17d0a6c19SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/ 347c6ae99SBarry Smith 44416b707SBarry Smith PetscErrorCode DMSetFromOptions_DA(PetscOptionItems *PetscOptionsObject,DM da) 547c6ae99SBarry Smith { 647c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 7c73cfb54SMatthew G. Knepley PetscInt refine = 0,dim = da->dim,maxnlevels = 100,refx[100],refy[100],refz[100],n,i; 8897f7067SBarry Smith PetscBool flg; 947c6ae99SBarry Smith 1047c6ae99SBarry Smith PetscFunctionBegin; 11064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(da,DM_CLASSID,2); 1247c6ae99SBarry Smith 1308401ef6SPierre Jolivet PetscCheck(dd->M >= 0,PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 1408401ef6SPierre Jolivet PetscCheck(dd->N >= 0,PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 1508401ef6SPierre Jolivet PetscCheck(dd->P >= 0,PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 16235683edSBarry Smith 17d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject,"DMDA Options"); 189566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_grid_x","Number of grid points in x direction","DMDASetSizes",dd->M,&dd->M,NULL,1)); 199566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_grid_y","Number of grid points in y direction","DMDASetSizes",dd->N,&dd->N,NULL,1)); 209566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_grid_z","Number of grid points in z direction","DMDASetSizes",dd->P,&dd->P,NULL,1)); 217ddda789SPeter Brune 229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_overlap","Decomposition overlap in all directions","DMDASetOverlap",dd->xol,&dd->xol,&flg,0)); 239566063dSJacob Faibussowitsch if (flg) PetscCall(DMDASetOverlap(da,dd->xol,dd->xol,dd->xol)); 249566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_overlap_x","Decomposition overlap in x direction","DMDASetOverlap",dd->xol,&dd->xol,NULL,0)); 259566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_overlap_y","Decomposition overlap in y direction","DMDASetOverlap",dd->yol,&dd->yol,NULL,0)); 269566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_overlap_z","Decomposition overlap in z direction","DMDASetOverlap",dd->zol,&dd->zol,NULL,0)); 273e7870d2SPeter Brune 289566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_local_subdomains","","DMDASetNumLocalSubdomains",dd->Nsub,&dd->Nsub,&flg,PETSC_DECIDE)); 299566063dSJacob Faibussowitsch if (flg) PetscCall(DMDASetNumLocalSubDomains(da,dd->Nsub)); 303e7870d2SPeter Brune 318d07fd27SPatrick Sanan /* Handle DMDA parallel distribution */ 329566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_processors_x","Number of processors in x direction","DMDASetNumProcs",dd->m,&dd->m,NULL,PETSC_DECIDE)); 339566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_processors_y","Number of processors in y direction","DMDASetNumProcs",dd->n,&dd->n,NULL,PETSC_DECIDE)); 349566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_processors_z","Number of processors in z direction","DMDASetNumProcs",dd->p,&dd->p,NULL,PETSC_DECIDE)); 35aa219208SBarry Smith /* Handle DMDA refinement */ 369566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_refine_x","Refinement ratio in x direction","DMDASetRefinementFactor",dd->refine_x,&dd->refine_x,NULL,1)); 379566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_refine_y","Refinement ratio in y direction","DMDASetRefinementFactor",dd->refine_y,&dd->refine_y,NULL,1)); 389566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_refine_z","Refinement ratio in z direction","DMDASetRefinementFactor",dd->refine_z,&dd->refine_z,NULL,1)); 3938fb6c91SJed Brown dd->coarsen_x = dd->refine_x; dd->coarsen_y = dd->refine_y; dd->coarsen_z = dd->refine_z; 4047c6ae99SBarry Smith 41397b6216SJed Brown /* Get refinement factors, defaults taken from the coarse DMDA */ 429566063dSJacob Faibussowitsch PetscCall(DMDAGetRefinementFactor(da,&refx[0],&refy[0],&refz[0])); 43397b6216SJed Brown for (i=1; i<maxnlevels; i++) { 44397b6216SJed Brown refx[i] = refx[0]; 45397b6216SJed Brown refy[i] = refy[0]; 46397b6216SJed Brown refz[i] = refz[0]; 47397b6216SJed Brown } 48397b6216SJed Brown n = maxnlevels; 499566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_x","Refinement