147c6ae99SBarry Smith 2ccd284c7SBarry Smith #include <../src/dm/impls/composite/packimpl.h> /*I "petscdmcomposite.h" I*/ 301e13f73SMatthew G. Knepley #include <petsc-private/isimpl.h> 42764a2aaSMatthew G. Knepley #include <petscds.h> 547c6ae99SBarry Smith 647c6ae99SBarry Smith #undef __FUNCT__ 747c6ae99SBarry Smith #define __FUNCT__ "DMCompositeSetCoupling" 847c6ae99SBarry Smith /*@C 947c6ae99SBarry Smith DMCompositeSetCoupling - Sets user provided routines that compute the coupling between the 109ae5db72SJed Brown seperate components (DMs) in a DMto build the correct matrix nonzero structure. 1147c6ae99SBarry Smith 1247c6ae99SBarry Smith 1347c6ae99SBarry Smith Logically Collective on MPI_Comm 1447c6ae99SBarry Smith 1547c6ae99SBarry Smith Input Parameter: 1647c6ae99SBarry Smith + dm - the composite object 1747c6ae99SBarry Smith - formcouplelocations - routine to set the nonzero locations in the matrix 1847c6ae99SBarry Smith 1947c6ae99SBarry Smith Level: advanced 2047c6ae99SBarry Smith 211b2093e4SBarry Smith Notes: See DMSetApplicationContext() and DMGetApplicationContext() for how to get user information into 2247c6ae99SBarry Smith this routine 2347c6ae99SBarry Smith 2447c6ae99SBarry Smith @*/ 257087cfbeSBarry Smith PetscErrorCode DMCompositeSetCoupling(DM dm,PetscErrorCode (*FormCoupleLocations)(DM,Mat,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt,PetscInt)) 2647c6ae99SBarry Smith { 2747c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 2847c6ae99SBarry Smith 2947c6ae99SBarry Smith PetscFunctionBegin; 3047c6ae99SBarry Smith com->FormCoupleLocations = FormCoupleLocations; 3147c6ae99SBarry Smith PetscFunctionReturn(0); 3247c6ae99SBarry Smith } 3347c6ae99SBarry Smith 3447c6ae99SBarry Smith #undef __FUNCT__ 350c010503SBarry Smith #define __FUNCT__ "DMDestroy_Composite" 366bf464f9SBarry Smith PetscErrorCode DMDestroy_Composite(DM dm) 3747c6ae99SBarry Smith { 3847c6ae99SBarry Smith PetscErrorCode ierr; 3947c6ae99SBarry Smith struct DMCompositeLink *next, *prev; 4047c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 4147c6ae99SBarry Smith 4247c6ae99SBarry Smith PetscFunctionBegin; 4347c6ae99SBarry Smith next = com->next; 4447c6ae99SBarry Smith while (next) { 4547c6ae99SBarry Smith prev = next; 4647c6ae99SBarry Smith next = next->next; 47fcfd50ebSBarry Smith ierr = DMDestroy(&prev->dm);CHKERRQ(ierr); 4847c6ae99SBarry Smith ierr = PetscFree(prev->grstarts);CHKERRQ(ierr); 4947c6ae99SBarry Smith ierr = PetscFree(prev);CHKERRQ(ierr); 5047c6ae99SBarry Smith } 51435a35e8SMatthew G Knepley /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 52435a35e8SMatthew G Knepley ierr = PetscFree(com);CHKERRQ(ierr); 5347c6ae99SBarry Smith PetscFunctionReturn(0); 5447c6ae99SBarry Smith } 5547c6ae99SBarry Smith 5647c6ae99SBarry Smith #undef __FUNCT__ 570c010503SBarry Smith #define __FUNCT__ "DMView_Composite" 587087cfbeSBarry Smith PetscErrorCode DMView_Composite(DM dm,PetscViewer v) 5947c6ae99SBarry Smith { 6047c6ae99SBarry Smith PetscErrorCode ierr; 6147c6ae99SBarry Smith PetscBool iascii; 6247c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 6347c6ae99SBarry Smith 6447c6ae99SBarry Smith PetscFunctionBegin; 65251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)v,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6647c6ae99SBarry Smith if (iascii) { 6747c6ae99SBarry Smith struct DMCompositeLink *lnk = com->next; 6847c6ae99SBarry Smith PetscInt i; 6947c6ae99SBarry Smith 7047c6ae99SBarry Smith ierr = PetscViewerASCIIPrintf(v,"DM (%s)\n",((PetscObject)dm)->prefix ? ((PetscObject)dm)->prefix : "no prefix");CHKERRQ(ierr); 719ae5db72SJed Brown ierr = PetscViewerASCIIPrintf(v," contains %D DMs\n",com->nDM);CHKERRQ(ierr); 7247c6ae99SBarry Smith ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 7347c6ae99SBarry Smith for (i=0; lnk; lnk=lnk->next,i++) { 749ae5db72SJed Brown ierr = PetscViewerASCIIPrintf(v,"Link %D: DM of type %s\n",i,((PetscObject)lnk->dm)->type_name);CHKERRQ(ierr); 7547c6ae99SBarry Smith ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 7647c6ae99SBarry Smith ierr = DMView(lnk->dm,v);CHKERRQ(ierr); 7747c6ae99SBarry Smith ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 7847c6ae99SBarry Smith } 7947c6ae99SBarry Smith ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 8047c6ae99SBarry Smith } 8147c6ae99SBarry Smith PetscFunctionReturn(0); 8247c6ae99SBarry Smith } 8347c6ae99SBarry Smith 8447c6ae99SBarry Smith /* --------------------------------------------------------------------------------------*/ 8547c6ae99SBarry Smith #undef __FUNCT__ 86d7bf68aeSBarry Smith #define __FUNCT__ "DMSetUp_Composite" 877087cfbeSBarry Smith PetscErrorCode DMSetUp_Composite(DM dm) 8847c6ae99SBarry Smith { 8947c6ae99SBarry Smith PetscErrorCode ierr; 9047c6ae99SBarry Smith PetscInt nprev = 0; 9147c6ae99SBarry Smith PetscMPIInt rank,size; 9247c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 9347c6ae99SBarry Smith struct DMCompositeLink *next = com->next; 9447c6ae99SBarry Smith PetscLayout map; 9547c6ae99SBarry Smith 9647c6ae99SBarry Smith PetscFunctionBegin; 97ce94432eSBarry Smith if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Packer has already been setup"); 98ce94432eSBarry Smith ierr = PetscLayoutCreate(PetscObjectComm((PetscObject)dm),&map);CHKERRQ(ierr); 9947c6ae99SBarry Smith ierr = PetscLayoutSetLocalSize(map,com->n);CHKERRQ(ierr); 10047c6ae99SBarry Smith ierr = PetscLayoutSetSize(map,PETSC_DETERMINE);CHKERRQ(ierr); 10147c6ae99SBarry Smith ierr = PetscLayoutSetBlockSize(map,1);CHKERRQ(ierr); 10247c6ae99SBarry Smith ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 10347c6ae99SBarry Smith ierr = PetscLayoutGetSize(map,&com->N);CHKERRQ(ierr); 1040298fd71SBarry Smith ierr = PetscLayoutGetRange(map,&com->rstart,NULL);CHKERRQ(ierr); 105fcfd50ebSBarry Smith ierr = PetscLayoutDestroy(&map);CHKERRQ(ierr); 10647c6ae99SBarry Smith 1079ae5db72SJed Brown /* now set the rstart for each linked vector */ 108ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 109ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr); 11047c6ae99SBarry Smith while (next) { 11147c6ae99SBarry Smith next->rstart = nprev; 11206ebdd98SJed Brown nprev += next->n; 11347c6ae99SBarry Smith next->grstart = com->rstart + next->rstart; 114785e854fSJed Brown ierr = PetscMalloc1(size,&next->grstarts);CHKERRQ(ierr); 115ce94432eSBarry Smith ierr = MPI_Allgather(&next->grstart,1,MPIU_INT,next->grstarts,1,MPIU_INT,PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 11647c6ae99SBarry Smith next = next->next; 11747c6ae99SBarry Smith } 11847c6ae99SBarry Smith com->setup = PETSC_TRUE; 11947c6ae99SBarry Smith PetscFunctionReturn(0); 12047c6ae99SBarry Smith } 12147c6ae99SBarry Smith 12247c6ae99SBarry Smith /* ----------------------------------------------------------------------------------*/ 12347c6ae99SBarry Smith 12447c6ae99SBarry Smith #undef __FUNCT__ 12547c6ae99SBarry Smith #define __FUNCT__ "DMCompositeGetNumberDM" 12673e31fe2SJed Brown /*@ 12747c6ae99SBarry Smith DMCompositeGetNumberDM - Get's the number of DM objects in the DMComposite 12847c6ae99SBarry Smith representation. 12947c6ae99SBarry Smith 13047c6ae99SBarry Smith Not Collective 13147c6ae99SBarry Smith 13247c6ae99SBarry Smith Input Parameter: 13347c6ae99SBarry Smith . dm - the packer object 13447c6ae99SBarry Smith 13547c6ae99SBarry Smith Output Parameter: 13647c6ae99SBarry Smith . nDM - the number of DMs 13747c6ae99SBarry Smith 13847c6ae99SBarry Smith Level: beginner 13947c6ae99SBarry Smith 14047c6ae99SBarry Smith @*/ 1417087cfbeSBarry Smith PetscErrorCode DMCompositeGetNumberDM(DM dm,PetscInt *nDM) 14247c6ae99SBarry Smith { 14347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 1445fd66863SKarl Rupp 14547c6ae99SBarry Smith PetscFunctionBegin; 14647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 14747c6ae99SBarry Smith *nDM = com->nDM; 14847c6ae99SBarry Smith PetscFunctionReturn(0); 14947c6ae99SBarry Smith } 15047c6ae99SBarry Smith 15147c6ae99SBarry Smith 15247c6ae99SBarry Smith #undef __FUNCT__ 15347c6ae99SBarry Smith #define __FUNCT__ "DMCompositeGetAccess" 15447c6ae99SBarry Smith /*@C 15547c6ae99SBarry Smith DMCompositeGetAccess - Allows one to access the individual packed vectors in their global 15647c6ae99SBarry Smith representation. 15747c6ae99SBarry Smith 15847c6ae99SBarry Smith Collective on DMComposite 15947c6ae99SBarry Smith 1609ae5db72SJed Brown Input Parameters: 16147c6ae99SBarry Smith + dm - the packer object 1629ae5db72SJed Brown - gvec - the global vector 1639ae5db72SJed Brown 1649ae5db72SJed Brown Output Parameters: 1650298fd71SBarry Smith . Vec* ... - the packed parallel vectors, NULL for those that are not needed 16647c6ae99SBarry Smith 16747c6ae99SBarry Smith Notes: Use DMCompositeRestoreAccess() to return the vectors when you no longer need them 16847c6ae99SBarry Smith 169f73e5cebSJed Brown Fortran Notes: 170f73e5cebSJed Brown 171f73e5cebSJed Brown Fortran callers must use numbered versions of this routine, e.g., DMCompositeGetAccess4(dm,gvec,vec1,vec2,vec3,vec4) 172f73e5cebSJed Brown or use the alternative interface DMCompositeGetAccessArray(). 173f73e5cebSJed Brown 17447c6ae99SBarry Smith Level: advanced 17547c6ae99SBarry Smith 176f73e5cebSJed Brown .seealso: DMCompositeGetEntries(), DMCompositeScatter() 17747c6ae99SBarry Smith @*/ 1787087cfbeSBarry Smith PetscErrorCode DMCompositeGetAccess(DM dm,Vec gvec,...) 