce8SMatthew G. Knepley   const PetscInt     debug = 0;
5676528b96dSMatthew G. Knepley   const PetscInt     field = key.field;
56827f02ce8SMatthew G. Knepley   PetscFE            fe;
5696528b96dSMatthew G. Knepley   PetscWeakForm      wf;
5706528b96dSMatthew G. Knepley   PetscInt           n0,      n1, i;
5716528b96dSMatthew G. Knepley   PetscBdPointFunc  *f0_func, *f1_func;
57227f02ce8SMatthew G. Knepley   PetscQuadrature    quad;
573665f567fSMatthew G. Knepley   PetscTabulation   *Tf, *TfAux = NULL;
57427f02ce8SMatthew G. Knepley   PetscScalar       *f0, *f1, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal;
57527f02ce8SMatthew G. Knepley   const PetscScalar *constants;
57627f02ce8SMatthew G. Knepley   PetscReal         *x;
577665f567fSMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
578665f567fSMatthew G. Knepley   PetscInt           dim, dimAux, numConstants, Nf, NfAux = 0, totDim, totDimAux = 0, cOffset = 0, cOffsetAux = 0, fOffset, e, NcI, NcS;
579*6587ee25SMatthew G. Knepley   PetscBool          isCohesiveField, auxOnBd = PETSC_FALSE;
58027f02ce8SMatthew G. Knepley   const PetscReal   *quadPoints, *quadWeights;
581*6587ee25SMatthew G. Knepley   PetscInt           qdim, qNc, Nq, q, dE;
58227f02ce8SMatthew G. Knepley   PetscErrorCode     ierr;
58327f02ce8SMatthew G. Knepley 
58427f02ce8SMatthew G. Knepley   PetscFunctionBegin;
58527f02ce8SMatthew G. Knepley   /* Hybrid discretization is posed directly on faces */
58627f02ce8SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, field, (PetscObject *) &fe);CHKERRQ(ierr);
58727f02ce8SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(fe, &dim);CHKERRQ(ierr);
58827f02ce8SMatthew G. Knepley   ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
58927f02ce8SMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
59027f02ce8SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
59127f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
59227f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
59327f02ce8SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, field, &fOffset);CHKERRQ(ierr);
5946528b96dSMatthew G. Knepley   ierr = PetscDSGetWeakForm(ds, &wf);CHKERRQ(ierr);
59506ad1575SMatthew G. Knepley   ierr = PetscWeakFormGetBdResidual(wf, key.label, key.value, key.field, key.part, &n0, &f0_func, &n1, &f1_func);CHKERRQ(ierr);
5966528b96dSMatthew G. Knepley   if (!n0 && !n1) PetscFunctionReturn(0);
59727f02ce8SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
59827f02ce8SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, NULL, NULL);CHKERRQ(ierr);
59927f02ce8SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, &f0, &f1, NULL, NULL, NULL, NULL);CHKERRQ(ierr);
60027f02ce8SMatthew G. Knepley   /* NOTE This is a bulk tabulation because the DS is a face discretization */
601665f567fSMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &Tf);CHKERRQ(ierr);
60227f02ce8SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
60327f02ce8SMatthew G. Knepley   if (dsAux) {
60427f02ce8SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
60527f02ce8SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
60627f02ce8SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
60727f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
60827f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
60927f02ce8SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
61001907d53SMatthew G. Knepley     auxOnBd = dimAux == dim ? PETSC_TRUE : PETSC_FALSE;
611665f567fSMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
612665f567fSMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TfAux);CHKERRQ(ierr);}
61301907d53SMatthew G. Knepley     if (Tf[0]->Np != TfAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", Tf[0]->Np, TfAux[0]->Np);
61427f02ce8SMatthew G. Knepley   }
61527f02ce8SMatthew G. Knepley   isCohesiveField = field == Nf-1 ? PETSC_TRUE : PETSC_FALSE;
616665f567fSMatthew G. Knepley   NcI = Tf[field]->Nc;
61727f02ce8SMatthew G. Knepley   NcS = isCohesiveField ? NcI : 2*NcI;
618*6587ee25SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, &qdim, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
61927f02ce8SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
62027f02ce8SMatthew G. Knepley   dE = fgeom->dimEmbed;
621*6587ee25SMatthew G. Knepley   if (fgeom->dim != qdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "FEGeom dim %D != %D quadrature dim", fgeom->dim, qdim);
62227f02ce8SMatthew G. Knepley   for (e = 0; e < Ne; ++e) {
62327f02ce8SMatthew G. Knepley     PetscFEGeom    fegeom;
62427f02ce8SMatthew G. Knepley     const PetscInt face = fgeom->face[e][0];
62527f02ce8SMatthew G. Knepley 
626*6587ee25SMatthew G. Knepley     fegeom.v = x; /* Workspace */
62727f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f0, Nq*NcS);CHKERRQ(ierr);
62827f02ce8SMatthew G. Knepley     ierr = PetscArrayzero(f1, Nq*NcS*dE);CHKERRQ(ierr);
62927f02ce8SMatthew G. Knepley     for (q = 0; q < Nq; ++q) {
63027f02ce8SMatthew G. Knepley       PetscReal w;
63127f02ce8SMatthew G. Knepley       PetscInt  c, d;
63227f02ce8SMatthew G. Knepley 
633*6587ee25SMatthew G. Knepley       ierr = PetscFEGeomGetPoint(fgeom, e, q, &quadPoints[q*fgeom->dim], &fegeom);CHKERRQ(ierr);
63427f02ce8SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
635*6587ee25SMatthew G. Knepley       if (debug > 1 && q < fgeom->numPoints) {
63627f02ce8SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
63727f02ce8SMatthew G. Knepley #if !defined(PETSC_USE_COMPLEX)
63827f02ce8SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dE, fegeom.invJ);CHKERRQ(ierr);
63927f02ce8SMatthew G. Knepley #endif
64027f02ce8SMatthew G. Knepley       }
64127f02ce8SMatthew G. Knepley       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
