xref: /petsc/src/dm/impls/da/da3.c (revision 9a42bb27a39f0cdf3306a1e22d33cd9809484eaa)

#define PETSCDM_DLL
/*
   Code for manipulating distributed regular 3d arrays in parallel.
   File created by Peter Mell  7/14/95
 */

#include "private/daimpl.h"     /*I   "petscda.h"    I*/

#undef __FUNCT__
#define __FUNCT__ "DMView_DA_3d"
PetscErrorCode DMView_DA_3d(DM da,PetscViewer viewer)
{
  PetscErrorCode ierr;
  PetscMPIInt    rank;
  PetscBool      iascii,isdraw,isbinary;
  DM_DA          *dd = (DM_DA*)da->data;
#if defined(PETSC_HAVE_MATLAB_ENGINE)
  PetscBool      ismatlab;
#endif

  PetscFunctionBegin;
  ierr = MPI_Comm_rank(((PetscObject)da)->comm,&rank);CHKERRQ(ierr);

  ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
  ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
  ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
#if defined(PETSC_HAVE_MATLAB_ENGINE)
  ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERMATLAB,&ismatlab);CHKERRQ(ierr);
#endif
  if (iascii) {
    PetscViewerFormat format;

    ierr = PetscViewerGetFormat(viewer, &format);CHKERRQ(ierr);
    if (format != PETSC_VIEWER_ASCII_VTK && format != PETSC_VIEWER_ASCII_VTK_CELL) {
      DALocalInfo info;
      ierr = DAGetLocalInfo(da,&info);CHKERRQ(ierr);
      ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Processor [%d] M %D N %D P %D m %D n %D p %D w %D s %D\n",rank,dd->M,dd->N,dd->P,dd->m,dd->n,dd->p,dd->w,dd->s);CHKERRQ(ierr);
      ierr = PetscViewerASCIISynchronizedPrintf(viewer,"X range of indices: %D %D, Y range of indices: %D %D, Z range of indices: %D %D\n",
                                                info.xs,info.xs+info.xm,info.ys,info.ys+info.ym,info.zs,info.zs+info.zm);CHKERRQ(ierr);
#if !defined(PETSC_USE_COMPLEX)
      if (dd->coordinates) {
        PetscInt        last;
        const PetscReal *coors;
        ierr = VecGetArrayRead(dd->coordinates,&coors);CHKERRQ(ierr);
        ierr = VecGetLocalSize(dd->coordinates,&last);CHKERRQ(ierr);
        last = last - 3;
        ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Lower left corner %G %G %G : Upper right %G %G %G\n",coors[0],coors[1],coors[2],coors[last],coors[last+1],coors[last+2]);CHKERRQ(ierr);
        ierr = VecRestoreArrayRead(dd->coordinates,&coors);CHKERRQ(ierr);
      }
#endif
      ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
    }
  } else if (isdraw) {
    PetscDraw       draw;
    PetscReal     ymin = -1.0,ymax = (PetscReal)dd->N;
    PetscReal     xmin = -1.0,xmax = (PetscReal)((dd->M+2)*dd->P),x,y,ycoord,xcoord;
    PetscInt        k,plane,base,*idx;
    char       node[10];
    PetscBool  isnull;

    ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
    ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
    ierr = PetscDrawSetCoordinates(draw,xmin,ymin,xmax,ymax);CHKERRQ(ierr);
    ierr = PetscDrawSynchronizedClear(draw);CHKERRQ(ierr);

    /* first processor draw all node lines */
    if (!rank) {
      for (k=0; k<dd->P; k++) {
        ymin = 0.0; ymax = (PetscReal)(dd->N - 1);
        for (xmin=(PetscReal)(k*(dd->M+1)); xmin<(PetscReal)(dd->M+(k*(dd->M+1))); xmin++) {
          ierr = PetscDrawLine(draw,xmin,ymin,xmin,ymax,PETSC_DRAW_BLACK);CHKERRQ(ierr);
        }

        xmin = (PetscReal)(k*(dd->M+1)); xmax = xmin + (PetscReal)(dd->M - 1);
        for (ymin=0; ymin<(PetscReal)dd->N; ymin++) {
          ierr = PetscDrawLine(draw,xmin,ymin,xmax,ymin,PETSC_DRAW_BLACK);CHKERRQ(ierr);
        }
      }
    }
    ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr);
    ierr = PetscDrawPause(draw);CHKERRQ(ierr);

    for (k=0; k<dd->P; k++) {  /*Go through and draw for each plane*/
      if ((k >= dd->zs) && (k < dd->ze)) {
        /* draw my box */
        ymin = dd->ys;
        ymax = dd->ye - 1;
        xmin = dd->xs/dd->w    + (dd->M+1)*k;
        xmax =(dd->xe-1)/dd->w + (dd->M+1)*k;

        ierr = PetscDrawLine(draw,xmin,ymin,xmax,ymin,PETSC_DRAW_RED);CHKERRQ(ierr);
        ierr = PetscDrawLine(draw,xmin,ymin,xmin,ymax,PETSC_DRAW_RED);CHKERRQ(ierr);
        ierr = PetscDrawLine(draw,xmin,ymax,xmax,ymax,PETSC_DRAW_RED);CHKERRQ(ierr);
        ierr = PetscDrawLine(draw,xmax,ymin,xmax,ymax,PETSC_DRAW_RED);CHKERRQ(ierr);

        xmin = dd->xs/dd->w;
        xmax =(dd->xe-1)/dd->w;

        /* put in numbers*/
        base = (dd->base+(dd->xe-dd->xs)*(dd->ye-dd->ys)*(k-dd->zs))/dd->w;

        /* Identify which processor owns the box */
        sprintf(node,"%d",rank);
        ierr = PetscDrawString(draw,xmin+(dd->M+1)*k+.2,ymin+.3,PETSC_DRAW_RED,node);CHKERRQ(ierr);

        for (y=ymin; y<=ymax; y++) {
          for (x=xmin+(dd->M+1)*k; x<=xmax+(dd->M+1)*k; x++) {
            sprintf(node,"%d",(int)base++);
            ierr = PetscDrawString(draw,x,y,PETSC_DRAW_BLACK,node);CHKERRQ(ierr);
          }
        }

      }
    }
    ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr);
    ierr = PetscDrawPause(draw);CHKERRQ(ierr);

    for (k=0-dd->s; k<dd->P+dd->s; k++) {
      /* Go through and draw for each plane */
      if ((k >= dd->Zs) && (k < dd->Ze)) {

        /* overlay ghost numbers, useful for error checking */
        base = (dd->Xe-dd->Xs)*(dd->Ye-dd->Ys)*(k-dd->Zs); idx = dd->idx;
        plane=k;
        /* Keep z wrap around points on the dradrawg */
        if (k<0)    { plane=dd->P+k; }
        if (k>=dd->P) { plane=k-dd->P; }
        ymin = dd->Ys; ymax = dd->Ye;
        xmin = (dd->M+1)*plane*dd->w;
        xmax = (dd->M+1)*plane*dd->w+dd->M*dd->w;
        for (y=ymin; y<ymax; y++) {
          for (x=xmin+dd->Xs; x<xmin+dd->Xe; x+=dd->w) {
            sprintf(node,"%d",(int)(idx[base]/dd->w));
            ycoord = y;
            /*Keep y wrap around points on drawing */
            if (y<0)      { ycoord = dd->N+y; }

            if (y>=dd->N) { ycoord = y-dd->N; }
            xcoord = x;   /* Keep x wrap points on drawing */

            if (x<xmin)  { xcoord = xmax - (xmin-x); }
            if (x>=xmax) { xcoord = xmin + (x-xmax); }
            ierr = PetscDrawString(draw,xcoord/dd->w,ycoord,PETSC_DRAW_BLUE,node);CHKERRQ(ierr);
            base+=dd->w;
          }
        }
      }
    }
    ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr);
    ierr = PetscDrawPause(draw);CHKERRQ(ierr);
  } else if (isbinary){
    ierr = DMView_DA_Binary(da,viewer);CHKERRQ(ierr);
#if defined(PETSC_HAVE_MATLAB_ENGINE)
  } else if (ismatlab) {
    ierr = DMView_DA_Matlab(da,viewer);CHKERRQ(ierr);
#endif
  } else SETERRQ1(((PetscObject)da)->comm,PETSC_ERR_SUP,"Viewer type %s not supported for DA 1d",((PetscObject)viewer)->type_name);
  PetscFunctionReturn(0);
}

