147c6ae99SBarry Smith #define PETSCDM_DLL 247c6ae99SBarry Smith 347c6ae99SBarry Smith #include "private/daimpl.h" /*I "petscda.h" I*/ 447c6ae99SBarry Smith 547c6ae99SBarry Smith #undef __FUNCT__ 647c6ae99SBarry Smith #define __FUNCT__ "DAView_2d" 747c6ae99SBarry Smith PetscErrorCode DAView_2d(DA da,PetscViewer viewer) 847c6ae99SBarry Smith { 947c6ae99SBarry Smith PetscErrorCode ierr; 1047c6ae99SBarry Smith PetscMPIInt rank; 1147c6ae99SBarry Smith PetscBool iascii,isdraw; 1247c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 1347c6ae99SBarry Smith 1447c6ae99SBarry Smith PetscFunctionBegin; 1547c6ae99SBarry Smith ierr = MPI_Comm_rank(((PetscObject)da)->comm,&rank);CHKERRQ(ierr); 1647c6ae99SBarry Smith 1747c6ae99SBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1847c6ae99SBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1947c6ae99SBarry Smith if (iascii) { 2047c6ae99SBarry Smith PetscViewerFormat format; 2147c6ae99SBarry Smith 2247c6ae99SBarry Smith ierr = PetscViewerGetFormat(viewer, &format);CHKERRQ(ierr); 2347c6ae99SBarry Smith if (format != PETSC_VIEWER_ASCII_VTK && format != PETSC_VIEWER_ASCII_VTK_CELL) { 2447c6ae99SBarry Smith DALocalInfo info; 2547c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 2647c6ae99SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Processor [%d] M %D N %D m %D n %D w %D s %D\n",rank,dd->M,dd->N,dd->m,dd->n,dd->w,dd->s);CHKERRQ(ierr); 2747c6ae99SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"X range of indices: %D %D, Y range of indices: %D %D\n",info.xs,info.xs+info.xm,info.ys,info.ys+info.ym);CHKERRQ(ierr); 2847c6ae99SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 2947c6ae99SBarry Smith } 3047c6ae99SBarry Smith } else if (isdraw) { 3147c6ae99SBarry Smith PetscDraw draw; 3247c6ae99SBarry Smith double ymin = -1*dd->s-1,ymax = dd->N+dd->s; 3347c6ae99SBarry Smith double xmin = -1*dd->s-1,xmax = dd->M+dd->s; 3447c6ae99SBarry Smith double x,y; 3547c6ae99SBarry Smith PetscInt base,*idx; 3647c6ae99SBarry Smith char node[10]; 3747c6ae99SBarry Smith PetscBool isnull; 3847c6ae99SBarry Smith 3947c6ae99SBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 4047c6ae99SBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 4147c6ae99SBarry Smith if (!dd->coordinates) { 4247c6ae99SBarry Smith ierr = PetscDrawSetCoordinates(draw,xmin,ymin,xmax,ymax);CHKERRQ(ierr); 4347c6ae99SBarry Smith } 4447c6ae99SBarry Smith ierr = PetscDrawSynchronizedClear(draw);CHKERRQ(ierr); 4547c6ae99SBarry Smith 4647c6ae99SBarry Smith /* first processor draw all node lines */ 4747c6ae99SBarry Smith if (!rank) { 4847c6ae99SBarry Smith ymin = 0.0; ymax = dd->N - 1; 4947c6ae99SBarry Smith for (xmin=0; xmin<dd->M; xmin++) { 5047c6ae99SBarry Smith ierr = PetscDrawLine(draw,xmin,ymin,xmin,ymax,PETSC_DRAW_BLACK);CHKERRQ(ierr); 5147c6ae99SBarry Smith } 5247c6ae99SBarry Smith xmin = 0.0; xmax = dd->M - 1; 5347c6ae99SBarry Smith for (ymin=0; ymin<dd->N; ymin++) { 5447c6ae99SBarry Smith ierr = PetscDrawLine(draw,xmin,ymin,xmax,ymin,PETSC_DRAW_BLACK);CHKERRQ(ierr); 5547c6ae99SBarry Smith } 5647c6ae99SBarry Smith } 5747c6ae99SBarry Smith ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr); 5847c6ae99SBarry Smith ierr = PetscDrawPause(draw);CHKERRQ(ierr); 5947c6ae99SBarry Smith 6047c6ae99SBarry Smith /* draw my box */ 6147c6ae99SBarry Smith ymin = dd->ys; ymax = dd->ye - 1; xmin = dd->xs/dd->w; 6247c6ae99SBarry Smith xmax =(dd->xe-1)/dd->w; 6347c6ae99SBarry Smith ierr = PetscDrawLine(draw,xmin,ymin,xmax,ymin,PETSC_DRAW_RED);CHKERRQ(ierr); 6447c6ae99SBarry Smith ierr = PetscDrawLine(draw,xmin,ymin,xmin,ymax,PETSC_DRAW_RED);CHKERRQ(ierr); 6547c6ae99SBarry Smith ierr = PetscDrawLine(draw,xmin,ymax,xmax,ymax,PETSC_DRAW_RED);CHKERRQ(ierr); 6647c6ae99SBarry Smith ierr = PetscDrawLine(draw,xmax,ymin,xmax,ymax,PETSC_DRAW_RED);CHKERRQ(ierr); 6747c6ae99SBarry Smith 6847c6ae99SBarry Smith /* put in numbers */ 6947c6ae99SBarry Smith base = (dd->base)/dd->w; 7047c6ae99SBarry Smith for (y=ymin; y<=ymax; y++) { 7147c6ae99SBarry Smith for (x=xmin; x<=xmax; x++) { 7247c6ae99SBarry Smith sprintf(node,"%d",(int)base++); 7347c6ae99SBarry Smith ierr = PetscDrawString(draw,x,y,PETSC_DRAW_BLACK,node);CHKERRQ(ierr); 7447c6ae99SBarry Smith } 7547c6ae99SBarry Smith } 7647c6ae99SBarry Smith 7747c6ae99SBarry Smith ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr); 7847c6ae99SBarry Smith ierr = PetscDrawPause(draw);CHKERRQ(ierr); 7947c6ae99SBarry Smith /* overlay ghost numbers, useful for error checking */ 8047c6ae99SBarry Smith /* put in numbers */ 8147c6ae99SBarry Smith 8247c6ae99SBarry Smith base = 0; idx = dd->idx; 8347c6ae99SBarry Smith ymin = dd->Ys; ymax = dd->Ye; xmin = dd->Xs; xmax = dd->Xe; 8447c6ae99SBarry Smith for (y=ymin; y<ymax; y++) { 8547c6ae99SBarry Smith for (x=xmin; x<xmax; x++) { 8647c6ae99SBarry Smith if ((base % dd->w) == 0) { 8747c6ae99SBarry Smith sprintf(node,"%d",(int)(idx[base]/dd->w)); 8847c6ae99SBarry Smith ierr = PetscDrawString(draw,x/dd->w,y,PETSC_DRAW_BLUE,node);CHKERRQ(ierr); 8947c6ae99SBarry Smith } 9047c6ae99SBarry Smith base++; 9147c6ae99SBarry Smith } 9247c6ae99SBarry Smith } 9347c6ae99SBarry Smith ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr); 9447c6ae99SBarry Smith ierr = PetscDrawPause(draw);CHKERRQ(ierr); 9547c6ae99SBarry Smith } else { 9647c6ae99SBarry Smith SETERRQ1(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Viewer type %s not supported for DA2d",((PetscObject)viewer)->type_name); 9747c6ae99SBarry Smith } 9847c6ae99SBarry Smith PetscFunctionReturn(0); 9947c6ae99SBarry Smith } 10047c6ae99SBarry Smith 10147c6ae99SBarry Smith /* 10247c6ae99SBarry Smith M is number of grid points 10347c6ae99SBarry Smith m is number of processors 10447c6ae99SBarry Smith 10547c6ae99SBarry Smith */ 10647c6ae99SBarry Smith #undef __FUNCT__ 10747c6ae99SBarry Smith #define __FUNCT__ "DASplitComm2d" 10847c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DASplitComm2d(MPI_Comm comm,PetscInt M,PetscInt N,PetscInt sw,MPI_Comm *outcomm) 10947c6ae99SBarry Smith { 11047c6ae99SBarry Smith PetscErrorCode ierr; 11147c6ae99SBarry Smith PetscInt m,n = 0,x = 0,y = 0; 11247c6ae99SBarry Smith PetscMPIInt size,csize,rank; 11347c6ae99SBarry Smith 11447c6ae99SBarry Smith PetscFunctionBegin; 11547c6ae99SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 11647c6ae99SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 11747c6ae99SBarry Smith 11847c6ae99SBarry Smith csize = 4*size; 11947c6ae99SBarry Smith do { 12047c6ae99SBarry Smith if (csize % 4) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Cannot split communicator of size %d tried %d %D %D",size,csize,x,y); 12147c6ae99SBarry Smith csize = csize/4; 12247c6ae99SBarry Smith 12347c6ae99SBarry Smith m = (PetscInt)(0.5 + sqrt(((double)M)*((double)csize)/((double)N))); 12447c6ae99SBarry Smith if (!m) m = 1; 12547c6ae99SBarry Smith while (m > 0) { 12647c6ae99SBarry Smith n = csize/m; 12747c6ae99SBarry Smith if (m*n == csize) break; 12847c6ae99SBarry Smith m--; 12947c6ae99SBarry Smith } 13047c6ae99SBarry Smith if (M > N && m < n) {PetscInt _m = m; m = n; n = _m;} 13147c6ae99SBarry Smith 13247c6ae99SBarry Smith x = M/m + ((M % m) > ((csize-1) % m)); 13347c6ae99SBarry Smith y = (N + (csize-1)/m)/n; 13447c6ae99SBarry Smith } while ((x < 4 || y < 4) && csize > 1); 13547c6ae99SBarry Smith if (size != csize) { 13647c6ae99SBarry Smith MPI_Group entire_group,sub_group; 13747c6ae99SBarry Smith PetscMPIInt i,*groupies; 13847c6ae99SBarry Smith 13947c6ae99SBarry Smith ierr = MPI_Comm_group(comm,&entire_group);CHKERRQ(ierr); 14047c6ae99SBarry Smith ierr = PetscMalloc(csize*sizeof(PetscInt),&groupies);CHKERRQ(ierr); 14147c6ae99SBarry Smith for (i=0; i<csize; i++) { 14247c6ae99SBarry Smith groupies[i] = (rank/csize)*csize + i; 14347c6ae99SBarry Smith } 14447c6ae99SBarry Smith ierr = MPI_Group_incl(entire_group,csize,groupies,&sub_group);CHKERRQ(ierr); 14547c6ae99SBarry Smith ierr = PetscFree(groupies);CHKERRQ(ierr); 14647c6ae99SBarry Smith ierr = MPI_Comm_create(comm,sub_group,outcomm);CHKERRQ(ierr); 14747c6ae99SBarry Smith ierr = MPI_Group_free(&entire_group);CHKERRQ(ierr); 14847c6ae99SBarry Smith ierr = MPI_Group_free(&sub_group);CHKERRQ(ierr); 14947c6ae99SBarry Smith ierr = PetscInfo1(0,"DASplitComm2d:Creating redundant coarse problems of size %d\n",csize);CHKERRQ(ierr); 15047c6ae99SBarry Smith } else { 15147c6ae99SBarry Smith *outcomm = comm; 15247c6ae99SBarry Smith } 15347c6ae99SBarry Smith PetscFunctionReturn(0); 15447c6ae99SBarry Smith } 15547c6ae99SBarry Smith 15647c6ae99SBarry Smith #undef __FUNCT__ 157*5dff015aSBarry Smith #define __FUNCT__ "DMGetElements_DA_2d_P1" 158*5dff015aSBarry Smith PetscErrorCode DMGetElements_DA_2d_P1(DA da,PetscInt *n,const PetscInt *e[]) 15947c6ae99SBarry Smith { 16047c6ae99SBarry Smith PetscErrorCode ierr; 16147c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 16247c6ae99SBarry Smith PetscInt i,j,cnt,xs,xe = dd->xe,ys,ye = dd->ye,Xs = dd->Xs, Xe = dd->Xe, Ys = dd->Ys; 16347c6ae99SBarry Smith 16447c6ae99SBarry Smith PetscFunctionBegin; 16547c6ae99SBarry Smith if (!dd->e) { 16647c6ae99SBarry Smith if (dd->xs == Xs) xs = dd->xs; else xs = dd->xs - 1; 16747c6ae99SBarry Smith if (dd->ys == Ys) ys = dd->ys; else ys = dd->ys - 1; 16847c6ae99SBarry Smith dd->ne = 2*(xe - xs - 1)*(ye - ys - 1); 16947c6ae99SBarry Smith ierr = PetscMalloc((1 + 3*dd->ne)*sizeof(PetscInt),&dd->e);CHKERRQ(ierr); 17047c6ae99SBarry Smith cnt = 0; 17147c6ae99SBarry Smith for (j=ys; j<ye-1; j++) { 17247c6ae99SBarry Smith for (i=xs; i<xe-1; i++) { 17347c6ae99SBarry Smith dd->e[cnt] = i - Xs + (j - Ys)*(Xe - Xs); 17447c6ae99SBarry Smith dd->e[cnt+1] = i - Xs + 1 + (j - Ys)*(Xe - Xs); 17547c6ae99SBarry Smith dd->e[cnt+2] = i - Xs + (j - Ys + 1)*(Xe - Xs); 17647c6ae99SBarry Smith 17747c6ae99SBarry Smith dd->e[cnt+3] = i - Xs + 1 + (j - Ys + 1)*(Xe - Xs); 17847c6ae99SBarry Smith dd->e[cnt+4] = i - Xs + (j - Ys + 1)*(Xe - Xs); 17947c6ae99SBarry Smith dd->e[cnt+5] = i - Xs + 1 + (j - Ys)*(Xe - Xs); 18047c6ae99SBarry Smith cnt += 6; 18147c6ae99SBarry Smith } 18247c6ae99SBarry Smith } 18347c6ae99SBarry Smith } 18447c6ae99SBarry Smith *n = dd->ne; 18547c6ae99SBarry Smith *e = dd->e; 18647c6ae99SBarry Smith PetscFunctionReturn(0); 18747c6ae99SBarry Smith } 18847c6ae99SBarry Smith 18947c6ae99SBarry Smith #undef __FUNCT__ 19047c6ae99SBarry Smith #define __FUNCT__ "DASetLocalFunction" 19147c6ae99SBarry Smith /*@C 19247c6ae99SBarry Smith DASetLocalFunction - Caches in a DA a local function. 19347c6ae99SBarry Smith 19447c6ae99SBarry Smith Logically Collective on DA 19547c6ae99SBarry Smith 19647c6ae99SBarry Smith Input Parameter: 19747c6ae99SBarry Smith + da - initial distributed array 19847c6ae99SBarry Smith - lf - the local function 19947c6ae99SBarry Smith 20047c6ae99SBarry Smith Level: intermediate 20147c6ae99SBarry Smith 20247c6ae99SBarry Smith Notes: The routine SNESDAFormFunction() uses this the cached function to evaluate the user provided function. 