64227f02ce8SMatthew G. Knepley       /* TODO Is this cell or face quadrature, meaning should we use 'q' or 'face*Nq+q' */
643665f567fSMatthew G. Knepley       ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(ds, Nf, 0, q, Tf, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);
644665f567fSMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(dsAux, NfAux, 0, auxOnBd ? q : face*Nq+q, TfAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
6456528b96dSMatthew G. Knepley       for (i = 0; i < n0; ++i) f0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f0[q*NcS]);
64627f02ce8SMatthew G. Knepley       for (c = 0; c < NcS; ++c) f0[q*NcS+c] *= w;
6476528b96dSMatthew G. Knepley       for (i = 0; i < n1; ++i) f1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, fegeom.v, fegeom.n, numConstants, constants, &f1[q*NcS*dim]);
64827f02ce8SMatthew G. Knepley       for (c = 0; c < NcS; ++c) for (d = 0; d < dim; ++d) f1[(q*NcS+c)*dim+d] *= w;
64927f02ce8SMatthew G. Knepley     }
650*6587ee25SMatthew G. Knepley     if (isCohesiveField) {PetscFEUpdateElementVec_Internal(fe, Tf[field], 0, basisReal, basisDerReal, e, fgeom, f0, f1, &elemVec[cOffset+fOffset*2]);}
651*6587ee25SMatthew G. Knepley     else                 {PetscFEUpdateElementVec_Hybrid_Internal(fe, Tf[field], 0, basisReal, basisDerReal, fgeom, f0, f1, &elemVec[cOffset+fOffset*2]);}
65227f02ce8SMatthew G. Knepley     cOffset    += totDim;
65327f02ce8SMatthew G. Knepley     cOffsetAux += totDimAux;
65427f02ce8SMatthew G. Knepley   }
65527f02ce8SMatthew G. Knepley   PetscFunctionReturn(0);
65627f02ce8SMatthew G. Knepley }
65727f02ce8SMatthew G. Knepley 
65806ad1575SMatthew G. Knepley PetscErrorCode PetscFEIntegrateJacobian_Basic(PetscDS ds, PetscFEJacobianType jtype, PetscFormKey key, PetscInt Ne, PetscFEGeom *cgeom,
6594bee2e38SMatthew G. Knepley                                               const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[])
66020cf1dd8SToby Isaac {
66120cf1dd8SToby Isaac   const PetscInt     debug      = 0;
6624bee2e38SMatthew G. Knepley   PetscFE            feI, feJ;
6636528b96dSMatthew G. Knepley   PetscWeakForm      wf;
6646528b96dSMatthew G. Knepley   PetscPointJac     *g0_func, *g1_func, *g2_func, *g3_func;
6656528b96dSMatthew G. Knepley   PetscInt           n0, n1, n2, n3, i;
66620cf1dd8SToby Isaac   PetscInt           cOffset    = 0; /* Offset into coefficients[] for element e */
66720cf1dd8SToby Isaac   PetscInt           cOffsetAux = 0; /* Offset into coefficientsAux[] for element e */
66820cf1dd8SToby Isaac   PetscInt           eOffset    = 0; /* Offset into elemMat[] for element e */
66920cf1dd8SToby Isaac   PetscInt           offsetI    = 0; /* Offset into an element vector for fieldI */
67020cf1dd8SToby Isaac   PetscInt           offsetJ    = 0; /* Offset into an element vector for fieldJ */
67120cf1dd8SToby Isaac   PetscQuadrature    quad;
672ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
6734bee2e38SMatthew G. Knepley   PetscScalar       *g0, *g1, *g2, *g3, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal, *testReal, *testDerReal;
67420cf1dd8SToby Isaac   const PetscScalar *constants;
67520cf1dd8SToby Isaac   PetscReal         *x;
676ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
677ef0bb6c7SMatthew G. Knepley   PetscInt           NcI = 0, NcJ = 0;
6786528b96dSMatthew G. Knepley   PetscInt           dim, numConstants, Nf, fieldI, fieldJ, NfAux = 0, totDim, totDimAux = 0, e;
67920cf1dd8SToby Isaac   PetscInt           dE, Np;
68020cf1dd8SToby Isaac   PetscBool          isAffine;
68120cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
68220cf1dd8SToby Isaac   PetscInt           qNc, Nq, q;
68320cf1dd8SToby Isaac   PetscErrorCode     ierr;
68420cf1dd8SToby Isaac 
68520cf1dd8SToby Isaac   PetscFunctionBegin;
6866528b96dSMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
6876528b96dSMatthew G. Knepley   fieldI = key.field / Nf;
6886528b96dSMatthew G. Knepley   fieldJ = key.field % Nf;
6894bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldI, (PetscObject *) &feI);CHKERRQ(ierr);
6904bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldJ, (PetscObject *) &feJ);CHKERRQ(ierr);
6914bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(feI, &dim);CHKERRQ(ierr);
6924bee2e38SMatthew G. Knepley   ierr = PetscFEGetQuadrature(feI, &quad);CHKERRQ(ierr);
6934bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
6944bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
6954bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
6966528b96dSMatthew G. Knepley   ierr = PetscDSGetWeakForm(ds, &wf);CHKERRQ(ierr);
69720cf1dd8SToby Isaac   switch(jtype) {
69806ad1575SMatthew G. Knepley   case PETSCFE_JACOBIAN_DYN: ierr = PetscWeakFormGetDynamicJacobian(wf, key.label, key.value, fieldI, fieldJ, key.part, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
69906ad1575SMatthew G. Knepley   case PETSCFE_JACOBIAN_PRE: ierr = PetscWeakFormGetJacobianPreconditioner(wf, key.label, key.value, fieldI, fieldJ, key.part, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
70006ad1575SMatthew G. Knepley   case PETSCFE_JACOBIAN:     ierr = PetscWeakFormGetJacobian(wf, key.label, key.value, fieldI, fieldJ, key.part, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
70120cf1dd8SToby Isaac   }
7026528b96dSMatthew G. Knepley   if (!n0 && !n1 && !n2 && !n3) PetscFunctionReturn(0);
7034bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
7044bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, &testReal, &testDerReal);CHKERRQ(ierr);
7054bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, NULL, NULL, &g0, &g1, &g2, &g3);CHKERRQ(ierr);
706ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
7074bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldI, &offsetI);CHKERRQ(ierr);