17947c6ae99SBarry Smith { 18047c6ae99SBarry Smith va_list Argp; 18147c6ae99SBarry Smith PetscErrorCode ierr; 18247c6ae99SBarry Smith struct DMCompositeLink *next; 18347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 18447c6ae99SBarry Smith 18547c6ae99SBarry Smith PetscFunctionBegin; 18647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18747c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 18847c6ae99SBarry Smith next = com->next; 18947c6ae99SBarry Smith if (!com->setup) { 190d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 19147c6ae99SBarry Smith } 19247c6ae99SBarry Smith 19347c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 19447c6ae99SBarry Smith va_start(Argp,gvec); 19547c6ae99SBarry Smith while (next) { 19647c6ae99SBarry Smith Vec *vec; 19747c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 1989ae5db72SJed Brown if (vec) { 1999ae5db72SJed Brown PetscScalar *array; 2009ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,vec);CHKERRQ(ierr); 2019ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 2029ae5db72SJed Brown ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 2039ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 20447c6ae99SBarry Smith } 20547c6ae99SBarry Smith next = next->next; 20647c6ae99SBarry Smith } 20747c6ae99SBarry Smith va_end(Argp); 20847c6ae99SBarry Smith PetscFunctionReturn(0); 20947c6ae99SBarry Smith } 21047c6ae99SBarry Smith 21147c6ae99SBarry Smith #undef __FUNCT__ 212f73e5cebSJed Brown #define __FUNCT__ "DMCompositeGetAccessArray" 213f73e5cebSJed Brown /*@C 214f73e5cebSJed Brown DMCompositeGetAccessArray - Allows one to access the individual packed vectors in their global 215f73e5cebSJed Brown representation. 216f73e5cebSJed Brown 217f73e5cebSJed Brown Collective on DMComposite 218f73e5cebSJed Brown 219f73e5cebSJed Brown Input Parameters: 220f73e5cebSJed Brown + dm - the packer object 221f73e5cebSJed Brown . pvec - packed vector 222f73e5cebSJed Brown . nwanted - number of vectors wanted 2230298fd71SBarry Smith - wanted - sorted array of vectors wanted, or NULL to get all vectors 224f73e5cebSJed Brown 225f73e5cebSJed Brown Output Parameters: 226f73e5cebSJed Brown . vecs - array of requested global vectors (must be allocated) 227f73e5cebSJed Brown 228f73e5cebSJed Brown Notes: Use DMCompositeRestoreAccessArray() to return the vectors when you no longer need them 229f73e5cebSJed Brown 230f73e5cebSJed Brown Level: advanced 231f73e5cebSJed Brown 232f73e5cebSJed Brown .seealso: DMCompositeGetAccess(), DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 233f73e5cebSJed Brown @*/ 234f73e5cebSJed Brown PetscErrorCode DMCompositeGetAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 235f73e5cebSJed Brown { 236f73e5cebSJed Brown PetscErrorCode ierr; 237f73e5cebSJed Brown struct DMCompositeLink *link; 238f73e5cebSJed Brown PetscInt i,wnum; 239f73e5cebSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 240f73e5cebSJed Brown 241f73e5cebSJed Brown PetscFunctionBegin; 242f73e5cebSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 243f73e5cebSJed Brown PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 244f73e5cebSJed Brown if (!com->setup) { 245f73e5cebSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 246f73e5cebSJed Brown } 247f73e5cebSJed Brown 248f73e5cebSJed Brown for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 249f73e5cebSJed Brown if (!wanted || i == wanted[wnum]) { 250f73e5cebSJed Brown PetscScalar *array; 251f73e5cebSJed Brown Vec v; 252f73e5cebSJed Brown ierr = DMGetGlobalVector(link->dm,&v);CHKERRQ(ierr); 253f73e5cebSJed Brown ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 254f73e5cebSJed Brown ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 255f73e5cebSJed Brown ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 256f73e5cebSJed Brown vecs[wnum++] = v; 257f73e5cebSJed Brown } 258f73e5cebSJed Brown } 259f73e5cebSJed Brown PetscFunctionReturn(0); 260f73e5cebSJed Brown } 261f73e5cebSJed Brown 262f73e5cebSJed Brown #undef __FUNCT__ 26347c6ae99SBarry Smith #define __FUNCT__ "DMCompositeRestoreAccess" 26447c6ae99SBarry Smith /*@C 265aa219208SBarry Smith DMCompositeRestoreAccess - Returns the vectors obtained with DMCompositeGetAccess() 26647c6ae99SBarry Smith representation. 26747c6ae99SBarry Smith 26847c6ae99SBarry Smith Collective on DMComposite 26947c6ae99SBarry Smith 2709ae5db72SJed Brown Input Parameters: 27147c6ae99SBarry Smith + dm - the packer object 27247c6ae99SBarry Smith . gvec - the global vector 2730298fd71SBarry Smith - Vec* ... - the individual parallel vectors, NULL for those that are not needed 27447c6ae99SBarry Smith 27547c6ae99SBarry Smith Level: advanced 27647c6ae99SBarry Smith 2779ae5db72SJed Brown .seealso DMCompositeAddDM(), DMCreateGlobalVector(), 2786eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeScatter(), 279aa219208SBarry Smith DMCompositeRestoreAccess(), DMCompositeGetAccess() 28047c6ae99SBarry Smith 28147c6ae99SBarry Smith @*/ 2827087cfbeSBarry Smith PetscErrorCode DMCompositeRestoreAccess(DM dm,Vec gvec,...) 28347c6ae99SBarry Smith { 28447c6ae99SBarry Smith va_list Argp; 28547c6ae99SBarry Smith PetscErrorCode ierr; 28647c6ae99SBarry Smith struct DMCompositeLink *next; 28747c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 28847c6ae99SBarry Smith 28947c6ae99SBarry Smith PetscFunctionBegin; 29047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 29147c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 29247c6ae99SBarry Smith next = com->next; 29347c6ae99SBarry Smith if (!com->setup) { 294d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 29547c6ae99SBarry Smith } 29647c6ae99SBarry Smith 29747c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 29847c6ae99SBarry Smith va_start(Argp,gvec); 29947c6ae99SBarry Smith while (next) { 30047c6ae99SBarry Smith Vec *vec; 30147c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 3029ae5db72SJed Brown if (vec) { 3039ae5db72SJed Brown ierr = VecResetArray(*vec);CHKERRQ(ierr); 3049ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,vec);CHKERRQ(ierr); 30547c6ae99SBarry Smith } 30647c6ae99SBarry Smith next = next->next; 30747c6ae99SBarry Smith } 30847c6ae99SBarry Smith va_end(Argp); 30947c6ae99SBarry Smith PetscFunctionReturn(0); 31047c6ae99SBarry Smith } 31147c6ae99SBarry Smith 31247c6ae99SBarry Smith #undef __FUNCT__ 313f73e5cebSJed Brown #define __FUNCT__ "DMCompositeRestoreAccessArray" 314f73e5cebSJed Brown /*@C 315f73e5cebSJed Brown DMCompositeRestoreAccessArray - Returns the vectors obtained with DMCompositeGetAccessArray() 316f73e5cebSJed Brown 317f73e5cebSJed Brown Collective on DMComposite 318f73e5cebSJed Brown 319f73e5cebSJed Brown Input Parameters: 320f73e5cebSJed Brown + dm - the packer object 321f73e5cebSJed Brown . pvec - packed vector 322f73e5cebSJed Brown . nwanted - number of vectors wanted 3230298fd71SBarry Smith . wanted - sorted array of vectors wanted, or NULL to get all vectors 324f73e5cebSJed Brown - vecs - array of global vectors to return 325f73e5cebSJed Brown 326f73e5cebSJed Brown Level: advanced 327f73e5cebSJed Brown 328f73e5cebSJed Brown .seealso: DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), DMCompositeScatter(), DMCompositeGather() 329f73e5cebSJed Brown @*/ 330f73e5cebSJed Brown PetscErrorCode DMCompositeRestoreAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 331f73e5cebSJed Brown { 332f73e5cebSJed Brown PetscErrorCode ierr; 333f73e5cebSJed Brown struct DMCompositeLink *link; 334f73e5cebSJed Brown PetscInt i,wnum; 335f73e5cebSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 336f73e5cebSJed Brown 337f73e5cebSJed Brown PetscFunctionBegin; 338f73e5cebSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 339f73e5cebSJed Brown PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 340f73e5cebSJed Brown if (!com->setup) { 341f73e5cebSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 342f73e5cebSJed Brown } 343f73e5cebSJed Brown 344f73e5cebSJed Brown for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 345f73e5cebSJed Brown if (!wanted || i == wanted[wnum]) { 346f73e5cebSJed Brown ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 347f73e5cebSJed Brown ierr = DMRestoreGlobalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 348f73e5cebSJed Brown wnum++; 349f73e5cebSJed Brown } 350f73e5cebSJed Brown } 351f73e5cebSJed Brown PetscFunctionReturn(0); 352f73e5cebSJed Brown } 353f73e5cebSJed Brown 354f73e5cebSJed Brown #undef __FUNCT__ 35547c6ae99SBarry Smith #define __FUNCT__ "DMCompositeScatter" 35647c6ae99SBarry Smith /*@C 35747c6ae99SBarry Smith DMCompositeScatter - Scatters from a global packed vector into its individual local vectors 35847c6ae99SBarry Smith 35947c6ae99SBarry Smith Collective on DMComposite 36047c6ae99SBarry Smith 3619ae5db72SJed Brown Input Parameters: 36247c6ae99SBarry Smith + dm - the packer object 36347c6ae99SBarry Smith . gvec - the global vector 3640298fd71SBarry Smith - Vec ... - the individual sequential vectors, NULL for those that are not needed 36547c6ae99SBarry Smith 36647c6ae99SBarry Smith Level: advanced 36747c6ae99SBarry Smith 3686f3c3dcfSJed Brown Notes: 3696f3c3dcfSJed Brown DMCompositeScatterArray() is a non-variadic alternative that is often more convenient for library callers and is 3706f3c3dcfSJed Brown accessible from Fortran. 3716f3c3dcfSJed Brown 3729ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 3736eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 37447c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 3756f3c3dcfSJed Brown DMCompositeScatterArray() 37647c6ae99SBarry Smith 37747c6ae99SBarry Smith @*/ 3787087cfbeSBarry Smith PetscErrorCode DMCompositeScatter(DM dm,Vec gvec,...) 