147c6ae99SBarry Smith 2ccd284c7SBarry Smith #include <../src/dm/impls/composite/packimpl.h> /*I "petscdmcomposite.h" I*/ 3af0996ceSBarry Smith #include <petsc/private/isimpl.h> 4e10fd815SStefano Zampini #include <petsc/private/glvisviewerimpl.h> 52764a2aaSMatthew G. Knepley #include <petscds.h> 647c6ae99SBarry Smith 747c6ae99SBarry Smith /*@C 847c6ae99SBarry Smith DMCompositeSetCoupling - Sets user provided routines that compute the coupling between the 9bebe2cf6SSatish Balay separate components (DMs) in a DMto build the correct matrix nonzero structure. 1047c6ae99SBarry Smith 1147c6ae99SBarry Smith 12d083f849SBarry Smith Logically Collective 1347c6ae99SBarry Smith 1447c6ae99SBarry Smith Input Parameter: 1547c6ae99SBarry Smith + dm - the composite object 1647c6ae99SBarry Smith - formcouplelocations - routine to set the nonzero locations in the matrix 1747c6ae99SBarry Smith 1847c6ae99SBarry Smith Level: advanced 1947c6ae99SBarry Smith 20f5f57ec0SBarry Smith Not available from Fortran 21f5f57ec0SBarry Smith 2295452b02SPatrick Sanan Notes: 2395452b02SPatrick Sanan See DMSetApplicationContext() and DMGetApplicationContext() for how to get user information into 2447c6ae99SBarry Smith this routine 2547c6ae99SBarry Smith 2647c6ae99SBarry Smith @*/ 277087cfbeSBarry Smith PetscErrorCode DMCompositeSetCoupling(DM dm,PetscErrorCode (*FormCoupleLocations)(DM,Mat,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt,PetscInt)) 2847c6ae99SBarry Smith { 2947c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 3071b14b3eSStefano Zampini PetscBool flg; 3171b14b3eSStefano Zampini PetscErrorCode ierr; 3247c6ae99SBarry Smith 3347c6ae99SBarry Smith PetscFunctionBegin; 3471b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 3571b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 3647c6ae99SBarry Smith com->FormCoupleLocations = FormCoupleLocations; 3747c6ae99SBarry Smith PetscFunctionReturn(0); 3847c6ae99SBarry Smith } 3947c6ae99SBarry Smith 406bf464f9SBarry Smith PetscErrorCode DMDestroy_Composite(DM dm) 4147c6ae99SBarry Smith { 4247c6ae99SBarry Smith PetscErrorCode ierr; 4347c6ae99SBarry Smith struct DMCompositeLink *next, *prev; 4447c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 4547c6ae99SBarry Smith 4647c6ae99SBarry Smith PetscFunctionBegin; 4747c6ae99SBarry Smith next = com->next; 4847c6ae99SBarry Smith while (next) { 4947c6ae99SBarry Smith prev = next; 5047c6ae99SBarry Smith next = next->next; 51fcfd50ebSBarry Smith ierr = DMDestroy(&prev->dm);CHKERRQ(ierr); 5247c6ae99SBarry Smith ierr = PetscFree(prev->grstarts);CHKERRQ(ierr); 5347c6ae99SBarry Smith ierr = PetscFree(prev);CHKERRQ(ierr); 5447c6ae99SBarry Smith } 55e10fd815SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)dm,"DMSetUpGLVisViewer_C",NULL);CHKERRQ(ierr); 56435a35e8SMatthew G Knepley /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 57435a35e8SMatthew G Knepley ierr = PetscFree(com);CHKERRQ(ierr); 5847c6ae99SBarry Smith PetscFunctionReturn(0); 5947c6ae99SBarry Smith } 6047c6ae99SBarry Smith 617087cfbeSBarry Smith PetscErrorCode DMView_Composite(DM dm,PetscViewer v) 6247c6ae99SBarry Smith { 6347c6ae99SBarry Smith PetscErrorCode ierr; 6447c6ae99SBarry Smith PetscBool iascii; 6547c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 6647c6ae99SBarry Smith 6747c6ae99SBarry Smith PetscFunctionBegin; 68251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)v,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6947c6ae99SBarry Smith if (iascii) { 7047c6ae99SBarry Smith struct DMCompositeLink *lnk = com->next; 7147c6ae99SBarry Smith PetscInt i; 7247c6ae99SBarry Smith 7347c6ae99SBarry Smith ierr = PetscViewerASCIIPrintf(v,"DM (%s)\n",((PetscObject)dm)->prefix ? ((PetscObject)dm)->prefix : "no prefix");CHKERRQ(ierr); 749ae5db72SJed Brown ierr = PetscViewerASCIIPrintf(v," contains %D DMs\n",com->nDM);CHKERRQ(ierr); 7547c6ae99SBarry Smith ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 7647c6ae99SBarry Smith for (i=0; lnk; lnk=lnk->next,i++) { 779ae5db72SJed Brown ierr = PetscViewerASCIIPrintf(v,"Link %D: DM of type %s\n",i,((PetscObject)lnk->dm)->type_name);CHKERRQ(ierr); 7847c6ae99SBarry Smith ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 7947c6ae99SBarry Smith ierr = DMView(lnk->dm,v);CHKERRQ(ierr); 8047c6ae99SBarry Smith ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 8147c6ae99SBarry Smith } 8247c6ae99SBarry Smith ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 8347c6ae99SBarry Smith } 8447c6ae99SBarry Smith PetscFunctionReturn(0); 8547c6ae99SBarry Smith } 8647c6ae99SBarry Smith 8747c6ae99SBarry Smith /* --------------------------------------------------------------------------------------*/ 887087cfbeSBarry Smith PetscErrorCode DMSetUp_Composite(DM dm) 8947c6ae99SBarry Smith { 9047c6ae99SBarry Smith PetscErrorCode ierr; 9147c6ae99SBarry Smith PetscInt nprev = 0; 9247c6ae99SBarry Smith PetscMPIInt rank,size; 9347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 9447c6ae99SBarry Smith struct DMCompositeLink *next = com->next; 9547c6ae99SBarry Smith PetscLayout map; 9647c6ae99SBarry Smith 9747c6ae99SBarry Smith PetscFunctionBegin; 98ce94432eSBarry Smith if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Packer has already been setup"); 99ce94432eSBarry Smith ierr = PetscLayoutCreate(PetscObjectComm((PetscObject)dm),&map);CHKERRQ(ierr); 10047c6ae99SBarry Smith ierr = PetscLayoutSetLocalSize(map,com->n);CHKERRQ(ierr); 10147c6ae99SBarry Smith ierr = PetscLayoutSetSize(map,PETSC_DETERMINE);CHKERRQ(ierr); 10247c6ae99SBarry Smith ierr = PetscLayoutSetBlockSize(map,1);CHKERRQ(ierr); 10347c6ae99SBarry Smith ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 10447c6ae99SBarry Smith ierr = PetscLayoutGetSize(map,&com->N);CHKERRQ(ierr); 1050298fd71SBarry Smith ierr = PetscLayoutGetRange(map,&com->rstart,NULL);CHKERRQ(ierr); 106fcfd50ebSBarry Smith ierr = PetscLayoutDestroy(&map);CHKERRQ(ierr); 10747c6ae99SBarry Smith 1089ae5db72SJed Brown /* now set the rstart for each linked vector */ 109ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 110ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr); 11147c6ae99SBarry Smith while (next) { 11247c6ae99SBarry Smith next->rstart = nprev; 11306ebdd98SJed Brown nprev += next->n; 11447c6ae99SBarry Smith next->grstart = com->rstart + next->rstart; 115785e854fSJed Brown ierr = PetscMalloc1(size,&next->grstarts);CHKERRQ(ierr); 116ce94432eSBarry Smith ierr = MPI_Allgather(&next->grstart,1,MPIU_INT,next->grstarts,1,MPIU_INT,PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 11747c6ae99SBarry Smith next = next->next; 11847c6ae99SBarry Smith } 11947c6ae99SBarry Smith com->setup = PETSC_TRUE; 12047c6ae99SBarry Smith PetscFunctionReturn(0); 12147c6ae99SBarry Smith } 12247c6ae99SBarry Smith 12347c6ae99SBarry Smith /* ----------------------------------------------------------------------------------*/ 12447c6ae99SBarry Smith 12573e31fe2SJed Brown /*@ 12647c6ae99SBarry Smith DMCompositeGetNumberDM - Get's the number of DM objects in the DMComposite 12747c6ae99SBarry Smith representation. 12847c6ae99SBarry Smith 12947c6ae99SBarry Smith Not Collective 13047c6ae99SBarry Smith 13147c6ae99SBarry Smith Input Parameter: 13247c6ae99SBarry Smith . dm - the packer object 13347c6ae99SBarry Smith 13447c6ae99SBarry Smith Output Parameter: 13547c6ae99SBarry Smith . nDM - the number of DMs 13647c6ae99SBarry Smith 13747c6ae99SBarry Smith Level: beginner 13847c6ae99SBarry Smith 13947c6ae99SBarry Smith @*/ 1407087cfbeSBarry Smith PetscErrorCode DMCompositeGetNumberDM(DM dm,PetscInt *nDM) 14147c6ae99SBarry Smith { 14247c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 14371b14b3eSStefano Zampini PetscBool flg; 14471b14b3eSStefano Zampini PetscErrorCode ierr; 1455fd66863SKarl Rupp 14647c6ae99SBarry Smith PetscFunctionBegin; 14747c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 14871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 14971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 15047c6ae99SBarry Smith *nDM = com->nDM; 15147c6ae99SBarry Smith PetscFunctionReturn(0); 15247c6ae99SBarry Smith } 15347c6ae99SBarry Smith 15447c6ae99SBarry Smith 15547c6ae99SBarry Smith /*@C 15647c6ae99SBarry Smith DMCompositeGetAccess - Allows one to access the individual packed vectors in their global 15747c6ae99SBarry Smith representation. 15847c6ae99SBarry Smith 159d083f849SBarry Smith Collective on dm 16047c6ae99SBarry Smith 1619ae5db72SJed Brown Input Parameters: 16247c6ae99SBarry Smith + dm - the packer object 1639ae5db72SJed Brown - gvec - the global vector 1649ae5db72SJed Brown 1659ae5db72SJed Brown Output Parameters: 1660298fd71SBarry Smith . Vec* ... - the packed parallel vectors, NULL for those that are not needed 16747c6ae99SBarry Smith 16895452b02SPatrick Sanan Notes: 16995452b02SPatrick Sanan Use DMCompositeRestoreAccess() to return the vectors when you no longer need them 17047c6ae99SBarry Smith 171f73e5cebSJed Brown Fortran Notes: 172f73e5cebSJed Brown 173f73e5cebSJed Brown Fortran callers must use numbered versions of this routine, e.g., DMCompositeGetAccess4(dm,gvec,vec1,vec2,vec3,vec4) 174f73e5cebSJed Brown or use the alternative interface DMCompositeGetAccessArray(). 175f73e5cebSJed Brown 17647c6ae99SBarry Smith Level: advanced 17747c6ae99SBarry Smith 178f73e5cebSJed Brown .seealso: DMCompositeGetEntries(), DMCompositeScatter() 17947c6ae99SBarry Smith @*/ 1807087cfbeSBarry Smith PetscErrorCode DMCompositeGetAccess(DM dm,Vec gvec,...) 18147c6ae99SBarry Smith { 18247c6ae99SBarry Smith va_list Argp; 18347c6ae99SBarry Smith PetscErrorCode ierr; 18447c6ae99SBarry Smith struct DMCompositeLink *next; 18547c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 1865edff71fSBarry Smith PetscInt readonly; 18771b14b3eSStefano Zampini PetscBool flg; 18847c6ae99SBarry Smith 18947c6ae99SBarry Smith PetscFunctionBegin; 19047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19147c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 19271b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 19371b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 19447c6ae99SBarry Smith next = com->next; 19547c6ae99SBarry Smith if (!com->setup) { 196d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 19747c6ae99SBarry Smith } 19847c6ae99SBarry Smith 1995edff71fSBarry Smith ierr = VecLockGet(gvec,&readonly);CHKERRQ(ierr); 20047c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 20147c6ae99SBarry Smith va_start(Argp,gvec); 20247c6ae99SBarry Smith while (next) { 20347c6ae99SBarry Smith Vec *vec; 20447c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 2059ae5db72SJed Brown if (vec) { 2069ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,vec);CHKERRQ(ierr); 2075edff71fSBarry Smith if (readonly) { 2085edff71fSBarry Smith const PetscScalar *array; 2095edff71fSBarry Smith ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 2105edff71fSBarry Smith ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 2118860a134SJunchao Zhang ierr = VecLockReadPush(*vec);CHKERRQ(ierr); 2125edff71fSBarry Smith ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 2135edff71fSBarry Smith } else { 2145edff71fSBarry Smith PetscScalar *array; 2159ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 2169ae5db72SJed Brown ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 2179ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 21847c6ae99SBarry Smith } 2195edff71fSBarry Smith } 22047c6ae99SBarry Smith next = next->next; 22147c6ae99SBarry Smith } 22247c6ae99SBarry Smith va_end(Argp); 22347c6ae99SBarry Smith PetscFunctionReturn(0); 22447c6ae99SBarry Smith } 22547c6ae99SBarry Smith 226f73e5cebSJed Brown /*@C 227f73e5cebSJed Brown DMCompositeGetAccessArray - Allows one to access the individual packed vectors in their global 228f73e5cebSJed Brown representation. 