7084bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldJ, &offsetJ);CHKERRQ(ierr);
7094bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
7104bee2e38SMatthew G. Knepley   if (dsAux) {
7114bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
7124bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
7134bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
7144bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
7154bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
716ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);
71701907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
71820cf1dd8SToby Isaac   }
71927f02ce8SMatthew G. Knepley   NcI = T[fieldI]->Nc;
72027f02ce8SMatthew G. Knepley   NcJ = T[fieldJ]->Nc;
7214bee2e38SMatthew G. Knepley   Np  = cgeom->numPoints;
7224bee2e38SMatthew G. Knepley   dE  = cgeom->dimEmbed;
7234bee2e38SMatthew G. Knepley   isAffine = cgeom->isAffine;
72427f02ce8SMatthew G. Knepley   /* Initialize here in case the function is not defined */
72527f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
72627f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
72727f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
72827f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
72927f02ce8SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
73027f02ce8SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
7314bee2e38SMatthew G. Knepley   for (e = 0; e < Ne; ++e) {
7324bee2e38SMatthew G. Knepley     PetscFEGeom fegeom;
7334bee2e38SMatthew G. Knepley 
73427f02ce8SMatthew G. Knepley     fegeom.dim      = cgeom->dim;
73527f02ce8SMatthew G. Knepley     fegeom.dimEmbed = cgeom->dimEmbed;
7364bee2e38SMatthew G. Knepley     if (isAffine) {
7374bee2e38SMatthew G. Knepley       fegeom.v    = x;
7384bee2e38SMatthew G. Knepley       fegeom.xi   = cgeom->xi;
7397132c3f7SMatthew G. Knepley       fegeom.J    = &cgeom->J[e*Np*dE*dE];
7407132c3f7SMatthew G. Knepley       fegeom.invJ = &cgeom->invJ[e*Np*dE*dE];
7417132c3f7SMatthew G. Knepley       fegeom.detJ = &cgeom->detJ[e*Np];
7424bee2e38SMatthew G. Knepley     }
74320cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
74420cf1dd8SToby Isaac       PetscReal w;
7454bee2e38SMatthew G. Knepley       PetscInt  c;
74620cf1dd8SToby Isaac 
74720cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
74820cf1dd8SToby Isaac       if (isAffine) {
7497132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &cgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*dim], x);
75020cf1dd8SToby Isaac       } else {
7514bee2e38SMatthew G. Knepley         fegeom.v    = &cgeom->v[(e*Np+q)*dE];
7524bee2e38SMatthew G. Knepley         fegeom.J    = &cgeom->J[(e*Np+q)*dE*dE];
7534bee2e38SMatthew G. Knepley         fegeom.invJ = &cgeom->invJ[(e*Np+q)*dE*dE];
7544bee2e38SMatthew G. Knepley         fegeom.detJ = &cgeom->detJ[e*Np+q];
75520cf1dd8SToby Isaac       }
7564bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
757ef0bb6c7SMatthew G. Knepley       if (coefficients) {ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);}
758ef0bb6c7SMatthew G. Knepley       if (dsAux)        {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, 0, q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
759ea672e62SMatthew G. Knepley       if (n0) {
760580bdb30SBarry Smith         ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
7616528b96dSMatthew G. Knepley         for (i = 0; i < n0; ++i) g0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g0);
76220cf1dd8SToby Isaac         for (c = 0; c < NcI*NcJ; ++c) g0[c] *= w;
76320cf1dd8SToby Isaac       }
764ea672e62SMatthew G. Knepley       if (n1) {
76527f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
7666528b96dSMatthew G. Knepley         for (i = 0; i < n1; ++i) g1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g1);
7674bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g1[c] *= w;
76820cf1dd8SToby Isaac       }
769ea672e62SMatthew G. Knepley       if (n2) {
77027f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
7716528b96dSMatthew G. Knepley         for (i = 0; i < n2; ++i) g2_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g2);
7724bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g2[c] *= w;
77320cf1dd8SToby Isaac       }
774ea672e62SMatthew G. Knepley       if (n3) {
77527f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
7766528b96dSMatthew G. Knepley         for (i = 0; i < n3; ++i) g3_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, numConstants, constants, g3);
7774bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim*dim; ++c) g3[c] *= w;
77820cf1dd8SToby Isaac       }
77920cf1dd8SToby Isaac 
780ef0bb6c7SMatthew G. Knepley       ierr = PetscFEUpdateElementMat_Internal(feI, feJ, 0, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &fegeom, g0, g1, g2, g3, eOffset, totDim, offsetI, offsetJ, elemMat);CHKERRQ(ierr);
78120cf1dd8SToby Isaac     }
78220cf1dd8SToby Isaac     if (debug > 1) {
78320cf1dd8SToby Isaac       PetscInt fc, f, gc, g;
78420cf1dd8SToby Isaac 
78520cf1dd8SToby Isaac       ierr = PetscPrintf(PETSC_COMM_SELF, "Element matrix for fields %d and %d\n", fieldI, fieldJ);CHKERRQ(ierr);
786ef0bb6c7SMatthew G. Knepley       for (fc = 0; fc < T[fieldI]->Nc; ++fc) {
787ef0bb6c7SMatthew G. Knepley         for (f = 0; f < T[fieldI]->Nb; ++f) {
788ef0bb6c7SMatthew G. Knepley           const PetscInt i = offsetI + f*T[fieldI]->Nc+fc;
789ef0bb6c7SMatthew G. Knepley           for (gc = 0; gc < T[fieldJ]->Nc; ++gc) {
790ef0bb6c7SMatthew G. Knepley             for (g = 0; g < T[fieldJ]->Nb; ++g) {
791ef0bb6c7SMatthew G. Knepley               const PetscInt j = offsetJ + g*T[fieldJ]->Nc+gc;
79220cf1dd8SToby Isaac               ierr = PetscPrintf(PETSC_COMM_SELF, "    elemMat[%d,%d,%d,%d]: %g\n", f, fc, g, gc, PetscRealPart(elemMat[eOffset+i*totDim+j]));CHKERRQ(ierr);