20347c6ae99SBarry Smith 20447c6ae99SBarry Smith .keywords: distributed array, refine 20547c6ae99SBarry Smith 20647c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunctioni() 20747c6ae99SBarry Smith @*/ 20847c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DASetLocalFunction(DA da,DALocalFunction1 lf) 20947c6ae99SBarry Smith { 21047c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 21147c6ae99SBarry Smith PetscFunctionBegin; 21247c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 21347c6ae99SBarry Smith dd->lf = lf; 21447c6ae99SBarry Smith PetscFunctionReturn(0); 21547c6ae99SBarry Smith } 21647c6ae99SBarry Smith 21747c6ae99SBarry Smith #undef __FUNCT__ 21847c6ae99SBarry Smith #define __FUNCT__ "DASetLocalFunctioni" 21947c6ae99SBarry Smith /*@C 22047c6ae99SBarry Smith DASetLocalFunctioni - Caches in a DA a local function that evaluates a single component 22147c6ae99SBarry Smith 22247c6ae99SBarry Smith Logically Collective on DA 22347c6ae99SBarry Smith 22447c6ae99SBarry Smith Input Parameter: 22547c6ae99SBarry Smith + da - initial distributed array 22647c6ae99SBarry Smith - lfi - the local function 22747c6ae99SBarry Smith 22847c6ae99SBarry Smith Level: intermediate 22947c6ae99SBarry Smith 23047c6ae99SBarry Smith .keywords: distributed array, refine 23147c6ae99SBarry Smith 23247c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction() 23347c6ae99SBarry Smith @*/ 23447c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DASetLocalFunctioni(DA da,PetscErrorCode (*lfi)(DALocalInfo*,MatStencil*,void*,PetscScalar*,void*)) 23547c6ae99SBarry Smith { 23647c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 23747c6ae99SBarry Smith PetscFunctionBegin; 23847c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 23947c6ae99SBarry Smith dd->lfi = lfi; 24047c6ae99SBarry Smith PetscFunctionReturn(0); 24147c6ae99SBarry Smith } 24247c6ae99SBarry Smith 24347c6ae99SBarry Smith #undef __FUNCT__ 24447c6ae99SBarry Smith #define __FUNCT__ "DASetLocalFunctionib" 24547c6ae99SBarry Smith /*@C 24647c6ae99SBarry Smith DASetLocalFunctionib - Caches in a DA a block local function that evaluates a single component 24747c6ae99SBarry Smith 24847c6ae99SBarry Smith Logically Collective on DA 24947c6ae99SBarry Smith 25047c6ae99SBarry Smith Input Parameter: 25147c6ae99SBarry Smith + da - initial distributed array 25247c6ae99SBarry Smith - lfi - the local function 25347c6ae99SBarry Smith 25447c6ae99SBarry Smith Level: intermediate 25547c6ae99SBarry Smith 25647c6ae99SBarry Smith .keywords: distributed array, refine 25747c6ae99SBarry Smith 25847c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction() 25947c6ae99SBarry Smith @*/ 26047c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DASetLocalFunctionib(DA da,PetscErrorCode (*lfi)(DALocalInfo*,MatStencil*,void*,PetscScalar*,void*)) 26147c6ae99SBarry Smith { 26247c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 26347c6ae99SBarry Smith PetscFunctionBegin; 26447c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 26547c6ae99SBarry Smith dd->lfib = lfi; 26647c6ae99SBarry Smith PetscFunctionReturn(0); 26747c6ae99SBarry Smith } 26847c6ae99SBarry Smith 26947c6ae99SBarry Smith #undef __FUNCT__ 27047c6ae99SBarry Smith #define __FUNCT__ "DASetLocalAdicFunction_Private" 27147c6ae99SBarry Smith PetscErrorCode DASetLocalAdicFunction_Private(DA da,DALocalFunction1 ad_lf) 27247c6ae99SBarry Smith { 27347c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 27447c6ae99SBarry Smith PetscFunctionBegin; 27547c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 27647c6ae99SBarry Smith dd->adic_lf = ad_lf; 27747c6ae99SBarry Smith PetscFunctionReturn(0); 27847c6ae99SBarry Smith } 27947c6ae99SBarry Smith 28047c6ae99SBarry Smith /*MC 28147c6ae99SBarry Smith DASetLocalAdicFunctioni - Caches in a DA a local functioni computed by ADIC/ADIFOR 28247c6ae99SBarry Smith 28347c6ae99SBarry Smith Synopsis: 28447c6ae99SBarry Smith PetscErrorCode DASetLocalAdicFunctioni(DA da,PetscInt (ad_lf*)(DALocalInfo*,MatStencil*,void*,void*,void*) 28547c6ae99SBarry Smith 28647c6ae99SBarry Smith Logically Collective on DA 28747c6ae99SBarry Smith 28847c6ae99SBarry Smith Input Parameter: 28947c6ae99SBarry Smith + da - initial distributed array 29047c6ae99SBarry Smith - ad_lfi - the local function as computed by ADIC/ADIFOR 29147c6ae99SBarry Smith 29247c6ae99SBarry Smith Level: intermediate 29347c6ae99SBarry Smith 29447c6ae99SBarry Smith .keywords: distributed array, refine 29547c6ae99SBarry Smith 29647c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction(), 29747c6ae99SBarry Smith DASetLocalJacobian(), DASetLocalFunctioni() 29847c6ae99SBarry Smith M*/ 29947c6ae99SBarry Smith 30047c6ae99SBarry Smith #undef __FUNCT__ 30147c6ae99SBarry Smith #define __FUNCT__ "DASetLocalAdicFunctioni_Private" 30247c6ae99SBarry Smith PetscErrorCode DASetLocalAdicFunctioni_Private(DA da,PetscErrorCode (*ad_lfi)(DALocalInfo*,MatStencil*,void*,void*,void*)) 30347c6ae99SBarry Smith { 30447c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 30547c6ae99SBarry Smith PetscFunctionBegin; 30647c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 30747c6ae99SBarry Smith dd->adic_lfi = ad_lfi; 30847c6ae99SBarry Smith PetscFunctionReturn(0); 30947c6ae99SBarry Smith } 31047c6ae99SBarry Smith 31147c6ae99SBarry Smith /*MC 31247c6ae99SBarry Smith DASetLocalAdicMFFunctioni - Caches in a DA a local functioni computed by ADIC/ADIFOR 31347c6ae99SBarry Smith 31447c6ae99SBarry Smith Synopsis: 31547c6ae99SBarry Smith PetscErrorCode DASetLocalAdicFunctioni(DA da,int (ad_lf*)(DALocalInfo*,MatStencil*,void*,void*,void*) 31647c6ae99SBarry Smith 31747c6ae99SBarry Smith Logically Collective on DA 31847c6ae99SBarry Smith 31947c6ae99SBarry Smith Input Parameter: 32047c6ae99SBarry Smith + da - initial distributed array 32147c6ae99SBarry Smith - admf_lfi - the local matrix-free function as computed by ADIC/ADIFOR 32247c6ae99SBarry Smith 32347c6ae99SBarry Smith Level: intermediate 32447c6ae99SBarry Smith 32547c6ae99SBarry Smith .keywords: distributed array, refine 32647c6ae99SBarry Smith 32747c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction(), 32847c6ae99SBarry Smith DASetLocalJacobian(), DASetLocalFunctioni() 32947c6ae99SBarry Smith M*/ 33047c6ae99SBarry Smith 33147c6ae99SBarry Smith #undef __FUNCT__ 33247c6ae99SBarry Smith #define __FUNCT__ "DASetLocalAdicMFFunctioni_Private" 33347c6ae99SBarry Smith PetscErrorCode DASetLocalAdicMFFunctioni_Private(DA da,PetscErrorCode (*admf_lfi)(DALocalInfo*,MatStencil*,void*,void*,void*)) 33447c6ae99SBarry Smith { 33547c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 33647c6ae99SBarry Smith PetscFunctionBegin; 33747c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 33847c6ae99SBarry Smith dd->adicmf_lfi = admf_lfi; 33947c6ae99SBarry Smith PetscFunctionReturn(0); 34047c6ae99SBarry Smith } 34147c6ae99SBarry Smith 34247c6ae99SBarry Smith /*MC 34347c6ae99SBarry Smith DASetLocalAdicFunctionib - Caches in a DA a block local functioni computed by ADIC/ADIFOR 34447c6ae99SBarry Smith 34547c6ae99SBarry Smith Synopsis: 34647c6ae99SBarry Smith PetscErrorCode DASetLocalAdicFunctionib(DA da,PetscInt (ad_lf*)(DALocalInfo*,MatStencil*,void*,void*,void*) 34747c6ae99SBarry Smith 34847c6ae99SBarry Smith Logically Collective on DA 34947c6ae99SBarry Smith 35047c6ae99SBarry Smith Input Parameter: 35147c6ae99SBarry Smith + da - initial distributed array 35247c6ae99SBarry Smith - ad_lfi - the local function as computed by ADIC/ADIFOR 35347c6ae99SBarry Smith 35447c6ae99SBarry Smith Level: intermediate 35547c6ae99SBarry Smith 35647c6ae99SBarry Smith .keywords: distributed array, refine 35747c6ae99SBarry Smith 35847c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction(), 35947c6ae99SBarry Smith DASetLocalJacobian(), DASetLocalFunctionib() 36047c6ae99SBarry Smith M*/ 36147c6ae99SBarry Smith 36247c6ae99SBarry Smith #undef __FUNCT__ 36347c6ae99SBarry Smith #define __FUNCT__ "DASetLocalAdicFunctionib_Private" 36447c6ae99SBarry Smith PetscErrorCode DASetLocalAdicFunctionib_Private(DA da,PetscErrorCode (*ad_lfi)(DALocalInfo*,MatStencil*,void*,void*,void*)) 36547c6ae99SBarry Smith { 36647c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 36747c6ae99SBarry Smith PetscFunctionBegin; 36847c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 36947c6ae99SBarry Smith dd->adic_lfib = ad_lfi; 37047c6ae99SBarry Smith PetscFunctionReturn(0); 37147c6ae99SBarry Smith } 37247c6ae99SBarry Smith 37347c6ae99SBarry Smith /*MC 37447c6ae99SBarry Smith DASetLocalAdicMFFunctionib - Caches in a DA a block local functioni computed by ADIC/ADIFOR 37547c6ae99SBarry Smith 37647c6ae99SBarry Smith Synopsis: 37747c6ae99SBarry Smith PetscErrorCode DASetLocalAdicFunctionib(DA da,int (ad_lf*)(DALocalInfo*,MatStencil*,void*,void*,void*) 37847c6ae99SBarry Smith 37947c6ae99SBarry Smith Logically Collective on DA 38047c6ae99SBarry Smith 38147c6ae99SBarry Smith Input Parameter: 38247c6ae99SBarry Smith + da - initial distributed array 38347c6ae99SBarry Smith - admf_lfi - the local matrix-free function as computed by ADIC/ADIFOR 38447c6ae99SBarry Smith 38547c6ae99SBarry Smith Level: intermediate 38647c6ae99SBarry Smith 38747c6ae99SBarry Smith .keywords: distributed array, refine 38847c6ae99SBarry Smith 38947c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction(), 39047c6ae99SBarry Smith DASetLocalJacobian(), DASetLocalFunctionib() 39147c6ae99SBarry Smith M*/ 39247c6ae99SBarry Smith 39347c6ae99SBarry Smith #undef __FUNCT__ 39447c6ae99SBarry Smith #define __FUNCT__ "DASetLocalAdicMFFunctionib_Private" 39547c6ae99SBarry Smith PetscErrorCode DASetLocalAdicMFFunctionib_Private(DA da,PetscErrorCode (*admf_lfi)(DALocalInfo*,MatStencil*,void*,void*,void*)) 39647c6ae99SBarry Smith { 39747c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 39847c6ae99SBarry Smith PetscFunctionBegin; 39947c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 40047c6ae99SBarry Smith dd->adicmf_lfib = admf_lfi; 40147c6ae99SBarry Smith PetscFunctionReturn(0); 40247c6ae99SBarry Smith } 40347c6ae99SBarry Smith 40447c6ae99SBarry Smith /*MC 40547c6ae99SBarry Smith DASetLocalAdicMFFunction - Caches in a DA a local function computed by ADIC/ADIFOR 40647c6ae99SBarry Smith 40747c6ae99SBarry Smith Synopsis: 40847c6ae99SBarry Smith PetscErrorCode DASetLocalAdicMFFunction(DA da,DALocalFunction1 ad_lf) 40947c6ae99SBarry Smith 41047c6ae99SBarry Smith Logically Collective on DA 41147c6ae99SBarry Smith 41247c6ae99SBarry Smith Input Parameter: 41347c6ae99SBarry Smith + da - initial distributed array 41447c6ae99SBarry Smith - ad_lf - the local function as computed by ADIC/ADIFOR 41547c6ae99SBarry Smith 41647c6ae99SBarry Smith Level: intermediate 41747c6ae99SBarry Smith 41847c6ae99SBarry Smith .keywords: distributed array, refine 41947c6ae99SBarry Smith 42047c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction(), 42147c6ae99SBarry Smith DASetLocalJacobian() 42247c6ae99SBarry Smith M*/ 42347c6ae99SBarry Smith 42447c6ae99SBarry Smith #undef __FUNCT__ 42547c6ae99SBarry Smith #define __FUNCT__ "DASetLocalAdicMFFunction_Private" 42647c6ae99SBarry Smith PetscErrorCode DASetLocalAdicMFFunction_Private(DA da,DALocalFunction1 ad_lf) 42747c6ae99SBarry Smith { 42847c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 42947c6ae99SBarry Smith PetscFunctionBegin; 43047c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 43147c6ae99SBarry Smith dd->adicmf_lf = ad_lf; 43247c6ae99SBarry Smith PetscFunctionReturn(0); 43347c6ae99SBarry Smith } 43447c6ae99SBarry Smith 43547c6ae99SBarry Smith /*@C 43647c6ae99SBarry Smith DASetLocalJacobian - Caches in a DA a local Jacobian computation function 43747c6ae99SBarry Smith 43847c6ae99SBarry Smith Logically Collective on DA 43947c6ae99SBarry Smith 44047c6ae99SBarry Smith 44147c6ae99SBarry Smith Input Parameter: 44247c6ae99SBarry Smith + da - initial distributed array 44347c6ae99SBarry Smith - lj - the local Jacobian 44447c6ae99SBarry Smith 44547c6ae99SBarry Smith Level: intermediate 44647c6ae99SBarry Smith 44747c6ae99SBarry Smith Notes: The routine SNESDAFormFunction() uses this the cached function to evaluate the user provided function. 