229f73e5cebSJed Brown 230d083f849SBarry Smith Collective on dm 231f73e5cebSJed Brown 232f73e5cebSJed Brown Input Parameters: 233f73e5cebSJed Brown + dm - the packer object 234f73e5cebSJed Brown . pvec - packed vector 235f73e5cebSJed Brown . nwanted - number of vectors wanted 2360298fd71SBarry Smith - wanted - sorted array of vectors wanted, or NULL to get all vectors 237f73e5cebSJed Brown 238f73e5cebSJed Brown Output Parameters: 239f73e5cebSJed Brown . vecs - array of requested global vectors (must be allocated) 240f73e5cebSJed Brown 24195452b02SPatrick Sanan Notes: 24295452b02SPatrick Sanan Use DMCompositeRestoreAccessArray() to return the vectors when you no longer need them 243f73e5cebSJed Brown 244f73e5cebSJed Brown Level: advanced 245f73e5cebSJed Brown 246f73e5cebSJed Brown .seealso: DMCompositeGetAccess(), DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 247f73e5cebSJed Brown @*/ 248f73e5cebSJed Brown PetscErrorCode DMCompositeGetAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 249f73e5cebSJed Brown { 250f73e5cebSJed Brown PetscErrorCode ierr; 251f73e5cebSJed Brown struct DMCompositeLink *link; 252f73e5cebSJed Brown PetscInt i,wnum; 253f73e5cebSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 254bee642f7SBarry Smith PetscInt readonly; 25571b14b3eSStefano Zampini PetscBool flg; 256f73e5cebSJed Brown 257f73e5cebSJed Brown PetscFunctionBegin; 258f73e5cebSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 259f73e5cebSJed Brown PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 26071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 26171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 262f73e5cebSJed Brown if (!com->setup) { 263f73e5cebSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 264f73e5cebSJed Brown } 265f73e5cebSJed Brown 266bee642f7SBarry Smith ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 267f73e5cebSJed Brown for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 268f73e5cebSJed Brown if (!wanted || i == wanted[wnum]) { 269f73e5cebSJed Brown Vec v; 270f73e5cebSJed Brown ierr = DMGetGlobalVector(link->dm,&v);CHKERRQ(ierr); 271bee642f7SBarry Smith if (readonly) { 272bee642f7SBarry Smith const PetscScalar *array; 273bee642f7SBarry Smith ierr = VecGetArrayRead(pvec,&array);CHKERRQ(ierr); 274bee642f7SBarry Smith ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 2758860a134SJunchao Zhang ierr = VecLockReadPush(v);CHKERRQ(ierr); 276bee642f7SBarry Smith ierr = VecRestoreArrayRead(pvec,&array);CHKERRQ(ierr); 277bee642f7SBarry Smith } else { 278bee642f7SBarry Smith PetscScalar *array; 279f73e5cebSJed Brown ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 280f73e5cebSJed Brown ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 281f73e5cebSJed Brown ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 282bee642f7SBarry Smith } 283f73e5cebSJed Brown vecs[wnum++] = v; 284f73e5cebSJed Brown } 285f73e5cebSJed Brown } 286f73e5cebSJed Brown PetscFunctionReturn(0); 287f73e5cebSJed Brown } 288f73e5cebSJed Brown 2897ac2b803SAlex Fikl /*@C 2907ac2b803SAlex Fikl DMCompositeGetLocalAccessArray - Allows one to access the individual 2917ac2b803SAlex Fikl packed vectors in their local representation. 2927ac2b803SAlex Fikl 293d083f849SBarry Smith Collective on dm. 2947ac2b803SAlex Fikl 2957ac2b803SAlex Fikl Input Parameters: 2967ac2b803SAlex Fikl + dm - the packer object 2977ac2b803SAlex Fikl . pvec - packed vector 2987ac2b803SAlex Fikl . nwanted - number of vectors wanted 2997ac2b803SAlex Fikl - wanted - sorted array of vectors wanted, or NULL to get all vectors 3007ac2b803SAlex Fikl 3017ac2b803SAlex Fikl Output Parameters: 3027ac2b803SAlex Fikl . vecs - array of requested local vectors (must be allocated) 3037ac2b803SAlex Fikl 30495452b02SPatrick Sanan Notes: 30595452b02SPatrick Sanan Use DMCompositeRestoreLocalAccessArray() to return the vectors 3067ac2b803SAlex Fikl when you no longer need them. 3077ac2b803SAlex Fikl 3087ac2b803SAlex Fikl Level: advanced 3097ac2b803SAlex Fikl 3107ac2b803SAlex Fikl .seealso: DMCompositeRestoreLocalAccessArray(), DMCompositeGetAccess(), 3117ac2b803SAlex Fikl DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 3127ac2b803SAlex Fikl @*/ 3137ac2b803SAlex Fikl PetscErrorCode DMCompositeGetLocalAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 3147ac2b803SAlex Fikl { 3157ac2b803SAlex Fikl PetscErrorCode ierr; 3167ac2b803SAlex Fikl struct DMCompositeLink *link; 3177ac2b803SAlex Fikl PetscInt i,wnum; 3187ac2b803SAlex Fikl DM_Composite *com = (DM_Composite*)dm->data; 3197ac2b803SAlex Fikl PetscInt readonly; 3207ac2b803SAlex Fikl PetscInt nlocal = 0; 32171b14b3eSStefano Zampini PetscBool flg; 3227ac2b803SAlex Fikl 3237ac2b803SAlex Fikl PetscFunctionBegin; 3247ac2b803SAlex Fikl PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3257ac2b803SAlex Fikl PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 32671b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 32771b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 3287ac2b803SAlex Fikl if (!com->setup) { 3297ac2b803SAlex Fikl ierr = DMSetUp(dm);CHKERRQ(ierr); 3307ac2b803SAlex Fikl } 3317ac2b803SAlex Fikl 3327ac2b803SAlex Fikl ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 3337ac2b803SAlex Fikl for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 3347ac2b803SAlex Fikl if (!wanted || i == wanted[wnum]) { 3357ac2b803SAlex Fikl Vec v; 3367ac2b803SAlex Fikl ierr = DMGetLocalVector(link->dm,&v);CHKERRQ(ierr); 3377ac2b803SAlex Fikl if (readonly) { 3387ac2b803SAlex Fikl const PetscScalar *array; 3397ac2b803SAlex Fikl ierr = VecGetArrayRead(pvec,&array);CHKERRQ(ierr); 3407ac2b803SAlex Fikl ierr = VecPlaceArray(v,array+nlocal);CHKERRQ(ierr); 3418860a134SJunchao Zhang ierr = VecLockReadPush(v);CHKERRQ(ierr); 3427ac2b803SAlex Fikl ierr = VecRestoreArrayRead(pvec,&array);CHKERRQ(ierr); 3437ac2b803SAlex Fikl } else { 3447ac2b803SAlex Fikl PetscScalar *array; 3457ac2b803SAlex Fikl ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 3467ac2b803SAlex Fikl ierr = VecPlaceArray(v,array+nlocal);CHKERRQ(ierr); 3477ac2b803SAlex Fikl ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 3487ac2b803SAlex Fikl } 3497ac2b803SAlex Fikl vecs[wnum++] = v; 3507ac2b803SAlex Fikl } 3517ac2b803SAlex Fikl 3527ac2b803SAlex Fikl nlocal += link->nlocal; 3537ac2b803SAlex Fikl } 3547ac2b803SAlex Fikl 3557ac2b803SAlex Fikl PetscFunctionReturn(0); 3567ac2b803SAlex Fikl } 3577ac2b803SAlex Fikl 35847c6ae99SBarry Smith /*@C 359aa219208SBarry Smith DMCompositeRestoreAccess - Returns the vectors obtained with DMCompositeGetAccess() 36047c6ae99SBarry Smith representation. 36147c6ae99SBarry Smith 362d083f849SBarry Smith Collective on dm 36347c6ae99SBarry Smith 3649ae5db72SJed Brown Input Parameters: 36547c6ae99SBarry Smith + dm - the packer object 36647c6ae99SBarry Smith . gvec - the global vector 3670298fd71SBarry Smith - Vec* ... - the individual parallel vectors, NULL for those that are not needed 36847c6ae99SBarry Smith 36947c6ae99SBarry Smith Level: advanced 37047c6ae99SBarry Smith 3719ae5db72SJed Brown .seealso DMCompositeAddDM(), DMCreateGlobalVector(), 3726eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeScatter(), 373aa219208SBarry Smith DMCompositeRestoreAccess(), DMCompositeGetAccess() 37447c6ae99SBarry Smith 37547c6ae99SBarry Smith @*/ 3767087cfbeSBarry Smith PetscErrorCode DMCompositeRestoreAccess(DM dm,Vec gvec,...) 37747c6ae99SBarry Smith { 37847c6ae99SBarry Smith va_list Argp; 37947c6ae99SBarry Smith PetscErrorCode ierr; 38047c6ae99SBarry Smith struct DMCompositeLink *next; 38147c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 3825edff71fSBarry Smith PetscInt readonly; 38371b14b3eSStefano Zampini PetscBool flg; 38447c6ae99SBarry Smith 38547c6ae99SBarry Smith PetscFunctionBegin; 38647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 38747c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 38871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 38971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 39047c6ae99SBarry Smith next = com->next; 39147c6ae99SBarry Smith if (!com->setup) { 392d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 39347c6ae99SBarry Smith } 39447c6ae99SBarry Smith 3955edff71fSBarry Smith ierr = VecLockGet(gvec,&readonly);CHKERRQ(ierr); 39647c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 39747c6ae99SBarry Smith va_start(Argp,gvec); 39847c6ae99SBarry Smith while (next) { 39947c6ae99SBarry Smith Vec *vec; 40047c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 4019ae5db72SJed Brown if (vec) { 4029ae5db72SJed Brown ierr = VecResetArray(*vec);CHKERRQ(ierr); 4035edff71fSBarry Smith if (readonly) { 4048860a134SJunchao Zhang ierr = VecLockReadPop(*vec);CHKERRQ(ierr); 4055edff71fSBarry Smith } 406bee642f7SBarry Smith ierr = DMRestoreGlobalVector(next->dm,vec);CHKERRQ(ierr); 40747c6ae99SBarry Smith } 40847c6ae99SBarry Smith next = next->next; 40947c6ae99SBarry Smith } 41047c6ae99SBarry Smith va_end(Argp); 41147c6ae99SBarry Smith PetscFunctionReturn(0); 41247c6ae99SBarry Smith } 41347c6ae99SBarry Smith 414f73e5cebSJed Brown /*@C 415f73e5cebSJed Brown DMCompositeRestoreAccessArray - Returns the vectors obtained with DMCompositeGetAccessArray() 416f73e5cebSJed Brown 417d083f849SBarry Smith Collective on dm 418f73e5cebSJed Brown 419f73e5cebSJed Brown Input Parameters: 420f73e5cebSJed Brown + dm - the packer object 421f73e5cebSJed Brown . pvec - packed vector 422f73e5cebSJed Brown . nwanted - number of vectors wanted 4230298fd71SBarry Smith . wanted - sorted array of vectors wanted, or NULL to get all vectors 424f73e5cebSJed Brown - vecs - array of global vectors to return 425f73e5cebSJed Brown 426f73e5cebSJed Brown Level: advanced 427f73e5cebSJed Brown 428f73e5cebSJed Brown .seealso: DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), DMCompositeScatter(), DMCompositeGather() 429f73e5cebSJed Brown @*/ 430f73e5cebSJed Brown PetscErrorCode DMCompositeRestoreAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 431f73e5cebSJed Brown { 432f73e5cebSJed Brown PetscErrorCode ierr; 433f73e5cebSJed Brown struct DMCompositeLink *link; 434f73e5cebSJed Brown PetscInt i,wnum; 435f73e5cebSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 436bee642f7SBarry Smith PetscInt readonly; 43771b14b3eSStefano Zampini PetscBool flg; 438f73e5cebSJed Brown 439f73e5cebSJed Brown PetscFunctionBegin; 440f73e5cebSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 441f73e5cebSJed Brown PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 44271b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 44371b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 444f73e5cebSJed Brown if (!com->setup) { 445f73e5cebSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 446f73e5cebSJed Brown } 447f73e5cebSJed Brown 448bee642f7SBarry Smith ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 449f73e5cebSJed Brown for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 450f73e5cebSJed Brown if (!wanted || i == wanted[wnum]) { 451f73e5cebSJed Brown ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 452bee642f7SBarry Smith if (readonly) { 4538860a134SJunchao Zhang ierr = VecLockReadPop(vecs[wnum]);CHKERRQ(ierr); 454bee642f7SBarry Smith } 455f73e5cebSJed Brown ierr = DMRestoreGlobalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 456f73e5cebSJed Brown wnum++; 457f73e5cebSJed Brown } 458f73e5cebSJed Brown } 459f73e5cebSJed Brown PetscFunctionReturn(0); 460f73e5cebSJed Brown } 461f73e5cebSJed Brown 4627ac2b803SAlex Fikl /*@C 4637ac2b803SAlex Fikl DMCompositeRestoreLocalAccessArray - Returns the vectors obtained with DMCompositeGetLocalAccessArray(). 