79320cf1dd8SToby Isaac             }
79420cf1dd8SToby Isaac           }
79520cf1dd8SToby Isaac           ierr = PetscPrintf(PETSC_COMM_SELF, "\n");CHKERRQ(ierr);
79620cf1dd8SToby Isaac         }
79720cf1dd8SToby Isaac       }
79820cf1dd8SToby Isaac     }
79920cf1dd8SToby Isaac     cOffset    += totDim;
80020cf1dd8SToby Isaac     cOffsetAux += totDimAux;
80120cf1dd8SToby Isaac     eOffset    += PetscSqr(totDim);
80220cf1dd8SToby Isaac   }
80320cf1dd8SToby Isaac   PetscFunctionReturn(0);
80420cf1dd8SToby Isaac }
80520cf1dd8SToby Isaac 
80606ad1575SMatthew G. Knepley static PetscErrorCode PetscFEIntegrateBdJacobian_Basic(PetscDS ds, PetscWeakForm wf, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
8074bee2e38SMatthew G. Knepley                                                        const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[])
80820cf1dd8SToby Isaac {
80920cf1dd8SToby Isaac   const PetscInt     debug      = 0;
8104bee2e38SMatthew G. Knepley   PetscFE            feI, feJ;
81145480ffeSMatthew G. Knepley   PetscBdPointJac   *g0_func, *g1_func, *g2_func, *g3_func;
81245480ffeSMatthew G. Knepley   PetscInt           n0,       n1,       n2,       n3, i;
81320cf1dd8SToby Isaac   PetscInt           cOffset    = 0; /* Offset into coefficients[] for element e */
81420cf1dd8SToby Isaac   PetscInt           cOffsetAux = 0; /* Offset into coefficientsAux[] for element e */
81520cf1dd8SToby Isaac   PetscInt           eOffset    = 0; /* Offset into elemMat[] for element e */
81620cf1dd8SToby Isaac   PetscInt           offsetI    = 0; /* Offset into an element vector for fieldI */
81720cf1dd8SToby Isaac   PetscInt           offsetJ    = 0; /* Offset into an element vector for fieldJ */
81820cf1dd8SToby Isaac   PetscQuadrature    quad;
819ef0bb6c7SMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
8204bee2e38SMatthew G. Knepley   PetscScalar       *g0, *g1, *g2, *g3, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal, *testReal, *testDerReal;
82120cf1dd8SToby Isaac   const PetscScalar *constants;
82220cf1dd8SToby Isaac   PetscReal         *x;
823ef0bb6c7SMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
824ef0bb6c7SMatthew G. Knepley   PetscInt           NcI = 0, NcJ = 0;
82545480ffeSMatthew G. Knepley   PetscInt           dim, numConstants, Nf, fieldI, fieldJ, NfAux = 0, totDim, totDimAux = 0, e;
82620cf1dd8SToby Isaac   PetscBool          isAffine;
82720cf1dd8SToby Isaac   const PetscReal   *quadPoints, *quadWeights;
82820cf1dd8SToby Isaac   PetscInt           qNc, Nq, q, Np, dE;
82920cf1dd8SToby Isaac   PetscErrorCode     ierr;
83020cf1dd8SToby Isaac 
83120cf1dd8SToby Isaac   PetscFunctionBegin;
83245480ffeSMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
83345480ffeSMatthew G. Knepley   fieldI = key.field / Nf;
83445480ffeSMatthew G. Knepley   fieldJ = key.field % Nf;
8354bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldI, (PetscObject *) &feI);CHKERRQ(ierr);
8364bee2e38SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldJ, (PetscObject *) &feJ);CHKERRQ(ierr);
8374bee2e38SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(feI, &dim);CHKERRQ(ierr);
8384bee2e38SMatthew G. Knepley   ierr = PetscFEGetFaceQuadrature(feI, &quad);CHKERRQ(ierr);
8394bee2e38SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
8404bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
8414bee2e38SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
8424bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldI, &offsetI);CHKERRQ(ierr);
8434bee2e38SMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldJ, &offsetJ);CHKERRQ(ierr);
84406ad1575SMatthew G. Knepley   ierr = PetscWeakFormGetBdJacobian(wf, key.label, key.value, fieldI, fieldJ, key.part, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);
84545480ffeSMatthew G. Knepley   if (!n0 && !n1 && !n2 && !n3) PetscFunctionReturn(0);
8464bee2e38SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
8474bee2e38SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, &testReal, &testDerReal);CHKERRQ(ierr);
8484bee2e38SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, NULL, NULL, &g0, &g1, &g2, &g3);CHKERRQ(ierr);
849ef0bb6c7SMatthew G. Knepley   ierr = PetscDSGetFaceTabulation(ds, &T);CHKERRQ(ierr);
8504bee2e38SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
8514bee2e38SMatthew G. Knepley   if (dsAux) {
8524bee2e38SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
8534bee2e38SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
8544bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
8554bee2e38SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
8564bee2e38SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
857ef0bb6c7SMatthew G. Knepley     ierr = PetscDSGetFaceTabulation(dsAux, &TAux);CHKERRQ(ierr);
85820cf1dd8SToby Isaac   }
859ef0bb6c7SMatthew G. Knepley   NcI = T[fieldI]->Nc, NcJ = T[fieldJ]->Nc;
86020cf1dd8SToby Isaac   Np = fgeom->numPoints;
86120cf1dd8SToby Isaac   dE = fgeom->dimEmbed;
86220cf1dd8SToby Isaac   isAffine = fgeom->isAffine;
86327f02ce8SMatthew G. Knepley   /* Initialize here in case the function is not defined */
86431f073d7SMatthew G. Knepley   ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
86527f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
86627f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
86727f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
86827f02ce8SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
86927f02ce8SMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
87020cf1dd8SToby Isaac   for (e = 0; e < Ne; ++e) {
8719f209ee4SMatthew G. Knepley     PetscFEGeom    fegeom, cgeom;
87220cf1dd8SToby Isaac     const PetscInt face = fgeom->face[e][0];