EXTERN_C_BEGIN
#undef __FUNCT__
#define __FUNCT__ "DMSetUp_DA_3D"
PetscErrorCode PETSCDM_DLLEXPORT DMSetUp_DA_3D(DM da)
{
  DM_DA               *dd           = (DM_DA*)da->data;
  const PetscInt       M            = dd->M;
  const PetscInt       N            = dd->N;
  const PetscInt       P            = dd->P;
  PetscInt             m            = dd->m;
  PetscInt             n            = dd->n;
  PetscInt             p            = dd->p;
  const PetscInt       dof          = dd->w;
  const PetscInt       s            = dd->s;
  const DAPeriodicType wrap         = dd->wrap;
  const DAStencilType  stencil_type = dd->stencil_type;
  PetscInt            *lx           = dd->lx;
  PetscInt            *ly           = dd->ly;
  PetscInt            *lz           = dd->lz;
  MPI_Comm             comm;
  PetscMPIInt    rank,size;
  PetscInt       xs = 0,xe,ys = 0,ye,zs = 0,ze,x = 0,y = 0,z = 0,Xs,Xe,Ys,Ye,Zs,Ze,start,end,pm;
  PetscInt       left,up,down,bottom,top,i,j,k,*idx,nn;
  PetscInt       n0,n1,n2,n3,n4,n5,n6,n7,n8,n9,n10,n11,n12,n14;
  PetscInt       n15,n16,n17,n18,n19,n20,n21,n22,n23,n24,n25,n26;
  PetscInt       *bases,*ldims,x_t,y_t,z_t,s_t,base,count,s_x,s_y,s_z;
  PetscInt       sn0 = 0,sn1 = 0,sn2 = 0,sn3 = 0,sn5 = 0,sn6 = 0,sn7 = 0;
  PetscInt       sn8 = 0,sn9 = 0,sn11 = 0,sn15 = 0,sn24 = 0,sn25 = 0,sn26 = 0;
  PetscInt       sn17 = 0,sn18 = 0,sn19 = 0,sn20 = 0,sn21 = 0,sn23 = 0;
  Vec            local,global;
  VecScatter     ltog,gtol;
  IS             to,from;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  if (dof < 1) SETERRQ1(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have 1 or more degrees of freedom per node: %D",dof);
  if (s < 0) SETERRQ1(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Stencil width cannot be negative: %D",s);

  ierr = PetscObjectGetComm((PetscObject) da, &comm);CHKERRQ(ierr);
  ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
  ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);

  dd->dim = 3;
  ierr = PetscMalloc(dof*sizeof(char*),&dd->fieldname);CHKERRQ(ierr);
  ierr = PetscMemzero(dd->fieldname,dof*sizeof(char*));CHKERRQ(ierr);

  if (m != PETSC_DECIDE) {
    if (m < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Non-positive number of processors in X direction: %D",m);
    else if (m > size) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Too many processors in X direction: %D %d",m,size);
  }
  if (n != PETSC_DECIDE) {
    if (n < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Non-positive number of processors in Y direction: %D",n);
    else if (n > size)  SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Too many processors in Y direction: %D %d",n,size);
  }
  if (p != PETSC_DECIDE) {
    if (p < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Non-positive number of processors in Z direction: %D",p);
    else if (p > size) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Too many processors in Z direction: %D %d",p,size);
  }

  /* Partition the array among the processors */
  if (m == PETSC_DECIDE && n != PETSC_DECIDE && p != PETSC_DECIDE) {
    m = size/(n*p);
  } else if (m != PETSC_DECIDE && n == PETSC_DECIDE && p != PETSC_DECIDE) {
    n = size/(m*p);
  } else if (m != PETSC_DECIDE && n != PETSC_DECIDE && p == PETSC_DECIDE) {
    p = size/(m*n);
  } else if (m == PETSC_DECIDE && n == PETSC_DECIDE && p != PETSC_DECIDE) {
    /* try for squarish distribution */
    m = (int)(0.5 + sqrt(((PetscReal)M)*((PetscReal)size)/((PetscReal)N*p)));
    if (!m) m = 1;
    while (m > 0) {
      n = size/(m*p);
      if (m*n*p == size) break;
      m--;
    }
    if (!m) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"bad p value: p = %D",p);
    if (M > N && m < n) {PetscInt _m = m; m = n; n = _m;}
  } else if (m == PETSC_DECIDE && n != PETSC_DECIDE && p == PETSC_DECIDE) {
    /* try for squarish distribution */
    m = (int)(0.5 + sqrt(((PetscReal)M)*((PetscReal)size)/((PetscReal)P*n)));
    if (!m) m = 1;
    while (m > 0) {
      p = size/(m*n);
      if (m*n*p == size) break;
      m--;
    }
    if (!m) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"bad n value: n = %D",n);
    if (M > P && m < p) {PetscInt _m = m; m = p; p = _m;}
  } else if (m != PETSC_DECIDE && n == PETSC_DECIDE && p == PETSC_DECIDE) {
    /* try for squarish distribution */
    n = (int)(0.5 + sqrt(((PetscReal)N)*((PetscReal)size)/((PetscReal)P*m)));
    if (!n) n = 1;
    while (n > 0) {
      p = size/(m*n);
      if (m*n*p == size) break;
      n--;
    }
    if (!n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"bad m value: m = %D",n);
    if (N > P && n < p) {PetscInt _n = n; n = p; p = _n;}
  } else if (m == PETSC_DECIDE && n == PETSC_DECIDE && p == PETSC_DECIDE) {
    /* try for squarish distribution */
    n = (PetscInt)(0.5 + pow(((PetscReal)N*N)*((PetscReal)size)/((PetscReal)P*M),(PetscReal)(1./3.)));
    if (!n) n = 1;
    while (n > 0) {
      pm = size/n;
      if (n*pm == size) break;
      n--;
    }
    if (!n) n = 1;
    m = (PetscInt)(0.5 + sqrt(((PetscReal)M)*((PetscReal)size)/((PetscReal)P*n)));
    if (!m) m = 1;
    while (m > 0) {
      p = size/(m*n);
      if (m*n*p == size) break;
      m--;
    }
    if (M > P && m < p) {PetscInt _m = m; m = p; p = _m;}
  } else if (m*n*p != size) SETERRQ(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Given Bad partition");

  if (m*n*p != size) SETERRQ(((PetscObject)da)->comm,PETSC_ERR_PLIB,"Could not find good partition");
  if (M < m) SETERRQ2(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Partition in x direction is too fine! %D %D",M,m);
  if (N < n) SETERRQ2(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Partition in y direction is too fine! %D %D",N,n);
  if (P < p) SETERRQ2(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Partition in z direction is too fine! %D %D",P,p);

  /*
     Determine locally owned region
     [x, y, or z]s is the first local node number, [x, y, z] is the number of local nodes
  */

  if (!lx) {
    ierr = PetscMalloc(m*sizeof(PetscInt), &dd->lx);CHKERRQ(ierr);
    lx = dd->lx;
    for (i=0; i<m; i++) {
      lx[i] = M/m + ((M % m) > (i % m));
    }
  }
  x  = lx[rank % m];
  xs = 0;
  for (i=0; i<(rank%m); i++) { xs += lx[i];}
  if (m > 1 && x < s) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column width is too thin for stencil! %D %D",x,s);

  if (!ly) {
    ierr = PetscMalloc(n*sizeof(PetscInt), &dd->ly);CHKERRQ(ierr);
    ly = dd->ly;
    for (i=0; i<n; i++) {
      ly[i] = N/n + ((N % n) > (i % n));
    }
  }
  y  = ly[(rank % (m*n))/m];
  if (n > 1 && y < s) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row width is too thin for stencil! %D %D",y,s);
  ys = 0;
  for (i=0; i<(rank % (m*n))/m; i++) { ys += ly[i];}

  if (!lz) {
    ierr = PetscMalloc(p*sizeof(PetscInt), &dd->lz);CHKERRQ(ierr);
    lz = dd->lz;
    for (i=0; i<p; i++) {
      lz[i] = P/p + ((P % p) > (i % p));
    }
  }
  z  = lz[rank/(m*n)];
  if (p > 1 && z < s) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Plane width is too thin for stencil! %D %D",z,s);
  zs = 0;
  for (i=0; i<(rank/(m*n)); i++) { zs += lz[i];}
  ye = ys + y;
  xe = xs + x;
  ze = zs + z;

  /* determine ghost region */
  /* Assume No Periodicity */
  if (xs-s > 0) Xs = xs - s; else Xs = 0;
  if (ys-s > 0) Ys = ys - s; else Ys = 0;
  if (zs-s > 0) Zs = zs - s; else Zs = 0;
  if (xe+s <= M) Xe = xe + s; else Xe = M;
  if (ye+s <= N) Ye = ye + s; else Ye = N;
  if (ze+s <= P) Ze = ze + s; else Ze = P;