4647ac2b803SAlex Fikl 465d083f849SBarry Smith Collective on dm. 4667ac2b803SAlex Fikl 4677ac2b803SAlex Fikl Input Parameters: 4687ac2b803SAlex Fikl + dm - the packer object 4697ac2b803SAlex Fikl . pvec - packed vector 4707ac2b803SAlex Fikl . nwanted - number of vectors wanted 4717ac2b803SAlex Fikl . wanted - sorted array of vectors wanted, or NULL to restore all vectors 4727ac2b803SAlex Fikl - vecs - array of local vectors to return 4737ac2b803SAlex Fikl 4747ac2b803SAlex Fikl Level: advanced 4757ac2b803SAlex Fikl 4767ac2b803SAlex Fikl Notes: 4777ac2b803SAlex Fikl nwanted and wanted must match the values given to DMCompositeGetLocalAccessArray() 4787ac2b803SAlex Fikl otherwise the call will fail. 4797ac2b803SAlex Fikl 4807ac2b803SAlex Fikl .seealso: DMCompositeGetLocalAccessArray(), DMCompositeRestoreAccessArray(), 4817ac2b803SAlex Fikl DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), 4827ac2b803SAlex Fikl DMCompositeScatter(), DMCompositeGather() 4837ac2b803SAlex Fikl @*/ 4847ac2b803SAlex Fikl PetscErrorCode DMCompositeRestoreLocalAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 4857ac2b803SAlex Fikl { 4867ac2b803SAlex Fikl PetscErrorCode ierr; 4877ac2b803SAlex Fikl struct DMCompositeLink *link; 4887ac2b803SAlex Fikl PetscInt i,wnum; 4897ac2b803SAlex Fikl DM_Composite *com = (DM_Composite*)dm->data; 4907ac2b803SAlex Fikl PetscInt readonly; 49171b14b3eSStefano Zampini PetscBool flg; 4927ac2b803SAlex Fikl 4937ac2b803SAlex Fikl PetscFunctionBegin; 4947ac2b803SAlex Fikl PetscValidHeaderSpecific(dm,DM_CLASSID,1); 4957ac2b803SAlex Fikl PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 49671b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 49771b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 4987ac2b803SAlex Fikl if (!com->setup) { 4997ac2b803SAlex Fikl ierr = DMSetUp(dm);CHKERRQ(ierr); 5007ac2b803SAlex Fikl } 5017ac2b803SAlex Fikl 5027ac2b803SAlex Fikl ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 5037ac2b803SAlex Fikl for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 5047ac2b803SAlex Fikl if (!wanted || i == wanted[wnum]) { 5057ac2b803SAlex Fikl ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 5067ac2b803SAlex Fikl if (readonly) { 5078860a134SJunchao Zhang ierr = VecLockReadPop(vecs[wnum]);CHKERRQ(ierr); 5087ac2b803SAlex Fikl } 5097ac2b803SAlex Fikl ierr = DMRestoreLocalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 5107ac2b803SAlex Fikl wnum++; 5117ac2b803SAlex Fikl } 5127ac2b803SAlex Fikl } 5137ac2b803SAlex Fikl PetscFunctionReturn(0); 5147ac2b803SAlex Fikl } 5157ac2b803SAlex Fikl 51647c6ae99SBarry Smith /*@C 51747c6ae99SBarry Smith DMCompositeScatter - Scatters from a global packed vector into its individual local vectors 51847c6ae99SBarry Smith 519d083f849SBarry Smith Collective on dm 52047c6ae99SBarry Smith 5219ae5db72SJed Brown Input Parameters: 52247c6ae99SBarry Smith + dm - the packer object 52347c6ae99SBarry Smith . gvec - the global vector 5240298fd71SBarry Smith - Vec ... - the individual sequential vectors, NULL for those that are not needed 52547c6ae99SBarry Smith 52647c6ae99SBarry Smith Level: advanced 52747c6ae99SBarry Smith 5286f3c3dcfSJed Brown Notes: 5296f3c3dcfSJed Brown DMCompositeScatterArray() is a non-variadic alternative that is often more convenient for library callers and is 5306f3c3dcfSJed Brown accessible from Fortran. 5316f3c3dcfSJed Brown 5329ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 5336eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 53447c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 5356f3c3dcfSJed Brown DMCompositeScatterArray() 53647c6ae99SBarry Smith 53747c6ae99SBarry Smith @*/ 5387087cfbeSBarry Smith PetscErrorCode DMCompositeScatter(DM dm,Vec gvec,...) 53947c6ae99SBarry Smith { 54047c6ae99SBarry Smith va_list Argp; 54147c6ae99SBarry Smith PetscErrorCode ierr; 54247c6ae99SBarry Smith struct DMCompositeLink *next; 5438fd8f222SJed Brown PetscInt cnt; 54447c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 54571b14b3eSStefano Zampini PetscBool flg; 54647c6ae99SBarry Smith 54747c6ae99SBarry Smith PetscFunctionBegin; 54847c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 54947c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 55071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 55171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 55247c6ae99SBarry Smith if (!com->setup) { 553d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 55447c6ae99SBarry Smith } 55547c6ae99SBarry Smith 55647c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 55747c6ae99SBarry Smith va_start(Argp,gvec); 5588fd8f222SJed Brown for (cnt=3,next=com->next; next; cnt++,next=next->next) { 5599ae5db72SJed Brown Vec local; 5609ae5db72SJed Brown local = va_arg(Argp, Vec); 5619ae5db72SJed Brown if (local) { 5629ae5db72SJed Brown Vec global; 5635edff71fSBarry Smith const PetscScalar *array; 5649ae5db72SJed Brown PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 5659ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 5665edff71fSBarry Smith ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 5679ae5db72SJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 5689ae5db72SJed Brown ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 5699ae5db72SJed Brown ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 5705edff71fSBarry Smith ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 5719ae5db72SJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 5729ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 57347c6ae99SBarry Smith } 57447c6ae99SBarry Smith } 57547c6ae99SBarry Smith va_end(Argp); 57647c6ae99SBarry Smith PetscFunctionReturn(0); 57747c6ae99SBarry Smith } 57847c6ae99SBarry Smith 5796f3c3dcfSJed Brown /*@ 5806f3c3dcfSJed Brown DMCompositeScatterArray - Scatters from a global packed vector into its individual local vectors 5816f3c3dcfSJed Brown 582d083f849SBarry Smith Collective on dm 5836f3c3dcfSJed Brown 5846f3c3dcfSJed Brown Input Parameters: 5856f3c3dcfSJed Brown + dm - the packer object 5866f3c3dcfSJed Brown . gvec - the global vector 587a2b725a8SWilliam Gropp - lvecs - array of local vectors, NULL for any that are not needed 5886f3c3dcfSJed Brown 5896f3c3dcfSJed Brown Level: advanced 5906f3c3dcfSJed Brown 5916f3c3dcfSJed Brown Note: 592907376e6SBarry Smith This is a non-variadic alternative to DMCompositeScatter() 5936f3c3dcfSJed Brown 5946f3c3dcfSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector() 5956f3c3dcfSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 5966f3c3dcfSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 5976f3c3dcfSJed Brown 5986f3c3dcfSJed Brown @*/ 5996f3c3dcfSJed Brown PetscErrorCode DMCompositeScatterArray(DM dm,Vec gvec,Vec *lvecs) 6006f3c3dcfSJed Brown { 6016f3c3dcfSJed Brown PetscErrorCode ierr; 6026f3c3dcfSJed Brown struct DMCompositeLink *next; 6036f3c3dcfSJed Brown PetscInt i; 6046f3c3dcfSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 60571b14b3eSStefano Zampini PetscBool flg; 6066f3c3dcfSJed Brown 6076f3c3dcfSJed Brown PetscFunctionBegin; 6086f3c3dcfSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 6096f3c3dcfSJed Brown PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 61071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 61171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 6126f3c3dcfSJed Brown if (!com->setup) { 6136f3c3dcfSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 6146f3c3dcfSJed Brown } 6156f3c3dcfSJed Brown 6166f3c3dcfSJed Brown /* loop over packed objects, handling one at at time */ 6176f3c3dcfSJed Brown for (i=0,next=com->next; next; next=next->next,i++) { 6186f3c3dcfSJed Brown if (lvecs[i]) { 6196f3c3dcfSJed Brown Vec global; 620c5d31e75SLisandro Dalcin const PetscScalar *array; 6216f3c3dcfSJed Brown PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 6226f3c3dcfSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 623c5d31e75SLisandro Dalcin ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 624c5d31e75SLisandro Dalcin ierr = VecPlaceArray(global,(PetscScalar*)array+next->rstart);CHKERRQ(ierr); 6256f3c3dcfSJed Brown ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 6266f3c3dcfSJed Brown ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 627c5d31e75SLisandro Dalcin ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 6286f3c3dcfSJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 6296f3c3dcfSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 6306f3c3dcfSJed Brown } 6316f3c3dcfSJed Brown } 6326f3c3dcfSJed Brown PetscFunctionReturn(0); 6336f3c3dcfSJed Brown } 6346f3c3dcfSJed Brown 63547c6ae99SBarry Smith /*@C 63647c6ae99SBarry Smith DMCompositeGather - Gathers into a global packed vector from its individual local vectors 63747c6ae99SBarry Smith 638d083f849SBarry Smith Collective on dm 63947c6ae99SBarry Smith 64047c6ae99SBarry Smith Input Parameter: 64147c6ae99SBarry Smith + dm - the packer object 64247c6ae99SBarry Smith . gvec - the global vector 643907376e6SBarry Smith . imode - INSERT_VALUES or ADD_VALUES 6440298fd71SBarry Smith - Vec ... - the individual sequential vectors, NULL for any that are not needed 64547c6ae99SBarry Smith 64647c6ae99SBarry Smith Level: advanced 64747c6ae99SBarry Smith 648f5f57ec0SBarry Smith Not available from Fortran, Fortran users can use DMCompositeGatherArray() 649f5f57ec0SBarry Smith 6509ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 6516eb61c8cSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 65247c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 65347c6ae99SBarry Smith 65447c6ae99SBarry Smith @*/ 6551dac896bSSatish Balay PetscErrorCode DMCompositeGather(DM dm,InsertMode imode,Vec gvec,...) 65647c6ae99SBarry Smith { 65747c6ae99SBarry Smith va_list Argp; 65847c6ae99SBarry Smith PetscErrorCode ierr; 65947c6ae99SBarry Smith struct DMCompositeLink *next; 66047c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 6618fd8f222SJed Brown PetscInt cnt; 66271b14b3eSStefano Zampini PetscBool flg; 66347c6ae99SBarry Smith 66447c6ae99SBarry Smith PetscFunctionBegin; 66547c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 66647c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 66771b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 66871b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 66947c6ae99SBarry Smith if (!com->setup) { 670d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 67147c6ae99SBarry Smith } 67247c6ae99SBarry Smith 67347c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 6741dac896bSSatish Balay va_start(Argp,gvec); 6758fd8f222SJed Brown for (cnt=3,next=com->next; next; cnt++,next=next->next) { 6769ae5db72SJed Brown Vec local; 6779ae5db72SJed Brown local = va_arg(Argp, Vec); 6789ae5db72SJed Brown if (local) { 67947c6ae99SBarry Smith PetscScalar *array; 6809ae5db72SJed Brown Vec global; 6819ae5db72SJed Brown PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 6829ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 6839ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 6849ae5db72SJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 6859ae5db72SJed Brown ierr = DMLocalToGlobalBegin(next->dm,local,imode,global);CHKERRQ(ierr); 6869ae5db72SJed Brown ierr = DMLocalToGlobalEnd(next->dm,local,imode,global);CHKERRQ(ierr); 6879ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 6889ae5db72SJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 6899ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 69047c6ae99SBarry Smith } 69147c6ae99SBarry Smith } 69247c6ae99SBarry Smith va_end(Argp); 69347c6ae99SBarry Smith PetscFunctionReturn(0); 69447c6ae99SBarry Smith } 69547c6ae99SBarry Smith 6966f3c3dcfSJed Brown /*@ 6976f3c3dcfSJed Brown DMCompositeGatherArray - Gathers into a global packed vector from its individual local vectors 6986f3c3dcfSJed Brown 699d083f849SBarry Smith Collective on dm 7006f3c3dcfSJed Brown 7016f3c3dcfSJed Brown Input Parameter: 7026f3c3dcfSJed Brown + dm - the packer object 7036f3c3dcfSJed Brown . gvec - the global vector 704907376e6SBarry Smith . imode - INSERT_VALUES or ADD_VALUES 7056f3c3dcfSJed Brown - lvecs - the individual sequential vectors, NULL for any that are not needed 7066f3c3dcfSJed Brown 7076f3c3dcfSJed Brown Level: advanced 7086f3c3dcfSJed Brown 7096f3c3dcfSJed Brown Notes: 7106f3c3dcfSJed Brown This is a non-variadic alternative to DMCompositeGather(). 