873ea78f98cSLisandro Dalcin     fegeom.n = NULL;
874ea78f98cSLisandro Dalcin     fegeom.v = NULL;
875ea78f98cSLisandro Dalcin     fegeom.J = NULL;
876ea78f98cSLisandro Dalcin     fegeom.detJ = NULL;
87727f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
87827f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
87927f02ce8SMatthew G. Knepley     cgeom.dim       = fgeom->dim;
88027f02ce8SMatthew G. Knepley     cgeom.dimEmbed  = fgeom->dimEmbed;
8814bee2e38SMatthew G. Knepley     if (isAffine) {
8824bee2e38SMatthew G. Knepley       fegeom.v    = x;
8834bee2e38SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
8847132c3f7SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*Np*dE*dE];
8857132c3f7SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*Np*dE*dE];
8867132c3f7SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e*Np];
8877132c3f7SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*Np*dE];
8889f209ee4SMatthew G. Knepley 
8897132c3f7SMatthew G. Knepley       cgeom.J     = &fgeom->suppJ[0][e*Np*dE*dE];
8907132c3f7SMatthew G. Knepley       cgeom.invJ  = &fgeom->suppInvJ[0][e*Np*dE*dE];
8917132c3f7SMatthew G. Knepley       cgeom.detJ  = &fgeom->suppDetJ[0][e*Np];
8924bee2e38SMatthew G. Knepley     }
89320cf1dd8SToby Isaac     for (q = 0; q < Nq; ++q) {
89420cf1dd8SToby Isaac       PetscReal w;
8954bee2e38SMatthew G. Knepley       PetscInt  c;
89620cf1dd8SToby Isaac 
89720cf1dd8SToby Isaac       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
89820cf1dd8SToby Isaac       if (isAffine) {
8997132c3f7SMatthew G. Knepley         CoordinatesRefToReal(dE, dim-1, fegeom.xi, &fgeom->v[e*Np*dE], fegeom.J, &quadPoints[q*(dim-1)], x);
90020cf1dd8SToby Isaac       } else {
9013fe841f2SMatthew G. Knepley         fegeom.v    = &fgeom->v[(e*Np+q)*dE];
9029f209ee4SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
9039f209ee4SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
9044bee2e38SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
9054bee2e38SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
9069f209ee4SMatthew G. Knepley 
9079f209ee4SMatthew G. Knepley         cgeom.J     = &fgeom->suppJ[0][(e*Np+q)*dE*dE];
9089f209ee4SMatthew G. Knepley         cgeom.invJ  = &fgeom->suppInvJ[0][(e*Np+q)*dE*dE];
9099f209ee4SMatthew G. Knepley         cgeom.detJ  = &fgeom->suppDetJ[0][e*Np+q];
91020cf1dd8SToby Isaac       }
9114bee2e38SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
912ef0bb6c7SMatthew G. Knepley       if (coefficients) {ierr = PetscFEEvaluateFieldJets_Internal(ds, Nf, face, q, T, &cgeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);}
913ef0bb6c7SMatthew G. Knepley       if (dsAux)        {ierr = PetscFEEvaluateFieldJets_Internal(dsAux, NfAux, face, q, TAux, &cgeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
914ea672e62SMatthew G. Knepley       if (n0) {
915580bdb30SBarry Smith         ierr = PetscArrayzero(g0, NcI*NcJ);CHKERRQ(ierr);
91645480ffeSMatthew G. Knepley         for (i = 0; i < n0; ++i) g0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g0);
91720cf1dd8SToby Isaac         for (c = 0; c < NcI*NcJ; ++c) g0[c] *= w;
91820cf1dd8SToby Isaac       }
919ea672e62SMatthew G. Knepley       if (n1) {
92027f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g1, NcI*NcJ*dE);CHKERRQ(ierr);
92145480ffeSMatthew G. Knepley         for (i = 0; i < n1; ++i) g1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g1);
9224bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g1[c] *= w;
92320cf1dd8SToby Isaac       }
924ea672e62SMatthew G. Knepley       if (n2) {
92527f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g2, NcI*NcJ*dE);CHKERRQ(ierr);
92645480ffeSMatthew G. Knepley         for (i = 0; i < n2; ++i) g2_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g2);
9274bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim; ++c) g2[c] *= w;
92820cf1dd8SToby Isaac       }
929ea672e62SMatthew G. Knepley       if (n3) {
93027f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g3, NcI*NcJ*dE*dE);CHKERRQ(ierr);
93145480ffeSMatthew G. Knepley         for (i = 0; i < n3; ++i) g3_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g3);
9324bee2e38SMatthew G. Knepley         for (c = 0; c < NcI*NcJ*dim*dim; ++c) g3[c] *= w;
93320cf1dd8SToby Isaac       }
93420cf1dd8SToby Isaac 
935ef0bb6c7SMatthew G. Knepley       ierr = PetscFEUpdateElementMat_Internal(feI, feJ, face, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &cgeom, g0, g1, g2, g3, eOffset, totDim, offsetI, offsetJ, elemMat);CHKERRQ(ierr);
93620cf1dd8SToby Isaac     }
93720cf1dd8SToby Isaac     if (debug > 1) {
93820cf1dd8SToby Isaac       PetscInt fc, f, gc, g;
93920cf1dd8SToby Isaac 
94020cf1dd8SToby Isaac       ierr = PetscPrintf(PETSC_COMM_SELF, "Element matrix for fields %d and %d\n", fieldI, fieldJ);CHKERRQ(ierr);
941ef0bb6c7SMatthew G. Knepley       for (fc = 0; fc < T[fieldI]->Nc; ++fc) {
942ef0bb6c7SMatthew G. Knepley         for (f = 0; f < T[fieldI]->Nb; ++f) {
943ef0bb6c7SMatthew G. Knepley           const PetscInt i = offsetI + f*T[fieldI]->Nc+fc;
944ef0bb6c7SMatthew G. Knepley           for (gc = 0; gc < T[fieldJ]->Nc; ++gc) {
945ef0bb6c7SMatthew G. Knepley             for (g = 0; g < T[fieldJ]->Nb; ++g) {
946ef0bb6c7SMatthew G. Knepley               const PetscInt j = offsetJ + g*T[fieldJ]->Nc+gc;
94720cf1dd8SToby Isaac               ierr = PetscPrintf(PETSC_COMM_SELF, "    elemMat[%d,%d,%d,%d]: %g\n", f, fc, g, gc, PetscRealPart(elemMat[eOffset+i*totDim+j]));CHKERRQ(ierr);
94820cf1dd8SToby Isaac             }
94920cf1dd8SToby Isaac           }
95020cf1dd8SToby Isaac           ierr = PetscPrintf(PETSC_COMM_SELF, "\n");CHKERRQ(ierr);
95120cf1dd8SToby Isaac         }
95220cf1dd8SToby Isaac       }
95320cf1dd8SToby Isaac     }