37947c6ae99SBarry Smith { 38047c6ae99SBarry Smith va_list Argp; 38147c6ae99SBarry Smith PetscErrorCode ierr; 38247c6ae99SBarry Smith struct DMCompositeLink *next; 3838fd8f222SJed Brown PetscInt cnt; 38447c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 38547c6ae99SBarry Smith 38647c6ae99SBarry Smith PetscFunctionBegin; 38747c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 38847c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 38947c6ae99SBarry Smith if (!com->setup) { 390d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 39147c6ae99SBarry Smith } 39247c6ae99SBarry Smith 39347c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 39447c6ae99SBarry Smith va_start(Argp,gvec); 3958fd8f222SJed Brown for (cnt=3,next=com->next; next; cnt++,next=next->next) { 3969ae5db72SJed Brown Vec local; 3979ae5db72SJed Brown local = va_arg(Argp, Vec); 3989ae5db72SJed Brown if (local) { 3999ae5db72SJed Brown Vec global; 40047c6ae99SBarry Smith PetscScalar *array; 4019ae5db72SJed Brown PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 4029ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 4039ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 4049ae5db72SJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 4059ae5db72SJed Brown ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 4069ae5db72SJed Brown ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 4079ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 4089ae5db72SJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 4099ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 41047c6ae99SBarry Smith } 41147c6ae99SBarry Smith } 41247c6ae99SBarry Smith va_end(Argp); 41347c6ae99SBarry Smith PetscFunctionReturn(0); 41447c6ae99SBarry Smith } 41547c6ae99SBarry Smith 41647c6ae99SBarry Smith #undef __FUNCT__ 4176f3c3dcfSJed Brown #define __FUNCT__ "DMCompositeScatterArray" 4186f3c3dcfSJed Brown /*@ 4196f3c3dcfSJed Brown DMCompositeScatterArray - Scatters from a global packed vector into its individual local vectors 4206f3c3dcfSJed Brown 4216f3c3dcfSJed Brown Collective on DMComposite 4226f3c3dcfSJed Brown 4236f3c3dcfSJed Brown Input Parameters: 4246f3c3dcfSJed Brown + dm - the packer object 4256f3c3dcfSJed Brown . gvec - the global vector 4266f3c3dcfSJed Brown . lvecs - array of local vectors, NULL for any that are not needed 4276f3c3dcfSJed Brown 4286f3c3dcfSJed Brown Level: advanced 4296f3c3dcfSJed Brown 4306f3c3dcfSJed Brown Note: 431*907376e6SBarry Smith This is a non-variadic alternative to DMCompositeScatter() 4326f3c3dcfSJed Brown 4336f3c3dcfSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector() 4346f3c3dcfSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 4356f3c3dcfSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 4366f3c3dcfSJed Brown 4376f3c3dcfSJed Brown @*/ 4386f3c3dcfSJed Brown PetscErrorCode DMCompositeScatterArray(DM dm,Vec gvec,Vec *lvecs) 4396f3c3dcfSJed Brown { 4406f3c3dcfSJed Brown PetscErrorCode ierr; 4416f3c3dcfSJed Brown struct DMCompositeLink *next; 4426f3c3dcfSJed Brown PetscInt i; 4436f3c3dcfSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 4446f3c3dcfSJed Brown 4456f3c3dcfSJed Brown PetscFunctionBegin; 4466f3c3dcfSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 4476f3c3dcfSJed Brown PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 4486f3c3dcfSJed Brown if (!com->setup) { 4496f3c3dcfSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 4506f3c3dcfSJed Brown } 4516f3c3dcfSJed Brown 4526f3c3dcfSJed Brown /* loop over packed objects, handling one at at time */ 4536f3c3dcfSJed Brown for (i=0,next=com->next; next; next=next->next,i++) { 4546f3c3dcfSJed Brown if (lvecs[i]) { 4556f3c3dcfSJed Brown Vec global; 4566f3c3dcfSJed Brown PetscScalar *array; 4576f3c3dcfSJed Brown PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 4586f3c3dcfSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 4596f3c3dcfSJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 4606f3c3dcfSJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 4616f3c3dcfSJed Brown ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 4626f3c3dcfSJed Brown ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 4636f3c3dcfSJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 4646f3c3dcfSJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 4656f3c3dcfSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 4666f3c3dcfSJed Brown } 4676f3c3dcfSJed Brown } 4686f3c3dcfSJed Brown PetscFunctionReturn(0); 4696f3c3dcfSJed Brown } 4706f3c3dcfSJed Brown 4716f3c3dcfSJed Brown #undef __FUNCT__ 47247c6ae99SBarry Smith #define __FUNCT__ "DMCompositeGather" 47347c6ae99SBarry Smith /*@C 47447c6ae99SBarry Smith DMCompositeGather - Gathers into a global packed vector from its individual local vectors 47547c6ae99SBarry Smith 47647c6ae99SBarry Smith Collective on DMComposite 47747c6ae99SBarry Smith 47847c6ae99SBarry Smith Input Parameter: 47947c6ae99SBarry Smith + dm - the packer object 48047c6ae99SBarry Smith . gvec - the global vector 481*907376e6SBarry Smith . imode - INSERT_VALUES or ADD_VALUES 4820298fd71SBarry Smith - Vec ... - the individual sequential vectors, NULL for any that are not needed 48347c6ae99SBarry Smith 48447c6ae99SBarry Smith Level: advanced 48547c6ae99SBarry Smith 4869ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 4876eb61c8cSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 48847c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 48947c6ae99SBarry Smith 49047c6ae99SBarry Smith @*/ 4917087cfbeSBarry Smith PetscErrorCode DMCompositeGather(DM dm,Vec gvec,InsertMode imode,...) 49247c6ae99SBarry Smith { 49347c6ae99SBarry Smith va_list Argp; 49447c6ae99SBarry Smith PetscErrorCode ierr; 49547c6ae99SBarry Smith struct DMCompositeLink *next; 49647c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 4978fd8f222SJed Brown PetscInt cnt; 49847c6ae99SBarry Smith 49947c6ae99SBarry Smith PetscFunctionBegin; 50047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 50147c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 50247c6ae99SBarry Smith if (!com->setup) { 503d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 50447c6ae99SBarry Smith } 50547c6ae99SBarry Smith 50647c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 507df0c820aSJed Brown va_start(Argp,imode); 5088fd8f222SJed Brown for (cnt=3,next=com->next; next; cnt++,next=next->next) { 5099ae5db72SJed Brown Vec local; 5109ae5db72SJed Brown local = va_arg(Argp, Vec); 5119ae5db72SJed Brown if (local) { 51247c6ae99SBarry Smith PetscScalar *array; 5139ae5db72SJed Brown Vec global; 5149ae5db72SJed Brown PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 5159ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 5169ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 5179ae5db72SJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 5189ae5db72SJed Brown ierr = DMLocalToGlobalBegin(next->dm,local,imode,global);CHKERRQ(ierr); 5199ae5db72SJed Brown ierr = DMLocalToGlobalEnd(next->dm,local,imode,global);CHKERRQ(ierr); 5209ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 5219ae5db72SJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 5229ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 52347c6ae99SBarry Smith } 52447c6ae99SBarry Smith } 52547c6ae99SBarry Smith va_end(Argp); 52647c6ae99SBarry Smith PetscFunctionReturn(0); 52747c6ae99SBarry Smith } 52847c6ae99SBarry Smith 52947c6ae99SBarry Smith #undef __FUNCT__ 5306f3c3dcfSJed Brown #define __FUNCT__ "DMCompositeGatherArray" 5316f3c3dcfSJed Brown /*@ 5326f3c3dcfSJed Brown DMCompositeGatherArray - Gathers into a global packed vector from its individual local vectors 5336f3c3dcfSJed Brown 5346f3c3dcfSJed Brown Collective on DMComposite 5356f3c3dcfSJed Brown 5366f3c3dcfSJed Brown Input Parameter: 5376f3c3dcfSJed Brown + dm - the packer object 5386f3c3dcfSJed Brown . gvec - the global vector 539*907376e6SBarry Smith . imode - INSERT_VALUES or ADD_VALUES 5406f3c3dcfSJed Brown - lvecs - the individual sequential vectors, NULL for any that are not needed 5416f3c3dcfSJed Brown 5426f3c3dcfSJed Brown Level: advanced 5436f3c3dcfSJed Brown 5446f3c3dcfSJed Brown Notes: 5456f3c3dcfSJed Brown This is a non-variadic alternative to DMCompositeGather(). 5466f3c3dcfSJed Brown 5476f3c3dcfSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 5486f3c3dcfSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 5496f3c3dcfSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries(), 5506f3c3dcfSJed Brown @*/ 5516f3c3dcfSJed Brown PetscErrorCode DMCompositeGatherArray(DM dm,Vec gvec,InsertMode imode,Vec *lvecs) 5526f3c3dcfSJed Brown { 5536f3c3dcfSJed Brown PetscErrorCode ierr; 5546f3c3dcfSJed Brown struct DMCompositeLink *next; 5556f3c3dcfSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 5566f3c3dcfSJed Brown PetscInt i; 5576f3c3dcfSJed Brown 5586f3c3dcfSJed Brown PetscFunctionBegin; 5596f3c3dcfSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 5606f3c3dcfSJed Brown PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 5616f3c3dcfSJed Brown if (!com->setup) { 5626f3c3dcfSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 5636f3c3dcfSJed Brown } 5646f3c3dcfSJed Brown 5656f3c3dcfSJed Brown /* loop over packed objects, handling one at at time */ 5666f3c3dcfSJed Brown for (next=com->next,i=0; next; next=next->next,i++) { 5676f3c3dcfSJed Brown if (lvecs[i]) { 5686f3c3dcfSJed Brown PetscScalar *array; 5696f3c3dcfSJed Brown Vec global; 5706f3c3dcfSJed Brown PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 5716f3c3dcfSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 5726f3c3dcfSJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 5736f3c3dcfSJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 5746f3c3dcfSJed