  /* X Periodic */
  if (DAXPeriodic(wrap)){
    Xs = xs - s;
    Xe = xe + s;
  }

  /* Y Periodic */
  if (DAYPeriodic(wrap)){
    Ys = ys - s;
    Ye = ye + s;
  }

  /* Z Periodic */
  if (DAZPeriodic(wrap)){
    Zs = zs - s;
    Ze = ze + s;
  }

  /* Resize all X parameters to reflect w */
  x   *= dof;
  xs  *= dof;
  xe  *= dof;
  Xs  *= dof;
  Xe  *= dof;
  s_x  = s*dof;
  s_y  = s;
  s_z  = s;

  /* determine starting point of each processor */
  nn       = x*y*z;
  ierr     = PetscMalloc2(size+1,PetscInt,&bases,size,PetscInt,&ldims);CHKERRQ(ierr);
  ierr     = MPI_Allgather(&nn,1,MPIU_INT,ldims,1,MPIU_INT,comm);CHKERRQ(ierr);
  bases[0] = 0;
  for (i=1; i<=size; i++) {
    bases[i] = ldims[i-1];
  }
  for (i=1; i<=size; i++) {
    bases[i] += bases[i-1];
  }

  /* allocate the base parallel and sequential vectors */
  dd->Nlocal = x*y*z;
  ierr = VecCreateMPIWithArray(comm,dd->Nlocal,PETSC_DECIDE,0,&global);CHKERRQ(ierr);
  ierr = VecSetBlockSize(global,dof);CHKERRQ(ierr);
  dd->nlocal = (Xe-Xs)*(Ye-Ys)*(Ze-Zs);
  ierr = VecCreateSeqWithArray(MPI_COMM_SELF,dd->nlocal,0,&local);CHKERRQ(ierr);
  ierr = VecSetBlockSize(local,dof);CHKERRQ(ierr);

  /* generate appropriate vector scatters */
  /* local to global inserts non-ghost point region into global */
  ierr = VecGetOwnershipRange(global,&start,&end);CHKERRQ(ierr);
  ierr = ISCreateStride(comm,x*y*z,start,1,&to);CHKERRQ(ierr);

  left   = xs - Xs;
  bottom = ys - Ys; top = bottom + y;
  down   = zs - Zs; up  = down + z;
  count  = x*(top-bottom)*(up-down);
  ierr = PetscMalloc(count*sizeof(PetscInt)/dof,&idx);CHKERRQ(ierr);
  count  = 0;
  for (i=down; i<up; i++) {
    for (j=bottom; j<top; j++) {
      for (k=0; k<x; k += dof) {
        idx[count++] = ((left+j*(Xe-Xs))+i*(Xe-Xs)*(Ye-Ys) + k)/dof;
      }
    }
  }

  ierr = ISCreateBlock(comm,dof,count,idx,PETSC_OWN_POINTER,&from);CHKERRQ(ierr);

  ierr = VecScatterCreate(local,from,global,to,&ltog);CHKERRQ(ierr);
  ierr = PetscLogObjectParent(da,ltog);CHKERRQ(ierr);
  ierr = ISDestroy(from);CHKERRQ(ierr);
  ierr = ISDestroy(to);CHKERRQ(ierr);

  /* global to local must include ghost points */
  if (stencil_type == DA_STENCIL_BOX) {
    ierr = ISCreateStride(comm,(Xe-Xs)*(Ye-Ys)*(Ze-Zs),0,1,&to);CHKERRQ(ierr);
  } else {
    /* This is way ugly! We need to list the funny cross type region */
    /* the bottom chunck */
    left   = xs - Xs;
    bottom = ys - Ys; top = bottom + y;
    down   = zs - Zs;   up  = down + z;
    count  = down*(top-bottom)*x + (up-down)*(bottom*x  + (top-bottom)*(Xe-Xs) + (Ye-Ys-top)*x) + (Ze-Zs-up)*(top-bottom)*x;
    ierr   = PetscMalloc(count*sizeof(PetscInt)/dof,&idx);CHKERRQ(ierr);
    count  = 0;
    for (i=0; i<down; i++) {
      for (j=bottom; j<top; j++) {
        for (k=0; k<x; k += dof) idx[count++] = left+j*(Xe-Xs)+i*(Xe-Xs)*(Ye-Ys)+k;
      }
    }
    /* the middle piece */
    for (i=down; i<up; i++) {
      /* front */
      for (j=0; j<bottom; j++) {
        for (k=0; k<x; k += dof) idx[count++] = left+j*(Xe-Xs)+i*(Xe-Xs)*(Ye-Ys)+k;
      }
      /* middle */
      for (j=bottom; j<top; j++) {
        for (k=0; k<Xe-Xs; k += dof) idx[count++] = j*(Xe-Xs)+i*(Xe-Xs)*(Ye-Ys)+k;
      }
      /* back */
      for (j=top; j<Ye-Ys; j++) {
        for (k=0; k<x; k += dof) idx[count++] = left+j*(Xe-Xs)+i*(Xe-Xs)*(Ye-Ys)+k;
      }
    }
    /* the top piece */
    for (i=up; i<Ze-Zs; i++) {
      for (j=bottom; j<top; j++) {
        for (k=0; k<x; k += dof) idx[count++] = left+j*(Xe-Xs)+i*(Xe-Xs)*(Ye-Ys)+k;
      }
    }
    for (i=0; i<count; i++) idx[i] = idx[i]/dof;
    ierr = ISCreateBlock(comm,dof,count,idx,PETSC_OWN_POINTER,&to);CHKERRQ(ierr);
  }

  /* determine who lies on each side of use stored in    n24 n25 n26
                                                         n21 n22 n23
                                                         n18 n19 n20

                                                         n15 n16 n17
                                                         n12     n14
                                                         n9  n10 n11

                                                         n6  n7  n8
                                                         n3  n4  n5
                                                         n0  n1  n2
  */

  /* Solve for X,Y, and Z Periodic Case First, Then Modify Solution */

  /* Assume Nodes are Internal to the Cube */

  n0  = rank - m*n - m - 1;
  n1  = rank - m*n - m;
  n2  = rank - m*n - m + 1;
  n3  = rank - m*n -1;
  n4  = rank - m*n;
  n5  = rank - m*n + 1;
  n6  = rank - m*n + m - 1;
  n7  = rank - m*n + m;
  n8  = rank - m*n + m + 1;

  n9  = rank - m - 1;
  n10 = rank - m;
  n11 = rank - m + 1;
  n12 = rank - 1;
  n14 = rank + 1;
  n15 = rank + m - 1;
  n16 = rank + m;
  n17 = rank + m + 1;

  n18 = rank + m*n - m - 1;
  n19 = rank + m*n - m;
  n20 = rank + m*n - m + 1;
  n21 = rank + m*n - 1;
  n22 = rank + m*n;
  n23 = rank + m*n + 1;
  n24 = rank + m*n + m - 1;
  n25 = rank + m*n + m;
  n26 = rank + m*n + m + 1;

  /* Assume Pieces are on Faces of Cube */

  if (xs == 0) { /* First assume not corner or edge */
    n0  = rank       -1 - (m*n);
    n3  = rank + m   -1 - (m*n);
    n6  = rank + 2*m -1 - (m*n);
    n9  = rank       -1;
    n12 = rank + m   -1;
    n15 = rank + 2*m -1;
    n18 = rank       -1 + (m*n);
    n21 = rank + m   -1 + (m*n);
    n24 = rank + 2*m -1 + (m*n);
   }

  if (xe == M*dof) { /* First assume not corner or edge */
    n2  = rank -2*m +1 - (m*n);
    n5  = rank - m  +1 - (m*n);
    n8  = rank      +1 - (m*n);
    n11 = rank -2*m +1;
    n14 = rank - m  +1;
    n17 = rank      +1;
    n20 = rank -2*m +1 + (m*n);
    n23 = rank - m  +1 + (m*n);
    n26 = rank      +1 + (m*n);
  }

  if (ys==0) { /* First assume not corner or edge */
    n0  = rank + m * (n-1) -1 - (m*n);
    n1  = rank + m * (n-1)    - (m*n);
    n2  = rank + m * (n-1) +1 - (m*n);
    n9  = rank + m * (n-1) -1;
    n10 = rank + m * (n-1);
    n11 = rank + m * (n-1) +1;
    n18 = rank + m * (n-1) -1 + (m*n);
    n19 = rank + m * (n-1)    + (m*n);
    n20 = rank + m * (n-1) +1 + (m*n);
  }

  if (ye == N) { /* First assume not corner or edge */
    n6  = rank - m * (n-1) -1 - (m*n);
    n7  = rank - m * (n-1)    - (m*n);
    n8  = rank - m * (n-1) +1 - (m*n);
    n15 = rank - m * (n-1) -1;
    n16 = rank - m * (n-1);
    n17 = rank - m * (n-1) +1;
    n24 = rank - m * (n-1) -1 + (m*n);
    n25 = rank - m * (n-1)    + (m*n);
    n26 = rank - m * (n-1) +1 + (m*n);
  }