7116f3c3dcfSJed Brown 7126f3c3dcfSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 7136f3c3dcfSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 7146f3c3dcfSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries(), 7156f3c3dcfSJed Brown @*/ 7161dac896bSSatish Balay PetscErrorCode DMCompositeGatherArray(DM dm,InsertMode imode,Vec gvec,Vec *lvecs) 7176f3c3dcfSJed Brown { 7186f3c3dcfSJed Brown PetscErrorCode ierr; 7196f3c3dcfSJed Brown struct DMCompositeLink *next; 7206f3c3dcfSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 7216f3c3dcfSJed Brown PetscInt i; 72271b14b3eSStefano Zampini PetscBool flg; 7236f3c3dcfSJed Brown 7246f3c3dcfSJed Brown PetscFunctionBegin; 7256f3c3dcfSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 7266f3c3dcfSJed Brown PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 72771b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 72871b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 7296f3c3dcfSJed Brown if (!com->setup) { 7306f3c3dcfSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 7316f3c3dcfSJed Brown } 7326f3c3dcfSJed Brown 7336f3c3dcfSJed Brown /* loop over packed objects, handling one at at time */ 7346f3c3dcfSJed Brown for (next=com->next,i=0; next; next=next->next,i++) { 7356f3c3dcfSJed Brown if (lvecs[i]) { 7366f3c3dcfSJed Brown PetscScalar *array; 7376f3c3dcfSJed Brown Vec global; 7386f3c3dcfSJed Brown PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 7396f3c3dcfSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 7406f3c3dcfSJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 7416f3c3dcfSJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 7426f3c3dcfSJed Brown ierr = DMLocalToGlobalBegin(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 7436f3c3dcfSJed Brown ierr = DMLocalToGlobalEnd(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 7446f3c3dcfSJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 7456f3c3dcfSJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 7466f3c3dcfSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 7476f3c3dcfSJed Brown } 7486f3c3dcfSJed Brown } 7496f3c3dcfSJed Brown PetscFunctionReturn(0); 7506f3c3dcfSJed Brown } 7516f3c3dcfSJed Brown 752f5f57ec0SBarry Smith /*@ 753aa219208SBarry Smith DMCompositeAddDM - adds a DM vector to a DMComposite 75447c6ae99SBarry Smith 755d083f849SBarry Smith Collective on dm 75647c6ae99SBarry Smith 75747c6ae99SBarry Smith Input Parameter: 7589b52a9b5SPatrick Sanan + dmc - the DMComposite (packer) object 759f5f57ec0SBarry Smith - dm - the DM object 76047c6ae99SBarry Smith 76147c6ae99SBarry Smith Level: advanced 76247c6ae99SBarry Smith 7630c010503SBarry Smith .seealso DMDestroy(), DMCompositeGather(), DMCompositeAddDM(), DMCreateGlobalVector(), 7646eb61c8cSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 76547c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 76647c6ae99SBarry Smith 76747c6ae99SBarry Smith @*/ 7687087cfbeSBarry Smith PetscErrorCode DMCompositeAddDM(DM dmc,DM dm) 76947c6ae99SBarry Smith { 77047c6ae99SBarry Smith PetscErrorCode ierr; 77106ebdd98SJed Brown PetscInt n,nlocal; 77247c6ae99SBarry Smith struct DMCompositeLink *mine,*next; 77306ebdd98SJed Brown Vec global,local; 77447c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dmc->data; 77571b14b3eSStefano Zampini PetscBool flg; 77647c6ae99SBarry Smith 77747c6ae99SBarry Smith PetscFunctionBegin; 77847c6ae99SBarry Smith PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 77947c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,2); 78071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dmc,DMCOMPOSITE,&flg);CHKERRQ(ierr); 78171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 78247c6ae99SBarry Smith next = com->next; 783ce94432eSBarry Smith if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONGSTATE,"Cannot add a DM once you have used the DMComposite"); 78447c6ae99SBarry Smith 78547c6ae99SBarry Smith /* create new link */ 786b00a9115SJed Brown ierr = PetscNew(&mine);CHKERRQ(ierr); 78747c6ae99SBarry Smith ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 78847c6ae99SBarry Smith ierr = DMGetGlobalVector(dm,&global);CHKERRQ(ierr); 78947c6ae99SBarry Smith ierr = VecGetLocalSize(global,&n);CHKERRQ(ierr); 79047c6ae99SBarry Smith ierr = DMRestoreGlobalVector(dm,&global);CHKERRQ(ierr); 79106ebdd98SJed Brown ierr = DMGetLocalVector(dm,&local);CHKERRQ(ierr); 79206ebdd98SJed Brown ierr = VecGetSize(local,&nlocal);CHKERRQ(ierr); 79306ebdd98SJed Brown ierr = DMRestoreLocalVector(dm,&local);CHKERRQ(ierr); 7948865f1eaSKarl Rupp 79547c6ae99SBarry Smith mine->n = n; 79606ebdd98SJed Brown mine->nlocal = nlocal; 79747c6ae99SBarry Smith mine->dm = dm; 7980298fd71SBarry Smith mine->next = NULL; 79947c6ae99SBarry Smith com->n += n; 8007ac2b803SAlex Fikl com->nghost += nlocal; 80147c6ae99SBarry Smith 80247c6ae99SBarry Smith /* add to end of list */ 8038865f1eaSKarl Rupp if (!next) com->next = mine; 8048865f1eaSKarl Rupp else { 80547c6ae99SBarry Smith while (next->next) next = next->next; 80647c6ae99SBarry Smith next->next = mine; 80747c6ae99SBarry Smith } 80847c6ae99SBarry Smith com->nDM++; 80947c6ae99SBarry Smith com->nmine++; 81047c6ae99SBarry Smith PetscFunctionReturn(0); 81147c6ae99SBarry Smith } 81247c6ae99SBarry Smith 8139804daf3SBarry Smith #include <petscdraw.h> 81426887b52SJed Brown PETSC_EXTERN PetscErrorCode VecView_MPI(Vec,PetscViewer); 8157087cfbeSBarry Smith PetscErrorCode VecView_DMComposite(Vec gvec,PetscViewer viewer) 81647c6ae99SBarry Smith { 81747c6ae99SBarry Smith DM dm; 81847c6ae99SBarry Smith PetscErrorCode ierr; 81947c6ae99SBarry Smith struct DMCompositeLink *next; 82047c6ae99SBarry Smith PetscBool isdraw; 821cef07954SSatish Balay DM_Composite *com; 82247c6ae99SBarry Smith 82347c6ae99SBarry Smith PetscFunctionBegin; 824c688c046SMatthew G Knepley ierr = VecGetDM(gvec, &dm);CHKERRQ(ierr); 825ce94432eSBarry Smith if (!dm) SETERRQ(PetscObjectComm((PetscObject)gvec),PETSC_ERR_ARG_WRONG,"Vector not generated from a DMComposite"); 82647c6ae99SBarry Smith com = (DM_Composite*)dm->data; 82747c6ae99SBarry Smith next = com->next; 82847c6ae99SBarry Smith 829251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 83047c6ae99SBarry Smith if (!isdraw) { 83147c6ae99SBarry Smith /* do I really want to call this? */ 83247c6ae99SBarry Smith ierr = VecView_MPI(gvec,viewer);CHKERRQ(ierr); 83347c6ae99SBarry Smith } else { 83447c6ae99SBarry Smith PetscInt cnt = 0; 83547c6ae99SBarry Smith 83647c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 83747c6ae99SBarry Smith while (next) { 83847c6ae99SBarry Smith Vec vec; 839ca4278abSLisandro Dalcin const PetscScalar *array; 84047c6ae99SBarry Smith PetscInt bs; 84147c6ae99SBarry Smith 8429ae5db72SJed Brown /* Should use VecGetSubVector() eventually, but would need to forward the DM for that to work */ 8439ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&vec);CHKERRQ(ierr); 844ca4278abSLisandro Dalcin ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 845ca4278abSLisandro Dalcin ierr = VecPlaceArray(vec,(PetscScalar*)array+next->rstart);CHKERRQ(ierr); 846ca4278abSLisandro Dalcin ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 84747c6ae99SBarry Smith ierr = VecView(vec,viewer);CHKERRQ(ierr); 8489ae5db72SJed Brown ierr = VecResetArray(vec);CHKERRQ(ierr); 849ca4278abSLisandro Dalcin ierr = VecGetBlockSize(vec,&bs);CHKERRQ(ierr); 8509ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&vec);CHKERRQ(ierr); 85147c6ae99SBarry Smith ierr = PetscViewerDrawBaseAdd(viewer,bs);CHKERRQ(ierr); 85247c6ae99SBarry Smith cnt += bs; 85347c6ae99SBarry Smith next = next->next; 85447c6ae99SBarry Smith } 85547c6ae99SBarry Smith ierr = PetscViewerDrawBaseAdd(viewer,-cnt);CHKERRQ(ierr); 85647c6ae99SBarry Smith } 85747c6ae99SBarry Smith PetscFunctionReturn(0); 85847c6ae99SBarry Smith } 85947c6ae99SBarry Smith 8607087cfbeSBarry Smith PetscErrorCode DMCreateGlobalVector_Composite(DM dm,Vec *gvec) 86147c6ae99SBarry Smith { 86247c6ae99SBarry Smith PetscErrorCode ierr; 86347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 86447c6ae99SBarry Smith 86547c6ae99SBarry Smith PetscFunctionBegin; 86647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 867d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 868ce94432eSBarry Smith ierr = VecCreateMPI(PetscObjectComm((PetscObject)dm),com->n,com->N,gvec);CHKERRQ(ierr); 869c688c046SMatthew G Knepley ierr = VecSetDM(*gvec, dm);CHKERRQ(ierr); 87047c6ae99SBarry Smith ierr = VecSetOperation(*gvec,VECOP_VIEW,(void (*)(void))VecView_DMComposite);CHKERRQ(ierr); 87147c6ae99SBarry Smith PetscFunctionReturn(0); 87247c6ae99SBarry Smith } 87347c6ae99SBarry Smith 8747087cfbeSBarry Smith PetscErrorCode DMCreateLocalVector_Composite(DM dm,Vec *lvec) 87547c6ae99SBarry Smith { 87647c6ae99SBarry Smith PetscErrorCode ierr; 87747c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 87847c6ae99SBarry Smith 87947c6ae99SBarry Smith PetscFunctionBegin; 88047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 88147c6ae99SBarry Smith if (!com->setup) { 882d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 88347c6ae99SBarry Smith } 884f0e01b1fSVincent Le Chenadec ierr = VecCreateSeq(PETSC_COMM_SELF,com->nghost,lvec);CHKERRQ(ierr); 885c688c046SMatthew G Knepley ierr = VecSetDM(*lvec, dm);CHKERRQ(ierr); 88647c6ae99SBarry Smith PetscFunctionReturn(0); 88747c6ae99SBarry Smith } 88847c6ae99SBarry Smith 88947c6ae99SBarry Smith /*@C 8909ae5db72SJed Brown DMCompositeGetISLocalToGlobalMappings - gets an ISLocalToGlobalMapping for each DM in the DMComposite, maps to the composite global space 89147c6ae99SBarry Smith 89206ebdd98SJed Brown Collective on DM 89347c6ae99SBarry Smith 89447c6ae99SBarry Smith Input Parameter: 89547c6ae99SBarry Smith . dm - the packer object 89647c6ae99SBarry Smith 89747c6ae99SBarry Smith Output Parameters: 8989ae5db72SJed Brown . ltogs - the individual mappings for each packed vector. Note that this includes 8999ae5db72SJed Brown all the ghost points that individual ghosted DMDA's may have. 90047c6ae99SBarry Smith 90147c6ae99SBarry Smith Level: advanced 90247c6ae99SBarry Smith 90347c6ae99SBarry Smith Notes: 9046eb61c8cSJed Brown Each entry of ltogs should be destroyed with ISLocalToGlobalMappingDestroy(), the ltogs array should be freed with PetscFree(). 90547c6ae99SBarry Smith 906f5f57ec0SBarry Smith Not available from Fortran 907f5f57ec0SBarry Smith 9089ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 90947c6ae99SBarry Smith DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 91047c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 91147c6ae99SBarry Smith 91247c6ae99SBarry Smith @*/ 9137087cfbeSBarry Smith PetscErrorCode DMCompositeGetISLocalToGlobalMappings(DM dm,ISLocalToGlobalMapping **ltogs) 91447c6ae99SBarry Smith { 91547c6ae99SBarry Smith PetscErrorCode ierr; 91647c6ae99SBarry Smith PetscInt i,*idx,n,cnt; 91747c6ae99SBarry Smith struct DMCompositeLink *next; 91847c6ae99SBarry Smith PetscMPIInt rank; 91947c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 92071b14b3eSStefano Zampini PetscBool flg; 92147c6ae99SBarry Smith 92247c6ae99SBarry Smith PetscFunctionBegin; 92347c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 92471b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 92571b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 926728e99d6SJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 927854ce69bSBarry Smith ierr = PetscMalloc1(com->nDM,ltogs);CHKERRQ(ierr); 92847c6ae99SBarry Smith next = com->next; 929ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 93047c6ae99SBarry Smith 93147c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 93247c6ae99SBarry Smith cnt = 0; 93347c6ae99SBarry Smith while (next) { 9346eb61c8cSJed Brown ISLocalToGlobalMapping ltog; 9356eb61c8cSJed Brown PetscMPIInt size; 93686994e45SJed Brown const PetscInt *suboff,*indices; 9376eb61c8cSJed Brown Vec global; 93847c6ae99SBarry Smith 9396eb61c8cSJed Brown /* Get sub-DM global indices for each local dof */ 9401411c6eeSJed Brown ierr = DMGetLocalToGlobalMapping(next->dm,<og);CHKERRQ(ierr); 9416eb61c8cSJed Brown ierr = ISLocalToGlobalMappingGetSize(ltog,&n);CHKERRQ(ierr); 94286994e45SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltog,&indices);CHKERRQ(ierr); 943785e854fSJed Brown ierr = PetscMalloc1(n,&idx);CHKERRQ(ierr); 94447c6ae99SBarry Smith 9456eb61c8cSJed Brown /* Get the offsets for the sub-DM global vector */ 9466eb61c8cSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 9476eb61c8cSJed Brown ierr = VecGetOwnershipRanges(global,&suboff);CHKERRQ(ierr); 948ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)global),&size);CHKERRQ(ierr); 9496eb61c8cSJed Brown 9506eb61c8cSJed Brown /* Shift the sub-DM definition of the global space to the composite global space */ 9516eb61c8cSJed Brown for (i=0; i<n; i++) { 95286994e45SJed Brown PetscInt subi = indices[i],lo = 0,hi = size,t; 953*e333b035SStefano Zampini /* There's no consensus on what a negative index means, 954*e333b035SStefano Zampini except for skipping when setting the values in vectors and matrices */ 955*e333b035SStefano Zampini if (subi < 0) { idx[i] = subi - next->grstarts[rank]; continue; } 9566eb61c8cSJed Brown /* Binary search to find which rank owns subi */ 9576eb61c8cSJed Brown while (hi-lo > 1) { 9586eb61c8cSJed Brown t = lo + (hi-lo)/2; 9596eb61c8cSJed Brown if (suboff[t] > subi) hi = t; 9606eb61c8cSJed Brown else lo = t; 9616eb61c8cSJed Brown } 9626eb61c8cSJed Brown idx[i] = subi - suboff[lo] + next->grstarts[lo]; 9636eb61c8cSJed Brown } 96486994e45SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltog,&indices);CHKERRQ(ierr); 965f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm),1,n,idx,PETSC_OWN_POINTER,&(*ltogs)[cnt]);CHKERRQ(ierr); 9666eb61c8cSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 96747c6ae99SBarry Smith next = next->next; 96847c6ae99SBarry Smith cnt++; 96947c6ae99SBarry Smith } 97047c6ae99SBarry Smith PetscFunctionReturn(0); 97147c6ae99SBarry Smith } 97247c6ae99SBarry Smith 97387c85e80SJed Brown /*@C 9749ae5db72SJed Brown DMCompositeGetLocalISs - Gets index sets for each component of a composite local vector 97587c85e80SJed Brown 97687c85e80SJed Brown Not Collective 97787c85e80SJed Brown 97887c85e80SJed Brown Input Arguments: 97987c85e80SJed Brown . dm - composite DM 98087c85e80SJed Brown 98187c85e80SJed Brown Output Arguments: 98287c85e80SJed Brown . is - array of serial index sets for each each component of the DMComposite 98387c85e80SJed Brown 98487c85e80SJed Brown Level: intermediate 98587c85e80SJed Brown 98687c85e80SJed Brown Notes: 98787c85e80SJed Brown At present, a composite local vector does not normally exist. This function is used to provide index sets for 98887c85e80SJed Brown MatGetLocalSubMatrix(). In the future, the scatters for each entry in the DMComposite may be be merged into a single 9899ae5db72SJed Brown scatter to a composite local vector. The user should not typically need to know which is being done. 99087c85e80SJed Brown 99187c85e80SJed Brown To get the composite global indices at all local points (including ghosts), use DMCompositeGetISLocalToGlobalMappings(). 