95420cf1dd8SToby Isaac     cOffset    += totDim;
95520cf1dd8SToby Isaac     cOffsetAux += totDimAux;
95620cf1dd8SToby Isaac     eOffset    += PetscSqr(totDim);
95720cf1dd8SToby Isaac   }
95820cf1dd8SToby Isaac   PetscFunctionReturn(0);
95920cf1dd8SToby Isaac }
96020cf1dd8SToby Isaac 
96106ad1575SMatthew G. Knepley PetscErrorCode PetscFEIntegrateHybridJacobian_Basic(PetscDS ds, PetscFEJacobianType jtype, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom,
96227f02ce8SMatthew G. Knepley                                               const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS dsAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[])
96327f02ce8SMatthew G. Knepley {
96427f02ce8SMatthew G. Knepley   const PetscInt     debug      = 0;
96527f02ce8SMatthew G. Knepley   PetscFE            feI, feJ;
966148442b3SMatthew G. Knepley   PetscWeakForm      wf;
967148442b3SMatthew G. Knepley   PetscBdPointJac   *g0_func, *g1_func, *g2_func, *g3_func;
968148442b3SMatthew G. Knepley   PetscInt           n0,       n1,       n2,       n3, i;
96927f02ce8SMatthew G. Knepley   PetscInt           cOffset    = 0; /* Offset into coefficients[] for element e */
97027f02ce8SMatthew G. Knepley   PetscInt           cOffsetAux = 0; /* Offset into coefficientsAux[] for element e */
97127f02ce8SMatthew G. Knepley   PetscInt           eOffset    = 0; /* Offset into elemMat[] for element e */
97227f02ce8SMatthew G. Knepley   PetscInt           offsetI    = 0; /* Offset into an element vector for fieldI */
97327f02ce8SMatthew G. Knepley   PetscInt           offsetJ    = 0; /* Offset into an element vector for fieldJ */
974665f567fSMatthew G. Knepley   PetscQuadrature    quad;
975665f567fSMatthew G. Knepley   PetscTabulation   *T, *TAux = NULL;
97627f02ce8SMatthew G. Knepley   PetscScalar       *g0, *g1, *g2, *g3, *u, *u_t = NULL, *u_x, *a, *a_x, *basisReal, *basisDerReal, *testReal, *testDerReal;
97727f02ce8SMatthew G. Knepley   const PetscScalar *constants;
97827f02ce8SMatthew G. Knepley   PetscReal         *x;
979665f567fSMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL;
980665f567fSMatthew G. Knepley   PetscInt           NcI = 0, NcJ = 0, NcS, NcT;
98145480ffeSMatthew G. Knepley   PetscInt           dim, dimAux, numConstants, Nf, fieldI, fieldJ, NfAux = 0, totDim, totDimAux = 0, e;
982665f567fSMatthew G. Knepley   PetscBool          isCohesiveFieldI, isCohesiveFieldJ, isAffine, auxOnBd = PETSC_FALSE;
98327f02ce8SMatthew G. Knepley   const PetscReal   *quadPoints, *quadWeights;
98427f02ce8SMatthew G. Knepley   PetscInt           qNc, Nq, q, Np, dE;
98527f02ce8SMatthew G. Knepley   PetscErrorCode     ierr;
98627f02ce8SMatthew G. Knepley 
98727f02ce8SMatthew G. Knepley   PetscFunctionBegin;
98845480ffeSMatthew G. Knepley   ierr = PetscDSGetNumFields(ds, &Nf);CHKERRQ(ierr);
98945480ffeSMatthew G. Knepley   fieldI = key.field / Nf;
99045480ffeSMatthew G. Knepley   fieldJ = key.field % Nf;
99127f02ce8SMatthew G. Knepley   /* Hybrid discretization is posed directly on faces */
99227f02ce8SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldI, (PetscObject *) &feI);CHKERRQ(ierr);
99327f02ce8SMatthew G. Knepley   ierr = PetscDSGetDiscretization(ds, fieldJ, (PetscObject *) &feJ);CHKERRQ(ierr);
99427f02ce8SMatthew G. Knepley   ierr = PetscFEGetSpatialDimension(feI, &dim);CHKERRQ(ierr);
99527f02ce8SMatthew G. Knepley   ierr = PetscFEGetQuadrature(feI, &quad);CHKERRQ(ierr);
99627f02ce8SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(ds, &totDim);CHKERRQ(ierr);
99727f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(ds, &uOff);CHKERRQ(ierr);
99827f02ce8SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(ds, &uOff_x);CHKERRQ(ierr);
999148442b3SMatthew G. Knepley   ierr = PetscDSGetWeakForm(ds, &wf);CHKERRQ(ierr);
100027f02ce8SMatthew G. Knepley   switch(jtype) {
100106ad1575SMatthew G. Knepley   case PETSCFE_JACOBIAN_PRE: ierr = PetscWeakFormGetBdJacobianPreconditioner(wf, key.label, key.value, fieldI, fieldJ, key.part, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
100206ad1575SMatthew G. Knepley   case PETSCFE_JACOBIAN:     ierr = PetscWeakFormGetBdJacobian(wf, key.label, key.value, fieldI, fieldJ, key.part, &n0, &g0_func, &n1, &g1_func, &n2, &g2_func, &n3, &g3_func);CHKERRQ(ierr);break;
1003665f567fSMatthew G. Knepley   case PETSCFE_JACOBIAN_DYN: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No boundary hybrid Jacobians :)");
100427f02ce8SMatthew G. Knepley   }
1005148442b3SMatthew G. Knepley   if (!n0 && !n1 && !n2 && !n3) PetscFunctionReturn(0);
100627f02ce8SMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(ds, &u, coefficients_t ? &u_t : NULL, &u_x);CHKERRQ(ierr);
100727f02ce8SMatthew G. Knepley   ierr = PetscDSGetWorkspace(ds, &x, &basisReal, &basisDerReal, &testReal, &testDerReal);CHKERRQ(ierr);
100827f02ce8SMatthew G. Knepley   ierr = PetscDSGetWeakFormArrays(ds, NULL, NULL, &g0, &g1, &g2, &g3);CHKERRQ(ierr);
1009665f567fSMatthew G. Knepley   ierr = PetscDSGetTabulation(ds, &T);CHKERRQ(ierr);
1010665f567fSMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldI, &offsetI);CHKERRQ(ierr);
1011665f567fSMatthew G. Knepley   ierr = PetscDSGetFieldOffset(ds, fieldJ, &offsetJ);CHKERRQ(ierr);
101227f02ce8SMatthew G. Knepley   ierr = PetscDSGetConstants(ds, &numConstants, &constants);CHKERRQ(ierr);
101327f02ce8SMatthew G. Knepley   if (dsAux) {
101427f02ce8SMatthew G. Knepley     ierr = PetscDSGetSpatialDimension(dsAux, &dimAux);CHKERRQ(ierr);
101527f02ce8SMatthew G. Knepley     ierr = PetscDSGetNumFields(dsAux, &NfAux);CHKERRQ(ierr);
101627f02ce8SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(dsAux, &totDimAux);CHKERRQ(ierr);
101727f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(dsAux, &aOff);CHKERRQ(ierr);