Brown ierr = DMLocalToGlobalBegin(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 5756f3c3dcfSJed Brown ierr = DMLocalToGlobalEnd(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 5766f3c3dcfSJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 5776f3c3dcfSJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 5786f3c3dcfSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 5796f3c3dcfSJed Brown } 5806f3c3dcfSJed Brown } 5816f3c3dcfSJed Brown PetscFunctionReturn(0); 5826f3c3dcfSJed Brown } 5836f3c3dcfSJed Brown 5846f3c3dcfSJed Brown #undef __FUNCT__ 58547c6ae99SBarry Smith #define __FUNCT__ "DMCompositeAddDM" 58647c6ae99SBarry Smith /*@C 587aa219208SBarry Smith DMCompositeAddDM - adds a DM vector to a DMComposite 58847c6ae99SBarry Smith 58947c6ae99SBarry Smith Collective on DMComposite 59047c6ae99SBarry Smith 59147c6ae99SBarry Smith Input Parameter: 59247c6ae99SBarry Smith + dm - the packer object 59347c6ae99SBarry Smith - dm - the DM object, if the DM is a da you will need to caste it with a (DM) 59447c6ae99SBarry Smith 59547c6ae99SBarry Smith Level: advanced 59647c6ae99SBarry Smith 5970c010503SBarry Smith .seealso DMDestroy(), DMCompositeGather(), DMCompositeAddDM(), DMCreateGlobalVector(), 5986eb61c8cSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 59947c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 60047c6ae99SBarry Smith 60147c6ae99SBarry Smith @*/ 6027087cfbeSBarry Smith PetscErrorCode DMCompositeAddDM(DM dmc,DM dm) 60347c6ae99SBarry Smith { 60447c6ae99SBarry Smith PetscErrorCode ierr; 60506ebdd98SJed Brown PetscInt n,nlocal; 60647c6ae99SBarry Smith struct DMCompositeLink *mine,*next; 60706ebdd98SJed Brown Vec global,local; 60847c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dmc->data; 60947c6ae99SBarry Smith 61047c6ae99SBarry Smith PetscFunctionBegin; 61147c6ae99SBarry Smith PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 61247c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,2); 61347c6ae99SBarry Smith next = com->next; 614ce94432eSBarry Smith if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONGSTATE,"Cannot add a DM once you have used the DMComposite"); 61547c6ae99SBarry Smith 61647c6ae99SBarry Smith /* create new link */ 617b00a9115SJed Brown ierr = PetscNew(&mine);CHKERRQ(ierr); 61847c6ae99SBarry Smith ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 61947c6ae99SBarry Smith ierr = DMGetGlobalVector(dm,&global);CHKERRQ(ierr); 62047c6ae99SBarry Smith ierr = VecGetLocalSize(global,&n);CHKERRQ(ierr); 62147c6ae99SBarry Smith ierr = DMRestoreGlobalVector(dm,&global);CHKERRQ(ierr); 62206ebdd98SJed Brown ierr = DMGetLocalVector(dm,&local);CHKERRQ(ierr); 62306ebdd98SJed Brown ierr = VecGetSize(local,&nlocal);CHKERRQ(ierr); 62406ebdd98SJed Brown ierr = DMRestoreLocalVector(dm,&local);CHKERRQ(ierr); 6258865f1eaSKarl Rupp 62647c6ae99SBarry Smith mine->n = n; 62706ebdd98SJed Brown mine->nlocal = nlocal; 62847c6ae99SBarry Smith mine->dm = dm; 6290298fd71SBarry Smith mine->next = NULL; 63047c6ae99SBarry Smith com->n += n; 63147c6ae99SBarry Smith 63247c6ae99SBarry Smith /* add to end of list */ 6338865f1eaSKarl Rupp if (!next) com->next = mine; 6348865f1eaSKarl Rupp else { 63547c6ae99SBarry Smith while (next->next) next = next->next; 63647c6ae99SBarry Smith next->next = mine; 63747c6ae99SBarry Smith } 63847c6ae99SBarry Smith com->nDM++; 63947c6ae99SBarry Smith com->nmine++; 64047c6ae99SBarry Smith PetscFunctionReturn(0); 64147c6ae99SBarry Smith } 64247c6ae99SBarry Smith 6439804daf3SBarry Smith #include <petscdraw.h> 64426887b52SJed Brown PETSC_EXTERN PetscErrorCode VecView_MPI(Vec,PetscViewer); 64547c6ae99SBarry Smith #undef __FUNCT__ 64647c6ae99SBarry Smith #define __FUNCT__ "VecView_DMComposite" 6477087cfbeSBarry Smith PetscErrorCode VecView_DMComposite(Vec gvec,PetscViewer viewer) 64847c6ae99SBarry Smith { 64947c6ae99SBarry Smith DM dm; 65047c6ae99SBarry Smith PetscErrorCode ierr; 65147c6ae99SBarry Smith struct DMCompositeLink *next; 65247c6ae99SBarry Smith PetscBool isdraw; 653cef07954SSatish Balay DM_Composite *com; 65447c6ae99SBarry Smith 65547c6ae99SBarry Smith PetscFunctionBegin; 656c688c046SMatthew G Knepley ierr = VecGetDM(gvec, &dm);CHKERRQ(ierr); 657ce94432eSBarry Smith if (!dm) SETERRQ(PetscObjectComm((PetscObject)gvec),PETSC_ERR_ARG_WRONG,"Vector not generated from a DMComposite"); 65847c6ae99SBarry Smith com = (DM_Composite*)dm->data; 65947c6ae99SBarry Smith next = com->next; 66047c6ae99SBarry Smith 661251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 66247c6ae99SBarry Smith if (!isdraw) { 66347c6ae99SBarry Smith /* do I really want to call this? */ 66447c6ae99SBarry Smith ierr = VecView_MPI(gvec,viewer);CHKERRQ(ierr); 66547c6ae99SBarry Smith } else { 66647c6ae99SBarry Smith PetscInt cnt = 0; 66747c6ae99SBarry Smith 66847c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 66947c6ae99SBarry Smith while (next) { 67047c6ae99SBarry Smith Vec vec; 6719ae5db72SJed Brown PetscScalar *array; 67247c6ae99SBarry Smith PetscInt bs; 67347c6ae99SBarry Smith 6749ae5db72SJed Brown /* Should use VecGetSubVector() eventually, but would need to forward the DM for that to work */ 6759ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&vec);CHKERRQ(ierr); 6769ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 6779ae5db72SJed Brown ierr = VecPlaceArray(vec,array+next->rstart);CHKERRQ(ierr); 6789ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 67947c6ae99SBarry Smith ierr = VecView(vec,viewer);CHKERRQ(ierr); 68047c6ae99SBarry Smith ierr = VecGetBlockSize(vec,&bs);CHKERRQ(ierr); 6819ae5db72SJed Brown ierr = VecResetArray(vec);CHKERRQ(ierr); 6829ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&vec);CHKERRQ(ierr); 68347c6ae99SBarry Smith ierr = PetscViewerDrawBaseAdd(viewer,bs);CHKERRQ(ierr); 68447c6ae99SBarry Smith cnt += bs; 68547c6ae99SBarry Smith next = next->next; 68647c6ae99SBarry Smith } 68747c6ae99SBarry Smith ierr = PetscViewerDrawBaseAdd(viewer,-cnt);CHKERRQ(ierr); 68847c6ae99SBarry Smith } 68947c6ae99SBarry Smith PetscFunctionReturn(0); 69047c6ae99SBarry Smith } 69147c6ae99SBarry Smith 69247c6ae99SBarry Smith #undef __FUNCT__ 6930c010503SBarry Smith #define __FUNCT__ "DMCreateGlobalVector_Composite" 6947087cfbeSBarry Smith PetscErrorCode DMCreateGlobalVector_Composite(DM dm,Vec *gvec) 69547c6ae99SBarry Smith { 69647c6ae99SBarry Smith PetscErrorCode ierr; 69747c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 69847c6ae99SBarry Smith 69947c6ae99SBarry Smith PetscFunctionBegin; 70047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 701d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 702ce94432eSBarry Smith ierr = VecCreateMPI(PetscObjectComm((PetscObject)dm),com->n,com->N,gvec);CHKERRQ(ierr); 703c688c046SMatthew G Knepley ierr = VecSetDM(*gvec, dm);CHKERRQ(ierr); 70447c6ae99SBarry Smith ierr = VecSetOperation(*gvec,VECOP_VIEW,(void (*)(void))VecView_DMComposite);CHKERRQ(ierr); 70547c6ae99SBarry Smith PetscFunctionReturn(0); 70647c6ae99SBarry Smith } 70747c6ae99SBarry Smith 70847c6ae99SBarry Smith #undef __FUNCT__ 7090c010503SBarry Smith #define __FUNCT__ "DMCreateLocalVector_Composite" 7107087cfbeSBarry Smith PetscErrorCode DMCreateLocalVector_Composite(DM dm,Vec *lvec) 71147c6ae99SBarry Smith { 71247c6ae99SBarry Smith PetscErrorCode ierr; 71347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 71447c6ae99SBarry Smith 71547c6ae99SBarry Smith PetscFunctionBegin; 71647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 71747c6ae99SBarry Smith if (!com->setup) { 718d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 71947c6ae99SBarry Smith } 720ce94432eSBarry Smith ierr = VecCreateSeq(PetscObjectComm((PetscObject)dm),com->nghost,lvec);CHKERRQ(ierr); 721c688c046SMatthew G Knepley ierr = VecSetDM(*lvec, dm);CHKERRQ(ierr); 72247c6ae99SBarry Smith PetscFunctionReturn(0); 72347c6ae99SBarry Smith } 72447c6ae99SBarry Smith 72547c6ae99SBarry Smith #undef __FUNCT__ 7266eb61c8cSJed Brown #define __FUNCT__ "DMCompositeGetISLocalToGlobalMappings" 72747c6ae99SBarry Smith /*@C 7289ae5db72SJed Brown DMCompositeGetISLocalToGlobalMappings - gets an ISLocalToGlobalMapping for each DM in the DMComposite, maps to the composite global space 72947c6ae99SBarry Smith 73006ebdd98SJed Brown Collective on DM 73147c6ae99SBarry Smith 73247c6ae99SBarry Smith Input Parameter: 73347c6ae99SBarry Smith . dm - the packer object 73447c6ae99SBarry Smith 73547c6ae99SBarry Smith Output Parameters: 7369ae5db72SJed Brown . ltogs - the individual mappings for each packed vector. Note that this includes 7379ae5db72SJed Brown all the ghost points that individual ghosted DMDA's may have. 73847c6ae99SBarry Smith 73947c6ae99SBarry Smith Level: advanced 74047c6ae99SBarry Smith 74147c6ae99SBarry Smith Notes: 7426eb61c8cSJed Brown Each entry of ltogs should be destroyed with ISLocalToGlobalMappingDestroy(), the ltogs array should be freed with PetscFree(). 