99287c85e80SJed Brown 99387c85e80SJed Brown To get index sets for pieces of the composite global vector, use DMCompositeGetGlobalISs(). 99487c85e80SJed Brown 99587c85e80SJed Brown Each returned IS should be destroyed with ISDestroy(), the array should be freed with PetscFree(). 99687c85e80SJed Brown 997f5f57ec0SBarry Smith Not available from Fortran 998f5f57ec0SBarry Smith 99987c85e80SJed Brown .seealso: DMCompositeGetGlobalISs(), DMCompositeGetISLocalToGlobalMappings(), MatGetLocalSubMatrix(), MatCreateLocalRef() 100087c85e80SJed Brown @*/ 10017087cfbeSBarry Smith PetscErrorCode DMCompositeGetLocalISs(DM dm,IS **is) 100287c85e80SJed Brown { 100387c85e80SJed Brown PetscErrorCode ierr; 100487c85e80SJed Brown DM_Composite *com = (DM_Composite*)dm->data; 100587c85e80SJed Brown struct DMCompositeLink *link; 100687c85e80SJed Brown PetscInt cnt,start; 100771b14b3eSStefano Zampini PetscBool flg; 100887c85e80SJed Brown 100987c85e80SJed Brown PetscFunctionBegin; 101087c85e80SJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 101187c85e80SJed Brown PetscValidPointer(is,2); 101271b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 101371b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 1014785e854fSJed Brown ierr = PetscMalloc1(com->nmine,is);CHKERRQ(ierr); 101506ebdd98SJed Brown for (cnt=0,start=0,link=com->next; link; start+=link->nlocal,cnt++,link=link->next) { 1016520db06cSJed Brown PetscInt bs; 10179ae5db72SJed Brown ierr = ISCreateStride(PETSC_COMM_SELF,link->nlocal,start,1,&(*is)[cnt]);CHKERRQ(ierr); 10181411c6eeSJed Brown ierr = DMGetBlockSize(link->dm,&bs);CHKERRQ(ierr); 1019520db06cSJed Brown ierr = ISSetBlockSize((*is)[cnt],bs);CHKERRQ(ierr); 1020520db06cSJed Brown } 102187c85e80SJed Brown PetscFunctionReturn(0); 102287c85e80SJed Brown } 102387c85e80SJed Brown 102447c6ae99SBarry Smith /*@C 102547c6ae99SBarry Smith DMCompositeGetGlobalISs - Gets the index sets for each composed object 102647c6ae99SBarry Smith 1027d083f849SBarry Smith Collective on dm 102847c6ae99SBarry Smith 102947c6ae99SBarry Smith Input Parameter: 103047c6ae99SBarry Smith . dm - the packer object 103147c6ae99SBarry Smith 103247c6ae99SBarry Smith Output Parameters: 103347c6ae99SBarry Smith . is - the array of index sets 103447c6ae99SBarry Smith 103547c6ae99SBarry Smith Level: advanced 103647c6ae99SBarry Smith 103747c6ae99SBarry Smith Notes: 103847c6ae99SBarry Smith The is entries should be destroyed with ISDestroy(), the is array should be freed with PetscFree() 103947c6ae99SBarry Smith 104047c6ae99SBarry Smith These could be used to extract a subset of vector entries for a "multi-physics" preconditioner 104147c6ae99SBarry Smith 10426eb61c8cSJed Brown Use DMCompositeGetLocalISs() for index sets in the packed local numbering, and 10436eb61c8cSJed Brown DMCompositeGetISLocalToGlobalMappings() for to map local sub-DM (including ghost) indices to packed global 10446eb61c8cSJed Brown indices. 104547c6ae99SBarry Smith 1046f3cb0f7eSJed Brown Fortran Notes: 1047f3cb0f7eSJed Brown 1048f3cb0f7eSJed Brown The output argument 'is' must be an allocated array of sufficient length, which can be learned using DMCompositeGetNumberDM(). 1049f3cb0f7eSJed Brown 10509ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 105147c6ae99SBarry Smith DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 105247c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 105347c6ae99SBarry Smith 105447c6ae99SBarry Smith @*/ 10557087cfbeSBarry Smith PetscErrorCode DMCompositeGetGlobalISs(DM dm,IS *is[]) 105647c6ae99SBarry Smith { 105747c6ae99SBarry Smith PetscErrorCode ierr; 105866bb578eSMark Adams PetscInt cnt = 0; 105947c6ae99SBarry Smith struct DMCompositeLink *next; 106047c6ae99SBarry Smith PetscMPIInt rank; 106147c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 106271b14b3eSStefano Zampini PetscBool flg; 106347c6ae99SBarry Smith 106447c6ae99SBarry Smith PetscFunctionBegin; 106547c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 106671b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 106771b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 106871b14b3eSStefano Zampini if (!dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Must call DMSetUp() before"); 1069854ce69bSBarry Smith ierr = PetscMalloc1(com->nDM,is);CHKERRQ(ierr); 107047c6ae99SBarry Smith next = com->next; 1071ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 107247c6ae99SBarry Smith 107347c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 107447c6ae99SBarry Smith while (next) { 1075e5e52638SMatthew G. Knepley PetscDS prob; 1076e5e52638SMatthew G. Knepley 107766bb578eSMark Adams ierr = ISCreateStride(PetscObjectComm((PetscObject)dm),next->n,next->grstart,1,&(*is)[cnt]);CHKERRQ(ierr); 1078e5e52638SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1079e5e52638SMatthew G. Knepley if (prob) { 108065c226d8SMatthew G. Knepley MatNullSpace space; 108165c226d8SMatthew G. Knepley Mat pmat; 10820f21e855SMatthew G. Knepley PetscObject disc; 10830f21e855SMatthew G. Knepley PetscInt Nf; 108465c226d8SMatthew G. Knepley 1085e5e52638SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 1086f24dd8d2SMatthew G. Knepley if (cnt < Nf) { 1087e5e52638SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, cnt, &disc);CHKERRQ(ierr); 10880f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "nullspace", (PetscObject*) &space);CHKERRQ(ierr); 1089aac2dd2dSMatthew G. Knepley if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nullspace", (PetscObject) space);CHKERRQ(ierr);} 10900f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "nearnullspace", (PetscObject*) &space);CHKERRQ(ierr); 1091aac2dd2dSMatthew G. Knepley if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nearnullspace", (PetscObject) space);CHKERRQ(ierr);} 10920f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "pmat", (PetscObject*) &pmat);CHKERRQ(ierr); 1093aac2dd2dSMatthew G. Knepley if (pmat) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "pmat", (PetscObject) pmat);CHKERRQ(ierr);} 109465c226d8SMatthew G. Knepley } 1095f24dd8d2SMatthew G. Knepley } 109647c6ae99SBarry Smith cnt++; 109747c6ae99SBarry Smith next = next->next; 109847c6ae99SBarry Smith } 109947c6ae99SBarry Smith PetscFunctionReturn(0); 110047c6ae99SBarry Smith } 110147c6ae99SBarry Smith 110221c9b008SJed Brown PetscErrorCode DMCreateFieldIS_Composite(DM dm, PetscInt *numFields,char ***fieldNames, IS **fields) 11034d343eeaSMatthew G Knepley { 11044d343eeaSMatthew G Knepley PetscInt nDM; 11054d343eeaSMatthew G Knepley DM *dms; 11064d343eeaSMatthew G Knepley PetscInt i; 11074d343eeaSMatthew G Knepley PetscErrorCode ierr; 11084d343eeaSMatthew G Knepley 11094d343eeaSMatthew G Knepley PetscFunctionBegin; 11104d343eeaSMatthew G Knepley ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 11118865f1eaSKarl Rupp if (numFields) *numFields = nDM; 11124d343eeaSMatthew G Knepley ierr = DMCompositeGetGlobalISs(dm, fields);CHKERRQ(ierr); 11134d343eeaSMatthew G Knepley if (fieldNames) { 1114785e854fSJed Brown ierr = PetscMalloc1(nDM, &dms);CHKERRQ(ierr); 1115785e854fSJed Brown ierr = PetscMalloc1(nDM, fieldNames);CHKERRQ(ierr); 11164d343eeaSMatthew G Knepley ierr = DMCompositeGetEntriesArray(dm, dms);CHKERRQ(ierr); 11174d343eeaSMatthew G Knepley for (i=0; i<nDM; i++) { 11184d343eeaSMatthew G Knepley char buf[256]; 11194d343eeaSMatthew G Knepley const char *splitname; 11204d343eeaSMatthew G Knepley 11214d343eeaSMatthew G Knepley /* Split naming precedence: object name, prefix, number */ 11224d343eeaSMatthew G Knepley splitname = ((PetscObject) dm)->name; 11234d343eeaSMatthew G Knepley if (!splitname) { 11244d343eeaSMatthew G Knepley ierr = PetscObjectGetOptionsPrefix((PetscObject)dms[i],&splitname);CHKERRQ(ierr); 11254d343eeaSMatthew G Knepley if (splitname) { 11264d343eeaSMatthew G Knepley size_t len; 11278caf3d72SBarry Smith ierr = PetscStrncpy(buf,splitname,sizeof(buf));CHKERRQ(ierr); 11288caf3d72SBarry Smith buf[sizeof(buf) - 1] = 0; 11294d343eeaSMatthew G Knepley ierr = PetscStrlen(buf,&len);CHKERRQ(ierr); 11304d343eeaSMatthew G Knepley if (buf[len-1] == '_') buf[len-1] = 0; /* Remove trailing underscore if it was used */ 11314d343eeaSMatthew G Knepley splitname = buf; 11324d343eeaSMatthew G Knepley } 11334d343eeaSMatthew G Knepley } 11344d343eeaSMatthew G Knepley if (!splitname) { 11358caf3d72SBarry Smith ierr = PetscSNPrintf(buf,sizeof(buf),"%D",i);CHKERRQ(ierr); 11364d343eeaSMatthew G Knepley splitname = buf; 11374d343eeaSMatthew G Knepley } 113821c9b008SJed Brown ierr = PetscStrallocpy(splitname,&(*fieldNames)[i]);CHKERRQ(ierr); 11394d343eeaSMatthew G Knepley } 11404d343eeaSMatthew G Knepley ierr = PetscFree(dms);CHKERRQ(ierr); 11414d343eeaSMatthew G Knepley } 11424d343eeaSMatthew G Knepley PetscFunctionReturn(0); 11434d343eeaSMatthew G Knepley } 11444d343eeaSMatthew G Knepley 1145e7c4fc90SDmitry Karpeev /* 1146e7c4fc90SDmitry Karpeev This could take over from DMCreateFieldIS(), as it is more general, 11470298fd71SBarry Smith making DMCreateFieldIS() a special case -- calling with dmlist == NULL; 1148e7c4fc90SDmitry Karpeev At this point it's probably best to be less intrusive, however. 1149e7c4fc90SDmitry Karpeev */ 115016621825SDmitry Karpeev PetscErrorCode DMCreateFieldDecomposition_Composite(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 1151e7c4fc90SDmitry Karpeev { 1152e7c4fc90SDmitry Karpeev PetscInt nDM; 1153e7c4fc90SDmitry Karpeev PetscInt i; 1154e7c4fc90SDmitry Karpeev PetscErrorCode ierr; 1155e7c4fc90SDmitry Karpeev 1156e7c4fc90SDmitry Karpeev PetscFunctionBegin; 1157e7c4fc90SDmitry Karpeev ierr = DMCreateFieldIS_Composite(dm, len, namelist, islist);CHKERRQ(ierr); 1158e7c4fc90SDmitry Karpeev if (dmlist) { 1159e7c4fc90SDmitry Karpeev ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 1160785e854fSJed Brown ierr = PetscMalloc1(nDM, dmlist);CHKERRQ(ierr); 1161e7c4fc90SDmitry Karpeev ierr = DMCompositeGetEntriesArray(dm, *dmlist);CHKERRQ(ierr); 1162e7c4fc90SDmitry Karpeev for (i=0; i<nDM; i++) { 1163e7c4fc90SDmitry Karpeev ierr = PetscObjectReference((PetscObject)((*dmlist)[i]));CHKERRQ(ierr); 1164e7c4fc90SDmitry Karpeev } 1165e7c4fc90SDmitry Karpeev } 1166e7c4fc90SDmitry Karpeev PetscFunctionReturn(0); 1167e7c4fc90SDmitry Karpeev } 1168e7c4fc90SDmitry Karpeev 1169e7c4fc90SDmitry Karpeev 1170e7c4fc90SDmitry Karpeev 117147c6ae99SBarry Smith /* -------------------------------------------------------------------------------------*/ 117247c6ae99SBarry Smith /*@C 11739ae5db72SJed Brown DMCompositeGetLocalVectors - Gets local vectors for each part of a DMComposite. 117447c6ae99SBarry Smith Use DMCompositeRestoreLocalVectors() to return them. 117547c6ae99SBarry Smith 117647c6ae99SBarry Smith Not Collective 117747c6ae99SBarry Smith 117847c6ae99SBarry Smith Input Parameter: 117947c6ae99SBarry Smith . dm - the packer object 118047c6ae99SBarry Smith 118147c6ae99SBarry Smith Output Parameter: 11829ae5db72SJed Brown . Vec ... - the individual sequential Vecs 118347c6ae99SBarry Smith 118447c6ae99SBarry Smith Level: advanced 118547c6ae99SBarry Smith 1186f5f57ec0SBarry Smith Not available from Fortran 1187f5f57ec0SBarry Smith 11889ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 11896eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 119047c6ae99SBarry Smith DMCompositeRestoreLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 119147c6ae99SBarry Smith 119247c6ae99SBarry Smith @*/ 11937087cfbeSBarry Smith PetscErrorCode DMCompositeGetLocalVectors(DM dm,...) 