factor for each level","None",refx,&n,&flg)); 50897f7067SBarry Smith if (flg) { 51897f7067SBarry Smith dd->refine_x = refx[0]; 52897f7067SBarry Smith dd->refine_x_hier_n = n; 539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&dd->refine_x_hier)); 549566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_x_hier,refx,n)); 55897f7067SBarry Smith } 56c73cfb54SMatthew G. Knepley if (dim > 1) { 57397b6216SJed Brown n = maxnlevels; 589566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_y","Refinement factor for each level","None",refy,&n,&flg)); 59897f7067SBarry Smith if (flg) { 60897f7067SBarry Smith dd->refine_y = refy[0]; 61897f7067SBarry Smith dd->refine_y_hier_n = n; 629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&dd->refine_y_hier)); 639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_y_hier,refy,n)); 64897f7067SBarry Smith } 65397b6216SJed Brown } 66c73cfb54SMatthew G. Knepley if (dim > 2) { 67397b6216SJed Brown n = maxnlevels; 689566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_z","Refinement factor for each level","None",refz,&n,&flg)); 69897f7067SBarry Smith if (flg) { 70897f7067SBarry Smith dd->refine_z = refz[0]; 71897f7067SBarry Smith dd->refine_z_hier_n = n; 729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&dd->refine_z_hier)); 739566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_z_hier,refz,n)); 74897f7067SBarry Smith } 75397b6216SJed Brown } 76397b6216SJed Brown 779566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_refine","Uniformly refine DA one or more times","None",refine,&refine,NULL,0)); 78d0609cedSBarry Smith PetscOptionsHeadEnd(); 79235683edSBarry Smith 80e0f5d30fSBarry Smith while (refine--) { 81bff4a2f0SMatthew G. Knepley if (dd->bx == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) { 82*7a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_x,dd->M,&dd->M)); 83e0f5d30fSBarry Smith } else { 84*7a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_x,dd->M-1,&dd->M)); 85*7a3b7fd5SBarry Smith dd->M += 1; 86e0f5d30fSBarry Smith } 87bff4a2f0SMatthew G. Knepley if (dd->by == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) { 88*7a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_y,dd->N,&dd->N)); 89e0f5d30fSBarry Smith } else { 90*7a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_y,dd->N-1,&dd->N)); 91*7a3b7fd5SBarry Smith dd->N += 1; 92e0f5d30fSBarry Smith } 93bff4a2f0SMatthew G. Knepley if (dd->bz == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) { 94*7a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_z,dd->P,&dd->P)); 95e0f5d30fSBarry Smith } else { 96*7a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_z,dd->P-1,&dd->P)); 97*7a3b7fd5SBarry Smith dd->P += 1; 98e0f5d30fSBarry Smith } 99e0f5d30fSBarry Smith da->levelup++; 10085fc4b34SJed Brown if (da->levelup - da->leveldown >= 0) { 10185fc4b34SJed Brown dd->refine_x = refx[da->levelup - da->leveldown]; 10285fc4b34SJed Brown dd->refine_y = refy[da->levelup - da->leveldown]; 10385fc4b34SJed Brown dd->refine_z = refz[da->levelup - da->leveldown]; 10485fc4b34SJed Brown } 10585fc4b34SJed Brown if (da->levelup - da->leveldown >= 1) { 10685fc4b34SJed Brown dd->coarsen_x = refx[da->levelup - da->leveldown - 1]; 10785fc4b34SJed Brown dd->coarsen_y = refy[da->levelup - da->leveldown - 1]; 10885fc4b34SJed Brown dd->coarsen_z = refz[da->levelup - da->leveldown - 1]; 10985fc4b34SJed Brown } 110e0f5d30fSBarry Smith } 11147c6ae99SBarry Smith PetscFunctionReturn(0); 11247c6ae99SBarry Smith } 11347c6ae99SBarry Smith 1147087cfbeSBarry Smith extern PetscErrorCode DMCreateGlobalVector_DA(DM,Vec*); 1157087cfbeSBarry Smith extern PetscErrorCode DMCreateLocalVector_DA(DM,Vec*); 1167087cfbeSBarry Smith extern PetscErrorCode DMGlobalToLocalBegin_DA(DM,Vec,InsertMode,Vec); 1177087cfbeSBarry Smith extern PetscErrorCode DMGlobalToLocalEnd_DA(DM,Vec,InsertMode,Vec); 1187087cfbeSBarry Smith extern PetscErrorCode DMLocalToGlobalBegin_DA(DM,Vec,InsertMode,Vec); 1197087cfbeSBarry Smith extern PetscErrorCode DMLocalToGlobalEnd_DA(DM,Vec,InsertMode,Vec); 120d78e899eSRichard Tran Mills extern PetscErrorCode