44847c6ae99SBarry Smith 44947c6ae99SBarry Smith .keywords: distributed array, refine 45047c6ae99SBarry Smith 45147c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalFunction() 45247c6ae99SBarry Smith @*/ 45347c6ae99SBarry Smith #undef __FUNCT__ 45447c6ae99SBarry Smith #define __FUNCT__ "DASetLocalJacobian" 45547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DASetLocalJacobian(DA da,DALocalFunction1 lj) 45647c6ae99SBarry Smith { 45747c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 45847c6ae99SBarry Smith PetscFunctionBegin; 45947c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 46047c6ae99SBarry Smith dd->lj = lj; 46147c6ae99SBarry Smith PetscFunctionReturn(0); 46247c6ae99SBarry Smith } 46347c6ae99SBarry Smith 46447c6ae99SBarry Smith #undef __FUNCT__ 46547c6ae99SBarry Smith #define __FUNCT__ "DAGetLocalFunction" 46647c6ae99SBarry Smith /*@C 46747c6ae99SBarry Smith DAGetLocalFunction - Gets from a DA a local function and its ADIC/ADIFOR Jacobian 46847c6ae99SBarry Smith 46947c6ae99SBarry Smith Note Collective 47047c6ae99SBarry Smith 47147c6ae99SBarry Smith Input Parameter: 47247c6ae99SBarry Smith . da - initial distributed array 47347c6ae99SBarry Smith 47447c6ae99SBarry Smith Output Parameter: 47547c6ae99SBarry Smith . lf - the local function 47647c6ae99SBarry Smith 47747c6ae99SBarry Smith Level: intermediate 47847c6ae99SBarry Smith 47947c6ae99SBarry Smith .keywords: distributed array, refine 48047c6ae99SBarry Smith 48147c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalJacobian(), DASetLocalFunction() 48247c6ae99SBarry Smith @*/ 48347c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAGetLocalFunction(DA da,DALocalFunction1 *lf) 48447c6ae99SBarry Smith { 48547c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 48647c6ae99SBarry Smith PetscFunctionBegin; 48747c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 48847c6ae99SBarry Smith if (lf) *lf = dd->lf; 48947c6ae99SBarry Smith PetscFunctionReturn(0); 49047c6ae99SBarry Smith } 49147c6ae99SBarry Smith 49247c6ae99SBarry Smith #undef __FUNCT__ 49347c6ae99SBarry Smith #define __FUNCT__ "DAGetLocalJacobian" 49447c6ae99SBarry Smith /*@C 49547c6ae99SBarry Smith DAGetLocalJacobian - Gets from a DA a local jacobian 49647c6ae99SBarry Smith 49747c6ae99SBarry Smith Not Collective 49847c6ae99SBarry Smith 49947c6ae99SBarry Smith Input Parameter: 50047c6ae99SBarry Smith . da - initial distributed array 50147c6ae99SBarry Smith 50247c6ae99SBarry Smith Output Parameter: 50347c6ae99SBarry Smith . lj - the local jacobian 50447c6ae99SBarry Smith 50547c6ae99SBarry Smith Level: intermediate 50647c6ae99SBarry Smith 50747c6ae99SBarry Smith .keywords: distributed array, refine 50847c6ae99SBarry Smith 50947c6ae99SBarry Smith .seealso: DACreate1d(), DACreate2d(), DACreate3d(), DADestroy(), DAGetLocalFunction(), DASetLocalJacobian() 51047c6ae99SBarry Smith @*/ 51147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAGetLocalJacobian(DA da,DALocalFunction1 *lj) 51247c6ae99SBarry Smith { 51347c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 51447c6ae99SBarry Smith PetscFunctionBegin; 51547c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 51647c6ae99SBarry Smith if (lj) *lj = dd->lj; 51747c6ae99SBarry Smith PetscFunctionReturn(0); 51847c6ae99SBarry Smith } 51947c6ae99SBarry Smith 52047c6ae99SBarry Smith #undef __FUNCT__ 52147c6ae99SBarry Smith #define __FUNCT__ "DAFormFunction" 52247c6ae99SBarry Smith /*@ 52347c6ae99SBarry Smith DAFormFunction - Evaluates a user provided function on each processor that 52447c6ae99SBarry Smith share a DA 52547c6ae99SBarry Smith 52647c6ae99SBarry Smith Input Parameters: 52747c6ae99SBarry Smith + da - the DA that defines the grid 52847c6ae99SBarry Smith . vu - input vector 52947c6ae99SBarry Smith . vfu - output vector 53047c6ae99SBarry Smith - w - any user data 53147c6ae99SBarry Smith 53247c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu upon entry 53347c6ae99SBarry Smith 53447c6ae99SBarry Smith This should eventually replace DAFormFunction1 53547c6ae99SBarry Smith 53647c6ae99SBarry Smith Level: advanced 53747c6ae99SBarry Smith 53847c6ae99SBarry Smith .seealso: DAComputeJacobian1WithAdic() 53947c6ae99SBarry Smith 54047c6ae99SBarry Smith @*/ 54147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormFunction(DA da,PetscErrorCode (*lf)(void),Vec vu,Vec vfu,void *w) 54247c6ae99SBarry Smith { 54347c6ae99SBarry Smith PetscErrorCode ierr; 54447c6ae99SBarry Smith void *u,*fu; 54547c6ae99SBarry Smith DALocalInfo info; 54647c6ae99SBarry Smith PetscErrorCode (*f)(DALocalInfo*,void*,void*,void*) = (PetscErrorCode (*)(DALocalInfo*,void*,void*,void*))lf; 54747c6ae99SBarry Smith 54847c6ae99SBarry Smith PetscFunctionBegin; 54947c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 55047c6ae99SBarry Smith ierr = DAVecGetArray(da,vu,&u);CHKERRQ(ierr); 55147c6ae99SBarry Smith ierr = DAVecGetArray(da,vfu,&fu);CHKERRQ(ierr); 55247c6ae99SBarry Smith 55347c6ae99SBarry Smith ierr = (*f)(&info,u,fu,w); 55447c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 55547c6ae99SBarry Smith PetscErrorCode pierr = DAVecRestoreArray(da,vu,&u);CHKERRQ(pierr); 55647c6ae99SBarry Smith pierr = DAVecRestoreArray(da,vfu,&fu);CHKERRQ(pierr); 55747c6ae99SBarry Smith } 55847c6ae99SBarry Smith CHKERRQ(ierr); 55947c6ae99SBarry Smith 56047c6ae99SBarry Smith ierr = DAVecRestoreArray(da,vu,&u);CHKERRQ(ierr); 56147c6ae99SBarry Smith ierr = DAVecRestoreArray(da,vfu,&fu);CHKERRQ(ierr); 56247c6ae99SBarry Smith PetscFunctionReturn(0); 56347c6ae99SBarry Smith } 56447c6ae99SBarry Smith 56547c6ae99SBarry Smith #undef __FUNCT__ 56647c6ae99SBarry Smith #define __FUNCT__ "DAFormFunctionLocal" 56747c6ae99SBarry Smith /*@C 56847c6ae99SBarry Smith DAFormFunctionLocal - This is a universal function evaluation routine for 56947c6ae99SBarry Smith a local DA function. 57047c6ae99SBarry Smith 57147c6ae99SBarry Smith Collective on DA 57247c6ae99SBarry Smith 57347c6ae99SBarry Smith Input Parameters: 57447c6ae99SBarry Smith + da - the DA context 57547c6ae99SBarry Smith . func - The local function 57647c6ae99SBarry Smith . X - input vector 57747c6ae99SBarry Smith . F - function vector 57847c6ae99SBarry Smith - ctx - A user context 57947c6ae99SBarry Smith 58047c6ae99SBarry Smith Level: intermediate 58147c6ae99SBarry Smith 58247c6ae99SBarry Smith .seealso: DASetLocalFunction(), DASetLocalJacobian(), DASetLocalAdicFunction(), DASetLocalAdicMFFunction(), 58347c6ae99SBarry Smith SNESSetFunction(), SNESSetJacobian() 58447c6ae99SBarry Smith 58547c6ae99SBarry Smith @*/ 58647c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormFunctionLocal(DA da, DALocalFunction1 func, Vec X, Vec F, void *ctx) 58747c6ae99SBarry Smith { 58847c6ae99SBarry Smith Vec localX; 58947c6ae99SBarry Smith DALocalInfo info; 59047c6ae99SBarry Smith void *u; 59147c6ae99SBarry Smith void *fu; 59247c6ae99SBarry Smith PetscErrorCode ierr; 59347c6ae99SBarry Smith 59447c6ae99SBarry Smith PetscFunctionBegin; 59547c6ae99SBarry Smith ierr = DAGetLocalVector(da,&localX);CHKERRQ(ierr); 59647c6ae99SBarry Smith /* 59747c6ae99SBarry Smith Scatter ghost points to local vector, using the 2-step process 59847c6ae99SBarry Smith DAGlobalToLocalBegin(), DAGlobalToLocalEnd(). 59947c6ae99SBarry Smith */ 60047c6ae99SBarry Smith ierr = DAGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 60147c6ae99SBarry Smith ierr = DAGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 60247c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 60347c6ae99SBarry Smith ierr = DAVecGetArray(da,localX,&u);CHKERRQ(ierr); 60447c6ae99SBarry Smith ierr = DAVecGetArray(da,F,&fu);CHKERRQ(ierr); 60547c6ae99SBarry Smith ierr = (*func)(&info,u,fu,ctx); 60647c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 60747c6ae99SBarry Smith PetscErrorCode pierr = DAVecRestoreArray(da,localX,&u);CHKERRQ(pierr); 60847c6ae99SBarry Smith pierr = DAVecRestoreArray(da,F,&fu);CHKERRQ(pierr); 60947c6ae99SBarry Smith } 61047c6ae99SBarry Smith CHKERRQ(ierr); 61147c6ae99SBarry Smith ierr = DAVecRestoreArray(da,localX,&u);CHKERRQ(ierr); 61247c6ae99SBarry Smith ierr = DAVecRestoreArray(da,F,&fu);CHKERRQ(ierr); 61347c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 61447c6ae99SBarry Smith PetscErrorCode pierr = DARestoreLocalVector(da,&localX);CHKERRQ(pierr); 61547c6ae99SBarry Smith } 61647c6ae99SBarry Smith CHKERRQ(ierr); 61747c6ae99SBarry Smith ierr = DARestoreLocalVector(da,&localX);CHKERRQ(ierr); 61847c6ae99SBarry Smith PetscFunctionReturn(0); 61947c6ae99SBarry Smith } 62047c6ae99SBarry Smith 62147c6ae99SBarry Smith #undef __FUNCT__ 62247c6ae99SBarry Smith #define __FUNCT__ "DAFormFunctionLocalGhost" 62347c6ae99SBarry Smith /*@C 62447c6ae99SBarry Smith DAFormFunctionLocalGhost - This is a universal function evaluation routine for 62547c6ae99SBarry Smith a local DA function, but the ghost values of the output are communicated and added. 62647c6ae99SBarry Smith 62747c6ae99SBarry Smith Collective on DA 62847c6ae99SBarry Smith 62947c6ae99SBarry Smith Input Parameters: 63047c6ae99SBarry Smith + da - the DA context 63147c6ae99SBarry Smith . func - The local function 63247c6ae99SBarry Smith . X - input vector 63347c6ae99SBarry Smith . F - function vector 63447c6ae99SBarry Smith - ctx - A user context 63547c6ae99SBarry Smith 63647c6ae99SBarry Smith Level: intermediate 63747c6ae99SBarry Smith 63847c6ae99SBarry Smith .seealso: DASetLocalFunction(), DASetLocalJacobian(), DASetLocalAdicFunction(), DASetLocalAdicMFFunction(), 63947c6ae99SBarry Smith SNESSetFunction(), SNESSetJacobian() 64047c6ae99SBarry Smith 64147c6ae99SBarry Smith @*/ 64247c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormFunctionLocalGhost(DA da, DALocalFunction1 func, Vec X, Vec F, void *ctx) 64347c6ae99SBarry Smith { 64447c6ae99SBarry Smith Vec localX, localF; 64547c6ae99SBarry Smith DALocalInfo info; 64647c6ae99SBarry Smith void *u; 64747c6ae99SBarry Smith void *fu; 64847c6ae99SBarry Smith PetscErrorCode ierr; 64947c6ae99SBarry Smith 65047c6ae99SBarry Smith PetscFunctionBegin; 65147c6ae99SBarry Smith ierr = DAGetLocalVector(da,&localX);CHKERRQ(ierr); 65247c6ae99SBarry Smith ierr = DAGetLocalVector(da,&localF);CHKERRQ(ierr); 65347c6ae99SBarry Smith /* 65447c6ae99SBarry Smith Scatter ghost points to local vector, using the 2-step process 65547c6ae99SBarry Smith DAGlobalToLocalBegin(), DAGlobalToLocalEnd(). 65647c6ae99SBarry Smith */ 65747c6ae99SBarry Smith ierr = DAGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 65847c6ae99SBarry Smith ierr = DAGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 65947c6ae99SBarry Smith ierr = VecSet(F, 0.0);CHKERRQ(ierr); 66047c6ae99SBarry Smith ierr = VecSet(localF, 0.0);CHKERRQ(ierr); 66147c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 66247c6ae99SBarry Smith ierr = DAVecGetArray(da,localX,&u);CHKERRQ(ierr); 66347c6ae99SBarry Smith ierr = DAVecGetArray(da,localF,&fu);CHKERRQ(ierr); 66447c6ae99SBarry Smith ierr = (*func)(&info,u,fu,ctx); 66547c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 66647c6ae99SBarry Smith PetscErrorCode pierr = DAVecRestoreArray(da,localX,&u);CHKERRQ(pierr); 66747c6ae99SBarry Smith pierr = DAVecRestoreArray(da,localF,&fu);CHKERRQ(pierr); 66847c6ae99SBarry Smith } 66947c6ae99SBarry Smith CHKERRQ(ierr); 67047c6ae99SBarry Smith ierr = DALocalToGlobalBegin(da,localF,F);CHKERRQ(ierr); 67147c6ae99SBarry Smith ierr = DALocalToGlobalEnd(da,localF,F);CHKERRQ(ierr); 67247c6ae99SBarry Smith ierr = DAVecRestoreArray(da,localX,&u);CHKERRQ(ierr); 67347c6ae99SBarry Smith ierr = DAVecRestoreArray(da,localF,&fu);CHKERRQ(ierr); 67447c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 67547c6ae99SBarry Smith PetscErrorCode pierr = DARestoreLocalVector(da,&localX);CHKERRQ(pierr); 67647c6ae99SBarry Smith ierr = DARestoreLocalVector(da,&localF);CHKERRQ(ierr); 67747c6ae99SBarry Smith } 67847c6ae99SBarry Smith CHKERRQ(ierr); 67947c6ae99SBarry Smith ierr = DARestoreLocalVector(da,&localX);CHKERRQ(ierr); 68047c6ae99SBarry Smith ierr = DARestoreLocalVector(da,&localF);CHKERRQ(ierr); 68147c6ae99SBarry Smith PetscFunctionReturn(0); 68247c6ae99SBarry Smith } 68347c6ae99SBarry Smith 68447c6ae99SBarry Smith #undef __FUNCT__ 68547c6ae99SBarry Smith #define __FUNCT__ "DAFormFunction1" 68647c6ae99SBarry Smith /*@ 68747c6ae99SBarry Smith DAFormFunction1 - Evaluates a user provided function on each processor that 68847c6ae99SBarry Smith share a DA 68947c6ae99SBarry Smith 69047c6ae99SBarry Smith Input Parameters: 69147c6ae99SBarry Smith + da - the DA that defines the grid 69247c6ae99SBarry Smith . vu - input vector 69347c6ae99SBarry Smith . vfu - output vector 69447c6ae99SBarry Smith - w - any user data 69547c6ae99SBarry Smith 69647c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu upon entry 69747c6ae99SBarry Smith 69847c6ae99SBarry Smith Level: advanced 69947c6ae99SBarry Smith 70047c6ae99SBarry Smith .seealso: DAComputeJacobian1WithAdic() 70147c6ae99SBarry Smith 70247c6ae99SBarry Smith @*/ 70347c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormFunction1(DA da,Vec vu,Vec vfu,void *w) 70447c6ae99SBarry Smith { 70547c6ae99SBarry Smith PetscErrorCode ierr; 70647c6ae99SBarry Smith void *u,*fu; 70747c6ae99SBarry Smith DALocalInfo info; 70847c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 70947c6ae99SBarry Smith 71047c6ae99SBarry Smith PetscFunctionBegin; 71147c6ae99SBarry Smith 71247c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 71347c6ae99SBarry Smith ierr = DAVecGetArray(da,vu,&u);CHKERRQ(ierr); 71447c6ae99SBarry Smith ierr = DAVecGetArray(da,vfu,&fu);CHKERRQ(ierr); 71547c6ae99SBarry Smith 71647c6ae99SBarry Smith CHKMEMQ; 71747c6ae99SBarry Smith ierr = (*dd->lf)(&info,u,fu,w); 71847c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 71947c6ae99SBarry Smith PetscErrorCode pierr = DAVecRestoreArray(da,vu,&u);CHKERRQ(pierr); 72047c6ae99SBarry Smith pierr = DAVecRestoreArray(da,vfu,&fu);CHKERRQ(pierr); 72147c6ae99SBarry Smith } 72247c6ae99SBarry Smith CHKERRQ(ierr); 72347c6ae99SBarry Smith CHKMEMQ; 72447c6ae99SBarry Smith 72547c6ae99SBarry