119447c6ae99SBarry Smith { 119547c6ae99SBarry Smith va_list Argp; 119647c6ae99SBarry Smith PetscErrorCode ierr; 119747c6ae99SBarry Smith struct DMCompositeLink *next; 119847c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 119971b14b3eSStefano Zampini PetscBool flg; 120047c6ae99SBarry Smith 120147c6ae99SBarry Smith PetscFunctionBegin; 120247c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 120371b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 120471b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 120547c6ae99SBarry Smith next = com->next; 120647c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 120747c6ae99SBarry Smith va_start(Argp,dm); 120847c6ae99SBarry Smith while (next) { 120947c6ae99SBarry Smith Vec *vec; 121047c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 121106930112SJed Brown if (vec) {ierr = DMGetLocalVector(next->dm,vec);CHKERRQ(ierr);} 121247c6ae99SBarry Smith next = next->next; 121347c6ae99SBarry Smith } 121447c6ae99SBarry Smith va_end(Argp); 121547c6ae99SBarry Smith PetscFunctionReturn(0); 121647c6ae99SBarry Smith } 121747c6ae99SBarry Smith 121847c6ae99SBarry Smith /*@C 12199ae5db72SJed Brown DMCompositeRestoreLocalVectors - Restores local vectors for each part of a DMComposite. 122047c6ae99SBarry Smith 122147c6ae99SBarry Smith Not Collective 122247c6ae99SBarry Smith 122347c6ae99SBarry Smith Input Parameter: 122447c6ae99SBarry Smith . dm - the packer object 122547c6ae99SBarry Smith 122647c6ae99SBarry Smith Output Parameter: 12279ae5db72SJed Brown . Vec ... - the individual sequential Vecs 122847c6ae99SBarry Smith 122947c6ae99SBarry Smith Level: advanced 123047c6ae99SBarry Smith 1231f5f57ec0SBarry Smith Not available from Fortran 1232f5f57ec0SBarry Smith 12339ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 12346eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 123547c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 123647c6ae99SBarry Smith 123747c6ae99SBarry Smith @*/ 12387087cfbeSBarry Smith PetscErrorCode DMCompositeRestoreLocalVectors(DM dm,...) 123947c6ae99SBarry Smith { 124047c6ae99SBarry Smith va_list Argp; 124147c6ae99SBarry Smith PetscErrorCode ierr; 124247c6ae99SBarry Smith struct DMCompositeLink *next; 124347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 124471b14b3eSStefano Zampini PetscBool flg; 124547c6ae99SBarry Smith 124647c6ae99SBarry Smith PetscFunctionBegin; 124747c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 124871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 124971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 125047c6ae99SBarry Smith next = com->next; 125147c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 125247c6ae99SBarry Smith va_start(Argp,dm); 125347c6ae99SBarry Smith while (next) { 125447c6ae99SBarry Smith Vec *vec; 125547c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 125606930112SJed Brown if (vec) {ierr = DMRestoreLocalVector(next->dm,vec);CHKERRQ(ierr);} 125747c6ae99SBarry Smith next = next->next; 125847c6ae99SBarry Smith } 125947c6ae99SBarry Smith va_end(Argp); 126047c6ae99SBarry Smith PetscFunctionReturn(0); 126147c6ae99SBarry Smith } 126247c6ae99SBarry Smith 126347c6ae99SBarry Smith /* -------------------------------------------------------------------------------------*/ 126447c6ae99SBarry Smith /*@C 12659ae5db72SJed Brown DMCompositeGetEntries - Gets the DM for each entry in a DMComposite. 126647c6ae99SBarry Smith 126747c6ae99SBarry Smith Not Collective 126847c6ae99SBarry Smith 126947c6ae99SBarry Smith Input Parameter: 127047c6ae99SBarry Smith . dm - the packer object 127147c6ae99SBarry Smith 127247c6ae99SBarry Smith Output Parameter: 12739ae5db72SJed Brown . DM ... - the individual entries (DMs) 127447c6ae99SBarry Smith 127547c6ae99SBarry Smith Level: advanced 127647c6ae99SBarry Smith 127795452b02SPatrick Sanan Fortran Notes: 127895452b02SPatrick Sanan Available as DMCompositeGetEntries() for one output DM, DMCompositeGetEntries2() for 2, etc 1279f5f57ec0SBarry Smith 12802fa5ba8aSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntriesArray() 12816eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 128247c6ae99SBarry Smith DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 128347c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 128447c6ae99SBarry Smith 128547c6ae99SBarry Smith @*/ 12867087cfbeSBarry Smith PetscErrorCode DMCompositeGetEntries(DM dm,...) 128747c6ae99SBarry Smith { 128847c6ae99SBarry Smith va_list Argp; 128947c6ae99SBarry Smith struct DMCompositeLink *next; 129047c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 129171b14b3eSStefano Zampini PetscBool flg; 129271b14b3eSStefano Zampini PetscErrorCode ierr; 129347c6ae99SBarry Smith 129447c6ae99SBarry Smith PetscFunctionBegin; 129547c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 129671b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 129771b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 129847c6ae99SBarry Smith next = com->next; 129947c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 130047c6ae99SBarry Smith va_start(Argp,dm); 130147c6ae99SBarry Smith while (next) { 130247c6ae99SBarry Smith DM *dmn; 130347c6ae99SBarry Smith dmn = va_arg(Argp, DM*); 13049ae5db72SJed Brown if (dmn) *dmn = next->dm; 130547c6ae99SBarry Smith next = next->next; 130647c6ae99SBarry Smith } 130747c6ae99SBarry Smith va_end(Argp); 130847c6ae99SBarry Smith PetscFunctionReturn(0); 130947c6ae99SBarry Smith } 131047c6ae99SBarry Smith 1311dbab29e1SMark F. Adams /*@C 13122fa5ba8aSJed Brown DMCompositeGetEntriesArray - Gets the DM for each entry in a DMComposite. 13132fa5ba8aSJed Brown 13142fa5ba8aSJed Brown Not Collective 13152fa5ba8aSJed Brown 13162fa5ba8aSJed Brown Input Parameter: 1317907376e6SBarry Smith . dm - the packer object 1318907376e6SBarry Smith 1319907376e6SBarry Smith Output Parameter: 1320907376e6SBarry Smith . dms - array of sufficient length (see DMCompositeGetNumberDM()) to hold the individual DMs 13212fa5ba8aSJed Brown 13222fa5ba8aSJed Brown Level: advanced 13232fa5ba8aSJed Brown 13242fa5ba8aSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntries() 13252fa5ba8aSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 13262fa5ba8aSJed Brown DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 13272fa5ba8aSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 13282fa5ba8aSJed Brown 13292fa5ba8aSJed Brown @*/ 13302fa5ba8aSJed Brown PetscErrorCode DMCompositeGetEntriesArray(DM dm,DM dms[]) 13312fa5ba8aSJed Brown { 13322fa5ba8aSJed Brown struct DMCompositeLink *next; 13332fa5ba8aSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 13342fa5ba8aSJed Brown PetscInt i; 133571b14b3eSStefano Zampini PetscBool flg; 133671b14b3eSStefano Zampini PetscErrorCode ierr; 13372fa5ba8aSJed Brown 13382fa5ba8aSJed Brown PetscFunctionBegin; 13392fa5ba8aSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 134071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 134171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 13422fa5ba8aSJed Brown /* loop over packed objects, handling one at at time */ 13432fa5ba8aSJed Brown for (next=com->next,i=0; next; next=next->next,i++) dms[i] = next->dm; 13442fa5ba8aSJed Brown PetscFunctionReturn(0); 13452fa5ba8aSJed Brown } 13462fa5ba8aSJed Brown 1347e10fd815SStefano Zampini typedef struct { 1348e10fd815SStefano Zampini DM dm; 1349e10fd815SStefano Zampini PetscViewer *subv; 1350e10fd815SStefano Zampini Vec *vecs; 1351e10fd815SStefano Zampini } GLVisViewerCtx; 1352e10fd815SStefano Zampini 1353e10fd815SStefano Zampini static PetscErrorCode DestroyGLVisViewerCtx_Private(void *vctx) 1354e10fd815SStefano Zampini { 1355e10fd815SStefano Zampini GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx; 1356e10fd815SStefano Zampini PetscInt i,n; 1357e10fd815SStefano Zampini PetscErrorCode ierr; 1358e10fd815SStefano Zampini 1359e10fd815SStefano Zampini PetscFunctionBegin; 1360e10fd815SStefano Zampini ierr = DMCompositeGetNumberDM(ctx->dm,&n);CHKERRQ(ierr); 1361e10fd815SStefano Zampini for (i = 0; i < n; i++) { 1362e10fd815SStefano Zampini ierr = PetscViewerDestroy(&ctx->subv[i]);CHKERRQ(ierr); 1363e10fd815SStefano Zampini } 1364e10fd815SStefano Zampini ierr = PetscFree2(ctx->subv,ctx->vecs);CHKERRQ(ierr); 1365e10fd815SStefano Zampini ierr = DMDestroy(&ctx->dm);CHKERRQ(ierr); 1366e10fd815SStefano Zampini ierr = PetscFree(ctx);CHKERRQ(ierr); 1367e10fd815SStefano Zampini PetscFunctionReturn(0); 1368e10fd815SStefano Zampini } 1369e10fd815SStefano Zampini 1370e10fd815SStefano Zampini static PetscErrorCode DMCompositeSampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXfield[], void *vctx) 1371e10fd815SStefano Zampini { 1372e10fd815SStefano Zampini Vec X = (Vec)oX; 1373e10fd815SStefano Zampini GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx; 1374e10fd815SStefano Zampini PetscInt i,n,cumf; 1375e10fd815SStefano Zampini PetscErrorCode ierr; 1376e10fd815SStefano Zampini 1377e10fd815SStefano Zampini PetscFunctionBegin; 1378e10fd815SStefano Zampini ierr = DMCompositeGetNumberDM(ctx->dm,&n);CHKERRQ(ierr); 1379e10fd815SStefano Zampini ierr = DMCompositeGetAccessArray(ctx->dm,X,n,NULL,ctx->vecs);CHKERRQ(ierr); 1380e10fd815SStefano Zampini for (i = 0, cumf = 0; i < n; i++) { 1381e10fd815SStefano Zampini PetscErrorCode (*g2l)(PetscObject,PetscInt,PetscObject[],void*); 1382e10fd815SStefano Zampini void *fctx; 1383e10fd815SStefano Zampini PetscInt nfi; 1384e10fd815SStefano Zampini 1385e10fd815SStefano Zampini ierr = PetscViewerGLVisGetFields_Private(ctx->subv[i],&nfi,NULL,NULL,&g2l,NULL,&fctx);CHKERRQ(ierr); 1386e10fd815SStefano Zampini if (!nfi) continue; 1387e10fd815SStefano Zampini if (g2l) { 1388e10fd815SStefano Zampini ierr = (*g2l)((PetscObject)ctx->vecs[i],nfi,oXfield+cumf,fctx);CHKERRQ(ierr); 1389e10fd815SStefano Zampini } else { 1390e10fd815SStefano Zampini ierr = VecCopy(ctx->vecs[i],(Vec)(oXfield[cumf]));CHKERRQ(ierr); 1391e10fd815SStefano Zampini } 1392e10fd815SStefano Zampini cumf += nfi; 1393e10fd815SStefano Zampini } 1394e10fd815SStefano Zampini ierr = DMCompositeRestoreAccessArray(ctx->dm,X,n,NULL,ctx->vecs);CHKERRQ(ierr); 1395e10fd815SStefano Zampini PetscFunctionReturn(0); 1396e10fd815SStefano Zampini } 1397e10fd815SStefano Zampini 1398e10fd815SStefano Zampini static PetscErrorCode DMSetUpGLVisViewer_Composite(PetscObject odm, PetscViewer viewer) 1399e10fd815SStefano Zampini { 1400e10fd815SStefano Zampini DM dm = (DM)odm, *dms; 1401e10fd815SStefano Zampini Vec *Ufds; 1402e10fd815SStefano Zampini GLVisViewerCtx *ctx; 1403e10fd815SStefano Zampini PetscInt i,n,tnf,*sdim; 1404e10fd815SStefano Zampini char **fecs; 1405e10fd815SStefano Zampini PetscErrorCode ierr; 1406e10fd815SStefano Zampini 1407e10fd815SStefano Zampini PetscFunctionBegin; 1408e10fd815SStefano Zampini ierr = PetscNew(&ctx);CHKERRQ(ierr); 1409e10fd815SStefano Zampini ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 1410e10fd815SStefano Zampini ctx->dm = dm; 1411e10fd815SStefano Zampini ierr = DMCompositeGetNumberDM(dm,&n);CHKERRQ(ierr); 1412e10fd815SStefano Zampini ierr = PetscMalloc1(n,&dms);CHKERRQ(ierr); 1413e10fd815SStefano Zampini ierr = DMCompositeGetEntriesArray(dm,dms);CHKERRQ(ierr); 1414e10fd815SStefano Zampini ierr = PetscMalloc2(n,&ctx->subv,n,&ctx->vecs);CHKERRQ(ierr); 1415e10fd815SStefano Zampini for (i = 0, tnf = 0; i < n; i++) { 1416e10fd815SStefano Zampini PetscInt nf; 1417e10fd815SStefano Zampini 1418e10fd815SStefano Zampini ierr = PetscViewerCreate(PetscObjectComm(odm),&ctx->subv[i]);CHKERRQ(ierr); 1419e10fd815SStefano Zampini ierr = PetscViewerSetType(ctx->subv[i],PETSCVIEWERGLVIS);CHKERRQ(ierr); 1420e10fd815SStefano Zampini ierr = PetscViewerGLVisSetDM_Private(ctx->subv[i],(PetscObject)dms[i]);CHKERRQ(ierr); 1421e10fd815SStefano Zampini ierr = PetscViewerGLVisGetFields_Private(ctx->subv[i],&nf,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr); 1422e10fd815SStefano Zampini tnf += nf; 1423e10fd815SStefano Zampini } 1424e10fd815SStefano Zampini ierr = PetscFree(dms);CHKERRQ(ierr); 1425e10fd815SStefano Zampini ierr = PetscMalloc3(tnf,&fecs,tnf,&sdim,tnf,&Ufds);CHKERRQ(ierr); 1426e10fd815SStefano Zampini for (i = 0, tnf = 0; i < n; i++) { 