  if (zs == 0) { /* First assume not corner or edge */
    n0 = size - (m*n) + rank - m - 1;
    n1 = size - (m*n) + rank - m;
    n2 = size - (m*n) + rank - m + 1;
    n3 = size - (m*n) + rank - 1;
    n4 = size - (m*n) + rank;
    n5 = size - (m*n) + rank + 1;
    n6 = size - (m*n) + rank + m - 1;
    n7 = size - (m*n) + rank + m ;
    n8 = size - (m*n) + rank + m + 1;
  }

  if (ze == P) { /* First assume not corner or edge */
    n18 = (m*n) - (size-rank) - m - 1;
    n19 = (m*n) - (size-rank) - m;
    n20 = (m*n) - (size-rank) - m + 1;
    n21 = (m*n) - (size-rank) - 1;
    n22 = (m*n) - (size-rank);
    n23 = (m*n) - (size-rank) + 1;
    n24 = (m*n) - (size-rank) + m - 1;
    n25 = (m*n) - (size-rank) + m;
    n26 = (m*n) - (size-rank) + m + 1;
  }

  if ((xs==0) && (zs==0)) { /* Assume an edge, not corner */
    n0 = size - m*n + rank + m-1 - m;
    n3 = size - m*n + rank + m-1;
    n6 = size - m*n + rank + m-1 + m;
  }

  if ((xs==0) && (ze==P)) { /* Assume an edge, not corner */
    n18 = m*n - (size - rank) + m-1 - m;
    n21 = m*n - (size - rank) + m-1;
    n24 = m*n - (size - rank) + m-1 + m;
  }

  if ((xs==0) && (ys==0)) { /* Assume an edge, not corner */
    n0  = rank + m*n -1 - m*n;
    n9  = rank + m*n -1;
    n18 = rank + m*n -1 + m*n;
  }

  if ((xs==0) && (ye==N)) { /* Assume an edge, not corner */
    n6  = rank - m*(n-1) + m-1 - m*n;
    n15 = rank - m*(n-1) + m-1;
    n24 = rank - m*(n-1) + m-1 + m*n;
  }

  if ((xe==M*dof) && (zs==0)) { /* Assume an edge, not corner */
    n2 = size - (m*n-rank) - (m-1) - m;
    n5 = size - (m*n-rank) - (m-1);
    n8 = size - (m*n-rank) - (m-1) + m;
  }

  if ((xe==M*dof) && (ze==P)) { /* Assume an edge, not corner */
    n20 = m*n - (size - rank) - (m-1) - m;
    n23 = m*n - (size - rank) - (m-1);
    n26 = m*n - (size - rank) - (m-1) + m;
  }

  if ((xe==M*dof) && (ys==0)) { /* Assume an edge, not corner */
    n2  = rank + m*(n-1) - (m-1) - m*n;
    n11 = rank + m*(n-1) - (m-1);
    n20 = rank + m*(n-1) - (m-1) + m*n;
  }

  if ((xe==M*dof) && (ye==N)) { /* Assume an edge, not corner */
    n8  = rank - m*n +1 - m*n;
    n17 = rank - m*n +1;
    n26 = rank - m*n +1 + m*n;
  }

  if ((ys==0) && (zs==0)) { /* Assume an edge, not corner */
    n0 = size - m + rank -1;
    n1 = size - m + rank;
    n2 = size - m + rank +1;
  }

  if ((ys==0) && (ze==P)) { /* Assume an edge, not corner */
    n18 = m*n - (size - rank) + m*(n-1) -1;
    n19 = m*n - (size - rank) + m*(n-1);
    n20 = m*n - (size - rank) + m*(n-1) +1;
  }

  if ((ye==N) && (zs==0)) { /* Assume an edge, not corner */
    n6 = size - (m*n-rank) - m * (n-1) -1;
    n7 = size - (m*n-rank) - m * (n-1);
    n8 = size - (m*n-rank) - m * (n-1) +1;
  }

  if ((ye==N) && (ze==P)) { /* Assume an edge, not corner */
    n24 = rank - (size-m) -1;
    n25 = rank - (size-m);
    n26 = rank - (size-m) +1;
  }

  /* Check for Corners */
  if ((xs==0)   && (ys==0) && (zs==0)) { n0  = size -1;}
  if ((xs==0)   && (ys==0) && (ze==P)) { n18 = m*n-1;}
  if ((xs==0)   && (ye==N) && (zs==0)) { n6  = (size-1)-m*(n-1);}
  if ((xs==0)   && (ye==N) && (ze==P)) { n24 = m-1;}
  if ((xe==M*dof) && (ys==0) && (zs==0)) { n2  = size-m;}
  if ((xe==M*dof) && (ys==0) && (ze==P)) { n20 = m*n-m;}
  if ((xe==M*dof) && (ye==N) && (zs==0)) { n8  = size-m*n;}
  if ((xe==M*dof) && (ye==N) && (ze==P)) { n26 = 0;}

  /* Check for when not X,Y, and Z Periodic */

  /* If not X periodic */
  if ((wrap != DA_XPERIODIC)  && (wrap != DA_XYPERIODIC) &&
     (wrap != DA_XZPERIODIC) && (wrap != DA_XYZPERIODIC)) {
    if (xs==0)   {n0  = n3  = n6  = n9  = n12 = n15 = n18 = n21 = n24 = -2;}
    if (xe==M*dof) {n2  = n5  = n8  = n11 = n14 = n17 = n20 = n23 = n26 = -2;}
  }

  /* If not Y periodic */
  if ((wrap != DA_YPERIODIC)  && (wrap != DA_XYPERIODIC) &&
      (wrap != DA_YZPERIODIC) && (wrap != DA_XYZPERIODIC)) {
    if (ys==0)   {n0  = n1  = n2  = n9  = n10 = n11 = n18 = n19 = n20 = -2;}
    if (ye==N)   {n6  = n7  = n8  = n15 = n16 = n17 = n24 = n25 = n26 = -2;}
  }

  /* If not Z periodic */
  if ((wrap != DA_ZPERIODIC)  && (wrap != DA_XZPERIODIC) &&
      (wrap != DA_YZPERIODIC) && (wrap != DA_XYZPERIODIC)) {
    if (zs==0)   {n0  = n1  = n2  = n3  = n4  = n5  = n6  = n7  = n8  = -2;}
    if (ze==P)   {n18 = n19 = n20 = n21 = n22 = n23 = n24 = n25 = n26 = -2;}
  }

  ierr = PetscMalloc(27*sizeof(PetscInt),&dd->neighbors);CHKERRQ(ierr);
  dd->neighbors[0] = n0;
  dd->neighbors[1] = n1;
  dd->neighbors[2] = n2;
  dd->neighbors[3] = n3;
  dd->neighbors[4] = n4;
  dd->neighbors[5] = n5;
  dd->neighbors[6] = n6;
  dd->neighbors[7] = n7;
  dd->neighbors[8] = n8;
  dd->neighbors[9] = n9;
  dd->neighbors[10] = n10;
  dd->neighbors[11] = n11;
  dd->neighbors[12] = n12;
  dd->neighbors[13] = rank;
  dd->neighbors[14] = n14;
  dd->neighbors[15] = n15;
  dd->neighbors[16] = n16;
  dd->neighbors[17] = n17;
  dd->neighbors[18] = n18;
  dd->neighbors[19] = n19;
  dd->neighbors[20] = n20;
  dd->neighbors[21] = n21;
  dd->neighbors[22] = n22;
  dd->neighbors[23] = n23;
  dd->neighbors[24] = n24;
  dd->neighbors[25] = n25;
  dd->neighbors[26] = n26;

  /* If star stencil then delete the corner neighbors */
  if (stencil_type == DA_STENCIL_STAR) {
     /* save information about corner neighbors */
     sn0 = n0; sn1 = n1; sn2 = n2; sn3 = n3; sn5 = n5; sn6 = n6; sn7 = n7;
     sn8 = n8; sn9 = n9; sn11 = n11; sn15 = n15; sn17 = n17; sn18 = n18;
     sn19 = n19; sn20 = n20; sn21 = n21; sn23 = n23; sn24 = n24; sn25 = n25;
     sn26 = n26;
     n0  = n1  = n2  = n3  = n5  = n6  = n7  = n8  = n9  = n11 =
     n15 = n17 = n18 = n19 = n20 = n21 = n23 = n24 = n25 = n26 = -1;
  }


  ierr = PetscMalloc((Xe-Xs)*(Ye-Ys)*(Ze-Zs)*sizeof(PetscInt),&idx);CHKERRQ(ierr);
  ierr = PetscLogObjectMemory(da,(Xe-Xs)*(Ye-Ys)*(Ze-Zs)*sizeof(PetscInt));CHKERRQ(ierr);

  nn = 0;