101827f02ce8SMatthew G. Knepley     ierr = PetscDSGetComponentDerivativeOffsets(dsAux, &aOff_x);CHKERRQ(ierr);
101927f02ce8SMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(dsAux, &a, NULL, &a_x);CHKERRQ(ierr);
102001907d53SMatthew G. Knepley     auxOnBd = dimAux == dim ? PETSC_TRUE : PETSC_FALSE;
1021665f567fSMatthew G. Knepley     if (auxOnBd) {ierr = PetscDSGetTabulation(dsAux, &TAux);CHKERRQ(ierr);}
1022665f567fSMatthew G. Knepley     else         {ierr = PetscDSGetFaceTabulation(dsAux, &TAux);CHKERRQ(ierr);}
102301907d53SMatthew G. Knepley     if (T[0]->Np != TAux[0]->Np) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of tabulation points %D != %D number of auxiliary tabulation points", T[0]->Np, TAux[0]->Np);
102427f02ce8SMatthew G. Knepley   }
102527f02ce8SMatthew G. Knepley   isCohesiveFieldI = fieldI == Nf-1 ? PETSC_TRUE : PETSC_FALSE;
102627f02ce8SMatthew G. Knepley   isCohesiveFieldJ = fieldJ == Nf-1 ? PETSC_TRUE : PETSC_FALSE;
1027665f567fSMatthew G. Knepley   NcI = T[fieldI]->Nc;
1028665f567fSMatthew G. Knepley   NcJ = T[fieldJ]->Nc;
102927f02ce8SMatthew G. Knepley   NcS = isCohesiveFieldI ? NcI : 2*NcI;
103027f02ce8SMatthew G. Knepley   NcT = isCohesiveFieldJ ? NcJ : 2*NcJ;
103127f02ce8SMatthew G. Knepley   Np = fgeom->numPoints;
103227f02ce8SMatthew G. Knepley   dE = fgeom->dimEmbed;
103327f02ce8SMatthew G. Knepley   isAffine = fgeom->isAffine;
103427f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g0, NcS*NcT);CHKERRQ(ierr);
103527f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g1, NcS*NcT*dE);CHKERRQ(ierr);
103627f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g2, NcS*NcT*dE);CHKERRQ(ierr);
103727f02ce8SMatthew G. Knepley   ierr = PetscArrayzero(g3, NcS*NcT*dE*dE);CHKERRQ(ierr);
1038665f567fSMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
1039665f567fSMatthew G. Knepley   if (qNc != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supports scalar quadrature, not %D components\n", qNc);
104027f02ce8SMatthew G. Knepley   for (e = 0; e < Ne; ++e) {
104127f02ce8SMatthew G. Knepley     PetscFEGeom    fegeom;
104227f02ce8SMatthew G. Knepley     const PetscInt face = fgeom->face[e][0];
104327f02ce8SMatthew G. Knepley 
104427f02ce8SMatthew G. Knepley     fegeom.dim      = fgeom->dim;
104527f02ce8SMatthew G. Knepley     fegeom.dimEmbed = fgeom->dimEmbed;
104627f02ce8SMatthew G. Knepley     if (isAffine) {
104727f02ce8SMatthew G. Knepley       fegeom.v    = x;
104827f02ce8SMatthew G. Knepley       fegeom.xi   = fgeom->xi;
104927f02ce8SMatthew G. Knepley       fegeom.J    = &fgeom->J[e*dE*dE];
105027f02ce8SMatthew G. Knepley       fegeom.invJ = &fgeom->invJ[e*dE*dE];
105127f02ce8SMatthew G. Knepley       fegeom.detJ = &fgeom->detJ[e];
105227f02ce8SMatthew G. Knepley       fegeom.n    = &fgeom->n[e*dE];
105327f02ce8SMatthew G. Knepley     }
105427f02ce8SMatthew G. Knepley     for (q = 0; q < Nq; ++q) {
105527f02ce8SMatthew G. Knepley       PetscReal w;
105627f02ce8SMatthew G. Knepley       PetscInt  c;
105727f02ce8SMatthew G. Knepley 
105827f02ce8SMatthew G. Knepley       if (isAffine) {
105927f02ce8SMatthew G. Knepley         /* TODO Is it correct to have 'dim' here, or should it be 'dim-1'? */
106027f02ce8SMatthew G. Knepley         CoordinatesRefToReal(dE, dim, fegeom.xi, &fgeom->v[e*dE], fegeom.J, &quadPoints[q*dim], x);
106127f02ce8SMatthew G. Knepley       } else {
106227f02ce8SMatthew G. Knepley         fegeom.v    = &fegeom.v[(e*Np+q)*dE];
106327f02ce8SMatthew G. Knepley         fegeom.J    = &fgeom->J[(e*Np+q)*dE*dE];
106427f02ce8SMatthew G. Knepley         fegeom.invJ = &fgeom->invJ[(e*Np+q)*dE*dE];
106527f02ce8SMatthew G. Knepley         fegeom.detJ = &fgeom->detJ[e*Np+q];
106627f02ce8SMatthew G. Knepley         fegeom.n    = &fgeom->n[(e*Np+q)*dE];
106727f02ce8SMatthew G. Knepley       }
106827f02ce8SMatthew G. Knepley       w = fegeom.detJ[0]*quadWeights[q];
106927f02ce8SMatthew G. Knepley       if (debug > 1 && q < Np) {
107027f02ce8SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "  detJ: %g\n", fegeom.detJ[0]);CHKERRQ(ierr);
107127f02ce8SMatthew G. Knepley #if !defined(PETSC_USE_COMPLEX)
107227f02ce8SMatthew G. Knepley         ierr = DMPrintCellMatrix(e, "invJ", dim, dim, fegeom.invJ);CHKERRQ(ierr);
107327f02ce8SMatthew G. Knepley #endif
107427f02ce8SMatthew G. Knepley       }
107527f02ce8SMatthew G. Knepley       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  quad point %d\n", q);CHKERRQ(ierr);}
1076665f567fSMatthew G. Knepley       if (coefficients) {ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(ds, Nf, 0, q, T, &fegeom, &coefficients[cOffset], &coefficients_t[cOffset], u, u_x, u_t);CHKERRQ(ierr);}
1077665f567fSMatthew G. Knepley       if (dsAux) {ierr = PetscFEEvaluateFieldJets_Hybrid_Internal(dsAux, NfAux, 0, auxOnBd ? q : face*Nq+q, TAux, &fegeom, &coefficientsAux[cOffsetAux], NULL, a, a_x, NULL);CHKERRQ(ierr);}
1078ea672e62SMatthew G. Knepley       if (n0) {
107927f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g0, NcS*NcT);CHKERRQ(ierr);
1080148442b3SMatthew G. Knepley         for (i = 0; i < n0; ++i) g0_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g0);
108127f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT; ++c) g0[c] *= w;
108227f02ce8SMatthew G. Knepley       }
1083ea672e62SMatthew G. Knepley       if (n1) {
108427f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g1, NcS*NcT*dE);CHKERRQ(ierr);
1085148442b3SMatthew G. Knepley         for (i = 0; i < n1; ++i) g1_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g1);
108627f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT*dE; ++c) g1[c] *= w;
108727f02ce8SMatthew G. Knepley       }
1088ea672e62SMatthew G. Knepley       if (n2) {
108927f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g2, NcS*NcT*dE);CHKERRQ(ierr);