1427e10fd815SStefano Zampini PetscInt *sd,nf,f; 1428e10fd815SStefano Zampini const char **fec; 1429e10fd815SStefano Zampini Vec *Uf; 1430e10fd815SStefano Zampini 1431e10fd815SStefano Zampini ierr = PetscViewerGLVisGetFields_Private(ctx->subv[i],&nf,&fec,&sd,NULL,(PetscObject**)&Uf,NULL);CHKERRQ(ierr); 1432e10fd815SStefano Zampini for (f = 0; f < nf; f++) { 1433e10fd815SStefano Zampini ierr = PetscStrallocpy(fec[f],&fecs[tnf+f]);CHKERRQ(ierr); 1434e10fd815SStefano Zampini Ufds[tnf+f] = Uf[f]; 1435e10fd815SStefano Zampini sdim[tnf+f] = sd[f]; 1436e10fd815SStefano Zampini } 1437e10fd815SStefano Zampini tnf += nf; 1438e10fd815SStefano Zampini } 1439e10fd815SStefano Zampini ierr = PetscViewerGLVisSetFields(viewer,tnf,(const char**)fecs,sdim,DMCompositeSampleGLVisFields_Private,(PetscObject*)Ufds,ctx,DestroyGLVisViewerCtx_Private);CHKERRQ(ierr); 1440e10fd815SStefano Zampini for (i = 0; i < tnf; i++) { 1441e10fd815SStefano Zampini ierr = PetscFree(fecs[i]);CHKERRQ(ierr); 1442e10fd815SStefano Zampini } 1443e10fd815SStefano Zampini ierr = PetscFree3(fecs,sdim,Ufds);CHKERRQ(ierr); 1444e10fd815SStefano Zampini PetscFunctionReturn(0); 1445e10fd815SStefano Zampini } 1446e10fd815SStefano Zampini 14477087cfbeSBarry Smith PetscErrorCode DMRefine_Composite(DM dmi,MPI_Comm comm,DM *fine) 144847c6ae99SBarry Smith { 144947c6ae99SBarry Smith PetscErrorCode ierr; 145047c6ae99SBarry Smith struct DMCompositeLink *next; 145147c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dmi->data; 145247c6ae99SBarry Smith DM dm; 145347c6ae99SBarry Smith 145447c6ae99SBarry Smith PetscFunctionBegin; 145547c6ae99SBarry Smith PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1456ce94432eSBarry Smith if (comm == MPI_COMM_NULL) { 1457ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1458ce94432eSBarry Smith } 14592ce3a92bSJed Brown ierr = DMSetUp(dmi);CHKERRQ(ierr); 146047c6ae99SBarry Smith next = com->next; 146147c6ae99SBarry Smith ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 146247c6ae99SBarry Smith 146347c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 146447c6ae99SBarry Smith while (next) { 146547c6ae99SBarry Smith ierr = DMRefine(next->dm,comm,&dm);CHKERRQ(ierr); 146647c6ae99SBarry Smith ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 146747c6ae99SBarry Smith ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 146847c6ae99SBarry Smith next = next->next; 146947c6ae99SBarry Smith } 147047c6ae99SBarry Smith PetscFunctionReturn(0); 147147c6ae99SBarry Smith } 147247c6ae99SBarry Smith 147314354c39SJed Brown PetscErrorCode DMCoarsen_Composite(DM dmi,MPI_Comm comm,DM *fine) 147414354c39SJed Brown { 147514354c39SJed Brown PetscErrorCode ierr; 147614354c39SJed Brown struct DMCompositeLink *next; 147714354c39SJed Brown DM_Composite *com = (DM_Composite*)dmi->data; 147814354c39SJed Brown DM dm; 147914354c39SJed Brown 148014354c39SJed Brown PetscFunctionBegin; 148114354c39SJed Brown PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 14822ce3a92bSJed Brown ierr = DMSetUp(dmi);CHKERRQ(ierr); 14832ee06e3bSJed Brown if (comm == MPI_COMM_NULL) { 148425296bd5SBarry Smith ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 148525296bd5SBarry Smith } 148614354c39SJed Brown next = com->next; 148714354c39SJed Brown ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 148814354c39SJed Brown 148914354c39SJed Brown /* loop over packed objects, handling one at at time */ 149014354c39SJed Brown while (next) { 149114354c39SJed Brown ierr = DMCoarsen(next->dm,comm,&dm);CHKERRQ(ierr); 149214354c39SJed Brown ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 149314354c39SJed Brown ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 149414354c39SJed Brown next = next->next; 149514354c39SJed Brown } 149614354c39SJed Brown PetscFunctionReturn(0); 149714354c39SJed Brown } 149847c6ae99SBarry Smith 1499e727c939SJed Brown PetscErrorCode DMCreateInterpolation_Composite(DM coarse,DM fine,Mat *A,Vec *v) 150047c6ae99SBarry Smith { 150147c6ae99SBarry Smith PetscErrorCode ierr; 15029ae5db72SJed Brown PetscInt m,n,M,N,nDM,i; 150347c6ae99SBarry Smith struct DMCompositeLink *nextc; 150447c6ae99SBarry Smith struct DMCompositeLink *nextf; 150525296bd5SBarry Smith Vec gcoarse,gfine,*vecs; 150647c6ae99SBarry Smith DM_Composite *comcoarse = (DM_Composite*)coarse->data; 150747c6ae99SBarry Smith DM_Composite *comfine = (DM_Composite*)fine->data; 15089ae5db72SJed Brown Mat *mats; 150947c6ae99SBarry Smith 151047c6ae99SBarry Smith PetscFunctionBegin; 151147c6ae99SBarry Smith PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 151247c6ae99SBarry Smith PetscValidHeaderSpecific(fine,DM_CLASSID,2); 1513f692024eSJed Brown ierr = DMSetUp(coarse);CHKERRQ(ierr); 1514f692024eSJed Brown ierr = DMSetUp(fine);CHKERRQ(ierr); 151547c6ae99SBarry Smith /* use global vectors only for determining matrix layout */ 15169ae5db72SJed Brown ierr = DMGetGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 15179ae5db72SJed Brown ierr = DMGetGlobalVector(fine,&gfine);CHKERRQ(ierr); 151847c6ae99SBarry Smith ierr = VecGetLocalSize(gcoarse,&n);CHKERRQ(ierr); 151947c6ae99SBarry Smith ierr = VecGetLocalSize(gfine,&m);CHKERRQ(ierr); 152047c6ae99SBarry Smith ierr = VecGetSize(gcoarse,&N);CHKERRQ(ierr); 152147c6ae99SBarry Smith ierr = VecGetSize(gfine,&M);CHKERRQ(ierr); 15229ae5db72SJed Brown ierr = DMRestoreGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 15239ae5db72SJed Brown ierr = DMRestoreGlobalVector(fine,&gfine);CHKERRQ(ierr); 152447c6ae99SBarry Smith 15259ae5db72SJed Brown nDM = comfine->nDM; 1526ce94432eSBarry Smith if (nDM != comcoarse->nDM) SETERRQ2(PetscObjectComm((PetscObject)fine),PETSC_ERR_ARG_INCOMP,"Fine DMComposite has %D entries, but coarse has %D",nDM,comcoarse->nDM); 15271795a4d1SJed Brown ierr = PetscCalloc1(nDM*nDM,&mats);CHKERRQ(ierr); 152825296bd5SBarry Smith if (v) { 15291795a4d1SJed Brown ierr = PetscCalloc1(nDM,&vecs);CHKERRQ(ierr); 153025296bd5SBarry Smith } 153147c6ae99SBarry Smith 153247c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 15339ae5db72SJed Brown for (nextc=comcoarse->next,nextf=comfine->next,i=0; nextc; nextc=nextc->next,nextf=nextf->next,i++) { 153425296bd5SBarry Smith if (!v) { 15350298fd71SBarry Smith ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],NULL);CHKERRQ(ierr); 153625296bd5SBarry Smith } else { 153725296bd5SBarry Smith ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],&vecs[i]);CHKERRQ(ierr); 153825296bd5SBarry Smith } 153947c6ae99SBarry Smith } 1540ce94432eSBarry Smith ierr = MatCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,nDM,NULL,mats,A);CHKERRQ(ierr); 154125296bd5SBarry Smith if (v) { 1542ce94432eSBarry Smith ierr = VecCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,vecs,v);CHKERRQ(ierr); 154325296bd5SBarry Smith } 15449ae5db72SJed Brown for (i=0; i<nDM*nDM; i++) {ierr = MatDestroy(&mats[i]);CHKERRQ(ierr);} 15459ae5db72SJed Brown ierr = PetscFree(mats);CHKERRQ(ierr); 154625296bd5SBarry Smith if (v) { 154725296bd5SBarry Smith for (i=0; i<nDM; i++) {ierr = VecDestroy(&vecs[i]);CHKERRQ(ierr);} 154825296bd5SBarry Smith ierr = PetscFree(vecs);CHKERRQ(ierr); 154925296bd5SBarry Smith } 155047c6ae99SBarry Smith PetscFunctionReturn(0); 155147c6ae99SBarry Smith } 155247c6ae99SBarry Smith 1553184d77edSJed Brown static PetscErrorCode DMGetLocalToGlobalMapping_Composite(DM dm) 15541411c6eeSJed Brown { 15551411c6eeSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 15561411c6eeSJed Brown ISLocalToGlobalMapping *ltogs; 1557f7efa3c7SJed Brown PetscInt i; 15581411c6eeSJed Brown PetscErrorCode ierr; 15591411c6eeSJed Brown 15601411c6eeSJed Brown PetscFunctionBegin; 15611411c6eeSJed Brown /* Set the ISLocalToGlobalMapping on the new matrix */ 15621411c6eeSJed Brown ierr = DMCompositeGetISLocalToGlobalMappings(dm,<ogs);CHKERRQ(ierr); 1563ce94432eSBarry Smith ierr = ISLocalToGlobalMappingConcatenate(PetscObjectComm((PetscObject)dm),com->nDM,ltogs,&dm->ltogmap);CHKERRQ(ierr); 15649ae5db72SJed Brown for (i=0; i<com->nDM; i++) {ierr = ISLocalToGlobalMappingDestroy(<ogs[i]);CHKERRQ(ierr);} 15651411c6eeSJed Brown ierr = PetscFree(ltogs);CHKERRQ(ierr); 15661411c6eeSJed Brown PetscFunctionReturn(0); 15671411c6eeSJed Brown } 15681411c6eeSJed Brown 15691411c6eeSJed Brown 1570b412c318SBarry Smith PetscErrorCode DMCreateColoring_Composite(DM dm,ISColoringType ctype,ISColoring *coloring) 157147c6ae99SBarry Smith { 157247c6ae99SBarry Smith PetscErrorCode ierr; 157347c6ae99SBarry Smith PetscInt n,i,cnt; 157447c6ae99SBarry Smith ISColoringValue *colors; 157547c6ae99SBarry Smith PetscBool dense = PETSC_FALSE; 157647c6ae99SBarry Smith ISColoringValue maxcol = 0; 157747c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 157847c6ae99SBarry Smith 157947c6ae99SBarry Smith PetscFunctionBegin; 158047c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 15815bdb020cSBarry Smith if (ctype == IS_COLORING_LOCAL) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Only global coloring supported"); 1582e3247f34SBarry Smith else if (ctype == IS_COLORING_GLOBAL) { 158347c6ae99SBarry Smith n = com->n; 1584ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Unknown ISColoringType"); 1585785e854fSJed Brown ierr = PetscMalloc1(n,&colors);CHKERRQ(ierr); /* freed in ISColoringDestroy() */ 158647c6ae99SBarry Smith 1587c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)dm)->options,((PetscObject)dm)->prefix,"-dmcomposite_dense_jacobian",&dense,NULL);CHKERRQ(ierr); 158847c6ae99SBarry Smith if (dense) { 158947c6ae99SBarry Smith for (i=0; i<n; i++) { 159047c6ae99SBarry Smith colors[i] = (ISColoringValue)(com->rstart + i); 159147c6ae99SBarry Smith } 159247c6ae99SBarry Smith maxcol = com->N; 159347c6ae99SBarry Smith } else { 159447c6ae99SBarry Smith struct DMCompositeLink *next = com->next; 159547c6ae99SBarry Smith PetscMPIInt rank; 159647c6ae99SBarry Smith 1597ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 159847c6ae99SBarry Smith cnt = 0; 159947c6ae99SBarry Smith while (next) { 160047c6ae99SBarry Smith ISColoring lcoloring; 160147c6ae99SBarry Smith 1602b412c318SBarry Smith ierr = DMCreateColoring(next->dm,IS_COLORING_GLOBAL,&lcoloring);CHKERRQ(ierr); 160347c6ae99SBarry Smith for (i=0; i<lcoloring->N; i++) { 160447c6ae99SBarry Smith colors[cnt++] = maxcol + lcoloring->colors[i]; 160547c6ae99SBarry Smith } 160647c6ae99SBarry Smith maxcol += lcoloring->n; 1607fcfd50ebSBarry Smith ierr = ISColoringDestroy(&lcoloring);CHKERRQ(ierr); 160847c6ae99SBarry Smith next = next->next; 160947c6ae99SBarry Smith } 161047c6ae99SBarry Smith } 1611aaf3ff59SMatthew G. Knepley ierr = ISColoringCreate(PetscObjectComm((PetscObject)dm),maxcol,n,colors,PETSC_OWN_POINTER,coloring);CHKERRQ(ierr); 161247c6ae99SBarry Smith PetscFunctionReturn(0); 161347c6ae99SBarry Smith } 161447c6ae99SBarry Smith 16157087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalBegin_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 161647c6ae99SBarry Smith { 161747c6ae99SBarry Smith PetscErrorCode ierr; 161847c6ae99SBarry Smith struct DMCompositeLink *next; 161947c6ae99SBarry Smith PetscScalar *garray,*larray; 162047c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 162147c6ae99SBarry Smith 162247c6ae99SBarry Smith PetscFunctionBegin; 162347c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 162447c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 162539d35262SVincent Le Chenadec 162647c6ae99SBarry Smith if (!com->setup) { 1627d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 162847c6ae99SBarry Smith } 162939d35262SVincent Le Chenadec 163047c6ae99SBarry Smith ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 163147c6ae99SBarry Smith ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 163247c6ae99SBarry Smith 163347c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 163439d35262SVincent Le Chenadec next = com->next; 163547c6ae99SBarry Smith while (next) { 163647c6ae99SBarry Smith Vec local,global; 163747c6ae99SBarry Smith PetscInt N; 163847c6ae99SBarry Smith 163947c6ae99SBarry Smith ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 164047c6ae99SBarry Smith ierr = VecGetLocalSize(global,&N);CHKERRQ(ierr); 164147c6ae99SBarry Smith ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 164247c6ae99SBarry Smith ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 164347c6ae99SBarry Smith ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 164447c6ae99SBarry Smith ierr = DMGlobalToLocalBegin(next->dm,global,mode,local);CHKERRQ(ierr); 