74347c6ae99SBarry Smith 7449ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 74547c6ae99SBarry Smith DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 74647c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 74747c6ae99SBarry Smith 74847c6ae99SBarry Smith @*/ 7497087cfbeSBarry Smith PetscErrorCode DMCompositeGetISLocalToGlobalMappings(DM dm,ISLocalToGlobalMapping **ltogs) 75047c6ae99SBarry Smith { 75147c6ae99SBarry Smith PetscErrorCode ierr; 75247c6ae99SBarry Smith PetscInt i,*idx,n,cnt; 75347c6ae99SBarry Smith struct DMCompositeLink *next; 75447c6ae99SBarry Smith PetscMPIInt rank; 75547c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 75647c6ae99SBarry Smith 75747c6ae99SBarry Smith PetscFunctionBegin; 75847c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 759728e99d6SJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 760854ce69bSBarry Smith ierr = PetscMalloc1(com->nDM,ltogs);CHKERRQ(ierr); 76147c6ae99SBarry Smith next = com->next; 762ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 76347c6ae99SBarry Smith 76447c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 76547c6ae99SBarry Smith cnt = 0; 76647c6ae99SBarry Smith while (next) { 7676eb61c8cSJed Brown ISLocalToGlobalMapping ltog; 7686eb61c8cSJed Brown PetscMPIInt size; 76986994e45SJed Brown const PetscInt *suboff,*indices; 7706eb61c8cSJed Brown Vec global; 77147c6ae99SBarry Smith 7726eb61c8cSJed Brown /* Get sub-DM global indices for each local dof */ 7731411c6eeSJed Brown ierr = DMGetLocalToGlobalMapping(next->dm,<og);CHKERRQ(ierr); 7746eb61c8cSJed Brown ierr = ISLocalToGlobalMappingGetSize(ltog,&n);CHKERRQ(ierr); 77586994e45SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltog,&indices);CHKERRQ(ierr); 776785e854fSJed Brown ierr = PetscMalloc1(n,&idx);CHKERRQ(ierr); 77747c6ae99SBarry Smith 7786eb61c8cSJed Brown /* Get the offsets for the sub-DM global vector */ 7796eb61c8cSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 7806eb61c8cSJed Brown ierr = VecGetOwnershipRanges(global,&suboff);CHKERRQ(ierr); 781ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)global),&size);CHKERRQ(ierr); 7826eb61c8cSJed Brown 7836eb61c8cSJed Brown /* Shift the sub-DM definition of the global space to the composite global space */ 7846eb61c8cSJed Brown for (i=0; i<n; i++) { 78586994e45SJed Brown PetscInt subi = indices[i],lo = 0,hi = size,t; 7866eb61c8cSJed Brown /* Binary search to find which rank owns subi */ 7876eb61c8cSJed Brown while (hi-lo > 1) { 7886eb61c8cSJed Brown t = lo + (hi-lo)/2; 7896eb61c8cSJed Brown if (suboff[t] > subi) hi = t; 7906eb61c8cSJed Brown else lo = t; 7916eb61c8cSJed Brown } 7926eb61c8cSJed Brown idx[i] = subi - suboff[lo] + next->grstarts[lo]; 7936eb61c8cSJed Brown } 79486994e45SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltog,&indices);CHKERRQ(ierr); 795f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm),1,n,idx,PETSC_OWN_POINTER,&(*ltogs)[cnt]);CHKERRQ(ierr); 7966eb61c8cSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 79747c6ae99SBarry Smith next = next->next; 79847c6ae99SBarry Smith cnt++; 79947c6ae99SBarry Smith } 80047c6ae99SBarry Smith PetscFunctionReturn(0); 80147c6ae99SBarry Smith } 80247c6ae99SBarry Smith 80347c6ae99SBarry Smith #undef __FUNCT__ 80487c85e80SJed Brown #define __FUNCT__ "DMCompositeGetLocalISs" 80587c85e80SJed Brown /*@C 8069ae5db72SJed Brown DMCompositeGetLocalISs - Gets index sets for each component of a composite local vector 80787c85e80SJed Brown 80887c85e80SJed Brown Not Collective 80987c85e80SJed Brown 81087c85e80SJed Brown Input Arguments: 81187c85e80SJed Brown . dm - composite DM 81287c85e80SJed Brown 81387c85e80SJed Brown Output Arguments: 81487c85e80SJed Brown . is - array of serial index sets for each each component of the DMComposite 81587c85e80SJed Brown 81687c85e80SJed Brown Level: intermediate 81787c85e80SJed Brown 81887c85e80SJed Brown Notes: 81987c85e80SJed Brown At present, a composite local vector does not normally exist. This function is used to provide index sets for 82087c85e80SJed Brown MatGetLocalSubMatrix(). In the future, the scatters for each entry in the DMComposite may be be merged into a single 8219ae5db72SJed Brown scatter to a composite local vector. The user should not typically need to know which is being done. 82287c85e80SJed Brown 82387c85e80SJed Brown To get the composite global indices at all local points (including ghosts), use DMCompositeGetISLocalToGlobalMappings(). 82487c85e80SJed Brown 82587c85e80SJed Brown To get index sets for pieces of the composite global vector, use DMCompositeGetGlobalISs(). 82687c85e80SJed Brown 82787c85e80SJed Brown Each returned IS should be destroyed with ISDestroy(), the array should be freed with PetscFree(). 82887c85e80SJed Brown 82987c85e80SJed Brown .seealso: DMCompositeGetGlobalISs(), DMCompositeGetISLocalToGlobalMappings(), MatGetLocalSubMatrix(), MatCreateLocalRef() 83087c85e80SJed Brown @*/ 8317087cfbeSBarry Smith PetscErrorCode DMCompositeGetLocalISs(DM dm,IS **is) 83287c85e80SJed Brown { 83387c85e80SJed Brown PetscErrorCode ierr; 83487c85e80SJed Brown DM_Composite *com = (DM_Composite*)dm->data; 83587c85e80SJed Brown struct DMCompositeLink *link; 83687c85e80SJed Brown PetscInt cnt,start; 83787c85e80SJed Brown 83887c85e80SJed Brown PetscFunctionBegin; 83987c85e80SJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 84087c85e80SJed Brown PetscValidPointer(is,2); 841785e854fSJed Brown ierr = PetscMalloc1(com->nmine,is);CHKERRQ(ierr); 84206ebdd98SJed Brown for (cnt=0,start=0,link=com->next; link; start+=link->nlocal,cnt++,link=link->next) { 843520db06cSJed Brown PetscInt bs; 8449ae5db72SJed Brown ierr = ISCreateStride(PETSC_COMM_SELF,link->nlocal,start,1,&(*is)[cnt]);CHKERRQ(ierr); 8451411c6eeSJed Brown ierr = DMGetBlockSize(link->dm,&bs);CHKERRQ(ierr); 846520db06cSJed Brown ierr = ISSetBlockSize((*is)[cnt],bs);CHKERRQ(ierr); 847520db06cSJed Brown } 84887c85e80SJed Brown PetscFunctionReturn(0); 84987c85e80SJed Brown } 85087c85e80SJed Brown 85187c85e80SJed Brown #undef __FUNCT__ 85247c6ae99SBarry Smith #define __FUNCT__ "DMCompositeGetGlobalISs" 85347c6ae99SBarry Smith /*@C 85447c6ae99SBarry Smith DMCompositeGetGlobalISs - Gets the index sets for each composed object 85547c6ae99SBarry Smith 85647c6ae99SBarry Smith Collective on DMComposite 85747c6ae99SBarry Smith 85847c6ae99SBarry Smith Input Parameter: 85947c6ae99SBarry Smith . dm - the packer object 86047c6ae99SBarry Smith 86147c6ae99SBarry Smith Output Parameters: 86247c6ae99SBarry Smith . is - the array of index sets 86347c6ae99SBarry Smith 86447c6ae99SBarry Smith Level: advanced 86547c6ae99SBarry Smith 86647c6ae99SBarry Smith Notes: 86747c6ae99SBarry Smith The is entries should be destroyed with ISDestroy(), the is array should be freed with PetscFree() 86847c6ae99SBarry Smith 86947c6ae99SBarry Smith These could be used to extract a subset of vector entries for a "multi-physics" preconditioner 87047c6ae99SBarry Smith 8716eb61c8cSJed Brown Use DMCompositeGetLocalISs() for index sets in the packed local numbering, and 8726eb61c8cSJed Brown DMCompositeGetISLocalToGlobalMappings() for to map local sub-DM (including ghost) indices to packed global 8736eb61c8cSJed Brown indices. 87447c6ae99SBarry Smith 8759ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 87647c6ae99SBarry Smith DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 87747c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 87847c6ae99SBarry Smith 87947c6ae99SBarry Smith @*/ 8806eb61c8cSJed Brown 8817087cfbeSBarry Smith PetscErrorCode DMCompositeGetGlobalISs(DM dm,IS *is[]) 88247c6ae99SBarry Smith { 88347c6ae99SBarry Smith PetscErrorCode ierr; 88466bb578eSMark Adams PetscInt cnt = 0; 88547c6ae99SBarry Smith struct DMCompositeLink *next; 88647c6ae99SBarry Smith PetscMPIInt rank; 88747c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 88847c6ae99SBarry Smith 88947c6ae99SBarry Smith PetscFunctionBegin; 89047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 891854ce69bSBarry Smith ierr = PetscMalloc1(com->nDM,is);CHKERRQ(ierr); 89247c6ae99SBarry Smith next = com->next; 893ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 89447c6ae99SBarry Smith 89547c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 89647c6ae99SBarry Smith while (next) { 89766bb578eSMark Adams ierr = ISCreateStride(PetscObjectComm((PetscObject)dm),next->n,next->grstart,1,&(*is)[cnt]);CHKERRQ(ierr); 8980f21e855SMatthew G. Knepley if (dm->prob) { 89965c226d8SMatthew G. Knepley MatNullSpace space; 90065c226d8SMatthew G. Knepley Mat pmat; 9010f21e855SMatthew G. Knepley PetscObject disc; 9020f21e855SMatthew G. Knepley PetscInt Nf; 90365c226d8SMatthew G. Knepley 9042764a2aaSMatthew G. Knepley ierr = PetscDSGetNumFields(dm->prob, &Nf);CHKERRQ(ierr); 905f24dd8d2SMatthew G. Knepley if (cnt < Nf) { 9062764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(dm->prob, cnt, &disc);CHKERRQ(ierr); 9070f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "nullspace", (PetscObject*) &space);CHKERRQ(ierr); 908aac2dd2dSMatthew G. Knepley if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nullspace", (PetscObject) space);CHKERRQ(ierr);} 9090f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "nearnullspace", (PetscObject*) &space);CHKERRQ(ierr); 910aac2dd2dSMatthew G. Knepley if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nearnullspace", (PetscObject) space);CHKERRQ(ierr);} 9110f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "pmat", (PetscObject*) &pmat);CHKERRQ(ierr); 912aac2dd2dSMatthew G. Knepley if (pmat) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "pmat", (PetscObject) pmat);CHKERRQ(ierr);} 91365c226d8SMatthew G. Knepley } 914f24dd8d2SMatthew G. Knepley } 91547c6ae99SBarry Smith cnt++; 91647c6ae99SBarry Smith next = next->next; 91747c6ae99SBarry Smith } 91847c6ae99SBarry Smith PetscFunctionReturn(0); 91947c6ae99SBarry Smith } 92047c6ae99SBarry Smith 9214d343eeaSMatthew G Knepley #undef __FUNCT__ 9224d343eeaSMatthew G Knepley #define __FUNCT__ "DMCreateFieldIS_Composite" 92321c9b008SJed Brown PetscErrorCode DMCreateFieldIS_Composite(DM dm, PetscInt *numFields,char ***fieldNames, IS **fields) 9244d343eeaSMatthew G Knepley { 9254d343eeaSMatthew G Knepley PetscInt nDM; 9264d343eeaSMatthew G Knepley DM *dms; 9274d343eeaSMatthew G Knepley