Smith ierr = DAVecRestoreArray(da,vu,&u);CHKERRQ(ierr); 72647c6ae99SBarry Smith ierr = DAVecRestoreArray(da,vfu,&fu);CHKERRQ(ierr); 72747c6ae99SBarry Smith PetscFunctionReturn(0); 72847c6ae99SBarry Smith } 72947c6ae99SBarry Smith 73047c6ae99SBarry Smith #undef __FUNCT__ 73147c6ae99SBarry Smith #define __FUNCT__ "DAFormFunctioniTest1" 73247c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormFunctioniTest1(DA da,void *w) 73347c6ae99SBarry Smith { 73447c6ae99SBarry Smith Vec vu,fu,fui; 73547c6ae99SBarry Smith PetscErrorCode ierr; 73647c6ae99SBarry Smith PetscInt i,n; 73747c6ae99SBarry Smith PetscScalar *ui; 73847c6ae99SBarry Smith PetscRandom rnd; 73947c6ae99SBarry Smith PetscReal norm; 74047c6ae99SBarry Smith 74147c6ae99SBarry Smith PetscFunctionBegin; 74247c6ae99SBarry Smith ierr = DAGetLocalVector(da,&vu);CHKERRQ(ierr); 74347c6ae99SBarry Smith ierr = PetscRandomCreate(PETSC_COMM_SELF,&rnd);CHKERRQ(ierr); 74447c6ae99SBarry Smith ierr = PetscRandomSetFromOptions(rnd);CHKERRQ(ierr); 74547c6ae99SBarry Smith ierr = VecSetRandom(vu,rnd);CHKERRQ(ierr); 74647c6ae99SBarry Smith ierr = PetscRandomDestroy(rnd);CHKERRQ(ierr); 74747c6ae99SBarry Smith 74847c6ae99SBarry Smith ierr = DAGetGlobalVector(da,&fu);CHKERRQ(ierr); 74947c6ae99SBarry Smith ierr = DAGetGlobalVector(da,&fui);CHKERRQ(ierr); 75047c6ae99SBarry Smith 75147c6ae99SBarry Smith ierr = DAFormFunction1(da,vu,fu,w);CHKERRQ(ierr); 75247c6ae99SBarry Smith 75347c6ae99SBarry Smith ierr = VecGetArray(fui,&ui);CHKERRQ(ierr); 75447c6ae99SBarry Smith ierr = VecGetLocalSize(fui,&n);CHKERRQ(ierr); 75547c6ae99SBarry Smith for (i=0; i<n; i++) { 75647c6ae99SBarry Smith ierr = DAFormFunctioni1(da,i,vu,ui+i,w);CHKERRQ(ierr); 75747c6ae99SBarry Smith } 75847c6ae99SBarry Smith ierr = VecRestoreArray(fui,&ui);CHKERRQ(ierr); 75947c6ae99SBarry Smith 76047c6ae99SBarry Smith ierr = VecAXPY(fui,-1.0,fu);CHKERRQ(ierr); 76147c6ae99SBarry Smith ierr = VecNorm(fui,NORM_2,&norm);CHKERRQ(ierr); 76247c6ae99SBarry Smith ierr = PetscPrintf(((PetscObject)da)->comm,"Norm of difference in vectors %G\n",norm);CHKERRQ(ierr); 76347c6ae99SBarry Smith ierr = VecView(fu,0);CHKERRQ(ierr); 76447c6ae99SBarry Smith ierr = VecView(fui,0);CHKERRQ(ierr); 76547c6ae99SBarry Smith 76647c6ae99SBarry Smith ierr = DARestoreLocalVector(da,&vu);CHKERRQ(ierr); 76747c6ae99SBarry Smith ierr = DARestoreGlobalVector(da,&fu);CHKERRQ(ierr); 76847c6ae99SBarry Smith ierr = DARestoreGlobalVector(da,&fui);CHKERRQ(ierr); 76947c6ae99SBarry Smith PetscFunctionReturn(0); 77047c6ae99SBarry Smith } 77147c6ae99SBarry Smith 77247c6ae99SBarry Smith #undef __FUNCT__ 77347c6ae99SBarry Smith #define __FUNCT__ "DAFormFunctioni1" 77447c6ae99SBarry Smith /*@ 77547c6ae99SBarry Smith DAFormFunctioni1 - Evaluates a user provided point-wise function 77647c6ae99SBarry Smith 77747c6ae99SBarry Smith Input Parameters: 77847c6ae99SBarry Smith + da - the DA that defines the grid 77947c6ae99SBarry Smith . i - the component of the function we wish to compute (must be local) 78047c6ae99SBarry Smith . vu - input vector 78147c6ae99SBarry Smith . vfu - output value 78247c6ae99SBarry Smith - w - any user data 78347c6ae99SBarry Smith 78447c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu upon entry 78547c6ae99SBarry Smith 78647c6ae99SBarry Smith Level: advanced 78747c6ae99SBarry Smith 78847c6ae99SBarry Smith .seealso: DAComputeJacobian1WithAdic() 78947c6ae99SBarry Smith 79047c6ae99SBarry Smith @*/ 79147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormFunctioni1(DA da,PetscInt i,Vec vu,PetscScalar *vfu,void *w) 79247c6ae99SBarry Smith { 79347c6ae99SBarry Smith PetscErrorCode ierr; 79447c6ae99SBarry Smith void *u; 79547c6ae99SBarry Smith DALocalInfo info; 79647c6ae99SBarry Smith MatStencil stencil; 79747c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 79847c6ae99SBarry Smith 79947c6ae99SBarry Smith PetscFunctionBegin; 80047c6ae99SBarry Smith 80147c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 80247c6ae99SBarry Smith ierr = DAVecGetArray(da,vu,&u);CHKERRQ(ierr); 80347c6ae99SBarry Smith 80447c6ae99SBarry Smith /* figure out stencil value from i */ 80547c6ae99SBarry Smith stencil.c = i % info.dof; 80647c6ae99SBarry Smith stencil.i = (i % (info.xm*info.dof))/info.dof; 80747c6ae99SBarry Smith stencil.j = (i % (info.xm*info.ym*info.dof))/(info.xm*info.dof); 80847c6ae99SBarry Smith stencil.k = i/(info.xm*info.ym*info.dof); 80947c6ae99SBarry Smith 81047c6ae99SBarry Smith ierr = (*dd->lfi)(&info,&stencil,u,vfu,w);CHKERRQ(ierr); 81147c6ae99SBarry Smith 81247c6ae99SBarry Smith ierr = DAVecRestoreArray(da,vu,&u);CHKERRQ(ierr); 81347c6ae99SBarry Smith PetscFunctionReturn(0); 81447c6ae99SBarry Smith } 81547c6ae99SBarry Smith 81647c6ae99SBarry Smith #undef __FUNCT__ 81747c6ae99SBarry Smith #define __FUNCT__ "DAFormFunctionib1" 81847c6ae99SBarry Smith /*@ 81947c6ae99SBarry Smith DAFormFunctionib1 - Evaluates a user provided point-block function 82047c6ae99SBarry Smith 82147c6ae99SBarry Smith Input Parameters: 82247c6ae99SBarry Smith + da - the DA that defines the grid 82347c6ae99SBarry Smith . i - the component of the function we wish to compute (must be local) 82447c6ae99SBarry Smith . vu - input vector 82547c6ae99SBarry Smith . vfu - output value 82647c6ae99SBarry Smith - w - any user data 82747c6ae99SBarry Smith 82847c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu upon entry 82947c6ae99SBarry Smith 83047c6ae99SBarry Smith Level: advanced 83147c6ae99SBarry Smith 83247c6ae99SBarry Smith .seealso: DAComputeJacobian1WithAdic() 83347c6ae99SBarry Smith 83447c6ae99SBarry Smith @*/ 83547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormFunctionib1(DA da,PetscInt i,Vec vu,PetscScalar *vfu,void *w) 83647c6ae99SBarry Smith { 83747c6ae99SBarry Smith PetscErrorCode ierr; 83847c6ae99SBarry Smith void *u; 83947c6ae99SBarry Smith DALocalInfo info; 84047c6ae99SBarry Smith MatStencil stencil; 84147c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 84247c6ae99SBarry Smith 84347c6ae99SBarry Smith PetscFunctionBegin; 84447c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 84547c6ae99SBarry Smith ierr = DAVecGetArray(da,vu,&u);CHKERRQ(ierr); 84647c6ae99SBarry Smith 84747c6ae99SBarry Smith /* figure out stencil value from i */ 84847c6ae99SBarry Smith stencil.c = i % info.dof; 84947c6ae99SBarry Smith if (stencil.c) SETERRQ(((PetscObject)da)->comm,PETSC_ERR_ARG_WRONG,"Point-block functions can only be called for the entire block"); 85047c6ae99SBarry Smith stencil.i = (i % (info.xm*info.dof))/info.dof; 85147c6ae99SBarry Smith stencil.j = (i % (info.xm*info.ym*info.dof))/(info.xm*info.dof); 85247c6ae99SBarry Smith stencil.k = i/(info.xm*info.ym*info.dof); 85347c6ae99SBarry Smith 85447c6ae99SBarry Smith ierr = (*dd->lfib)(&info,&stencil,u,vfu,w);CHKERRQ(ierr); 85547c6ae99SBarry Smith 85647c6ae99SBarry Smith ierr = DAVecRestoreArray(da,vu,&u);CHKERRQ(ierr); 85747c6ae99SBarry Smith PetscFunctionReturn(0); 85847c6ae99SBarry Smith } 85947c6ae99SBarry Smith 86047c6ae99SBarry Smith #if defined(new) 86147c6ae99SBarry Smith #undef __FUNCT__ 86247c6ae99SBarry Smith #define __FUNCT__ "DAGetDiagonal_MFFD" 86347c6ae99SBarry Smith /* 86447c6ae99SBarry Smith DAGetDiagonal_MFFD - Gets the diagonal for a matrix free matrix where local 86547c6ae99SBarry Smith function lives on a DA 86647c6ae99SBarry Smith 86747c6ae99SBarry Smith y ~= (F(u + ha) - F(u))/h, 86847c6ae99SBarry Smith where F = nonlinear function, as set by SNESSetFunction() 86947c6ae99SBarry Smith u = current iterate 87047c6ae99SBarry Smith h = difference interval 87147c6ae99SBarry Smith */ 87247c6ae99SBarry Smith PetscErrorCode DAGetDiagonal_MFFD(DA da,Vec U,Vec a) 87347c6ae99SBarry Smith { 87447c6ae99SBarry Smith PetscScalar h,*aa,*ww,v; 87547c6ae99SBarry Smith PetscReal epsilon = PETSC_SQRT_MACHINE_EPSILON,umin = 100.0*PETSC_SQRT_MACHINE_EPSILON; 87647c6ae99SBarry Smith PetscErrorCode ierr; 87747c6ae99SBarry Smith PetscInt gI,nI; 87847c6ae99SBarry Smith MatStencil stencil; 87947c6ae99SBarry Smith DALocalInfo info; 88047c6ae99SBarry Smith 88147c6ae99SBarry Smith PetscFunctionBegin; 88247c6ae99SBarry Smith ierr = (*ctx->func)(0,U,a,ctx->funcctx);CHKERRQ(ierr); 88347c6ae99SBarry Smith ierr = (*ctx->funcisetbase)(U,ctx->funcctx);CHKERRQ(ierr); 88447c6ae99SBarry Smith 88547c6ae99SBarry Smith ierr = VecGetArray(U,&ww);CHKERRQ(ierr); 88647c6ae99SBarry Smith ierr = VecGetArray(a,&aa);CHKERRQ(ierr); 88747c6ae99SBarry Smith 88847c6ae99SBarry Smith nI = 0; 88947c6ae99SBarry Smith h = ww[gI]; 89047c6ae99SBarry Smith if (h == 0.0) h = 1.0; 89147c6ae99SBarry Smith #if !defined(PETSC_USE_COMPLEX) 89247c6ae99SBarry Smith if (h < umin && h >= 0.0) h = umin; 89347c6ae99SBarry Smith else if (h < 0.0 && h > -umin) h = -umin; 89447c6ae99SBarry Smith #else 89547c6ae99SBarry Smith if (PetscAbsScalar(h) < umin && PetscRealPart(h) >= 0.0) h = umin; 89647c6ae99SBarry Smith else if (PetscRealPart(h) < 0.0 && PetscAbsScalar(h) < umin) h = -umin; 89747c6ae99SBarry Smith #endif 89847c6ae99SBarry Smith h *= epsilon; 89947c6ae99SBarry Smith 90047c6ae99SBarry Smith ww[gI] += h; 90147c6ae99SBarry Smith ierr = (*ctx->funci)(i,w,&v,ctx->funcctx);CHKERRQ(ierr); 90247c6ae99SBarry Smith aa[nI] = (v - aa[nI])/h; 90347c6ae99SBarry Smith ww[gI] -= h; 90447c6ae99SBarry Smith nI++; 90547c6ae99SBarry Smith } 90647c6ae99SBarry Smith ierr = VecRestoreArray(U,&ww);CHKERRQ(ierr); 90747c6ae99SBarry Smith ierr = VecRestoreArray(a,&aa);CHKERRQ(ierr); 90847c6ae99SBarry Smith PetscFunctionReturn(0); 90947c6ae99SBarry Smith } 91047c6ae99SBarry Smith #endif 91147c6ae99SBarry Smith 91247c6ae99SBarry Smith #if defined(PETSC_HAVE_ADIC) 91347c6ae99SBarry Smith EXTERN_C_BEGIN 91447c6ae99SBarry Smith #include "adic/ad_utils.h" 91547c6ae99SBarry Smith EXTERN_C_END 91647c6ae99SBarry Smith 91747c6ae99SBarry Smith #undef __FUNCT__ 91847c6ae99SBarry Smith #define __FUNCT__ "DAComputeJacobian1WithAdic" 91947c6ae99SBarry Smith /*@C 92047c6ae99SBarry Smith DAComputeJacobian1WithAdic - Evaluates a adiC provided Jacobian function on each processor that 92147c6ae99SBarry Smith share a DA 92247c6ae99SBarry Smith 92347c6ae99SBarry Smith Input Parameters: 92447c6ae99SBarry Smith + da - the DA that defines the grid 92547c6ae99SBarry Smith . vu - input vector (ghosted) 92647c6ae99SBarry Smith . J - output matrix 92747c6ae99SBarry Smith - w - any user data 92847c6ae99SBarry Smith 92947c6ae99SBarry Smith Level: advanced 93047c6ae99SBarry Smith 93147c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu upon entry 93247c6ae99SBarry Smith 93347c6ae99SBarry Smith .seealso: DAFormFunction1() 93447c6ae99SBarry Smith 93547c6ae99SBarry Smith @*/ 93647c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAComputeJacobian1WithAdic(DA da,Vec vu,Mat J,void *w) 93747c6ae99SBarry Smith { 93847c6ae99SBarry Smith PetscErrorCode ierr; 93947c6ae99SBarry Smith PetscInt gtdof,tdof; 94047c6ae99SBarry Smith PetscScalar *ustart; 94147c6ae99SBarry Smith DALocalInfo info; 94247c6ae99SBarry Smith void *ad_u,*ad_f,*ad_ustart,*ad_fstart; 94347c6ae99SBarry Smith ISColoring iscoloring; 94447c6ae99SBarry Smith 94547c6ae99SBarry Smith PetscFunctionBegin; 94647c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 94747c6ae99SBarry Smith 94847c6ae99SBarry Smith PetscADResetIndep(); 94947c6ae99SBarry Smith 95047c6ae99SBarry Smith /* get space for derivative objects. */ 95147c6ae99SBarry Smith ierr = DAGetAdicArray(da,PETSC_TRUE,&ad_u,&ad_ustart,>dof);CHKERRQ(ierr); 95247c6ae99SBarry Smith ierr = DAGetAdicArray(da,PETSC_FALSE,&ad_f,&ad_fstart,&tdof);CHKERRQ(ierr); 95347c6ae99SBarry Smith ierr = VecGetArray(vu,&ustart);CHKERRQ(ierr); 95447c6ae99SBarry Smith ierr = DAGetColoring(da,IS_COLORING_GHOSTED,MATAIJ,&iscoloring);CHKERRQ(ierr); 95547c6ae99SBarry Smith 95647c6ae99SBarry Smith PetscADSetValueAndColor(ad_ustart,gtdof,iscoloring->colors,ustart); 95747c6ae99SBarry Smith 95847c6ae99SBarry Smith ierr = VecRestoreArray(vu,&ustart);CHKERRQ(ierr); 95947c6ae99SBarry Smith ierr = ISColoringDestroy(iscoloring);CHKERRQ(ierr); 96047c6ae99SBarry Smith ierr = PetscADIncrementTotalGradSize(iscoloring->n);CHKERRQ(ierr); 96147c6ae99SBarry Smith PetscADSetIndepDone(); 96247c6ae99SBarry Smith 96347c6ae99SBarry Smith ierr = PetscLogEventBegin(DA_LocalADFunction,0,0,0,0);CHKERRQ(ierr); 96447c6ae99SBarry Smith ierr = (*dd->adic_lf)(&info,ad_u,ad_f,w);CHKERRQ(ierr); 96547c6ae99SBarry Smith ierr = PetscLogEventEnd(DA_LocalADFunction,0,0,0,0);CHKERRQ(ierr); 96647c6ae99SBarry Smith 96747c6ae99SBarry Smith /* stick the values into the matrix */ 96847c6ae99SBarry Smith ierr = MatSetValuesAdic(J,(PetscScalar**)ad_fstart);CHKERRQ(ierr); 96947c6ae99SBarry Smith 97047c6ae99SBarry Smith /* return space for derivative objects. */ 97147c6ae99SBarry Smith ierr = DARestoreAdicArray(da,PETSC_TRUE,&ad_u,&ad_ustart,>dof);CHKERRQ(ierr); 97247c6ae99SBarry Smith ierr = DARestoreAdicArray(da,PETSC_FALSE,&ad_f,&ad_fstart,&tdof);CHKERRQ(ierr); 97347c6ae99SBarry Smith PetscFunctionReturn(0); 97447c6ae99SBarry Smith } 97547c6ae99SBarry Smith 97647c6ae99SBarry Smith #undef __FUNCT__ 97747c6ae99SBarry Smith #define __FUNCT__ "DAMultiplyByJacobian1WithAdic" 97847c6ae99SBarry Smith /*@C 97947c6ae99SBarry Smith DAMultiplyByJacobian1WithAdic - Applies an ADIC-provided Jacobian function to a vector on 98047c6ae99SBarry Smith each processor that shares a DA. 98147c6ae99SBarry Smith 98247c6ae99SBarry Smith Input Parameters: 98347c6ae99SBarry Smith + da - the DA that defines the grid 98447c6ae99SBarry Smith . vu - Jacobian is computed at this point (ghosted) 98547c6ae99SBarry Smith . v - product is done on this vector (ghosted) 98647c6ae99SBarry Smith . fu - output vector = J(vu)*v (not ghosted) 98747c6ae99SBarry Smith - w - any user data 98847c6ae99SBarry Smith 98947c6ae99SBarry Smith Notes: 99047c6ae99SBarry Smith This routine does NOT do ghost updates on vu upon entry. 