164547c6ae99SBarry Smith ierr = DMGlobalToLocalEnd(next->dm,global,mode,local);CHKERRQ(ierr); 164647c6ae99SBarry Smith ierr = VecResetArray(global);CHKERRQ(ierr); 164747c6ae99SBarry Smith ierr = VecResetArray(local);CHKERRQ(ierr); 164847c6ae99SBarry Smith ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 164939d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local);CHKERRQ(ierr); 165039d35262SVincent Le Chenadec 165106ebdd98SJed Brown larray += next->nlocal; 165239d35262SVincent Le Chenadec garray += next->n; 165347c6ae99SBarry Smith next = next->next; 165447c6ae99SBarry Smith } 165547c6ae99SBarry Smith 16560298fd71SBarry Smith ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 16570298fd71SBarry Smith ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 165847c6ae99SBarry Smith PetscFunctionReturn(0); 165947c6ae99SBarry Smith } 166047c6ae99SBarry Smith 16617087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalEnd_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 16620c010503SBarry Smith { 16630c010503SBarry Smith PetscFunctionBegin; 166439d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 166539d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 166639d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,4); 166739d35262SVincent Le Chenadec PetscFunctionReturn(0); 166839d35262SVincent Le Chenadec } 166939d35262SVincent Le Chenadec 167039d35262SVincent Le Chenadec PetscErrorCode DMLocalToGlobalBegin_Composite(DM dm,Vec lvec,InsertMode mode,Vec gvec) 167139d35262SVincent Le Chenadec { 167239d35262SVincent Le Chenadec PetscErrorCode ierr; 167339d35262SVincent Le Chenadec struct DMCompositeLink *next; 167439d35262SVincent Le Chenadec PetscScalar *larray,*garray; 167539d35262SVincent Le Chenadec DM_Composite *com = (DM_Composite*)dm->data; 167639d35262SVincent Le Chenadec 167739d35262SVincent Le Chenadec PetscFunctionBegin; 167839d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 167939d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,2); 168039d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,4); 168139d35262SVincent Le Chenadec 168239d35262SVincent Le Chenadec if (!com->setup) { 168339d35262SVincent Le Chenadec ierr = DMSetUp(dm);CHKERRQ(ierr); 168439d35262SVincent Le Chenadec } 168539d35262SVincent Le Chenadec 168639d35262SVincent Le Chenadec ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 168739d35262SVincent Le Chenadec ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 168839d35262SVincent Le Chenadec 168939d35262SVincent Le Chenadec /* loop over packed objects, handling one at at time */ 169039d35262SVincent Le Chenadec next = com->next; 169139d35262SVincent Le Chenadec while (next) { 169239d35262SVincent Le Chenadec Vec global,local; 169339d35262SVincent Le Chenadec 169439d35262SVincent Le Chenadec ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 169539d35262SVincent Le Chenadec ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 169639d35262SVincent Le Chenadec ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 169739d35262SVincent Le Chenadec ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 169839d35262SVincent Le Chenadec ierr = DMLocalToGlobalBegin(next->dm,local,mode,global);CHKERRQ(ierr); 169939d35262SVincent Le Chenadec ierr = DMLocalToGlobalEnd(next->dm,local,mode,global);CHKERRQ(ierr); 170039d35262SVincent Le Chenadec ierr = VecResetArray(local);CHKERRQ(ierr); 170139d35262SVincent Le Chenadec ierr = VecResetArray(global);CHKERRQ(ierr); 170239d35262SVincent Le Chenadec ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 170339d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local);CHKERRQ(ierr); 170439d35262SVincent Le Chenadec 170539d35262SVincent Le Chenadec garray += next->n; 170639d35262SVincent Le Chenadec larray += next->nlocal; 170739d35262SVincent Le Chenadec next = next->next; 170839d35262SVincent Le Chenadec } 170939d35262SVincent Le Chenadec 171039d35262SVincent Le Chenadec ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 171139d35262SVincent Le Chenadec ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 171239d35262SVincent Le Chenadec 171339d35262SVincent Le Chenadec PetscFunctionReturn(0); 171439d35262SVincent Le Chenadec } 171539d35262SVincent Le Chenadec 171639d35262SVincent Le Chenadec PetscErrorCode DMLocalToGlobalEnd_Composite(DM dm,Vec lvec,InsertMode mode,Vec gvec) 171739d35262SVincent Le Chenadec { 171839d35262SVincent Le Chenadec PetscFunctionBegin; 171939d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 172039d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,2); 172139d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,4); 172239d35262SVincent Le Chenadec PetscFunctionReturn(0); 172339d35262SVincent Le Chenadec } 172439d35262SVincent Le Chenadec 172539d35262SVincent Le Chenadec PetscErrorCode DMLocalToLocalBegin_Composite(DM dm,Vec vec1,InsertMode mode,Vec vec2) 172639d35262SVincent Le Chenadec { 172739d35262SVincent Le Chenadec PetscErrorCode ierr; 172839d35262SVincent Le Chenadec struct DMCompositeLink *next; 172939d35262SVincent Le Chenadec PetscScalar *array1,*array2; 173039d35262SVincent Le Chenadec DM_Composite *com = (DM_Composite*)dm->data; 173139d35262SVincent Le Chenadec 173239d35262SVincent Le Chenadec PetscFunctionBegin; 173339d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 173439d35262SVincent Le Chenadec PetscValidHeaderSpecific(vec1,VEC_CLASSID,2); 173539d35262SVincent Le Chenadec PetscValidHeaderSpecific(vec2,VEC_CLASSID,4); 173639d35262SVincent Le Chenadec 173739d35262SVincent Le Chenadec if (!com->setup) { 173839d35262SVincent Le Chenadec ierr = DMSetUp(dm);CHKERRQ(ierr); 173939d35262SVincent Le Chenadec } 174039d35262SVincent Le Chenadec 174139d35262SVincent Le Chenadec ierr = VecGetArray(vec1,&array1);CHKERRQ(ierr); 174239d35262SVincent Le Chenadec ierr = VecGetArray(vec2,&array2);CHKERRQ(ierr); 174339d35262SVincent Le Chenadec 174439d35262SVincent Le Chenadec /* loop over packed objects, handling one at at time */ 174539d35262SVincent Le Chenadec next = com->next; 174639d35262SVincent Le Chenadec while (next) { 174739d35262SVincent Le Chenadec Vec local1,local2; 174839d35262SVincent Le Chenadec 174939d35262SVincent Le Chenadec ierr = DMGetLocalVector(next->dm,&local1);CHKERRQ(ierr); 175039d35262SVincent Le Chenadec ierr = VecPlaceArray(local1,array1);CHKERRQ(ierr); 175139d35262SVincent Le Chenadec ierr = DMGetLocalVector(next->dm,&local2);CHKERRQ(ierr); 175239d35262SVincent Le Chenadec ierr = VecPlaceArray(local2,array2);CHKERRQ(ierr); 175339d35262SVincent Le Chenadec ierr = DMLocalToLocalBegin(next->dm,local1,mode,local2);CHKERRQ(ierr); 175439d35262SVincent Le Chenadec ierr = DMLocalToLocalEnd(next->dm,local1,mode,local2);CHKERRQ(ierr); 175539d35262SVincent Le Chenadec ierr = VecResetArray(local2);CHKERRQ(ierr); 175639d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local2);CHKERRQ(ierr); 175739d35262SVincent Le Chenadec ierr = VecResetArray(local1);CHKERRQ(ierr); 175839d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local1);CHKERRQ(ierr); 175939d35262SVincent Le Chenadec 176039d35262SVincent Le Chenadec array1 += next->nlocal; 176139d35262SVincent Le Chenadec array2 += next->nlocal; 176239d35262SVincent Le Chenadec next = next->next; 176339d35262SVincent Le Chenadec } 176439d35262SVincent Le Chenadec 176539d35262SVincent Le Chenadec ierr = VecRestoreArray(vec1,NULL);CHKERRQ(ierr); 176639d35262SVincent Le Chenadec ierr = VecRestoreArray(vec2,NULL);CHKERRQ(ierr); 176739d35262SVincent Le Chenadec 176839d35262SVincent Le Chenadec PetscFunctionReturn(0); 176939d35262SVincent Le Chenadec } 177039d35262SVincent Le Chenadec 177139d35262SVincent Le Chenadec PetscErrorCode DMLocalToLocalEnd_Composite(DM dm,Vec lvec,InsertMode mode,Vec gvec) 177239d35262SVincent Le Chenadec { 177339d35262SVincent Le Chenadec PetscFunctionBegin; 177439d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 177539d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,2); 177639d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,4); 17770c010503SBarry Smith PetscFunctionReturn(0); 17780c010503SBarry Smith } 177947c6ae99SBarry Smith 17806ae3a549SBarry Smith /*MC 17816ae3a549SBarry Smith DMCOMPOSITE = "composite" - A DM object that is used to manage data for a collection of DMs 17826ae3a549SBarry Smith 17836ae3a549SBarry Smith Level: intermediate 17846ae3a549SBarry Smith 17851abcec8cSBarry Smith .seealso: DMType, DM, DMDACreate(), DMCreate(), DMSetType(), DMCompositeCreate() 17866ae3a549SBarry Smith M*/ 17876ae3a549SBarry Smith 17886ae3a549SBarry Smith 17898cc058d9SJed Brown PETSC_EXTERN PetscErrorCode DMCreate_Composite(DM p) 1790a4121054SBarry Smith { 1791a4121054SBarry Smith PetscErrorCode ierr; 1792a4121054SBarry Smith DM_Composite *com; 1793a4121054SBarry Smith 1794a4121054SBarry Smith PetscFunctionBegin; 1795b00a9115SJed Brown ierr = PetscNewLog(p,&com);CHKERRQ(ierr); 1796a4121054SBarry Smith p->data = com; 1797a4121054SBarry Smith com->n = 0; 17987ac2b803SAlex Fikl com->nghost = 0; 17990298fd71SBarry Smith com->next = NULL; 1800a4121054SBarry Smith com->nDM = 0; 1801a4121054SBarry Smith 1802a4121054SBarry Smith p->ops->createglobalvector = DMCreateGlobalVector_Composite; 1803a4121054SBarry Smith p->ops->createlocalvector = DMCreateLocalVector_Composite; 1804184d77edSJed Brown p->ops->getlocaltoglobalmapping = DMGetLocalToGlobalMapping_Composite; 18054d343eeaSMatthew G Knepley p->ops->createfieldis = DMCreateFieldIS_Composite; 180616621825SDmitry Karpeev p->ops->createfielddecomposition = DMCreateFieldDecomposition_Composite; 1807a4121054SBarry Smith p->ops->refine = DMRefine_Composite; 180814354c39SJed Brown p->ops->coarsen = DMCoarsen_Composite; 180925296bd5SBarry Smith p->ops->createinterpolation = DMCreateInterpolation_Composite; 181025296bd5SBarry Smith p->ops->creatematrix = DMCreateMatrix_Composite; 1811e727c939SJed Brown p->ops->getcoloring = DMCreateColoring_Composite; 1812a4121054SBarry Smith p->ops->globaltolocalbegin = DMGlobalToLocalBegin_Composite; 1813a4121054SBarry Smith p->ops->globaltolocalend = DMGlobalToLocalEnd_Composite; 181439d35262SVincent Le Chenadec p->ops->localtoglobalbegin = DMLocalToGlobalBegin_Composite; 181539d35262SVincent Le Chenadec p->ops->localtoglobalend = DMLocalToGlobalEnd_Composite; 181639d35262SVincent Le Chenadec p->ops->localtolocalbegin = DMLocalToLocalBegin_Composite; 181739d35262SVincent Le Chenadec p->ops->localtolocalend = DMLocalToLocalEnd_Composite; 1818a4121054SBarry Smith p->ops->destroy = DMDestroy_Composite; 1819a4121054SBarry Smith p->ops->view = DMView_Composite; 1820a4121054SBarry Smith p->ops->setup = DMSetUp_Composite; 1821e10fd815SStefano Zampini 1822e10fd815SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)p,"DMSetUpGLVisViewer_C",DMSetUpGLVisViewer_Composite);CHKERRQ(ierr); 1823a4121054SBarry Smith PetscFunctionReturn(0); 1824a4121054SBarry Smith } 1825a4121054SBarry Smith 18261fd49c25SBarry Smith /*@ 18270c010503SBarry Smith DMCompositeCreate - Creates a vector packer, used to generate "composite" 18280c010503SBarry Smith vectors made up of several subvectors. 18290c010503SBarry Smith 1830d083f849SBarry Smith Collective 183147c6ae99SBarry Smith 183247c6ae99SBarry Smith Input Parameter: 18330c010503SBarry Smith . comm - the processors that will share the global vector 18340c010503SBarry Smith 18350c010503SBarry Smith Output Parameters: 18360c010503SBarry Smith . packer - the packer object 183747c6ae99SBarry Smith 183847c6ae99SBarry Smith Level: advanced 183947c6ae99SBarry Smith 18401abcec8cSBarry Smith .seealso DMDestroy(), DMCompositeAddDM(), DMCompositeScatter(), DMCOMPOSITE,DMCreate() 18416eb61c8cSJed Brown DMCompositeGather(), DMCreateGlobalVector(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess() 184247c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 184347c6ae99SBarry Smith 184447c6ae99SBarry Smith @*/ 18457087cfbeSBarry Smith PetscErrorCode DMCompositeCreate(MPI_Comm comm,DM *packer) 184647c6ae99SBarry Smith { 18470c010503SBarry Smith PetscErrorCode ierr; 18480c010503SBarry Smith 184947c6ae99SBarry Smith PetscFunctionBegin; 18500c010503SBarry Smith PetscValidPointer(packer,2); 1851a4121054SBarry Smith ierr = DMCreate(comm,packer);CHKERRQ(ierr); 1852a4121054SBarry Smith ierr = DMSetType(*packer,DMCOMPOSITE);CHKERRQ(ierr); 185347c6ae99SBarry Smith PetscFunctionReturn(0); 185447c6ae99SBarry Smith } 1855