1090148442b3SMatthew G. Knepley         for (i = 0; i < n2; ++i) g2_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g2);
109127f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT*dE; ++c) g2[c] *= w;
109227f02ce8SMatthew G. Knepley       }
1093ea672e62SMatthew G. Knepley       if (n3) {
109427f02ce8SMatthew G. Knepley         ierr = PetscArrayzero(g3, NcS*NcT*dE*dE);CHKERRQ(ierr);
1095148442b3SMatthew G. Knepley         for (i = 0; i < n3; ++i) g3_func[i](dim, Nf, NfAux, uOff, uOff_x, u, u_t, u_x, aOff, aOff_x, a, NULL, a_x, t, u_tshift, fegeom.v, fegeom.n, numConstants, constants, g3);
109627f02ce8SMatthew G. Knepley         for (c = 0; c < NcS*NcT*dE*dE; ++c) g3[c] *= w;
109727f02ce8SMatthew G. Knepley       }
109827f02ce8SMatthew G. Knepley 
109927f02ce8SMatthew G. Knepley       if (isCohesiveFieldI && isCohesiveFieldJ) {
1100665f567fSMatthew G. Knepley         ierr = PetscFEUpdateElementMat_Internal(feI, feJ, 0, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &fegeom, g0, g1, g2, g3, eOffset, totDim, offsetI*2, offsetJ*2, elemMat);CHKERRQ(ierr);
110127f02ce8SMatthew G. Knepley       } else {
1102665f567fSMatthew G. Knepley         ierr = PetscFEUpdateElementMat_Hybrid_Internal(feI, isCohesiveFieldI, feJ, isCohesiveFieldJ, 0, q, T[fieldI], basisReal, basisDerReal, T[fieldJ], testReal, testDerReal, &fegeom, g0, g1, g2, g3, eOffset, totDim, offsetI*2, offsetJ*2, elemMat);CHKERRQ(ierr);
110327f02ce8SMatthew G. Knepley       }
110427f02ce8SMatthew G. Knepley     }
110527f02ce8SMatthew G. Knepley     if (debug > 1) {
110627f02ce8SMatthew G. Knepley       PetscInt fc, f, gc, g;
110727f02ce8SMatthew G. Knepley 
110827f02ce8SMatthew G. Knepley       ierr = PetscPrintf(PETSC_COMM_SELF, "Element matrix for fields %d and %d\n", fieldI, fieldJ);CHKERRQ(ierr);
110927f02ce8SMatthew G. Knepley       for (fc = 0; fc < NcI; ++fc) {
1110665f567fSMatthew G. Knepley         for (f = 0; f < T[fieldI]->Nb; ++f) {
111127f02ce8SMatthew G. Knepley           const PetscInt i = offsetI + f*NcI+fc;
111227f02ce8SMatthew G. Knepley           for (gc = 0; gc < NcJ; ++gc) {
1113665f567fSMatthew G. Knepley             for (g = 0; g < T[fieldJ]->Nb; ++g) {
111427f02ce8SMatthew G. Knepley               const PetscInt j = offsetJ + g*NcJ+gc;
111527f02ce8SMatthew G. Knepley               ierr = PetscPrintf(PETSC_COMM_SELF, "    elemMat[%d,%d,%d,%d]: %g\n", f, fc, g, gc, PetscRealPart(elemMat[eOffset+i*totDim+j]));CHKERRQ(ierr);
111627f02ce8SMatthew G. Knepley             }
111727f02ce8SMatthew G. Knepley           }
111827f02ce8SMatthew G. Knepley           ierr = PetscPrintf(PETSC_COMM_SELF, "\n");CHKERRQ(ierr);
111927f02ce8SMatthew G. Knepley         }
112027f02ce8SMatthew G. Knepley       }
112127f02ce8SMatthew G. Knepley     }
112227f02ce8SMatthew G. Knepley     cOffset    += totDim;
112327f02ce8SMatthew G. Knepley     cOffsetAux += totDimAux;
112427f02ce8SMatthew G. Knepley     eOffset    += PetscSqr(totDim);
112527f02ce8SMatthew G. Knepley   }
112627f02ce8SMatthew G. Knepley   PetscFunctionReturn(0);
112727f02ce8SMatthew G. Knepley }
112827f02ce8SMatthew G. Knepley 
11292b99622eSMatthew G. Knepley static PetscErrorCode PetscFEInitialize_Basic(PetscFE fem)
113020cf1dd8SToby Isaac {
113120cf1dd8SToby Isaac   PetscFunctionBegin;
113220cf1dd8SToby Isaac   fem->ops->setfromoptions          = NULL;
113320cf1dd8SToby Isaac   fem->ops->setup                   = PetscFESetUp_Basic;
113420cf1dd8SToby Isaac   fem->ops->view                    = PetscFEView_Basic;
113520cf1dd8SToby Isaac   fem->ops->destroy                 = PetscFEDestroy_Basic;
113620cf1dd8SToby Isaac   fem->ops->getdimension            = PetscFEGetDimension_Basic;
1137ef0bb6c7SMatthew G. Knepley   fem->ops->createtabulation        = PetscFECreateTabulation_Basic;
113820cf1dd8SToby Isaac   fem->ops->integrate               = PetscFEIntegrate_Basic;
1139afe6d6adSToby Isaac   fem->ops->integratebd             = PetscFEIntegrateBd_Basic;
114020cf1dd8SToby Isaac   fem->ops->integrateresidual       = PetscFEIntegrateResidual_Basic;
114120cf1dd8SToby Isaac   fem->ops->integratebdresidual     = PetscFEIntegrateBdResidual_Basic;
114227f02ce8SMatthew G. Knepley   fem->ops->integratehybridresidual = PetscFEIntegrateHybridResidual_Basic;
114320cf1dd8SToby Isaac   fem->ops->integratejacobianaction = NULL/* PetscFEIntegrateJacobianAction_Basic */;
114420cf1dd8SToby Isaac   fem->ops->integratejacobian       = PetscFEIntegrateJacobian_Basic;
114520cf1dd8SToby Isaac   fem->ops->integratebdjacobian     = PetscFEIntegrateBdJacobian_Basic;
114627f02ce8SMatthew G. Knepley   fem->ops->integratehybridjacobian = PetscFEIntegrateHybridJacobian_Basic;
114720cf1dd8SToby Isaac   PetscFunctionReturn(0);
114820cf1dd8SToby Isaac }
114920cf1dd8SToby Isaac 
115020cf1dd8SToby Isaac /*MC
115120cf1dd8SToby Isaac   PETSCFEBASIC = "basic" - A PetscFE object that integrates with basic tiling and no vectorization
115220cf1dd8SToby Isaac 
115320cf1dd8SToby Isaac   Level: intermediate
115420cf1dd8SToby Isaac 
115520cf1dd8SToby Isaac .seealso: PetscFEType, PetscFECreate(), PetscFESetType()
115620cf1dd8SToby Isaac M*/
115720cf1dd8SToby Isaac 
115820cf1dd8SToby Isaac PETSC_EXTERN PetscErrorCode PetscFECreate_Basic(PetscFE fem)
115920cf1dd8SToby Isaac {
116020cf1dd8SToby Isaac   PetscFE_Basic *b;
116120cf1dd8SToby Isaac   PetscErrorCode ierr;
116220cf1dd8SToby Isaac 
116320cf1dd8SToby Isaac   PetscFunctionBegin;
116420cf1dd8SToby Isaac   PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1);
116520cf1dd8SToby Isaac   ierr      = PetscNewLog(fem,&b);CHKERRQ(ierr);
116620cf1dd8SToby Isaac   fem->data = b;
116720cf1dd8SToby Isaac 
116820cf1dd8SToby Isaac   ierr = PetscFEInitialize_Basic(fem);CHKERRQ(ierr);
116920cf1dd8SToby Isaac   PetscFunctionReturn(0);
117020cf1dd8SToby Isaac }
1171