99147c6ae99SBarry Smith 99247c6ae99SBarry Smith Level: advanced 99347c6ae99SBarry Smith 99447c6ae99SBarry Smith .seealso: DAFormFunction1() 99547c6ae99SBarry Smith 99647c6ae99SBarry Smith @*/ 99747c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAMultiplyByJacobian1WithAdic(DA da,Vec vu,Vec v,Vec f,void *w) 99847c6ae99SBarry Smith { 99947c6ae99SBarry Smith PetscErrorCode ierr; 100047c6ae99SBarry Smith PetscInt i,gtdof,tdof; 100147c6ae99SBarry Smith PetscScalar *avu,*av,*af,*ad_vustart,*ad_fstart; 100247c6ae99SBarry Smith DALocalInfo info; 100347c6ae99SBarry Smith void *ad_vu,*ad_f; 100447c6ae99SBarry Smith 100547c6ae99SBarry Smith PetscFunctionBegin; 100647c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 100747c6ae99SBarry Smith 100847c6ae99SBarry Smith /* get space for derivative objects. */ 100947c6ae99SBarry Smith ierr = DAGetAdicMFArray(da,PETSC_TRUE,&ad_vu,&ad_vustart,>dof);CHKERRQ(ierr); 101047c6ae99SBarry Smith ierr = DAGetAdicMFArray(da,PETSC_FALSE,&ad_f,&ad_fstart,&tdof);CHKERRQ(ierr); 101147c6ae99SBarry Smith 101247c6ae99SBarry Smith /* copy input vector into derivative object */ 101347c6ae99SBarry Smith ierr = VecGetArray(vu,&avu);CHKERRQ(ierr); 101447c6ae99SBarry Smith ierr = VecGetArray(v,&av);CHKERRQ(ierr); 101547c6ae99SBarry Smith for (i=0; i<gtdof; i++) { 101647c6ae99SBarry Smith ad_vustart[2*i] = avu[i]; 101747c6ae99SBarry Smith ad_vustart[2*i+1] = av[i]; 101847c6ae99SBarry Smith } 101947c6ae99SBarry Smith ierr = VecRestoreArray(vu,&avu);CHKERRQ(ierr); 102047c6ae99SBarry Smith ierr = VecRestoreArray(v,&av);CHKERRQ(ierr); 102147c6ae99SBarry Smith 102247c6ae99SBarry Smith PetscADResetIndep(); 102347c6ae99SBarry Smith ierr = PetscADIncrementTotalGradSize(1);CHKERRQ(ierr); 102447c6ae99SBarry Smith PetscADSetIndepDone(); 102547c6ae99SBarry Smith 102647c6ae99SBarry Smith ierr = (*dd->adicmf_lf)(&info,ad_vu,ad_f,w);CHKERRQ(ierr); 102747c6ae99SBarry Smith 102847c6ae99SBarry Smith /* stick the values into the vector */ 102947c6ae99SBarry Smith ierr = VecGetArray(f,&af);CHKERRQ(ierr); 103047c6ae99SBarry Smith for (i=0; i<tdof; i++) { 103147c6ae99SBarry Smith af[i] = ad_fstart[2*i+1]; 103247c6ae99SBarry Smith } 103347c6ae99SBarry Smith ierr = VecRestoreArray(f,&af);CHKERRQ(ierr); 103447c6ae99SBarry Smith 103547c6ae99SBarry Smith /* return space for derivative objects. */ 103647c6ae99SBarry Smith ierr = DARestoreAdicMFArray(da,PETSC_TRUE,&ad_vu,&ad_vustart,>dof);CHKERRQ(ierr); 103747c6ae99SBarry Smith ierr = DARestoreAdicMFArray(da,PETSC_FALSE,&ad_f,&ad_fstart,&tdof);CHKERRQ(ierr); 103847c6ae99SBarry Smith PetscFunctionReturn(0); 103947c6ae99SBarry Smith } 104047c6ae99SBarry Smith #endif 104147c6ae99SBarry Smith 104247c6ae99SBarry Smith #undef __FUNCT__ 104347c6ae99SBarry Smith #define __FUNCT__ "DAComputeJacobian1" 104447c6ae99SBarry Smith /*@ 104547c6ae99SBarry Smith DAComputeJacobian1 - Evaluates a local Jacobian function on each processor that 104647c6ae99SBarry Smith share a DA 104747c6ae99SBarry Smith 104847c6ae99SBarry Smith Input Parameters: 104947c6ae99SBarry Smith + da - the DA that defines the grid 105047c6ae99SBarry Smith . vu - input vector (ghosted) 105147c6ae99SBarry Smith . J - output matrix 105247c6ae99SBarry Smith - w - any user data 105347c6ae99SBarry Smith 105447c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu upon entry 105547c6ae99SBarry Smith 105647c6ae99SBarry Smith Level: advanced 105747c6ae99SBarry Smith 105847c6ae99SBarry Smith .seealso: DAFormFunction1() 105947c6ae99SBarry Smith 106047c6ae99SBarry Smith @*/ 106147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAComputeJacobian1(DA da,Vec vu,Mat J,void *w) 106247c6ae99SBarry Smith { 106347c6ae99SBarry Smith PetscErrorCode ierr; 106447c6ae99SBarry Smith void *u; 106547c6ae99SBarry Smith DALocalInfo info; 106647c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 106747c6ae99SBarry Smith 106847c6ae99SBarry Smith PetscFunctionBegin; 106947c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 107047c6ae99SBarry Smith ierr = DAVecGetArray(da,vu,&u);CHKERRQ(ierr); 107147c6ae99SBarry Smith ierr = (*dd->lj)(&info,u,J,w);CHKERRQ(ierr); 107247c6ae99SBarry Smith ierr = DAVecRestoreArray(da,vu,&u);CHKERRQ(ierr); 107347c6ae99SBarry Smith PetscFunctionReturn(0); 107447c6ae99SBarry Smith } 107547c6ae99SBarry Smith 107647c6ae99SBarry Smith 107747c6ae99SBarry Smith #undef __FUNCT__ 107847c6ae99SBarry Smith #define __FUNCT__ "DAComputeJacobian1WithAdifor" 107947c6ae99SBarry Smith /* 108047c6ae99SBarry Smith DAComputeJacobian1WithAdifor - Evaluates a ADIFOR provided Jacobian local function on each processor that 108147c6ae99SBarry Smith share a DA 108247c6ae99SBarry Smith 108347c6ae99SBarry Smith Input Parameters: 108447c6ae99SBarry Smith + da - the DA that defines the grid 108547c6ae99SBarry Smith . vu - input vector (ghosted) 108647c6ae99SBarry Smith . J - output matrix 108747c6ae99SBarry Smith - w - any user data 108847c6ae99SBarry Smith 108947c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu upon entry 109047c6ae99SBarry Smith 109147c6ae99SBarry Smith .seealso: DAFormFunction1() 109247c6ae99SBarry Smith 109347c6ae99SBarry Smith */ 109447c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAComputeJacobian1WithAdifor(DA da,Vec vu,Mat J,void *w) 109547c6ae99SBarry Smith { 109647c6ae99SBarry Smith PetscErrorCode ierr; 109747c6ae99SBarry Smith PetscInt i,Nc,N; 109847c6ae99SBarry Smith ISColoringValue *color; 109947c6ae99SBarry Smith DALocalInfo info; 110047c6ae99SBarry Smith PetscScalar *u,*g_u,*g_f,*f = 0,*p_u; 110147c6ae99SBarry Smith ISColoring iscoloring; 110247c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 110347c6ae99SBarry Smith void (*lf)(PetscInt*,DALocalInfo*,PetscScalar*,PetscScalar*,PetscInt*,PetscScalar*,PetscScalar*,PetscInt*,void*,PetscErrorCode*) = 110447c6ae99SBarry Smith (void (*)(PetscInt*,DALocalInfo*,PetscScalar*,PetscScalar*,PetscInt*,PetscScalar*,PetscScalar*,PetscInt*,void*,PetscErrorCode*))*dd->adifor_lf; 110547c6ae99SBarry Smith 110647c6ae99SBarry Smith PetscFunctionBegin; 110747c6ae99SBarry Smith ierr = DAGetColoring(da,IS_COLORING_GHOSTED,MATAIJ,&iscoloring);CHKERRQ(ierr); 110847c6ae99SBarry Smith Nc = iscoloring->n; 110947c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 111047c6ae99SBarry Smith N = info.gxm*info.gym*info.gzm*info.dof; 111147c6ae99SBarry Smith 111247c6ae99SBarry Smith /* get space for derivative objects. */ 111347c6ae99SBarry Smith ierr = PetscMalloc(Nc*info.gxm*info.gym*info.gzm*info.dof*sizeof(PetscScalar),&g_u);CHKERRQ(ierr); 111447c6ae99SBarry Smith ierr = PetscMemzero(g_u,Nc*info.gxm*info.gym*info.gzm*info.dof*sizeof(PetscScalar));CHKERRQ(ierr); 111547c6ae99SBarry Smith p_u = g_u; 111647c6ae99SBarry Smith color = iscoloring->colors; 111747c6ae99SBarry Smith for (i=0; i<N; i++) { 111847c6ae99SBarry Smith p_u[*color++] = 1.0; 111947c6ae99SBarry Smith p_u += Nc; 112047c6ae99SBarry Smith } 112147c6ae99SBarry Smith ierr = ISColoringDestroy(iscoloring);CHKERRQ(ierr); 112247c6ae99SBarry Smith ierr = PetscMalloc2(Nc*info.xm*info.ym*info.zm*info.dof,PetscScalar,&g_f,info.xm*info.ym*info.zm*info.dof,PetscScalar,&f);CHKERRQ(ierr); 112347c6ae99SBarry Smith 112447c6ae99SBarry Smith /* Seed the input array g_u with coloring information */ 112547c6ae99SBarry Smith 112647c6ae99SBarry Smith ierr = VecGetArray(vu,&u);CHKERRQ(ierr); 112747c6ae99SBarry Smith (lf)(&Nc,&info,u,g_u,&Nc,f,g_f,&Nc,w,&ierr);CHKERRQ(ierr); 112847c6ae99SBarry Smith ierr = VecRestoreArray(vu,&u);CHKERRQ(ierr); 112947c6ae99SBarry Smith 113047c6ae99SBarry Smith /* stick the values into the matrix */ 113147c6ae99SBarry Smith /* PetscScalarView(Nc*info.xm*info.ym,g_f,0); */ 113247c6ae99SBarry Smith ierr = MatSetValuesAdifor(J,Nc,g_f);CHKERRQ(ierr); 113347c6ae99SBarry Smith 113447c6ae99SBarry Smith /* return space for derivative objects. */ 113547c6ae99SBarry Smith ierr = PetscFree(g_u);CHKERRQ(ierr); 113647c6ae99SBarry Smith ierr = PetscFree2(g_f,f);CHKERRQ(ierr); 113747c6ae99SBarry Smith PetscFunctionReturn(0); 113847c6ae99SBarry Smith } 113947c6ae99SBarry Smith 114047c6ae99SBarry Smith #undef __FUNCT__ 114147c6ae99SBarry Smith #define __FUNCT__ "DAFormJacobianLocal" 114247c6ae99SBarry Smith /*@C 114347c6ae99SBarry Smith DAFormjacobianLocal - This is a universal Jacobian evaluation routine for 114447c6ae99SBarry Smith a local DA function. 114547c6ae99SBarry Smith 114647c6ae99SBarry Smith Collective on DA 114747c6ae99SBarry Smith 114847c6ae99SBarry Smith Input Parameters: 114947c6ae99SBarry Smith + da - the DA context 115047c6ae99SBarry Smith . func - The local function 115147c6ae99SBarry Smith . X - input vector 115247c6ae99SBarry Smith . J - Jacobian matrix 115347c6ae99SBarry Smith - ctx - A user context 115447c6ae99SBarry Smith 115547c6ae99SBarry Smith Level: intermediate 115647c6ae99SBarry Smith 115747c6ae99SBarry Smith .seealso: DASetLocalFunction(), DASetLocalJacobian(), DASetLocalAdicFunction(), DASetLocalAdicMFFunction(), 115847c6ae99SBarry Smith SNESSetFunction(), SNESSetJacobian() 115947c6ae99SBarry Smith 116047c6ae99SBarry Smith @*/ 116147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAFormJacobianLocal(DA da, DALocalFunction1 func, Vec X, Mat J, void *ctx) 116247c6ae99SBarry Smith { 116347c6ae99SBarry Smith Vec localX; 116447c6ae99SBarry Smith DALocalInfo info; 116547c6ae99SBarry Smith void *u; 116647c6ae99SBarry Smith PetscErrorCode ierr; 116747c6ae99SBarry Smith 116847c6ae99SBarry Smith PetscFunctionBegin; 116947c6ae99SBarry Smith ierr = DAGetLocalVector(da,&localX);CHKERRQ(ierr); 117047c6ae99SBarry Smith /* 117147c6ae99SBarry Smith Scatter ghost points to local vector, using the 2-step process 117247c6ae99SBarry Smith DAGlobalToLocalBegin(), DAGlobalToLocalEnd(). 117347c6ae99SBarry Smith */ 117447c6ae99SBarry Smith ierr = DAGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 117547c6ae99SBarry Smith ierr = DAGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 117647c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 117747c6ae99SBarry Smith ierr = DAVecGetArray(da,localX,&u);CHKERRQ(ierr); 117847c6ae99SBarry Smith ierr = (*func)(&info,u,J,ctx); 117947c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 118047c6ae99SBarry Smith PetscErrorCode pierr = DAVecRestoreArray(da,localX,&u);CHKERRQ(pierr); 118147c6ae99SBarry Smith } 118247c6ae99SBarry Smith CHKERRQ(ierr); 118347c6ae99SBarry Smith ierr = DAVecRestoreArray(da,localX,&u);CHKERRQ(ierr); 118447c6ae99SBarry Smith if (PetscExceptionValue(ierr)) { 118547c6ae99SBarry Smith PetscErrorCode pierr = DARestoreLocalVector(da,&localX);CHKERRQ(pierr); 118647c6ae99SBarry Smith } 118747c6ae99SBarry Smith CHKERRQ(ierr); 118847c6ae99SBarry Smith ierr = DARestoreLocalVector(da,&localX);CHKERRQ(ierr); 118947c6ae99SBarry Smith PetscFunctionReturn(0); 119047c6ae99SBarry Smith } 119147c6ae99SBarry Smith 119247c6ae99SBarry Smith #undef __FUNCT__ 119347c6ae99SBarry Smith #define __FUNCT__ "DAMultiplyByJacobian1WithAD" 119447c6ae99SBarry Smith /*@C 119547c6ae99SBarry Smith DAMultiplyByJacobian1WithAD - Applies a Jacobian function supplied by ADIFOR or ADIC 119647c6ae99SBarry Smith to a vector on each processor that shares a DA. 119747c6ae99SBarry Smith 119847c6ae99SBarry Smith Input Parameters: 119947c6ae99SBarry Smith + da - the DA that defines the grid 120047c6ae99SBarry Smith . vu - Jacobian is computed at this point (ghosted) 120147c6ae99SBarry Smith . v - product is done on this vector (ghosted) 120247c6ae99SBarry Smith . fu - output vector = J(vu)*v (not ghosted) 120347c6ae99SBarry Smith - w - any user data 120447c6ae99SBarry Smith 120547c6ae99SBarry Smith Notes: 120647c6ae99SBarry Smith This routine does NOT do ghost updates on vu and v upon entry. 