  /* Bottom Level */
  for (k=0; k<s_z; k++) {
    for (i=1; i<=s_y; i++) {
      if (n0 >= 0) { /* left below */
        x_t = lx[n0 % m]*dof;
        y_t = ly[(n0 % (m*n))/m];
        z_t = lz[n0 / (m*n)];
        s_t = bases[n0] + x_t*y_t*z_t - (s_y-i)*x_t - s_x - (s_z-k-1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n1 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n1 % (m*n))/m];
        z_t = lz[n1 / (m*n)];
        s_t = bases[n1] + x_t*y_t*z_t - (s_y+1-i)*x_t - (s_z-k-1)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n2 >= 0) { /* right below */
        x_t = lx[n2 % m]*dof;
        y_t = ly[(n2 % (m*n))/m];
        z_t = lz[n2 / (m*n)];
        s_t = bases[n2] + x_t*y_t*z_t - (s_y+1-i)*x_t - (s_z-k-1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=0; i<y; i++) {
      if (n3 >= 0) { /* directly left */
        x_t = lx[n3 % m]*dof;
        y_t = y;
        z_t = lz[n3 / (m*n)];
        s_t = bases[n3] + (i+1)*x_t - s_x + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }

      if (n4 >= 0) { /* middle */
        x_t = x;
        y_t = y;
        z_t = lz[n4 / (m*n)];
        s_t = bases[n4] + i*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }

      if (n5 >= 0) { /* directly right */
        x_t = lx[n5 % m]*dof;
        y_t = y;
        z_t = lz[n5 / (m*n)];
        s_t = bases[n5] + i*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=1; i<=s_y; i++) {
      if (n6 >= 0) { /* left above */
        x_t = lx[n6 % m]*dof;
        y_t = ly[(n6 % (m*n))/m];
        z_t = lz[n6 / (m*n)];
        s_t = bases[n6] + i*x_t - s_x + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n7 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n7 % (m*n))/m];
        z_t = lz[n7 / (m*n)];
        s_t = bases[n7] + (i-1)*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n8 >= 0) { /* right above */
        x_t = lx[n8 % m]*dof;
        y_t = ly[(n8 % (m*n))/m];
        z_t = lz[n8 / (m*n)];
        s_t = bases[n8] + (i-1)*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }
  }

  /* Middle Level */
  for (k=0; k<z; k++) {
    for (i=1; i<=s_y; i++) {
      if (n9 >= 0) { /* left below */
        x_t = lx[n9 % m]*dof;
        y_t = ly[(n9 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n9] - (s_y-i)*x_t -s_x + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n10 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n10 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n10] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n11 >= 0) { /* right below */
        x_t = lx[n11 % m]*dof;
        y_t = ly[(n11 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n11] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=0; i<y; i++) {
      if (n12 >= 0) { /* directly left */
        x_t = lx[n12 % m]*dof;
        y_t = y;
        /* z_t = z; */
        s_t = bases[n12] + (i+1)*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }

      /* Interior */
      s_t = bases[rank] + i*x + k*x*y;
      for (j=0; j<x; j++) { idx[nn++] = s_t++;}

      if (n14 >= 0) { /* directly right */
        x_t = lx[n14 % m]*dof;
        y_t = y;
        /* z_t = z; */
        s_t = bases[n14] + i*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=1; i<=s_y; i++) {
      if (n15 >= 0) { /* left above */
        x_t = lx[n15 % m]*dof;
        y_t = ly[(n15 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n15] + i*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n16 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n16 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n16] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n17 >= 0) { /* right above */
        x_t = lx[n17 % m]*dof;
        y_t = ly[(n17 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n17] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }
  }

  /* Upper Level */
  for (k=0; k<s_z; k++) {
    for (i=1; i<=s_y; i++) {
      if (n18 >= 0) { /* left below */
        x_t = lx[n18 % m]*dof;
        y_t = ly[(n18 % (m*n))/m];
        /* z_t = lz[n18 / (m*n)]; */
        s_t = bases[n18] - (s_y-i)*x_t -s_x + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n19 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n19 % (m*n))/m];
        /* z_t = lz[n19 / (m*n)]; */
        s_t = bases[n19] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n20 >= 0) { /* right below */
        x_t = lx[n20 % m]*dof;
        y_t = ly[(n20 % (m*n))/m];
        /* z_t = lz[n20 / (m*n)]; */
        s_t = bases[n20] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=0; i<y; i++) {
      if (n21 >= 0) { /* directly left */
        x_t = lx[n21 % m]*dof;
        y_t = y;
        /* z_t = lz[n21 / (m*n)]; */
        s_t = bases[n21] + (i+1)*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }

      if (n22 >= 0) { /* middle */
        x_t = x;
        y_t = y;
        /* z_t = lz[n22 / (m*n)]; */
        s_t = bases[n22] + i*x_t + k*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }

      if (n23 >= 0) { /* directly right */
        x_t = lx[n23 % m]*dof;
        y_t = y;
        /* z_t = lz[n23 / (m*n)]; */
        s_t = bases[n23] + i*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=1; i<=s_y; i++) {
      if (n24 >= 0) { /* left above */
        x_t = lx[n24 % m]*dof;
        y_t = ly[(n24 % (m*n))/m];
        /* z_t = lz[n24 / (m*n)]; */
        s_t = bases[n24] + i*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n25 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n25 % (m*n))/m];
        /* z_t = lz[n25 / (m*n)]; */
        s_t = bases[n25] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n26 >= 0) { /* right above */
        x_t = lx[n26 % m]*dof;
        y_t = ly[(n26 % (m*n))/m];
        /* z_t = lz[n26 / (m*n)]; */
        s_t = bases[n26] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }
  }
  base = bases[rank];
  {
    PetscInt nnn = nn/dof,*iidx;
    ierr = PetscMalloc(nnn*sizeof(PetscInt),&iidx);CHKERRQ(ierr);
    for (i=0; i<nnn; i++) {
      iidx[i] = idx[dof*i]/dof;
    }
    ierr = ISCreateBlock(comm,dof,nnn,iidx,PETSC_OWN_POINTER,&from);CHKERRQ(ierr);
  }
  ierr = VecScatterCreate(global,from,local,to,&gtol);CHKERRQ(ierr);
  ierr = PetscLogObjectParent(da,gtol);CHKERRQ(ierr);
  ierr = ISDestroy(from);CHKERRQ(ierr);
  ierr = ISDestroy(to);CHKERRQ(ierr);

  dd->m  = m;  dd->n  = n;  dd->p  = p;
  dd->xs = xs; dd->xe = xe; dd->ys = ys; dd->ye = ye; dd->zs = zs; dd->ze = ze;
  dd->Xs = Xs; dd->Xe = Xe; dd->Ys = Ys; dd->Ye = Ye; dd->Zs = Zs; dd->Ze = Ze;

  ierr = VecDestroy(local);CHKERRQ(ierr);
  ierr = VecDestroy(global);CHKERRQ(ierr);

  if (stencil_type == DA_STENCIL_STAR) {
    /*
        Recompute the local to global mappings, this time keeping the
      information about the cross corner processor numbers.
    */
    n0  = sn0;  n1  = sn1;  n2  = sn2;  n3  = sn3;  n5  = sn5;  n6  = sn6; n7 = sn7;
    n8  = sn8;  n9  = sn9;  n11 = sn11; n15 = sn15; n17 = sn17; n18 = sn18;
    n19 = sn19; n20 = sn20; n21 = sn21; n23 = sn23; n24 = sn24; n25 = sn25;
    n26 = sn26;

    nn = 0;

    /* Bottom Level */
    for (k=0; k<s_z; k++) {
      for (i=1; i<=s_y; i++) {
        if (n0 >= 0) { /* left below */
          x_t = lx[n0 % m]*dof;
          y_t = ly[(n0 % (m*n))/m];
          z_t = lz[n0 / (m*n)];
          s_t = bases[n0] + x_t*y_t*z_t - (s_y-i)*x_t - s_x - (s_z-k-1)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
        if (n1 >= 0) { /* directly below */
          x_t = x;
          y_t = ly[(n1 % (m*n))/m];
          z_t = lz[n1 / (m*n)];
          s_t = bases[n1] + x_t*y_t*z_t - (s_y+1-i)*x_t - (s_z-k-1)*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }
        if (n2 >= 0) { /* right below */
          x_t = lx[n2 % m]*dof;
          y_t = ly[(n2 % (m*n))/m];
          z_t = lz[n2 / (m*n)];
          s_t = bases[n2] + x_t*y_t*z_t - (s_y+1-i)*x_t - (s_z-k-1)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }

      for (i=0; i<y; i++) {
        if (n3 >= 0) { /* directly left */
          x_t = lx[n3 % m]*dof;
          y_t = y;
          z_t = lz[n3 / (m*n)];
          s_t = bases[n3] + (i+1)*x_t - s_x + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }

        if (n4 >= 0) { /* middle */
          x_t = x;
          y_t = y;
          z_t = lz[n4 / (m*n)];
          s_t = bases[n4] + i*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }

        if (n5 >= 0) { /* directly right */
          x_t = lx[n5 % m]*dof;
          y_t = y;
          z_t = lz[n5 / (m*n)];
          s_t = bases[n5] + i*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }

      for (i=1; i<=s_y; i++) {
        if (n6 >= 0) { /* left above */
          x_t = lx[n6 % m]*dof;
          y_t = ly[(n6 % (m*n))/m];
          z_t = lz[n6 / (m*n)];
          s_t = bases[n6] + i*x_t - s_x + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
        if (n7 >= 0) { /* directly above */
          x_t = x;
          y_t = ly[(n7 % (m*n))/m];
          z_t = lz[n7 / (m*n)];
          s_t = bases[n7] + (i-1)*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }
        if (n8 >= 0) { /* right above */
          x_t = lx[n8 % m]*dof;
          y_t = ly[(n8 % (m*n))/m];
          z_t = lz[n8 / (m*n)];
          s_t = bases[n8] + (i-1)*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }
    }