PetscInt i; 9284d343eeaSMatthew G Knepley PetscErrorCode ierr; 9294d343eeaSMatthew G Knepley 9304d343eeaSMatthew G Knepley PetscFunctionBegin; 9314d343eeaSMatthew G Knepley ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 9328865f1eaSKarl Rupp if (numFields) *numFields = nDM; 9334d343eeaSMatthew G Knepley ierr = DMCompositeGetGlobalISs(dm, fields);CHKERRQ(ierr); 9344d343eeaSMatthew G Knepley if (fieldNames) { 935785e854fSJed Brown ierr = PetscMalloc1(nDM, &dms);CHKERRQ(ierr); 936785e854fSJed Brown ierr = PetscMalloc1(nDM, fieldNames);CHKERRQ(ierr); 9374d343eeaSMatthew G Knepley ierr = DMCompositeGetEntriesArray(dm, dms);CHKERRQ(ierr); 9384d343eeaSMatthew G Knepley for (i=0; i<nDM; i++) { 9394d343eeaSMatthew G Knepley char buf[256]; 9404d343eeaSMatthew G Knepley const char *splitname; 9414d343eeaSMatthew G Knepley 9424d343eeaSMatthew G Knepley /* Split naming precedence: object name, prefix, number */ 9434d343eeaSMatthew G Knepley splitname = ((PetscObject) dm)->name; 9444d343eeaSMatthew G Knepley if (!splitname) { 9454d343eeaSMatthew G Knepley ierr = PetscObjectGetOptionsPrefix((PetscObject)dms[i],&splitname);CHKERRQ(ierr); 9464d343eeaSMatthew G Knepley if (splitname) { 9474d343eeaSMatthew G Knepley size_t len; 9488caf3d72SBarry Smith ierr = PetscStrncpy(buf,splitname,sizeof(buf));CHKERRQ(ierr); 9498caf3d72SBarry Smith buf[sizeof(buf) - 1] = 0; 9504d343eeaSMatthew G Knepley ierr = PetscStrlen(buf,&len);CHKERRQ(ierr); 9514d343eeaSMatthew G Knepley if (buf[len-1] == '_') buf[len-1] = 0; /* Remove trailing underscore if it was used */ 9524d343eeaSMatthew G Knepley splitname = buf; 9534d343eeaSMatthew G Knepley } 9544d343eeaSMatthew G Knepley } 9554d343eeaSMatthew G Knepley if (!splitname) { 9568caf3d72SBarry Smith ierr = PetscSNPrintf(buf,sizeof(buf),"%D",i);CHKERRQ(ierr); 9574d343eeaSMatthew G Knepley splitname = buf; 9584d343eeaSMatthew G Knepley } 95921c9b008SJed Brown ierr = PetscStrallocpy(splitname,&(*fieldNames)[i]);CHKERRQ(ierr); 9604d343eeaSMatthew G Knepley } 9614d343eeaSMatthew G Knepley ierr = PetscFree(dms);CHKERRQ(ierr); 9624d343eeaSMatthew G Knepley } 9634d343eeaSMatthew G Knepley PetscFunctionReturn(0); 9644d343eeaSMatthew G Knepley } 9654d343eeaSMatthew G Knepley 966e7c4fc90SDmitry Karpeev /* 967e7c4fc90SDmitry Karpeev This could take over from DMCreateFieldIS(), as it is more general, 9680298fd71SBarry Smith making DMCreateFieldIS() a special case -- calling with dmlist == NULL; 969e7c4fc90SDmitry Karpeev At this point it's probably best to be less intrusive, however. 970e7c4fc90SDmitry Karpeev */ 971e7c4fc90SDmitry Karpeev #undef __FUNCT__ 97216621825SDmitry Karpeev #define __FUNCT__ "DMCreateFieldDecomposition_Composite" 97316621825SDmitry Karpeev PetscErrorCode DMCreateFieldDecomposition_Composite(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 974e7c4fc90SDmitry Karpeev { 975e7c4fc90SDmitry Karpeev PetscInt nDM; 976e7c4fc90SDmitry Karpeev PetscInt i; 977e7c4fc90SDmitry Karpeev PetscErrorCode ierr; 978e7c4fc90SDmitry Karpeev 979e7c4fc90SDmitry Karpeev PetscFunctionBegin; 980e7c4fc90SDmitry Karpeev ierr = DMCreateFieldIS_Composite(dm, len, namelist, islist);CHKERRQ(ierr); 981e7c4fc90SDmitry Karpeev if (dmlist) { 982e7c4fc90SDmitry Karpeev ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 983785e854fSJed Brown ierr = PetscMalloc1(nDM, dmlist);CHKERRQ(ierr); 984e7c4fc90SDmitry Karpeev ierr = DMCompositeGetEntriesArray(dm, *dmlist);CHKERRQ(ierr); 985e7c4fc90SDmitry Karpeev for (i=0; i<nDM; i++) { 986e7c4fc90SDmitry Karpeev ierr = PetscObjectReference((PetscObject)((*dmlist)[i]));CHKERRQ(ierr); 987e7c4fc90SDmitry Karpeev } 988e7c4fc90SDmitry Karpeev } 989e7c4fc90SDmitry Karpeev PetscFunctionReturn(0); 990e7c4fc90SDmitry Karpeev } 991e7c4fc90SDmitry Karpeev 992e7c4fc90SDmitry Karpeev 993e7c4fc90SDmitry Karpeev 99447c6ae99SBarry Smith /* -------------------------------------------------------------------------------------*/ 99547c6ae99SBarry Smith #undef __FUNCT__ 99647c6ae99SBarry Smith #define __FUNCT__ "DMCompositeGetLocalVectors" 99747c6ae99SBarry Smith /*@C 9989ae5db72SJed Brown DMCompositeGetLocalVectors - Gets local vectors for each part of a DMComposite. 99947c6ae99SBarry Smith Use DMCompositeRestoreLocalVectors() to return them. 100047c6ae99SBarry Smith 100147c6ae99SBarry Smith Not Collective 100247c6ae99SBarry Smith 100347c6ae99SBarry Smith Input Parameter: 100447c6ae99SBarry Smith . dm - the packer object 100547c6ae99SBarry Smith 100647c6ae99SBarry Smith Output Parameter: 10079ae5db72SJed Brown . Vec ... - the individual sequential Vecs 100847c6ae99SBarry Smith 100947c6ae99SBarry Smith Level: advanced 101047c6ae99SBarry Smith 10119ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 10126eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 101347c6ae99SBarry Smith DMCompositeRestoreLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 101447c6ae99SBarry Smith 101547c6ae99SBarry Smith @*/ 10167087cfbeSBarry Smith PetscErrorCode DMCompositeGetLocalVectors(DM dm,...) 101747c6ae99SBarry Smith { 101847c6ae99SBarry Smith va_list Argp; 101947c6ae99SBarry Smith PetscErrorCode ierr; 102047c6ae99SBarry Smith struct DMCompositeLink *next; 102147c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 102247c6ae99SBarry Smith 102347c6ae99SBarry Smith PetscFunctionBegin; 102447c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 102547c6ae99SBarry Smith next = com->next; 102647c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 102747c6ae99SBarry Smith va_start(Argp,dm); 102847c6ae99SBarry Smith while (next) { 102947c6ae99SBarry Smith Vec *vec; 103047c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 103106930112SJed Brown if (vec) {ierr = DMGetLocalVector(next->dm,vec);CHKERRQ(ierr);} 103247c6ae99SBarry Smith next = next->next; 103347c6ae99SBarry Smith } 103447c6ae99SBarry Smith va_end(Argp); 103547c6ae99SBarry Smith PetscFunctionReturn(0); 103647c6ae99SBarry Smith } 103747c6ae99SBarry Smith 103847c6ae99SBarry Smith #undef __FUNCT__ 103947c6ae99SBarry Smith #define __FUNCT__ "DMCompositeRestoreLocalVectors" 104047c6ae99SBarry Smith /*@C 10419ae5db72SJed Brown DMCompositeRestoreLocalVectors - Restores local vectors for each part of a DMComposite. 104247c6ae99SBarry Smith 104347c6ae99SBarry Smith Not Collective 104447c6ae99SBarry Smith 104547c6ae99SBarry Smith Input Parameter: 104647c6ae99SBarry Smith . dm - the packer object 104747c6ae99SBarry Smith 104847c6ae99SBarry Smith Output Parameter: 10499ae5db72SJed Brown . Vec ... - the individual sequential Vecs 105047c6ae99SBarry Smith 105147c6ae99SBarry Smith Level: advanced 105247c6ae99SBarry Smith 10539ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 10546eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 105547c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 105647c6ae99SBarry Smith 105747c6ae99SBarry Smith @*/ 10587087cfbeSBarry Smith PetscErrorCode DMCompositeRestoreLocalVectors(DM dm,...) 105947c6ae99SBarry Smith { 106047c6ae99SBarry Smith va_list Argp; 106147c6ae99SBarry Smith PetscErrorCode ierr; 106247c6ae99SBarry Smith struct DMCompositeLink *next; 106347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 106447c6ae99SBarry Smith 106547c6ae99SBarry Smith PetscFunctionBegin; 106647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 106747c6ae99SBarry Smith next = com->next; 106847c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 106947c6ae99SBarry Smith va_start(Argp,dm); 107047c6ae99SBarry Smith while (next) { 107147c6ae99SBarry Smith Vec *vec; 107247c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 107306930112SJed Brown if (vec) {ierr = DMRestoreLocalVector(next->dm,vec);CHKERRQ(ierr);} 107447c6ae99SBarry Smith next = next->next; 107547c6ae99SBarry Smith } 107647c6ae99SBarry Smith va_end(Argp); 107747c6ae99SBarry Smith PetscFunctionReturn(0); 107847c6ae99SBarry Smith } 107947c6ae99SBarry Smith 108047c6ae99SBarry Smith /* -------------------------------------------------------------------------------------*/ 108147c6ae99SBarry Smith #undef __FUNCT__ 108247c6ae99SBarry Smith #define __FUNCT__ "DMCompositeGetEntries" 108347c6ae99SBarry Smith /*@C 10849ae5db72SJed Brown DMCompositeGetEntries - Gets the DM for each entry in a DMComposite. 108547c6ae99SBarry Smith 108647c6ae99SBarry Smith Not Collective 108747c6ae99SBarry Smith 108847c6ae99SBarry Smith Input Parameter: 108947c6ae99SBarry Smith . dm - the packer object 109047c6ae99SBarry Smith 109147c6ae99SBarry Smith Output Parameter: 10929ae5db72SJed Brown . DM ... - the individual entries (DMs) 109347c6ae99SBarry Smith 109447c6ae99SBarry Smith Level: advanced 109547c6ae99SBarry Smith 10962fa5ba8aSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntriesArray() 10976eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 109847c6ae99SBarry Smith DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 109947c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 110047c6ae99SBarry Smith 110147c6ae99SBarry Smith @*/ 11027087cfbeSBarry Smith PetscErrorCode DMCompositeGetEntries(DM dm,...) 110347c6ae99SBarry Smith { 110447c6ae99SBarry Smith va_list Argp; 110547c6ae99SBarry Smith struct DMCompositeLink *next; 110647c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 110747c6ae99SBarry Smith 110847c6ae99SBarry Smith PetscFunctionBegin; 110947c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 111047c6ae99SBarry Smith next = com->next; 111147c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 111247c6ae99SBarry Smith va_start(Argp,dm); 111347c6ae99SBarry Smith while (next) { 111447c6ae99SBarry Smith DM *dmn; 111547c6ae99SBarry Smith dmn = va_arg(Argp, DM*); 11169ae5db72SJed Brown if (dmn) *dmn = next->dm; 111747c6ae99SBarry Smith next = next->next; 111847c6ae99SBarry Smith } 111947c6ae99SBarry Smith va_end(Argp); 112047c6ae99SBarry Smith PetscFunctionReturn(0); 112147c6ae99SBarry Smith } 112247c6ae99SBarry Smith 112347c6ae99SBarry Smith #undef __FUNCT__ 11242fa5ba8aSJed Brown #define __FUNCT__ "DMCompositeGetEntriesArray" 1125dbab29e1SMark F. Adams /*@C 11262fa5ba8aSJed Brown DMCompositeGetEntriesArray - Gets the DM for each entry in a DMComposite. 