120747c6ae99SBarry Smith 120847c6ae99SBarry Smith Automatically calls DAMultiplyByJacobian1WithAdifor() or DAMultiplyByJacobian1WithAdic() 120947c6ae99SBarry Smith depending on whether DASetLocalAdicMFFunction() or DASetLocalAdiforMFFunction() was called. 121047c6ae99SBarry Smith 121147c6ae99SBarry Smith Level: advanced 121247c6ae99SBarry Smith 121347c6ae99SBarry Smith .seealso: DAFormFunction1(), DAMultiplyByJacobian1WithAdifor(), DAMultiplyByJacobian1WithAdic() 121447c6ae99SBarry Smith 121547c6ae99SBarry Smith @*/ 121647c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAMultiplyByJacobian1WithAD(DA da,Vec u,Vec v,Vec f,void *w) 121747c6ae99SBarry Smith { 121847c6ae99SBarry Smith PetscErrorCode ierr; 121947c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 122047c6ae99SBarry Smith 122147c6ae99SBarry Smith PetscFunctionBegin; 122247c6ae99SBarry Smith if (dd->adicmf_lf) { 122347c6ae99SBarry Smith #if defined(PETSC_HAVE_ADIC) 122447c6ae99SBarry Smith ierr = DAMultiplyByJacobian1WithAdic(da,u,v,f,w);CHKERRQ(ierr); 122547c6ae99SBarry Smith #else 122647c6ae99SBarry Smith SETERRQ(((PetscObject)da)->comm,PETSC_ERR_SUP_SYS,"Requires ADIC to be installed and cannot use complex numbers"); 122747c6ae99SBarry Smith #endif 122847c6ae99SBarry Smith } else if (dd->adiformf_lf) { 122947c6ae99SBarry Smith ierr = DAMultiplyByJacobian1WithAdifor(da,u,v,f,w);CHKERRQ(ierr); 123047c6ae99SBarry Smith } else { 123147c6ae99SBarry Smith SETERRQ(((PetscObject)da)->comm,PETSC_ERR_ORDER,"Must call DASetLocalAdiforMFFunction() or DASetLocalAdicMFFunction() before using"); 123247c6ae99SBarry Smith } 123347c6ae99SBarry Smith PetscFunctionReturn(0); 123447c6ae99SBarry Smith } 123547c6ae99SBarry Smith 123647c6ae99SBarry Smith 123747c6ae99SBarry Smith #undef __FUNCT__ 123847c6ae99SBarry Smith #define __FUNCT__ "DAMultiplyByJacobian1WithAdifor" 123947c6ae99SBarry Smith /*@C 124047c6ae99SBarry Smith DAMultiplyByJacobian1WithAdifor - Applies a ADIFOR provided Jacobian function on each processor that 124147c6ae99SBarry Smith share a DA to a vector 124247c6ae99SBarry Smith 124347c6ae99SBarry Smith Input Parameters: 124447c6ae99SBarry Smith + da - the DA that defines the grid 124547c6ae99SBarry Smith . vu - Jacobian is computed at this point (ghosted) 124647c6ae99SBarry Smith . v - product is done on this vector (ghosted) 124747c6ae99SBarry Smith . fu - output vector = J(vu)*v (not ghosted) 124847c6ae99SBarry Smith - w - any user data 124947c6ae99SBarry Smith 125047c6ae99SBarry Smith Notes: Does NOT do ghost updates on vu and v upon entry 125147c6ae99SBarry Smith 125247c6ae99SBarry Smith Level: advanced 125347c6ae99SBarry Smith 125447c6ae99SBarry Smith .seealso: DAFormFunction1() 125547c6ae99SBarry Smith 125647c6ae99SBarry Smith @*/ 125747c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DAMultiplyByJacobian1WithAdifor(DA da,Vec u,Vec v,Vec f,void *w) 125847c6ae99SBarry Smith { 125947c6ae99SBarry Smith PetscErrorCode ierr; 126047c6ae99SBarry Smith PetscScalar *au,*av,*af,*awork; 126147c6ae99SBarry Smith Vec work; 126247c6ae99SBarry Smith DALocalInfo info; 126347c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 126447c6ae99SBarry Smith void (*lf)(DALocalInfo*,PetscScalar*,PetscScalar*,PetscScalar*,PetscScalar*,void*,PetscErrorCode*) = 126547c6ae99SBarry Smith (void (*)(DALocalInfo*,PetscScalar*,PetscScalar*,PetscScalar*,PetscScalar*,void*,PetscErrorCode*))*dd->adiformf_lf; 126647c6ae99SBarry Smith 126747c6ae99SBarry Smith PetscFunctionBegin; 126847c6ae99SBarry Smith ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr); 126947c6ae99SBarry Smith 127047c6ae99SBarry Smith ierr = DAGetGlobalVector(da,&work);CHKERRQ(ierr); 127147c6ae99SBarry Smith ierr = VecGetArray(u,&au);CHKERRQ(ierr); 127247c6ae99SBarry Smith ierr = VecGetArray(v,&av);CHKERRQ(ierr); 127347c6ae99SBarry Smith ierr = VecGetArray(f,&af);CHKERRQ(ierr); 127447c6ae99SBarry Smith ierr = VecGetArray(work,&awork);CHKERRQ(ierr); 127547c6ae99SBarry Smith (lf)(&info,au,av,awork,af,w,&ierr);CHKERRQ(ierr); 127647c6ae99SBarry Smith ierr = VecRestoreArray(u,&au);CHKERRQ(ierr); 127747c6ae99SBarry Smith ierr = VecRestoreArray(v,&av);CHKERRQ(ierr); 127847c6ae99SBarry Smith ierr = VecRestoreArray(f,&af);CHKERRQ(ierr); 127947c6ae99SBarry Smith ierr = VecRestoreArray(work,&awork);CHKERRQ(ierr); 128047c6ae99SBarry Smith ierr = DARestoreGlobalVector(da,&work);CHKERRQ(ierr); 128147c6ae99SBarry Smith 128247c6ae99SBarry Smith PetscFunctionReturn(0); 128347c6ae99SBarry Smith } 128447c6ae99SBarry Smith 128547c6ae99SBarry Smith EXTERN_C_BEGIN 128647c6ae99SBarry Smith #undef __FUNCT__ 128747c6ae99SBarry Smith #define __FUNCT__ "DACreate_2D" 128847c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DACreate_2D(DA da) 128947c6ae99SBarry Smith { 129047c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 129147c6ae99SBarry Smith const PetscInt dim = dd->dim; 129247c6ae99SBarry Smith const PetscInt M = dd->M; 129347c6ae99SBarry Smith const PetscInt N = dd->N; 129447c6ae99SBarry Smith PetscInt m = dd->m; 129547c6ae99SBarry Smith PetscInt n = dd->n; 129647c6ae99SBarry Smith const PetscInt dof = dd->w; 129747c6ae99SBarry Smith const PetscInt s = dd->s; 129847c6ae99SBarry Smith const DAPeriodicType wrap = dd->wrap; 129947c6ae99SBarry Smith const DAStencilType stencil_type = dd->stencil_type; 130047c6ae99SBarry Smith PetscInt *lx = dd->lx; 130147c6ae99SBarry Smith PetscInt *ly = dd->ly; 130247c6ae99SBarry Smith MPI_Comm comm; 130347c6ae99SBarry Smith PetscMPIInt rank,size; 130447c6ae99SBarry Smith PetscInt xs,xe,ys,ye,x,y,Xs,Xe,Ys,Ye,start,end; 130547c6ae99SBarry Smith PetscInt up,down,left,i,n0,n1,n2,n3,n5,n6,n7,n8,*idx,nn; 130647c6ae99SBarry Smith PetscInt xbase,*bases,*ldims,j,x_t,y_t,s_t,base,count; 130747c6ae99SBarry Smith PetscInt s_x,s_y; /* s proportionalized to w */ 130847c6ae99SBarry Smith PetscInt sn0 = 0,sn2 = 0,sn6 = 0,sn8 = 0; 130947c6ae99SBarry Smith Vec local,global; 131047c6ae99SBarry Smith VecScatter ltog,gtol; 131147c6ae99SBarry Smith IS to,from; 131247c6ae99SBarry Smith PetscErrorCode ierr; 131347c6ae99SBarry Smith 131447c6ae99SBarry Smith PetscFunctionBegin; 131547c6ae99SBarry Smith #ifndef PETSC_USE_DYNAMIC_LIBRARIES 131647c6ae99SBarry Smith ierr = DMInitializePackage(PETSC_NULL);CHKERRQ(ierr); 131747c6ae99SBarry Smith #endif 131847c6ae99SBarry Smith ierr = PetscObjectGetComm((PetscObject)da,&comm);CHKERRQ(ierr); 131947c6ae99SBarry Smith 132047c6ae99SBarry Smith if (dim != PETSC_DECIDE && dim != 2) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Dimension should be 2: %D",dim); 132147c6ae99SBarry Smith if (dof < 1) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have 1 or more degrees of freedom per node: %D",dof); 132247c6ae99SBarry Smith if (s < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Stencil width cannot be negative: %D",s); 132347c6ae99SBarry Smith 132447c6ae99SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 132547c6ae99SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 132647c6ae99SBarry Smith 1327*5dff015aSBarry Smith da->ops->getelements = DMGetElements_DM_2d_P1; 132847c6ae99SBarry Smith 132947c6ae99SBarry Smith dd->dim = 2; 133047c6ae99SBarry Smith dd->elementtype = DA_ELEMENT_P1; 133147c6ae99SBarry Smith ierr = PetscMalloc(dof*sizeof(char*),&dd->fieldname);CHKERRQ(ierr); 133247c6ae99SBarry Smith ierr = PetscMemzero(dd->fieldname,dof*sizeof(char*));CHKERRQ(ierr); 133347c6ae99SBarry Smith 133447c6ae99SBarry Smith if (m != PETSC_DECIDE) { 133547c6ae99SBarry Smith if (m < 1) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Non-positive number of processors in X direction: %D",m); 133647c6ae99SBarry Smith else if (m > size) SETERRQ2(comm,PETSC_ERR_ARG_OUTOFRANGE,"Too many processors in X direction: %D %d",m,size); 133747c6ae99SBarry Smith } 133847c6ae99SBarry Smith if (n != PETSC_DECIDE) { 133947c6ae99SBarry Smith if (n < 1) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Non-positive number of processors in Y direction: %D",n); 134047c6ae99SBarry Smith else if (n > size) SETERRQ2(comm,PETSC_ERR_ARG_OUTOFRANGE,"Too many processors in Y direction: %D %d",n,size); 134147c6ae99SBarry Smith } 134247c6ae99SBarry Smith 134347c6ae99SBarry Smith if (m == PETSC_DECIDE || n == PETSC_DECIDE) { 134447c6ae99SBarry Smith if (n != PETSC_DECIDE) { 134547c6ae99SBarry Smith m = size/n; 134647c6ae99SBarry Smith } else if (m != PETSC_DECIDE) { 134747c6ae99SBarry Smith n = size/m; 134847c6ae99SBarry Smith } else { 134947c6ae99SBarry Smith /* try for squarish distribution */ 135047c6ae99SBarry Smith m = (PetscInt)(0.5 + sqrt(((double)M)*((double)size)/((double)N))); 135147c6ae99SBarry Smith if (!m) m = 1; 135247c6ae99SBarry Smith while (m > 0) { 135347c6ae99SBarry Smith n = size/m; 135447c6ae99SBarry Smith if (m*n == size) break; 135547c6ae99SBarry Smith m--; 135647c6ae99SBarry Smith } 135747c6ae99SBarry Smith if (M > N && m < n) {PetscInt _m = m; m = n; n = _m;} 135847c6ae99SBarry Smith } 135947c6ae99SBarry Smith if (m*n != size) SETERRQ(comm,PETSC_ERR_PLIB,"Unable to create partition, check the size of the communicator and input m and n "); 136047c6ae99SBarry Smith } else if (m*n != size) SETERRQ(comm,PETSC_ERR_ARG_OUTOFRANGE,"Given Bad partition"); 136147c6ae99SBarry Smith 136247c6ae99SBarry Smith if (M < m) SETERRQ2(comm,PETSC_ERR_ARG_OUTOFRANGE,"Partition in x direction is too fine! %D %D",M,m); 136347c6ae99SBarry Smith if (N < n) SETERRQ2(comm,PETSC_ERR_ARG_OUTOFRANGE,"Partition in y direction is too fine! %D %D",N,n); 136447c6ae99SBarry Smith 136547c6ae99SBarry Smith /* 136647c6ae99SBarry Smith Determine locally owned region 136747c6ae99SBarry Smith xs is the first local node number, x is the number of local nodes 136847c6ae99SBarry Smith */ 136947c6ae99SBarry Smith if (!lx) { 137047c6ae99SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt), &dd->lx);CHKERRQ(ierr); 137147c6ae99SBarry Smith lx = dd->lx; 137247c6ae99SBarry Smith for (i=0; i<m; i++) { 137347c6ae99SBarry Smith lx[i] = M/m + ((M % m) > i); 137447c6ae99SBarry Smith } 137547c6ae99SBarry Smith } 137647c6ae99SBarry Smith x = lx[rank % m]; 137747c6ae99SBarry Smith xs = 0; 137847c6ae99SBarry Smith for (i=0; i<(rank % m); i++) { 137947c6ae99SBarry Smith xs += lx[i]; 138047c6ae99SBarry Smith } 138147c6ae99SBarry Smith #if defined(PETSC_USE_DEBUG) 138247c6ae99SBarry Smith left = xs; 138347c6ae99SBarry Smith for (i=(rank % m); i<m; i++) { 138447c6ae99SBarry Smith left += lx[i]; 138547c6ae99SBarry Smith } 138647c6ae99SBarry Smith if (left != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Sum of lx across processors not equal to M: %D %D",left,M); 138747c6ae99SBarry Smith #endif 138847c6ae99SBarry Smith 138947c6ae99SBarry Smith /* 139047c6ae99SBarry Smith Determine locally owned region 139147c6ae99SBarry Smith ys is the first local node number, y is the number of local nodes 139247c6ae99SBarry Smith */ 139347c6ae99SBarry Smith if (!ly) { 139447c6ae99SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt), &dd->ly);CHKERRQ(ierr); 139547c6ae99SBarry Smith ly = dd->ly; 139647c6ae99SBarry Smith for (i=0; i<n; i++) { 139747c6ae99SBarry Smith ly[i] = N/n + ((N % n) > i); 139847c6ae99SBarry Smith } 139947c6ae99SBarry Smith } 140047c6ae99SBarry Smith y = ly[rank/m]; 140147c6ae99SBarry Smith ys = 0; 140247c6ae99SBarry Smith for (i=0; i<(rank/m); i++) { 140347c6ae99SBarry Smith ys += ly[i]; 140447c6ae99SBarry Smith } 140547c6ae99SBarry Smith #if defined(PETSC_USE_DEBUG) 140647c6ae99SBarry Smith left = ys; 140747c6ae99SBarry Smith for (i=(rank/m); i<n; i++) { 140847c6ae99SBarry Smith left += ly[i]; 140947c6ae99SBarry Smith } 141047c6ae99SBarry Smith if (left != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Sum of ly across processors not equal to N: %D %D",left,N); 141147c6ae99SBarry Smith #endif 141247c6ae99SBarry Smith 141347c6ae99SBarry Smith if (x < s) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local x-width of domain x %D is smaller than stencil width s %D",x,s); 141447c6ae99SBarry Smith if (y < s) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local y-width of domain y %D is smaller than stencil width s %D",y,s); 141547c6ae99SBarry Smith xe = xs + x; 141647c6ae99SBarry Smith ye = ys + y; 141747c6ae99SBarry Smith 141847c6ae99SBarry Smith /* determine ghost region */ 141947c6ae99SBarry Smith /* Assume No Periodicity */ 142047c6ae99SBarry Smith if (xs-s > 0) Xs = xs - s; else Xs = 0; 142147c6ae99SBarry Smith if (ys-s > 0) Ys = ys - s; else Ys = 0; 142247c6ae99SBarry Smith if (xe+s <= M) Xe = xe + s; else Xe = M; 142347c6ae99SBarry Smith if (ye+s <= N) Ye = ye + s; else Ye = N; 142447c6ae99SBarry Smith 142547c6ae99SBarry Smith /* X Periodic */ 142647c6ae99SBarry Smith if (DAXPeriodic(wrap)){ 142747c6ae99SBarry Smith Xs = xs - s; 142847c6ae99SBarry Smith Xe = xe + s; 142947c6ae99SBarry Smith } 143047c6ae99SBarry Smith 143147c6ae99SBarry Smith /* Y Periodic */ 143247c6ae99SBarry Smith if (DAYPeriodic(wrap)){ 143347c6ae99SBarry Smith Ys = ys - s; 143447c6ae99SBarry Smith Ye = ye + s; 143547c6ae99SBarry Smith } 143647c6ae99SBarry Smith 143747c6ae99SBarry Smith /* Resize all X parameters to reflect w */ 143847c6ae99SBarry Smith x *= dof; 143947c6ae99SBarry Smith xs *= dof; 144047c6ae99SBarry Smith xe *= dof; 144147c6ae99SBarry Smith Xs *= dof; 144247c6ae99SBarry Smith Xe *= dof; 144347c6ae99SBarry Smith s_x = s*dof; 144447c6ae99SBarry Smith s_y = s; 144547c6ae99SBarry Smith 144647c6ae99SBarry Smith /* determine starting point of each processor */ 144747c6ae99SBarry Smith nn = x*y; 144847c6ae99SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&bases,size,PetscInt,&ldims);CHKERRQ(ierr); 144947c6ae99SBarry Smith ierr = MPI_Allgather(&nn,1,MPIU_INT,ldims,1,MPIU_INT,comm);CHKERRQ(ierr); 145047c6ae99SBarry Smith bases[0] = 0; 145147c6ae99SBarry Smith for (i=1; i<=size; i++) { 145247c6ae99SBarry Smith bases[i] = ldims[i-1]; 145347c6ae99SBarry Smith } 145447c6ae99SBarry Smith for (i=1; i<=size; i++) { 145547c6ae99SBarry Smith bases[i] += bases[i-1]; 145647c6ae99SBarry Smith } 145747c6ae99SBarry Smith 145847c6ae99SBarry Smith /* allocate the base parallel and sequential vectors */ 145947c6ae99SBarry Smith dd->Nlocal = x*y; 146047c6ae99SBarry Smith ierr = VecCreateMPIWithArray(comm,dd->Nlocal,PETSC_DECIDE,0,&global);CHKERRQ(ierr); 146147c6ae99SBarry Smith ierr = VecSetBlockSize(global,dof);CHKERRQ(ierr); 146247c6ae99SBarry Smith dd->nlocal = (Xe-Xs)*(Ye-Ys); 146347c6ae99SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,dd->nlocal,0,&local);CHKERRQ(ierr); 146447c6ae99SBarry Smith ierr = VecSetBlockSize(local,dof);CHKERRQ(ierr); 146547c6ae99SBarry Smith 146647c6ae99SBarry Smith 146747c6ae99SBarry Smith /* generate appropriate vector scatters */ 146847c6ae99SBarry Smith /* local to global inserts non-ghost point region into global */ 146947c6ae99SBarry Smith ierr = VecGetOwnershipRange(global,&start,&end);CHKERRQ(ierr); 147047c6ae99SBarry Smith ierr = ISCreateStride(comm,x*y,start,1,&to);CHKERRQ(ierr); 147147c6ae99SBarry Smith 147247c6ae99SBarry Smith left = xs - Xs; down = ys - Ys; up = down + y; 147347c6ae99SBarry Smith ierr = PetscMalloc(x*(up - down)*sizeof(PetscInt),&idx);CHKERRQ(ierr); 147447c6ae99SBarry Smith count = 0; 147547c6ae99SBarry Smith for (i=down; i<up; i++) { 147647c6ae99SBarry Smith for (j=0; j<x/dof; j++) { 147747c6ae99SBarry Smith idx[count++] = (left + i*(Xe-Xs) + j*dof)/dof; 147847c6ae99SBarry Smith } 147947c6ae99SBarry Smith } 148047c6ae99SBarry Smith ierr = ISCreateBlock(comm,dof,count,idx,PETSC_OWN_POINTER,&from);CHKERRQ(ierr); 148147c6ae99SBarry Smith 148247c6ae99SBarry Smith ierr = VecScatterCreate(local,from,global,to,<og);CHKERRQ(ierr); 148347c6ae99SBarry Smith ierr = PetscLogObjectParent(dd,ltog);CHKERRQ(ierr); 148447c6ae99SBarry Smith ierr = ISDestroy(from);CHKERRQ(ierr); 148547c6ae99SBarry Smith ierr = ISDestroy(to);CHKERRQ(ierr); 148647c6ae99SBarry Smith 148747c6ae99SBarry Smith /* global to local must include ghost points */ 148847c6ae99SBarry Smith if (stencil_type == DA_STENCIL_BOX) { 148947c6ae99SBarry Smith ierr = ISCreateStride(comm,(Xe-Xs)*(Ye-Ys),0,1,&to);CHKERRQ(ierr); 149047c6ae99SBarry Smith } else { 149147c6ae99SBarry Smith /* must drop into cross shape region */ 149247c6ae99SBarry Smith /* ---------| 149347c6ae99SBarry Smith | top | 149447c6ae99SBarry Smith |--- ---| 149547c6ae99SBarry Smith | middle | 149647c6ae99SBarry Smith | | 149747c6ae99SBarry Smith ---- ---- 149847c6ae99SBarry Smith | bottom | 149947c6ae99SBarry Smith ----------- 150047c6ae99SBarry Smith Xs xs xe Xe */ 150147c6ae99SBarry Smith /* bottom */ 150247c6ae99SBarry Smith left = xs - Xs; down = ys - Ys; up = down + y; 150347c6ae99SBarry Smith count = down*(xe-xs) + (up-down)*(Xe-Xs) + (Ye-Ys-up)*(xe-xs); 150447c6ae99SBarry Smith ierr = PetscMalloc(count*sizeof(PetscInt)/dof,&idx);CHKERRQ(ierr); 150547c6ae99SBarry Smith count = 0; 150647c6ae99SBarry Smith for (i=0; i<down; i++) { 150747c6ae99SBarry Smith for (j=0; j<xe-xs; j += dof) { 150847c6ae99SBarry Smith idx[count++] = left + i*(Xe-Xs) + j; 150947c6ae99SBarry Smith } 151047c6ae99SBarry Smith } 151147c6ae99SBarry Smith /* middle */ 151247c6ae99SBarry Smith for (i=down; i<up; i++) { 151347c6ae99SBarry Smith for (j=0; j<Xe-Xs; j += dof) { 151447c6ae99SBarry Smith idx[count++] = i*(Xe-Xs) + j; 151547c6ae99SBarry Smith } 151647c6ae99SBarry Smith } 151747c6ae99SBarry Smith /* top */ 151847c6ae99SBarry Smith for (i=up; i<Ye-Ys; i++) { 151947c6ae99SBarry Smith for (j=0; j<xe-xs; j += dof) { 152047c6ae99SBarry Smith idx[count++] = (left + i*(Xe-Xs) + j); 152147c6ae99SBarry Smith } 152247c6ae99SBarry Smith } 152347c6ae99SBarry Smith for (i=0; i<count; i++) idx[i] = idx[i]/dof; 152447c6ae99SBarry Smith ierr = ISCreateBlock(comm,dof,count,idx,PETSC_OWN_POINTER,&to);CHKERRQ(ierr); 152547c6ae99SBarry Smith } 152647c6ae99SBarry Smith 152747c6ae99SBarry Smith 152847c6ae99SBarry Smith /* determine who lies on each side of us stored in n6 n7 n8 152947c6ae99SBarry Smith n3 n5 153047c6ae99SBarry Smith n0 n1 n2 153147c6ae99SBarry Smith */ 153247c6ae99SBarry Smith 153347c6ae99SBarry Smith /* Assume the Non-Periodic Case */ 153447c6ae99SBarry Smith n1 = rank - m; 153547c6ae99SBarry Smith if (rank % m) { 153647c6ae99SBarry Smith n0 = n1 - 1; 153747c6ae99SBarry Smith } else { 153847c6ae99SBarry Smith n0 = -1; 153947c6ae99SBarry Smith } 154047c6ae99SBarry Smith if ((rank+1) % m) { 154147c6ae99SBarry Smith n2 = n1 + 1; 154247c6ae99SBarry Smith n5 = rank + 1; 154347c6ae99SBarry Smith n8 = rank + m + 1; if (n8 >= m*n) n8 = -1; 154447c6ae99SBarry Smith } else { 154547c6ae99SBarry Smith n2 = -1; n5 = -1; n8 = -1; 154647c6ae99SBarry Smith } 154747c6ae99SBarry Smith if (rank % m) { 154847c6ae99SBarry Smith n3 = rank - 1; 154947c6ae99SBarry Smith n6 = n3 + m; if (n6 >= m*n) n6 = -1; 155047c6ae99SBarry Smith } else { 155147c6ae99SBarry Smith n3 = -1; n6 = -1; 155247c6ae99SBarry Smith } 155347c6ae99SBarry Smith n7 = rank + m; if (n7 >= m*n) n7 = -1; 155447c6ae99SBarry Smith 155547c6ae99SBarry Smith 155647c6ae99SBarry Smith /* Modify for Periodic Cases */ 155747c6ae99SBarry Smith if (wrap == DA_YPERIODIC) { /* Handle Top and Bottom Sides */ 155847c6ae99SBarry Smith if (n1 < 0) n1 = rank + m * (n-1); 155947c6ae99SBarry Smith if (n7 < 0) n7 = rank - m * (n-1); 156047c6ae99SBarry Smith if ((n3 >= 0) && (n0 < 0)) n0 = size - m + rank - 1; 156147c6ae99SBarry Smith if ((n3 >= 0) && (n6 < 0)) n6 = (rank%m)-1; 156247c6ae99SBarry Smith if ((n5 >= 0) && (n2 < 0)) n2 = size - m + rank + 1; 156347c6ae99SBarry Smith if ((n5 >= 0) && (n8 < 0)) n8 = (rank%m)+1; 156447c6ae99SBarry Smith } else if (wrap == DA_XPERIODIC) { /* Handle Left and Right Sides */ 156547c6ae99SBarry Smith if (n3 < 0) n3 = rank + (m-1); 156647c6ae99SBarry Smith if (n5 < 0) n5 = rank - (m-1); 156747c6ae99SBarry Smith if ((n1 >= 0) && (n0 < 0)) n0 = rank-1; 156847c6ae99SBarry Smith if ((n1 >= 0) && (n2 < 0)) n2 = rank-2*m+1; 156947c6ae99SBarry Smith if ((n7 >= 0) && (n6 < 0)) n6 = rank+2*m-1; 157047c6ae99SBarry Smith if ((n7 >= 0) && (n8 < 0)) n8 = rank+1; 157147c6ae99SBarry Smith } else if (wrap == DA_XYPERIODIC) { 157247c6ae99SBarry Smith 157347c6ae99SBarry Smith /* Handle all four corners */ 157447c6ae99SBarry Smith if ((n6 < 0) && (n7 < 0) && (n3 < 0)) n6 = m-1; 157547c6ae99SBarry Smith if ((n8 < 0) && (n7 < 0) && (n5 < 0)) n8 = 0; 157647c6ae99SBarry Smith if ((n2 < 0) && (n5 < 0) && (n1 < 0)) n2 = size-m; 157747c6ae99SBarry Smith if ((n0 < 0) && (n3 < 0) && (n1 < 0)) n0 = size-1; 157847c6ae99SBarry Smith 157947c6ae99SBarry Smith /* Handle Top and Bottom Sides */ 158047c6ae99SBarry Smith if (n1 < 0) n1 = rank + m * (n-1); 158147c6ae99SBarry Smith if (n7 < 0) n7 = rank - m * (n-1); 158247c6ae99SBarry Smith if ((n3 >= 0) && (n0 < 0)) n0 = size - m + rank - 1; 158347c6ae99SBarry Smith if ((n3 >= 0) && (n6 < 0)) n6 = (rank%m)-1; 158447c6ae99SBarry Smith if ((n5 >= 0) && (n2 < 0)) n2 = size - m + rank + 1; 158547c6ae99SBarry Smith if ((n5 >= 0) && (n8 < 0)) n8 = (rank%m)+1; 158647c6ae99SBarry Smith 158747c6ae99SBarry Smith /* Handle Left and Right Sides */ 158847c6ae99SBarry Smith if (n3 < 0) n3 = rank + (m-1); 158947c6ae99SBarry Smith if (n5 < 0) n5 = rank - (m-1); 159047c6ae99SBarry Smith if ((n1 >= 0) && (n0 < 0)) n0 = rank-1; 159147c6ae99SBarry Smith if ((n1 >= 0) && (n2 < 0)) n2 = rank-2*m+1; 159247c6ae99SBarry Smith if ((n7 >= 0) && (n6 < 0)) n6 = rank+2*m-1; 159347c6ae99SBarry Smith if ((n7 >= 0) && (n8 < 0)) n8 = rank+1; 159447c6ae99SBarry Smith } 159547c6ae99SBarry Smith ierr = PetscMalloc(9*sizeof(PetscInt),&dd->neighbors);CHKERRQ(ierr); 159647c6ae99SBarry Smith dd->neighbors[0] = n0; 159747c6ae99SBarry Smith dd->neighbors[1] = n1; 159847c6ae99SBarry Smith dd->neighbors[2] = n2; 159947c6ae99SBarry Smith dd->neighbors[3] = n3; 160047c6ae99SBarry Smith dd->neighbors[4] = rank; 160147c6ae99SBarry Smith dd->neighbors[5] = n5; 160247c6ae99SBarry Smith dd->neighbors[6] = n6; 160347c6ae99SBarry Smith dd->neighbors[7] = n7; 160447c6ae99SBarry Smith dd->neighbors[8] = n8; 160547c6ae99SBarry Smith 160647c6ae99SBarry Smith if (stencil_type == DA_STENCIL_STAR) { 160747c6ae99SBarry Smith /* save corner processor numbers */ 160847c6ae99SBarry Smith sn0 = n0; sn2 = n2; sn6 = n6; sn8 = n8; 160947c6ae99SBarry Smith n0 = n2 = n6 = n8 = -1; 161047c6ae99SBarry Smith } 161147c6ae99SBarry Smith 161247c6ae99SBarry Smith ierr = PetscMalloc((x+2*s_x)*(y+2*s_y)*sizeof(PetscInt),&idx);CHKERRQ(ierr); 161347c6ae99SBarry Smith ierr = PetscLogObjectMemory(da,(x+2*s_x)*(y+2*s_y)*sizeof(PetscInt));CHKERRQ(ierr); 161447c6ae99SBarry Smith nn = 0; 161547c6ae99SBarry Smith 161647c6ae99SBarry Smith xbase = bases[rank]; 161747c6ae99SBarry Smith for (i=1; i<=s_y; i++) { 161847c6ae99SBarry Smith if (n0 >= 0) { /* left below */ 161947c6ae99SBarry Smith x_t = lx[n0 % m]*dof; 162047c6ae99SBarry Smith y_t = ly[(n0/m)]; 162147c6ae99SBarry Smith s_t = bases[n0] + x_t*y_t - (s_y-i)*x_t - s_x; 162247c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 162347c6ae99SBarry Smith } 162447c6ae99SBarry Smith if (n1 >= 0) { /* directly below */ 162547c6ae99SBarry Smith x_t = x; 162647c6ae99SBarry Smith y_t = ly[(n1/m)]; 162747c6ae99SBarry Smith s_t = bases[n1] + x_t*y_t - (s_y+1-i)*x_t; 162847c6ae99SBarry Smith for (j=0; j<x_t; j++) { idx[nn++] = s_t++;} 162947c6ae99SBarry Smith } 163047c6ae99SBarry Smith if (n2 >= 0) { /* right below */ 163147c6ae99SBarry Smith x_t = lx[n2 % m]*dof; 163247c6ae99SBarry Smith y_t = ly[(n2/m)]; 163347c6ae99SBarry Smith s_t = bases[n2] + x_t*y_t - (s_y+1-i)*x_t; 163447c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 163547c6ae99SBarry Smith } 163647c6ae99SBarry Smith } 163747c6ae99SBarry Smith 163847c6ae99SBarry Smith for (i=0; i<y; i++) { 163947c6ae99SBarry Smith if (n3 >= 0) { /* directly left */ 164047c6ae99SBarry Smith x_t = lx[n3 % m]*dof; 164147c6ae99SBarry Smith /* y_t = y; */ 164247c6ae99SBarry Smith s_t = bases[n3] + (i+1)*x_t - s_x; 164347c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 164447c6ae99SBarry Smith } 164547c6ae99SBarry Smith 164647c6ae99SBarry