    /* Middle Level */
    for (k=0; k<z; k++) {
      for (i=1; i<=s_y; i++) {
        if (n9 >= 0) { /* left below */
          x_t = lx[n9 % m]*dof;
          y_t = ly[(n9 % (m*n))/m];
          /* z_t = z; */
          s_t = bases[n9] - (s_y-i)*x_t -s_x + (k+1)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
        if (n10 >= 0) { /* directly below */
          x_t = x;
          y_t = ly[(n10 % (m*n))/m];
          /* z_t = z; */
          s_t = bases[n10] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }
        if (n11 >= 0) { /* right below */
          x_t = lx[n11 % m]*dof;
          y_t = ly[(n11 % (m*n))/m];
          /* z_t = z; */
          s_t = bases[n11] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }

      for (i=0; i<y; i++) {
        if (n12 >= 0) { /* directly left */
          x_t = lx[n12 % m]*dof;
          y_t = y;
          /* z_t = z; */
          s_t = bases[n12] + (i+1)*x_t - s_x + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }

        /* Interior */
        s_t = bases[rank] + i*x + k*x*y;
        for (j=0; j<x; j++) { idx[nn++] = s_t++;}

        if (n14 >= 0) { /* directly right */
          x_t = lx[n14 % m]*dof;
          y_t = y;
          /* z_t = z; */
          s_t = bases[n14] + i*x_t + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }

      for (i=1; i<=s_y; i++) {
        if (n15 >= 0) { /* left above */
          x_t = lx[n15 % m]*dof;
          y_t = ly[(n15 % (m*n))/m];
          /* z_t = z; */
          s_t = bases[n15] + i*x_t - s_x + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
        if (n16 >= 0) { /* directly above */
          x_t = x;
          y_t = ly[(n16 % (m*n))/m];
          /* z_t = z; */
          s_t = bases[n16] + (i-1)*x_t + k*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }
        if (n17 >= 0) { /* right above */
          x_t = lx[n17 % m]*dof;
          y_t = ly[(n17 % (m*n))/m];
          /* z_t = z; */
          s_t = bases[n17] + (i-1)*x_t + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }
    }

    /* Upper Level */
    for (k=0; k<s_z; k++) {
      for (i=1; i<=s_y; i++) {
        if (n18 >= 0) { /* left below */
          x_t = lx[n18 % m]*dof;
          y_t = ly[(n18 % (m*n))/m];
          /* z_t = lz[n18 / (m*n)]; */
          s_t = bases[n18] - (s_y-i)*x_t -s_x + (k+1)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
        if (n19 >= 0) { /* directly below */
          x_t = x;
          y_t = ly[(n19 % (m*n))/m];
          /* z_t = lz[n19 / (m*n)]; */
          s_t = bases[n19] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }
        if (n20 >= 0) { /* right below */
          x_t = lx[n20 % m]*dof;
          y_t = ly[(n20 % (m*n))/m];
          /* z_t = lz[n20 / (m*n)]; */
          s_t = bases[n20] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }

      for (i=0; i<y; i++) {
        if (n21 >= 0) { /* directly left */
          x_t = lx[n21 % m]*dof;
          y_t = y;
          /* z_t = lz[n21 / (m*n)]; */
          s_t = bases[n21] + (i+1)*x_t - s_x + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }

        if (n22 >= 0) { /* middle */
          x_t = x;
          y_t = y;
          /* z_t = lz[n22 / (m*n)]; */
          s_t = bases[n22] + i*x_t + k*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }

        if (n23 >= 0) { /* directly right */
          x_t = lx[n23 % m]*dof;
          y_t = y;
          /* z_t = lz[n23 / (m*n)]; */
          s_t = bases[n23] + i*x_t + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }

      for (i=1; i<=s_y; i++) {
        if (n24 >= 0) { /* left above */
          x_t = lx[n24 % m]*dof;
          y_t = ly[(n24 % (m*n))/m];
          /* z_t = lz[n24 / (m*n)]; */
          s_t = bases[n24] + i*x_t - s_x + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
        if (n25 >= 0) { /* directly above */
          x_t = x;
          y_t = ly[(n25 % (m*n))/m];
          /* z_t = lz[n25 / (m*n)]; */
          s_t = bases[n25] + (i-1)*x_t + k*x_t*y_t;
          for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
        }
        if (n26 >= 0) { /* right above */
          x_t = lx[n26 % m]*dof;
          y_t = ly[(n26 % (m*n))/m];
          /* z_t = lz[n26 / (m*n)]; */
          s_t = bases[n26] + (i-1)*x_t + k*x_t*y_t;
          for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
        }
      }
    }
  }
  /* redo idx to include "missing" ghost points */
  /* Solve for X,Y, and Z Periodic Case First, Then Modify Solution */

  /* Assume Nodes are Internal to the Cube */

  n0  = rank - m*n - m - 1;
  n1  = rank - m*n - m;
  n2  = rank - m*n - m + 1;
  n3  = rank - m*n -1;
  n4  = rank - m*n;
  n5  = rank - m*n + 1;
  n6  = rank - m*n + m - 1;
  n7  = rank - m*n + m;
  n8  = rank - m*n + m + 1;

  n9  = rank - m - 1;
  n10 = rank - m;
  n11 = rank - m + 1;
  n12 = rank - 1;
  n14 = rank + 1;
  n15 = rank + m - 1;
  n16 = rank + m;
  n17 = rank + m + 1;

  n18 = rank + m*n - m - 1;
  n19 = rank + m*n - m;
  n20 = rank + m*n - m + 1;
  n21 = rank + m*n - 1;
  n22 = rank + m*n;
  n23 = rank + m*n + 1;
  n24 = rank + m*n + m - 1;
  n25 = rank + m*n + m;
  n26 = rank + m*n + m + 1;

  /* Assume Pieces are on Faces of Cube */

  if (xs == 0) { /* First assume not corner or edge */
    n0  = rank       -1 - (m*n);
    n3  = rank + m   -1 - (m*n);
    n6  = rank + 2*m -1 - (m*n);
    n9  = rank       -1;
    n12 = rank + m   -1;
    n15 = rank + 2*m -1;
    n18 = rank       -1 + (m*n);
    n21 = rank + m   -1 + (m*n);
    n24 = rank + 2*m -1 + (m*n);
   }

  if (xe == M*dof) { /* First assume not corner or edge */
    n2  = rank -2*m +1 - (m*n);
    n5  = rank - m  +1 - (m*n);
    n8  = rank      +1 - (m*n);
    n11 = rank -2*m +1;
    n14 = rank - m  +1;
    n17 = rank      +1;
    n20 = rank -2*m +1 + (m*n);
    n23 = rank - m  +1 + (m*n);
    n26 = rank      +1 + (m*n);
  }

  if (ys==0) { /* First assume not corner or edge */
    n0  = rank + m * (n-1) -1 - (m*n);
    n1  = rank + m * (n-1)    - (m*n);
    n2  = rank + m * (n-1) +1 - (m*n);
    n9  = rank + m * (n-1) -1;
    n10 = rank + m * (n-1);
    n11 = rank + m * (n-1) +1;
    n18 = rank + m * (n-1) -1 + (m*n);
    n19 = rank + m * (n-1)    + (m*n);
    n20 = rank + m * (n-1) +1 + (m*n);
  }

  if (ye == N) { /* First assume not corner or edge */
    n6  = rank - m * (n-1) -1 - (m*n);
    n7  = rank - m * (n-1)    - (m*n);
    n8  = rank - m * (n-1) +1 - (m*n);
    n15 = rank - m * (n-1) -1;
    n16 = rank - m * (n-1);
    n17 = rank - m * (n-1) +1;
    n24 = rank - m * (n-1) -1 + (m*n);
    n25 = rank - m * (n-1)    + (m*n);
    n26 = rank - m * (n-1) +1 + (m*n);
  }