11272fa5ba8aSJed Brown 11282fa5ba8aSJed Brown Not Collective 11292fa5ba8aSJed Brown 11302fa5ba8aSJed Brown Input Parameter: 1131*907376e6SBarry Smith . dm - the packer object 1132*907376e6SBarry Smith 1133*907376e6SBarry Smith Output Parameter: 1134*907376e6SBarry Smith . dms - array of sufficient length (see DMCompositeGetNumberDM()) to hold the individual DMs 11352fa5ba8aSJed Brown 11362fa5ba8aSJed Brown Level: advanced 11372fa5ba8aSJed Brown 11382fa5ba8aSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntries() 11392fa5ba8aSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 11402fa5ba8aSJed Brown DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 11412fa5ba8aSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 11422fa5ba8aSJed Brown 11432fa5ba8aSJed Brown @*/ 11442fa5ba8aSJed Brown PetscErrorCode DMCompositeGetEntriesArray(DM dm,DM dms[]) 11452fa5ba8aSJed Brown { 11462fa5ba8aSJed Brown struct DMCompositeLink *next; 11472fa5ba8aSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 11482fa5ba8aSJed Brown PetscInt i; 11492fa5ba8aSJed Brown 11502fa5ba8aSJed Brown PetscFunctionBegin; 11512fa5ba8aSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 11522fa5ba8aSJed Brown /* loop over packed objects, handling one at at time */ 11532fa5ba8aSJed Brown for (next=com->next,i=0; next; next=next->next,i++) dms[i] = next->dm; 11542fa5ba8aSJed Brown PetscFunctionReturn(0); 11552fa5ba8aSJed Brown } 11562fa5ba8aSJed Brown 11572fa5ba8aSJed Brown #undef __FUNCT__ 11580c010503SBarry Smith #define __FUNCT__ "DMRefine_Composite" 11597087cfbeSBarry Smith PetscErrorCode DMRefine_Composite(DM dmi,MPI_Comm comm,DM *fine) 116047c6ae99SBarry Smith { 116147c6ae99SBarry Smith PetscErrorCode ierr; 116247c6ae99SBarry Smith struct DMCompositeLink *next; 116347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dmi->data; 116447c6ae99SBarry Smith DM dm; 116547c6ae99SBarry Smith 116647c6ae99SBarry Smith PetscFunctionBegin; 116747c6ae99SBarry Smith PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1168ce94432eSBarry Smith if (comm == MPI_COMM_NULL) { 1169ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1170ce94432eSBarry Smith } 11712ce3a92bSJed Brown ierr = DMSetUp(dmi);CHKERRQ(ierr); 117247c6ae99SBarry Smith next = com->next; 117347c6ae99SBarry Smith ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 117447c6ae99SBarry Smith 117547c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 117647c6ae99SBarry Smith while (next) { 117747c6ae99SBarry Smith ierr = DMRefine(next->dm,comm,&dm);CHKERRQ(ierr); 117847c6ae99SBarry Smith ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 117947c6ae99SBarry Smith ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 118047c6ae99SBarry Smith next = next->next; 118147c6ae99SBarry Smith } 118247c6ae99SBarry Smith PetscFunctionReturn(0); 118347c6ae99SBarry Smith } 118447c6ae99SBarry Smith 118514354c39SJed Brown #undef __FUNCT__ 118614354c39SJed Brown #define __FUNCT__ "DMCoarsen_Composite" 118714354c39SJed Brown PetscErrorCode DMCoarsen_Composite(DM dmi,MPI_Comm comm,DM *fine) 118814354c39SJed Brown { 118914354c39SJed Brown PetscErrorCode ierr; 119014354c39SJed Brown struct DMCompositeLink *next; 119114354c39SJed Brown DM_Composite *com = (DM_Composite*)dmi->data; 119214354c39SJed Brown DM dm; 119314354c39SJed Brown 119414354c39SJed Brown PetscFunctionBegin; 119514354c39SJed Brown PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 11962ce3a92bSJed Brown ierr = DMSetUp(dmi);CHKERRQ(ierr); 11972ee06e3bSJed Brown if (comm == MPI_COMM_NULL) { 119825296bd5SBarry Smith ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 119925296bd5SBarry Smith } 120014354c39SJed Brown next = com->next; 120114354c39SJed Brown ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 120214354c39SJed Brown 120314354c39SJed Brown /* loop over packed objects, handling one at at time */ 120414354c39SJed Brown while (next) { 120514354c39SJed Brown ierr = DMCoarsen(next->dm,comm,&dm);CHKERRQ(ierr); 120614354c39SJed Brown ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 120714354c39SJed Brown ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 120814354c39SJed Brown next = next->next; 120914354c39SJed Brown } 121014354c39SJed Brown PetscFunctionReturn(0); 121114354c39SJed Brown } 121247c6ae99SBarry Smith 121347c6ae99SBarry Smith #undef __FUNCT__ 1214e727c939SJed Brown #define __FUNCT__ "DMCreateInterpolation_Composite" 1215e727c939SJed Brown PetscErrorCode DMCreateInterpolation_Composite(DM coarse,DM fine,Mat *A,Vec *v) 121647c6ae99SBarry Smith { 121747c6ae99SBarry Smith PetscErrorCode ierr; 12189ae5db72SJed Brown PetscInt m,n,M,N,nDM,i; 121947c6ae99SBarry Smith struct DMCompositeLink *nextc; 122047c6ae99SBarry Smith struct DMCompositeLink *nextf; 122125296bd5SBarry Smith Vec gcoarse,gfine,*vecs; 122247c6ae99SBarry Smith DM_Composite *comcoarse = (DM_Composite*)coarse->data; 122347c6ae99SBarry Smith DM_Composite *comfine = (DM_Composite*)fine->data; 12249ae5db72SJed Brown Mat *mats; 122547c6ae99SBarry Smith 122647c6ae99SBarry Smith PetscFunctionBegin; 122747c6ae99SBarry Smith PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 122847c6ae99SBarry Smith PetscValidHeaderSpecific(fine,DM_CLASSID,2); 1229f692024eSJed Brown ierr = DMSetUp(coarse);CHKERRQ(ierr); 1230f692024eSJed Brown ierr = DMSetUp(fine);CHKERRQ(ierr); 123147c6ae99SBarry Smith /* use global vectors only for determining matrix layout */ 12329ae5db72SJed Brown ierr = DMGetGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 12339ae5db72SJed Brown ierr = DMGetGlobalVector(fine,&gfine);CHKERRQ(ierr); 123447c6ae99SBarry Smith ierr = VecGetLocalSize(gcoarse,&n);CHKERRQ(ierr); 123547c6ae99SBarry Smith ierr = VecGetLocalSize(gfine,&m);CHKERRQ(ierr); 123647c6ae99SBarry Smith ierr = VecGetSize(gcoarse,&N);CHKERRQ(ierr); 123747c6ae99SBarry Smith ierr = VecGetSize(gfine,&M);CHKERRQ(ierr); 12389ae5db72SJed Brown ierr = DMRestoreGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 12399ae5db72SJed Brown ierr = DMRestoreGlobalVector(fine,&gfine);CHKERRQ(ierr); 124047c6ae99SBarry Smith 12419ae5db72SJed Brown nDM = comfine->nDM; 1242ce94432eSBarry Smith if (nDM != comcoarse->nDM) SETERRQ2(PetscObjectComm((PetscObject)fine),PETSC_ERR_ARG_INCOMP,"Fine DMComposite has %D entries, but coarse has %D",nDM,comcoarse->nDM); 12431795a4d1SJed Brown ierr = PetscCalloc1(nDM*nDM,&mats);CHKERRQ(ierr); 124425296bd5SBarry Smith if (v) { 12451795a4d1SJed Brown ierr = PetscCalloc1(nDM,&vecs);CHKERRQ(ierr); 124625296bd5SBarry Smith } 124747c6ae99SBarry Smith 124847c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 12499ae5db72SJed Brown for (nextc=comcoarse->next,nextf=comfine->next,i=0; nextc; nextc=nextc->next,nextf=nextf->next,i++) { 125025296bd5SBarry Smith if (!v) { 12510298fd71SBarry Smith ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],NULL);CHKERRQ(ierr); 125225296bd5SBarry Smith } else { 125325296bd5SBarry Smith ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],&vecs[i]);CHKERRQ(ierr); 125425296bd5SBarry Smith } 125547c6ae99SBarry Smith } 1256ce94432eSBarry Smith ierr = MatCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,nDM,NULL,mats,A);CHKERRQ(ierr); 125725296bd5SBarry Smith if (v) { 1258ce94432eSBarry Smith ierr = VecCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,vecs,v);CHKERRQ(ierr); 125925296bd5SBarry Smith } 12609ae5db72SJed Brown for (i=0; i<nDM*nDM; i++) {ierr = MatDestroy(&mats[i]);CHKERRQ(ierr);} 12619ae5db72SJed Brown ierr = PetscFree(mats);CHKERRQ(ierr); 126225296bd5SBarry Smith if (v) { 126325296bd5SBarry Smith for (i=0; i<nDM; i++) {ierr = VecDestroy(&vecs[i]);CHKERRQ(ierr);} 126425296bd5SBarry Smith ierr = PetscFree(vecs);CHKERRQ(ierr); 126525296bd5SBarry Smith } 126647c6ae99SBarry Smith PetscFunctionReturn(0); 126747c6ae99SBarry Smith } 126847c6ae99SBarry Smith 126947c6ae99SBarry Smith #undef __FUNCT__ 1270184d77edSJed Brown #define __FUNCT__ "DMGetLocalToGlobalMapping_Composite" 1271184d77edSJed Brown static PetscErrorCode DMGetLocalToGlobalMapping_Composite(DM dm) 12721411c6eeSJed Brown { 12731411c6eeSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 12741411c6eeSJed Brown ISLocalToGlobalMapping *ltogs; 1275f7efa3c7SJed Brown PetscInt i; 12761411c6eeSJed Brown PetscErrorCode ierr; 12771411c6eeSJed Brown 12781411c6eeSJed Brown PetscFunctionBegin; 12791411c6eeSJed Brown /* Set the ISLocalToGlobalMapping on the new matrix */ 12801411c6eeSJed Brown ierr = DMCompositeGetISLocalToGlobalMappings(dm,<ogs);CHKERRQ(ierr); 1281ce94432eSBarry Smith ierr = ISLocalToGlobalMappingConcatenate(PetscObjectComm((PetscObject)dm),com->nDM,ltogs,&dm->ltogmap);CHKERRQ(ierr); 12829ae5db72SJed Brown for (i=0; i<com->nDM; i++) {ierr = ISLocalToGlobalMappingDestroy(<ogs[i]);CHKERRQ(ierr);} 12831411c6eeSJed Brown ierr = PetscFree(ltogs);CHKERRQ(ierr); 12841411c6eeSJed Brown PetscFunctionReturn(0); 12851411c6eeSJed Brown } 12861411c6eeSJed Brown 12871411c6eeSJed Brown 12881411c6eeSJed Brown #undef __FUNCT__ 1289e727c939SJed Brown #define __FUNCT__ "DMCreateColoring_Composite" 1290b412c318SBarry