Smith for (j=0; j<x; j++) { idx[nn++] = xbase++; } /* interior */ 164747c6ae99SBarry Smith 164847c6ae99SBarry Smith if (n5 >= 0) { /* directly right */ 164947c6ae99SBarry Smith x_t = lx[n5 % m]*dof; 165047c6ae99SBarry Smith /* y_t = y; */ 165147c6ae99SBarry Smith s_t = bases[n5] + (i)*x_t; 165247c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 165347c6ae99SBarry Smith } 165447c6ae99SBarry Smith } 165547c6ae99SBarry Smith 165647c6ae99SBarry Smith for (i=1; i<=s_y; i++) { 165747c6ae99SBarry Smith if (n6 >= 0) { /* left above */ 165847c6ae99SBarry Smith x_t = lx[n6 % m]*dof; 165947c6ae99SBarry Smith /* y_t = ly[(n6/m)]; */ 166047c6ae99SBarry Smith s_t = bases[n6] + (i)*x_t - s_x; 166147c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 166247c6ae99SBarry Smith } 166347c6ae99SBarry Smith if (n7 >= 0) { /* directly above */ 166447c6ae99SBarry Smith x_t = x; 166547c6ae99SBarry Smith /* y_t = ly[(n7/m)]; */ 166647c6ae99SBarry Smith s_t = bases[n7] + (i-1)*x_t; 166747c6ae99SBarry Smith for (j=0; j<x_t; j++) { idx[nn++] = s_t++;} 166847c6ae99SBarry Smith } 166947c6ae99SBarry Smith if (n8 >= 0) { /* right above */ 167047c6ae99SBarry Smith x_t = lx[n8 % m]*dof; 167147c6ae99SBarry Smith /* y_t = ly[(n8/m)]; */ 167247c6ae99SBarry Smith s_t = bases[n8] + (i-1)*x_t; 167347c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 167447c6ae99SBarry Smith } 167547c6ae99SBarry Smith } 167647c6ae99SBarry Smith 167747c6ae99SBarry Smith base = bases[rank]; 167847c6ae99SBarry Smith { 167947c6ae99SBarry Smith PetscInt nnn = nn/dof,*iidx; 168047c6ae99SBarry Smith ierr = PetscMalloc(nnn*sizeof(PetscInt),&iidx);CHKERRQ(ierr); 168147c6ae99SBarry Smith for (i=0; i<nnn; i++) { 168247c6ae99SBarry Smith iidx[i] = idx[dof*i]/dof; 168347c6ae99SBarry Smith } 168447c6ae99SBarry Smith ierr = ISCreateBlock(comm,dof,nnn,iidx,PETSC_OWN_POINTER,&from);CHKERRQ(ierr); 168547c6ae99SBarry Smith } 168647c6ae99SBarry Smith ierr = VecScatterCreate(global,from,local,to,>ol);CHKERRQ(ierr); 168747c6ae99SBarry Smith ierr = PetscLogObjectParent(da,gtol);CHKERRQ(ierr); 168847c6ae99SBarry Smith ierr = ISDestroy(to);CHKERRQ(ierr); 168947c6ae99SBarry Smith ierr = ISDestroy(from);CHKERRQ(ierr); 169047c6ae99SBarry Smith 169147c6ae99SBarry Smith if (stencil_type == DA_STENCIL_STAR) { 169247c6ae99SBarry Smith /* 169347c6ae99SBarry Smith Recompute the local to global mappings, this time keeping the 169447c6ae99SBarry Smith information about the cross corner processor numbers. 169547c6ae99SBarry Smith */ 169647c6ae99SBarry Smith n0 = sn0; n2 = sn2; n6 = sn6; n8 = sn8; 169747c6ae99SBarry Smith nn = 0; 169847c6ae99SBarry Smith xbase = bases[rank]; 169947c6ae99SBarry Smith for (i=1; i<=s_y; i++) { 170047c6ae99SBarry Smith if (n0 >= 0) { /* left below */ 170147c6ae99SBarry Smith x_t = lx[n0 % m]*dof; 170247c6ae99SBarry Smith y_t = ly[(n0/m)]; 170347c6ae99SBarry Smith s_t = bases[n0] + x_t*y_t - (s_y-i)*x_t - s_x; 170447c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 170547c6ae99SBarry Smith } 170647c6ae99SBarry Smith if (n1 >= 0) { /* directly below */ 170747c6ae99SBarry Smith x_t = x; 170847c6ae99SBarry Smith y_t = ly[(n1/m)]; 170947c6ae99SBarry Smith s_t = bases[n1] + x_t*y_t - (s_y+1-i)*x_t; 171047c6ae99SBarry Smith for (j=0; j<x_t; j++) { idx[nn++] = s_t++;} 171147c6ae99SBarry Smith } 171247c6ae99SBarry Smith if (n2 >= 0) { /* right below */ 171347c6ae99SBarry Smith x_t = lx[n2 % m]*dof; 171447c6ae99SBarry Smith y_t = ly[(n2/m)]; 171547c6ae99SBarry Smith s_t = bases[n2] + x_t*y_t - (s_y+1-i)*x_t; 171647c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 171747c6ae99SBarry Smith } 171847c6ae99SBarry Smith } 171947c6ae99SBarry Smith 172047c6ae99SBarry Smith for (i=0; i<y; i++) { 172147c6ae99SBarry Smith if (n3 >= 0) { /* directly left */ 172247c6ae99SBarry Smith x_t = lx[n3 % m]*dof; 172347c6ae99SBarry Smith /* y_t = y; */ 172447c6ae99SBarry Smith s_t = bases[n3] + (i+1)*x_t - s_x; 172547c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 172647c6ae99SBarry Smith } 172747c6ae99SBarry Smith 172847c6ae99SBarry Smith for (j=0; j<x; j++) { idx[nn++] = xbase++; } /* interior */ 172947c6ae99SBarry Smith 173047c6ae99SBarry Smith if (n5 >= 0) { /* directly right */ 173147c6ae99SBarry Smith x_t = lx[n5 % m]*dof; 173247c6ae99SBarry Smith /* y_t = y; */ 173347c6ae99SBarry Smith s_t = bases[n5] + (i)*x_t; 173447c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 173547c6ae99SBarry Smith } 173647c6ae99SBarry Smith } 173747c6ae99SBarry Smith 173847c6ae99SBarry Smith for (i=1; i<=s_y; i++) { 173947c6ae99SBarry Smith if (n6 >= 0) { /* left above */ 174047c6ae99SBarry Smith x_t = lx[n6 % m]*dof; 174147c6ae99SBarry Smith /* y_t = ly[(n6/m)]; */ 174247c6ae99SBarry Smith s_t = bases[n6] + (i)*x_t - s_x; 174347c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 174447c6ae99SBarry Smith } 174547c6ae99SBarry Smith if (n7 >= 0) { /* directly above */ 174647c6ae99SBarry Smith x_t = x; 174747c6ae99SBarry Smith /* y_t = ly[(n7/m)]; */ 174847c6ae99SBarry Smith s_t = bases[n7] + (i-1)*x_t; 174947c6ae99SBarry Smith for (j=0; j<x_t; j++) { idx[nn++] = s_t++;} 175047c6ae99SBarry Smith } 175147c6ae99SBarry Smith if (n8 >= 0) { /* right above */ 175247c6ae99SBarry Smith x_t = lx[n8 % m]*dof; 175347c6ae99SBarry Smith /* y_t = ly[(n8/m)]; */ 175447c6ae99SBarry Smith s_t = bases[n8] + (i-1)*x_t; 175547c6ae99SBarry Smith for (j=0; j<s_x; j++) { idx[nn++] = s_t++;} 175647c6ae99SBarry Smith } 175747c6ae99SBarry Smith } 175847c6ae99SBarry Smith } 175947c6ae99SBarry Smith ierr = PetscFree2(bases,ldims);CHKERRQ(ierr); 176047c6ae99SBarry Smith 176147c6ae99SBarry Smith dd->m = m; dd->n = n; 176247c6ae99SBarry Smith dd->xs = xs; dd->xe = xe; dd->ys = ys; dd->ye = ye; dd->zs = 0; dd->ze = 1; 176347c6ae99SBarry Smith dd->Xs = Xs; dd->Xe = Xe; dd->Ys = Ys; dd->Ye = Ye; dd->Zs = 0; dd->Ze = 1; 176447c6ae99SBarry Smith 176547c6ae99SBarry Smith ierr = VecDestroy(local);CHKERRQ(ierr); 176647c6ae99SBarry Smith ierr = VecDestroy(global);CHKERRQ(ierr); 176747c6ae99SBarry Smith 176847c6ae99SBarry Smith dd->gtol = gtol; 176947c6ae99SBarry Smith dd->ltog = ltog; 177047c6ae99SBarry Smith dd->idx = idx; 177147c6ae99SBarry Smith dd->Nl = nn; 177247c6ae99SBarry Smith dd->base = base; 177347c6ae99SBarry Smith da->ops->view = DAView_2d; 177447c6ae99SBarry Smith 177547c6ae99SBarry Smith /* 177647c6ae99SBarry Smith Set the local to global ordering in the global vector, this allows use 177747c6ae99SBarry Smith of VecSetValuesLocal(). 177847c6ae99SBarry Smith */ 177947c6ae99SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,nn,idx,PETSC_OWN_POINTER,&dd->ltogmap);CHKERRQ(ierr); 178047c6ae99SBarry Smith ierr = ISLocalToGlobalMappingBlock(dd->ltogmap,dd->w,&dd->ltogmapb);CHKERRQ(ierr); 178147c6ae99SBarry Smith ierr = PetscLogObjectParent(da,dd->ltogmap);CHKERRQ(ierr); 178247c6ae99SBarry Smith 178347c6ae99SBarry Smith dd->ltol = PETSC_NULL; 178447c6ae99SBarry Smith dd->ao = PETSC_NULL; 178547c6ae99SBarry Smith 178647c6ae99SBarry Smith PetscFunctionReturn(0); 178747c6ae99SBarry Smith } 178847c6ae99SBarry Smith EXTERN_C_END 178947c6ae99SBarry Smith 179047c6ae99SBarry Smith #undef __FUNCT__ 179147c6ae99SBarry Smith #define __FUNCT__ "DACreate2d" 179247c6ae99SBarry Smith /*@C 179347c6ae99SBarry Smith DACreate2d - Creates an object that will manage the communication of two-dimensional 179447c6ae99SBarry Smith regular array data that is distributed across some processors. 179547c6ae99SBarry Smith 179647c6ae99SBarry Smith Collective on MPI_Comm 179747c6ae99SBarry Smith 179847c6ae99SBarry Smith Input Parameters: 179947c6ae99SBarry Smith + comm - MPI communicator 180047c6ae99SBarry Smith . wrap - type of periodicity should the array have. 180147c6ae99SBarry Smith Use one of DA_NONPERIODIC, DA_XPERIODIC, DA_YPERIODIC, or DA_XYPERIODIC. 180247c6ae99SBarry Smith . stencil_type - stencil type. Use either DA_STENCIL_BOX or DA_STENCIL_STAR. 180347c6ae99SBarry Smith . M,N - global dimension in each direction of the array (use -M and or -N to indicate that it may be set to a different value 180447c6ae99SBarry Smith from the command line with -da_grid_x <M> -da_grid_y <N>) 180547c6ae99SBarry Smith . m,n - corresponding number of processors in each dimension 180647c6ae99SBarry Smith (or PETSC_DECIDE to have calculated) 180747c6ae99SBarry Smith . dof - number of degrees of freedom per node 180847c6ae99SBarry Smith . s - stencil width 180947c6ae99SBarry Smith - lx, ly - arrays containing the number of nodes in each cell along 181047c6ae99SBarry Smith the x and y coordinates, or PETSC_NULL. If non-null, these 181147c6ae99SBarry Smith must be of length as m and n, and the corresponding 181247c6ae99SBarry Smith m and n cannot be PETSC_DECIDE. The sum of the lx[] entries 181347c6ae99SBarry Smith must be M, and the sum of the ly[] entries must be N. 181447c6ae99SBarry Smith 181547c6ae99SBarry Smith Output Parameter: 181647c6ae99SBarry Smith . da - the resulting distributed array object 181747c6ae99SBarry Smith 181847c6ae99SBarry Smith Options Database Key: 181947c6ae99SBarry Smith + -da_view - Calls DAView() at the conclusion of DACreate2d() 182047c6ae99SBarry Smith . -da_grid_x <nx> - number of grid points in x direction, if M < 0 182147c6ae99SBarry Smith . -da_grid_y <ny> - number of grid points in y direction, if N < 0 182247c6ae99SBarry Smith . -da_processors_x <nx> - number of processors in x direction 182347c6ae99SBarry Smith . -da_processors_y <ny> - number of processors in y direction 182447c6ae99SBarry Smith . -da_refine_x - refinement ratio in x direction 182547c6ae99SBarry Smith - -da_refine_y - refinement ratio in y direction 182647c6ae99SBarry Smith 182747c6ae99SBarry Smith Level: beginner 182847c6ae99SBarry Smith 182947c6ae99SBarry Smith Notes: 183047c6ae99SBarry Smith The stencil type DA_STENCIL_STAR with width 1 corresponds to the 183147c6ae99SBarry Smith standard 5-pt stencil, while DA_STENCIL_BOX with width 1 denotes 183247c6ae99SBarry Smith the standard 9-pt stencil. 183347c6ae99SBarry Smith 183447c6ae99SBarry Smith The array data itself is NOT stored in the DA, it is stored in Vec objects; 183547c6ae99SBarry Smith The appropriate vector objects can be obtained with calls to DACreateGlobalVector() 183647c6ae99SBarry Smith and DACreateLocalVector() and calls to VecDuplicate() if more are needed. 183747c6ae99SBarry Smith 183847c6ae99SBarry Smith .keywords: distributed array, create, two-dimensional 183947c6ae99SBarry Smith 184047c6ae99SBarry Smith .seealso: DADestroy(), DAView(), DACreate1d(), DACreate3d(), DAGlobalToLocalBegin(), DAGetRefinementFactor(), 184147c6ae99SBarry Smith DAGlobalToLocalEnd(), DALocalToGlobal(), DALocalToLocalBegin(), DALocalToLocalEnd(), DASetRefinementFactor(), 184247c6ae99SBarry Smith DAGetInfo(), DACreateGlobalVector(), DACreateLocalVector(), DACreateNaturalVector(), DALoad(), DAView(), DAGetOwnershipRanges() 184347c6ae99SBarry Smith 184447c6ae99SBarry Smith @*/ 184547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DACreate2d(MPI_Comm comm,DAPeriodicType wrap,DAStencilType stencil_type, 184647c6ae99SBarry Smith PetscInt M,PetscInt N,PetscInt m,PetscInt n,PetscInt dof,PetscInt s,const PetscInt lx[],const PetscInt ly[],DA *da) 184747c6ae99SBarry Smith { 184847c6ae99SBarry Smith PetscErrorCode ierr; 184947c6ae99SBarry Smith 185047c6ae99SBarry Smith PetscFunctionBegin; 185147c6ae99SBarry Smith ierr = DACreate(comm, da);CHKERRQ(ierr); 185247c6ae99SBarry Smith ierr = DASetDim(*da, 2);CHKERRQ(ierr); 185347c6ae99SBarry Smith ierr = DASetSizes(*da, M, N, 1);CHKERRQ(ierr); 185447c6ae99SBarry Smith ierr = DASetNumProcs(*da, m, n, PETSC_DECIDE);CHKERRQ(ierr); 185547c6ae99SBarry Smith ierr = DASetPeriodicity(*da, wrap);CHKERRQ(ierr); 185647c6ae99SBarry Smith ierr = DASetDof(*da, dof);CHKERRQ(ierr); 185747c6ae99SBarry Smith ierr = DASetStencilType(*da, stencil_type);CHKERRQ(ierr); 185847c6ae99SBarry Smith ierr = DASetStencilWidth(*da, s);CHKERRQ(ierr); 185947c6ae99SBarry Smith ierr = DASetOwnershipRanges(*da, lx, ly, PETSC_NULL);CHKERRQ(ierr); 186047c6ae99SBarry Smith /* This violates the behavior for other classes, but right now users expect negative dimensions to be handled this way */ 186147c6ae99SBarry Smith ierr = DASetFromOptions(*da);CHKERRQ(ierr); 186247c6ae99SBarry Smith ierr = DASetType(*da, DA2D);CHKERRQ(ierr); 186347c6ae99SBarry Smith PetscFunctionReturn(0); 186447c6ae99SBarry Smith } 1865