  if (zs == 0) { /* First assume not corner or edge */
    n0 = size - (m*n) + rank - m - 1;
    n1 = size - (m*n) + rank - m;
    n2 = size - (m*n) + rank - m + 1;
    n3 = size - (m*n) + rank - 1;
    n4 = size - (m*n) + rank;
    n5 = size - (m*n) + rank + 1;
    n6 = size - (m*n) + rank + m - 1;
    n7 = size - (m*n) + rank + m ;
    n8 = size - (m*n) + rank + m + 1;
  }

  if (ze == P) { /* First assume not corner or edge */
    n18 = (m*n) - (size-rank) - m - 1;
    n19 = (m*n) - (size-rank) - m;
    n20 = (m*n) - (size-rank) - m + 1;
    n21 = (m*n) - (size-rank) - 1;
    n22 = (m*n) - (size-rank);
    n23 = (m*n) - (size-rank) + 1;
    n24 = (m*n) - (size-rank) + m - 1;
    n25 = (m*n) - (size-rank) + m;
    n26 = (m*n) - (size-rank) + m + 1;
  }

  if ((xs==0) && (zs==0)) { /* Assume an edge, not corner */
    n0 = size - m*n + rank + m-1 - m;
    n3 = size - m*n + rank + m-1;
    n6 = size - m*n + rank + m-1 + m;
  }

  if ((xs==0) && (ze==P)) { /* Assume an edge, not corner */
    n18 = m*n - (size - rank) + m-1 - m;
    n21 = m*n - (size - rank) + m-1;
    n24 = m*n - (size - rank) + m-1 + m;
  }

  if ((xs==0) && (ys==0)) { /* Assume an edge, not corner */
    n0  = rank + m*n -1 - m*n;
    n9  = rank + m*n -1;
    n18 = rank + m*n -1 + m*n;
  }

  if ((xs==0) && (ye==N)) { /* Assume an edge, not corner */
    n6  = rank - m*(n-1) + m-1 - m*n;
    n15 = rank - m*(n-1) + m-1;
    n24 = rank - m*(n-1) + m-1 + m*n;
  }

  if ((xe==M*dof) && (zs==0)) { /* Assume an edge, not corner */
    n2 = size - (m*n-rank) - (m-1) - m;
    n5 = size - (m*n-rank) - (m-1);
    n8 = size - (m*n-rank) - (m-1) + m;
  }

  if ((xe==M*dof) && (ze==P)) { /* Assume an edge, not corner */
    n20 = m*n - (size - rank) - (m-1) - m;
    n23 = m*n - (size - rank) - (m-1);
    n26 = m*n - (size - rank) - (m-1) + m;
  }

  if ((xe==M*dof) && (ys==0)) { /* Assume an edge, not corner */
    n2  = rank + m*(n-1) - (m-1) - m*n;
    n11 = rank + m*(n-1) - (m-1);
    n20 = rank + m*(n-1) - (m-1) + m*n;
  }

  if ((xe==M*dof) && (ye==N)) { /* Assume an edge, not corner */
    n8  = rank - m*n +1 - m*n;
    n17 = rank - m*n +1;
    n26 = rank - m*n +1 + m*n;
  }

  if ((ys==0) && (zs==0)) { /* Assume an edge, not corner */
    n0 = size - m + rank -1;
    n1 = size - m + rank;
    n2 = size - m + rank +1;
  }

  if ((ys==0) && (ze==P)) { /* Assume an edge, not corner */
    n18 = m*n - (size - rank) + m*(n-1) -1;
    n19 = m*n - (size - rank) + m*(n-1);
    n20 = m*n - (size - rank) + m*(n-1) +1;
  }

  if ((ye==N) && (zs==0)) { /* Assume an edge, not corner */
    n6 = size - (m*n-rank) - m * (n-1) -1;
    n7 = size - (m*n-rank) - m * (n-1);
    n8 = size - (m*n-rank) - m * (n-1) +1;
  }

  if ((ye==N) && (ze==P)) { /* Assume an edge, not corner */
    n24 = rank - (size-m) -1;
    n25 = rank - (size-m);
    n26 = rank - (size-m) +1;
  }

  /* Check for Corners */
  if ((xs==0)   && (ys==0) && (zs==0)) { n0  = size -1;}
  if ((xs==0)   && (ys==0) && (ze==P)) { n18 = m*n-1;}
  if ((xs==0)   && (ye==N) && (zs==0)) { n6  = (size-1)-m*(n-1);}
  if ((xs==0)   && (ye==N) && (ze==P)) { n24 = m-1;}
  if ((xe==M*dof) && (ys==0) && (zs==0)) { n2  = size-m;}
  if ((xe==M*dof) && (ys==0) && (ze==P)) { n20 = m*n-m;}
  if ((xe==M*dof) && (ye==N) && (zs==0)) { n8  = size-m*n;}
  if ((xe==M*dof) && (ye==N) && (ze==P)) { n26 = 0;}

  /* Check for when not X,Y, and Z Periodic */

  /* If not X periodic */
  if (!DAXPeriodic(wrap)){
    if (xs==0)   {n0  = n3  = n6  = n9  = n12 = n15 = n18 = n21 = n24 = -2;}
    if (xe==M*dof) {n2  = n5  = n8  = n11 = n14 = n17 = n20 = n23 = n26 = -2;}
  }

  /* If not Y periodic */
  if (!DAYPeriodic(wrap)){
    if (ys==0)   {n0  = n1  = n2  = n9  = n10 = n11 = n18 = n19 = n20 = -2;}
    if (ye==N)   {n6  = n7  = n8  = n15 = n16 = n17 = n24 = n25 = n26 = -2;}
  }

  /* If not Z periodic */
  if (!DAZPeriodic(wrap)){
    if (zs==0)   {n0  = n1  = n2  = n3  = n4  = n5  = n6  = n7  = n8  = -2;}
    if (ze==P)   {n18 = n19 = n20 = n21 = n22 = n23 = n24 = n25 = n26 = -2;}
  }

  nn = 0;

  /* Bottom Level */
  for (k=0; k<s_z; k++) {
    for (i=1; i<=s_y; i++) {
      if (n0 >= 0) { /* left below */
        x_t = lx[n0 % m]*dof;
        y_t = ly[(n0 % (m*n))/m];
        z_t = lz[n0 / (m*n)];
        s_t = bases[n0] + x_t*y_t*z_t - (s_y-i)*x_t -s_x - (s_z-k-1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n1 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n1 % (m*n))/m];
        z_t = lz[n1 / (m*n)];
        s_t = bases[n1] + x_t*y_t*z_t - (s_y+1-i)*x_t - (s_z-k-1)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n2 >= 0) { /* right below */
        x_t = lx[n2 % m]*dof;
        y_t = ly[(n2 % (m*n))/m];
        z_t = lz[n2 / (m*n)];
        s_t = bases[n2] + x_t*y_t*z_t - (s_y+1-i)*x_t - (s_z-k-1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=0; i<y; i++) {
      if (n3 >= 0) { /* directly left */
        x_t = lx[n3 % m]*dof;
        y_t = y;
        z_t = lz[n3 / (m*n)];
        s_t = bases[n3] + (i+1)*x_t - s_x + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }

      if (n4 >= 0) { /* middle */
        x_t = x;
        y_t = y;
        z_t = lz[n4 / (m*n)];
        s_t = bases[n4] + i*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }

      if (n5 >= 0) { /* directly right */
        x_t = lx[n5 % m]*dof;
        y_t = y;
        z_t = lz[n5 / (m*n)];
        s_t = bases[n5] + i*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=1; i<=s_y; i++) {
      if (n6 >= 0) { /* left above */
        x_t = lx[n6 % m]*dof;
        y_t = ly[(n6 % (m*n))/m];
        z_t = lz[n6 / (m*n)];
        s_t = bases[n6] + i*x_t - s_x + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n7 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n7 % (m*n))/m];
        z_t = lz[n7 / (m*n)];
        s_t = bases[n7] + (i-1)*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n8 >= 0) { /* right above */
        x_t = lx[n8 % m]*dof;
        y_t = ly[(n8 % (m*n))/m];
        z_t = lz[n8 / (m*n)];
        s_t = bases[n8] + (i-1)*x_t + x_t*y_t*z_t - (s_z-k)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }
  }

  /* Middle Level */
  for (k=0; k<z; k++) {
    for (i=1; i<=s_y; i++) {
      if (n9 >= 0) { /* left below */
        x_t = lx[n9 % m]*dof;
        y_t = ly[(n9 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n9] - (s_y-i)*x_t -s_x + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n10 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n10 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n10] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n11 >= 0) { /* right below */
        x_t = lx[n11 % m]*dof;
        y_t = ly[(n11 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n11] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=0; i<y; i++) {
      if (n12 >= 0) { /* directly left */
        x_t = lx[n12 % m]*dof;
        y_t = y;
        /* z_t = z; */
        s_t = bases[n12] + (i+1)*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }

      /* Interior */
      s_t = bases[rank] + i*x + k*x*y;
      for (j=0; j<x; j++) { idx[nn++] = s_t++;}

      if (n14 >= 0) { /* directly right */
        x_t = lx[n14 % m]*dof;
        y_t = y;
        /* z_t = z; */
        s_t = bases[n14] + i*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=1; i<=s_y; i++) {
      if (n15 >= 0) { /* left above */
        x_t = lx[n15 % m]*dof;
        y_t = ly[(n15 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n15] + i*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n16 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n16 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n16] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n17 >= 0) { /* right above */
        x_t = lx[n17 % m]*dof;
        y_t = ly[(n17 % (m*n))/m];
        /* z_t = z; */
        s_t = bases[n17] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }
  }

  /* Upper Level */
  for (k=0; k<s_z; k++) {
    for (i=1; i<=s_y; i++) {
      if (n18 >= 0) { /* left below */
        x_t = lx[n18 % m]*dof;
        y_t = ly[(n18 % (m*n))/m];
        /* z_t = lz[n18 / (m*n)]; */
        s_t = bases[n18] - (s_y-i)*x_t -s_x + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n19 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n19 % (m*n))/m];
        /* z_t = lz[n19 / (m*n)]; */
        s_t = bases[n19] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n20 >= 0) { /* right belodof */
        x_t = lx[n20 % m]*dof;
        y_t = ly[(n20 % (m*n))/m];
        /* z_t = lz[n20 / (m*n)]; */
        s_t = bases[n20] - (s_y+1-i)*x_t + (k+1)*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=0; i<y; i++) {
      if (n21 >= 0) { /* directly left */
        x_t = lx[n21 % m]*dof;
        y_t = y;
        /* z_t = lz[n21 / (m*n)]; */
        s_t = bases[n21] + (i+1)*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }

      if (n22 >= 0) { /* middle */
        x_t = x;
        y_t = y;
        /* z_t = lz[n22 / (m*n)]; */
        s_t = bases[n22] + i*x_t + k*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }

      if (n23 >= 0) { /* directly right */
        x_t = lx[n23 % m]*dof;
        y_t = y;
        /* z_t = lz[n23 / (m*n)]; */
        s_t = bases[n23] + i*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }

    for (i=1; i<=s_y; i++) {
      if (n24 >= 0) { /* left above */
        x_t = lx[n24 % m]*dof;
        y_t = ly[(n24 % (m*n))/m];
        /* z_t = lz[n24 / (m*n)]; */
        s_t = bases[n24] + i*x_t - s_x + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
      if (n25 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n25 % (m*n))/m];
        /* z_t = lz[n25 / (m*n)]; */
        s_t = bases[n25] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<x_t; j++) { idx[nn++] = s_t++;}
      }
      if (n26 >= 0) { /* right above */
        x_t = lx[n26 % m]*dof;
        y_t = ly[(n26 % (m*n))/m];
        /* z_t = lz[n26 / (m*n)]; */
        s_t = bases[n26] + (i-1)*x_t + k*x_t*y_t;
        for (j=0; j<s_x; j++) { idx[nn++] = s_t++;}
      }
    }
  }
  ierr = PetscFree2(bases,ldims);CHKERRQ(ierr);
  dd->gtol      = gtol;
  dd->ltog      = ltog;
  dd->idx       = idx;
  dd->Nl        = nn;
  dd->base      = base;
  da->ops->view = DMView_DA_3d;

  /*
     Set the local to global ordering in the global vector, this allows use
     of VecSetValuesLocal().
  */
  ierr = ISLocalToGlobalMappingCreate(comm,nn,idx,PETSC_OWN_POINTER,&dd->ltogmap);CHKERRQ(ierr);
  ierr = ISLocalToGlobalMappingBlock(dd->ltogmap,dd->w,&dd->ltogmapb);CHKERRQ(ierr);
  ierr = PetscLogObjectParent(da,dd->ltogmap);CHKERRQ(ierr);

  dd->ltol = PETSC_NULL;
  dd->ao   = PETSC_NULL;
  PetscFunctionReturn(0);
}
EXTERN_C_END

#undef __FUNCT__
#define __FUNCT__ "DACreate3d"
/*@C
   DACreate3d - Creates an object that will manage the communication of three-dimensional
   regular array data that is distributed across some processors.

   Collective on MPI_Comm

   Input Parameters:
+  comm - MPI communicator
.  wrap - type of periodicity the array should have, if any.  Use one
          of DA_NONPERIODIC, DA_XPERIODIC, DA_YPERIODIC, DA_ZPERIODIC, DA_XYPERIODIC, DA_XZPERIODIC, DA_YZPERIODIC, DA_XYZPERIODIC, or DA_XYZGHOSTED.
.  stencil_type - Type of stencil (DA_STENCIL_STAR or DA_STENCIL_BOX)
.  M,N,P - global dimension in each direction of the array (use -M, -N, and or -P to indicate that it may be set to a different value
            from the command line with -da_grid_x <M> -da_grid_y <N> -da_grid_z <P>)
.  m,n,p - corresponding number of processors in each dimension
           (or PETSC_DECIDE to have calculated)
.  dof - number of degrees of freedom per node
.  lx, ly, lz - arrays containing the number of nodes in each cell along
          the x, y, and z coordinates, or PETSC_NULL. If non-null, these
          must be of length as m,n,p and the corresponding
          m,n, or p cannot be PETSC_DECIDE. Sum of the lx[] entries must be M, sum of
          the ly[] must N, sum of the lz[] must be P
-  s - stencil width

   Output Parameter:
.  da - the resulting distributed array object

   Options Database Key:
+  -da_view - Calls DMView() at the conclusion of DACreate3d()
.  -da_grid_x <nx> - number of grid points in x direction, if M < 0
.  -da_grid_y <ny> - number of grid points in y direction, if N < 0
.  -da_grid_z <nz> - number of grid points in z direction, if P < 0
.  -da_processors_x <MX> - number of processors in x direction
.  -da_processors_y <MY> - number of processors in y direction
.  -da_processors_z <MZ> - number of processors in z direction
.  -da_refine_x - refinement ratio in x direction
.  -da_refine_y - refinement ratio in y direction
-  -da_refine_y - refinement ratio in z direction

   Level: beginner

   Notes:
   The stencil type DA_STENCIL_STAR with width 1 corresponds to the
   standard 7-pt stencil, while DA_STENCIL_BOX with width 1 denotes
   the standard 27-pt stencil.

   The array data itself is NOT stored in the DA, it is stored in Vec objects;
   The appropriate vector objects can be obtained with calls to DACreateGlobalVector()
   and DACreateLocalVector() and calls to VecDuplicate() if more are needed.

.keywords: distributed array, create, three-dimensional

.seealso: DMDestroy(), DMView(), DACreate1d(), DACreate2d(), DMGlobalToLocalBegin(), DAGetRefinementFactor(),
          DMGlobalToLocalEnd(), DMLocalToGlobalBegin(), DALocalToLocalBegin(), DALocalToLocalEnd(), DASetRefinementFactor(),
          DAGetInfo(), DACreateGlobalVector(), DACreateLocalVector(), DACreateNaturalVector(), DALoad(), DAGetOwnershipRanges()

@*/
PetscErrorCode PETSCDM_DLLEXPORT DACreate3d(MPI_Comm comm,DAPeriodicType wrap,DAStencilType stencil_type,PetscInt M,
               PetscInt N,PetscInt P,PetscInt m,PetscInt n,PetscInt p,PetscInt dof,PetscInt s,const PetscInt lx[],const PetscInt ly[],const PetscInt lz[],DM *da)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = DACreate(comm, da);CHKERRQ(ierr);
  ierr = DASetDim(*da, 3);CHKERRQ(ierr);
  ierr = DASetSizes(*da, M, N, P);CHKERRQ(ierr);
  ierr = DASetNumProcs(*da, m, n, p);CHKERRQ(ierr);
  ierr = DASetPeriodicity(*da, wrap);CHKERRQ(ierr);
  ierr = DASetDof(*da, dof);CHKERRQ(ierr);
  ierr = DASetStencilType(*da, stencil_type);CHKERRQ(ierr);
  ierr = DASetStencilWidth(*da, s);CHKERRQ(ierr);
  ierr = DASetOwnershipRanges(*da, lx, ly, lz);CHKERRQ(ierr);
  /* This violates the behavior for other classes, but right now users expect negative dimensions to be handled this way */
  ierr = DMSetFromOptions(*da);CHKERRQ(ierr);
  ierr = DMSetUp(*da);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}