Smith PetscErrorCode DMCreateColoring_Composite(DM dm,ISColoringType ctype,ISColoring *coloring) 129147c6ae99SBarry Smith { 129247c6ae99SBarry Smith PetscErrorCode ierr; 129347c6ae99SBarry Smith PetscInt n,i,cnt; 129447c6ae99SBarry Smith ISColoringValue *colors; 129547c6ae99SBarry Smith PetscBool dense = PETSC_FALSE; 129647c6ae99SBarry Smith ISColoringValue maxcol = 0; 129747c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 129847c6ae99SBarry Smith 129947c6ae99SBarry Smith PetscFunctionBegin; 130047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1301ce94432eSBarry Smith if (ctype == IS_COLORING_GHOSTED) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Only global coloring supported"); 1302e3247f34SBarry Smith else if (ctype == IS_COLORING_GLOBAL) { 130347c6ae99SBarry Smith n = com->n; 1304ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Unknown ISColoringType"); 1305785e854fSJed Brown ierr = PetscMalloc1(n,&colors);CHKERRQ(ierr); /* freed in ISColoringDestroy() */ 130647c6ae99SBarry Smith 13070298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-dmcomposite_dense_jacobian",&dense,NULL);CHKERRQ(ierr); 130847c6ae99SBarry Smith if (dense) { 130947c6ae99SBarry Smith for (i=0; i<n; i++) { 131047c6ae99SBarry Smith colors[i] = (ISColoringValue)(com->rstart + i); 131147c6ae99SBarry Smith } 131247c6ae99SBarry Smith maxcol = com->N; 131347c6ae99SBarry Smith } else { 131447c6ae99SBarry Smith struct DMCompositeLink *next = com->next; 131547c6ae99SBarry Smith PetscMPIInt rank; 131647c6ae99SBarry Smith 1317ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 131847c6ae99SBarry Smith cnt = 0; 131947c6ae99SBarry Smith while (next) { 132047c6ae99SBarry Smith ISColoring lcoloring; 132147c6ae99SBarry Smith 1322b412c318SBarry Smith ierr = DMCreateColoring(next->dm,IS_COLORING_GLOBAL,&lcoloring);CHKERRQ(ierr); 132347c6ae99SBarry Smith for (i=0; i<lcoloring->N; i++) { 132447c6ae99SBarry Smith colors[cnt++] = maxcol + lcoloring->colors[i]; 132547c6ae99SBarry Smith } 132647c6ae99SBarry Smith maxcol += lcoloring->n; 1327fcfd50ebSBarry Smith ierr = ISColoringDestroy(&lcoloring);CHKERRQ(ierr); 132847c6ae99SBarry Smith next = next->next; 132947c6ae99SBarry Smith } 133047c6ae99SBarry Smith } 1331aaf3ff59SMatthew G. Knepley ierr = ISColoringCreate(PetscObjectComm((PetscObject)dm),maxcol,n,colors,PETSC_OWN_POINTER,coloring);CHKERRQ(ierr); 133247c6ae99SBarry Smith PetscFunctionReturn(0); 133347c6ae99SBarry Smith } 133447c6ae99SBarry Smith 133547c6ae99SBarry Smith #undef __FUNCT__ 13360c010503SBarry Smith #define __FUNCT__ "DMGlobalToLocalBegin_Composite" 13377087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalBegin_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 133847c6ae99SBarry Smith { 133947c6ae99SBarry Smith PetscErrorCode ierr; 134047c6ae99SBarry Smith struct DMCompositeLink *next; 134147c6ae99SBarry Smith PetscInt cnt = 3; 134247c6ae99SBarry Smith PetscMPIInt rank; 134347c6ae99SBarry Smith PetscScalar *garray,*larray; 134447c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 134547c6ae99SBarry Smith 134647c6ae99SBarry Smith PetscFunctionBegin; 134747c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 134847c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 134947c6ae99SBarry Smith next = com->next; 135047c6ae99SBarry Smith if (!com->setup) { 1351d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 135247c6ae99SBarry Smith } 1353ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 135447c6ae99SBarry Smith ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 135547c6ae99SBarry Smith ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 135647c6ae99SBarry Smith 135747c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 135847c6ae99SBarry Smith while (next) { 135947c6ae99SBarry Smith Vec local,global; 136047c6ae99SBarry Smith PetscInt N; 136147c6ae99SBarry Smith 136247c6ae99SBarry Smith ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 136347c6ae99SBarry Smith ierr = VecGetLocalSize(global,&N);CHKERRQ(ierr); 136447c6ae99SBarry Smith ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 136547c6ae99SBarry Smith ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 136647c6ae99SBarry Smith ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 136747c6ae99SBarry Smith ierr = DMGlobalToLocalBegin(next->dm,global,mode,local);CHKERRQ(ierr); 136847c6ae99SBarry Smith ierr = DMGlobalToLocalEnd(next->dm,global,mode,local);CHKERRQ(ierr); 136947c6ae99SBarry Smith ierr = VecResetArray(global);CHKERRQ(ierr); 137047c6ae99SBarry Smith ierr = VecResetArray(local);CHKERRQ(ierr); 137147c6ae99SBarry Smith ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 137247c6ae99SBarry Smith ierr = DMRestoreGlobalVector(next->dm,&local);CHKERRQ(ierr); 137347c6ae99SBarry Smith cnt++; 137406ebdd98SJed Brown larray += next->nlocal; 137547c6ae99SBarry Smith next = next->next; 137647c6ae99SBarry Smith } 137747c6ae99SBarry Smith 13780298fd71SBarry Smith ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 13790298fd71SBarry Smith ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 138047c6ae99SBarry Smith PetscFunctionReturn(0); 138147c6ae99SBarry Smith } 138247c6ae99SBarry Smith 138347c6ae99SBarry Smith #undef __FUNCT__ 13840c010503SBarry Smith #define __FUNCT__ "DMGlobalToLocalEnd_Composite" 13857087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalEnd_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 13860c010503SBarry Smith { 13870c010503SBarry Smith PetscFunctionBegin; 13880c010503SBarry Smith PetscFunctionReturn(0); 13890c010503SBarry Smith } 139047c6ae99SBarry Smith 13916ae3a549SBarry Smith /*MC 13926ae3a549SBarry Smith DMCOMPOSITE = "composite" - A DM object that is used to manage data for a collection of DMs 13936ae3a549SBarry Smith 13946ae3a549SBarry Smith Level: intermediate 13956ae3a549SBarry Smith 13961abcec8cSBarry Smith .seealso: DMType, DM, DMDACreate(), DMCreate(), DMSetType(), DMCompositeCreate() 13976ae3a549SBarry Smith M*/ 13986ae3a549SBarry Smith 13996ae3a549SBarry Smith 1400a4121054SBarry Smith #undef __FUNCT__ 1401a4121054SBarry Smith #define __FUNCT__ "DMCreate_Composite" 14028cc058d9SJed Brown PETSC_EXTERN PetscErrorCode DMCreate_Composite(DM p) 1403a4121054SBarry Smith { 1404a4121054SBarry Smith PetscErrorCode ierr; 1405a4121054SBarry Smith DM_Composite *com; 1406a4121054SBarry Smith 1407a4121054SBarry Smith PetscFunctionBegin; 1408b00a9115SJed Brown ierr = PetscNewLog(p,&com);CHKERRQ(ierr); 1409a4121054SBarry Smith p->data = com; 1410a4121054SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)p,"DMComposite");CHKERRQ(ierr); 1411a4121054SBarry Smith com->n = 0; 14120298fd71SBarry Smith com->next = NULL; 1413a4121054SBarry Smith com->nDM = 0; 1414a4121054SBarry Smith 1415a4121054SBarry Smith p->ops->createglobalvector = DMCreateGlobalVector_Composite; 1416a4121054SBarry Smith p->ops->createlocalvector = DMCreateLocalVector_Composite; 1417184d77edSJed Brown p->ops->getlocaltoglobalmapping = DMGetLocalToGlobalMapping_Composite; 14184d343eeaSMatthew G Knepley p->ops->createfieldis = DMCreateFieldIS_Composite; 141916621825SDmitry Karpeev p->ops->createfielddecomposition = DMCreateFieldDecomposition_Composite; 1420a4121054SBarry Smith p->ops->refine = DMRefine_Composite; 142114354c39SJed Brown p->ops->coarsen = DMCoarsen_Composite; 142225296bd5SBarry Smith p->ops->createinterpolation = DMCreateInterpolation_Composite; 142325296bd5SBarry Smith p->ops->creatematrix = DMCreateMatrix_Composite; 1424e727c939SJed Brown p->ops->getcoloring = DMCreateColoring_Composite; 1425a4121054SBarry Smith p->ops->globaltolocalbegin = DMGlobalToLocalBegin_Composite; 1426a4121054SBarry Smith p->ops->globaltolocalend = DMGlobalToLocalEnd_Composite; 1427a4121054SBarry Smith p->ops->destroy = DMDestroy_Composite; 1428a4121054SBarry Smith p->ops->view = DMView_Composite; 1429a4121054SBarry Smith p->ops->setup = DMSetUp_Composite; 1430a4121054SBarry Smith PetscFunctionReturn(0); 1431a4121054SBarry Smith } 1432a4121054SBarry Smith 14330c010503SBarry Smith #undef __FUNCT__ 14340c010503SBarry Smith #define __FUNCT__ "DMCompositeCreate" 14350c010503SBarry Smith /*@C 14360c010503SBarry Smith DMCompositeCreate - Creates a vector packer, used to generate "composite" 14370c010503SBarry Smith vectors made up of several subvectors. 14380c010503SBarry Smith 14390c010503SBarry Smith Collective on MPI_Comm 144047c6ae99SBarry Smith 144147c6ae99SBarry Smith Input Parameter: 14420c010503SBarry Smith . comm - the processors that will share the global vector 14430c010503SBarry Smith 14440c010503SBarry Smith Output Parameters: 14450c010503SBarry Smith . packer - the packer object 144647c6ae99SBarry Smith 144747c6ae99SBarry Smith Level: advanced 144847c6ae99SBarry Smith 14491abcec8cSBarry Smith .seealso DMDestroy(), DMCompositeAddDM(), DMCompositeScatter(), DMCOMPOSITE,DMCreate() 14506eb61c8cSJed Brown DMCompositeGather(), DMCreateGlobalVector(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess() 145147c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 145247c6ae99SBarry Smith 145347c6ae99SBarry Smith @*/ 14547087cfbeSBarry Smith PetscErrorCode DMCompositeCreate(MPI_Comm comm,DM *packer) 145547c6ae99SBarry Smith { 14560c010503SBarry Smith PetscErrorCode ierr; 14570c010503SBarry Smith 145847c6ae99SBarry Smith PetscFunctionBegin; 14590c010503SBarry Smith PetscValidPointer(packer,2); 1460a4121054SBarry Smith ierr = DMCreate(comm,packer);CHKERRQ(ierr); 1461a4121054SBarry Smith ierr = DMSetType(*packer,DMCOMPOSITE);CHKERRQ(ierr); 146247c6ae99SBarry Smith PetscFunctionReturn(0); 146347c6ae99SBarry Smith } 1464