DMLocalToLocalBegin_DA(DM,Vec,InsertMode,Vec); 121d78e899eSRichard Tran Mills extern PetscErrorCode DMLocalToLocalEnd_DA(DM,Vec,InsertMode,Vec); 122e727c939SJed Brown extern PetscErrorCode DMCreateInterpolation_DA(DM,DM,Mat*,Vec*); 123b412c318SBarry Smith extern PetscErrorCode DMCreateColoring_DA(DM,ISColoringType,ISColoring*); 124b412c318SBarry Smith extern PetscErrorCode DMCreateMatrix_DA(DM,Mat*); 1256636e97aSMatthew G Knepley extern PetscErrorCode DMCreateCoordinateDM_DA(DM,DM*); 1267087cfbeSBarry Smith extern PetscErrorCode DMRefine_DA(DM,MPI_Comm,DM*); 1277087cfbeSBarry Smith extern PetscErrorCode DMCoarsen_DA(DM,MPI_Comm,DM*); 1287087cfbeSBarry Smith extern PetscErrorCode DMRefineHierarchy_DA(DM,PetscInt,DM[]); 1297087cfbeSBarry Smith extern PetscErrorCode DMCoarsenHierarchy_DA(DM,PetscInt,DM[]); 1306dbf9973SLawrence Mitchell extern PetscErrorCode DMCreateInjection_DA(DM,DM,Mat*); 1317087cfbeSBarry Smith extern PetscErrorCode DMView_DA(DM,PetscViewer); 1327087cfbeSBarry Smith extern PetscErrorCode DMSetUp_DA(DM); 1337087cfbeSBarry Smith extern PetscErrorCode DMDestroy_DA(DM); 134e30e807fSPeter Brune extern PetscErrorCode DMCreateDomainDecomposition_DA(DM,PetscInt*,char***,IS**,IS**,DM**); 135e30e807fSPeter Brune extern PetscErrorCode DMCreateDomainDecompositionScatters_DA(DM,PetscInt,DM*,VecScatter**,VecScatter**,VecScatter**); 1367c3cd84eSPatrick Sanan PETSC_INTERN PetscErrorCode DMGetCompatibility_DA(DM,DM,PetscBool*,PetscBool*); 1379a42bb27SBarry Smith 138b859378eSBarry Smith PetscErrorCode DMLoad_DA(DM da,PetscViewer viewer) 139b859378eSBarry Smith { 140060da220SMatthew G. Knepley PetscInt dim,m,n,p,dof,swidth; 141b859378eSBarry Smith DMDAStencilType stencil; 142bff4a2f0SMatthew G. Knepley DMBoundaryType bx,by,bz; 143bc2bf880SBarry Smith PetscBool coors; 144bc2bf880SBarry Smith DM dac; 145bc2bf880SBarry Smith Vec c; 146b859378eSBarry Smith 147b859378eSBarry Smith PetscFunctionBegin; 1489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&dim,1,NULL,PETSC_INT)); 1499566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&m,1,NULL,PETSC_INT)); 1509566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&n,1,NULL,PETSC_INT)); 1519566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&p,1,NULL,PETSC_INT)); 1529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&dof,1,NULL,PETSC_INT)); 1539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&swidth,1,NULL,PETSC_INT)); 1549566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&bx,1,NULL,PETSC_ENUM)); 1559566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&by,1,NULL,PETSC_ENUM)); 1569566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&bz,1,NULL,PETSC_ENUM)); 1579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&stencil,1,NULL,PETSC_ENUM)); 158b859378eSBarry Smith 1599566063dSJacob Faibussowitsch PetscCall(DMSetDimension(da, dim)); 1609566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(da, m,n,p)); 1619566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(da, bx, by, bz)); 1629566063dSJacob Faibussowitsch PetscCall(DMDASetDof(da, dof)); 1639566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(da, stencil)); 1649566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(da, swidth)); 1659566063dSJacob Faibussowitsch PetscCall(DMSetUp(da)); 1669566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&coors,1,NULL,PETSC_ENUM)); 167bc2bf880SBarry Smith if (coors) { 1689566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(da,&dac)); 1699566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac,&c)); 1709566063dSJacob Faibussowitsch PetscCall(VecLoad(c,viewer)); 1719566063dSJacob Faibussowitsch PetscCall(DMSetCoordinates(da,c)); 1729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&c)); 173bc2bf880SBarry Smith } 174b859378eSBarry Smith PetscFunctionReturn(0); 175b859378eSBarry Smith } 176b859378eSBarry Smith 177276c5506SMatthew G. Knepley PetscErrorCode DMCreateSubDM_DA(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 178d724dfffSBarry Smith { 179d724dfffSBarry Smith DM_DA *da = (DM_DA*) dm->data; 180d724dfffSBarry Smith 181d724dfffSBarry Smith PetscFunctionBegin; 182d724dfffSBarry Smith if (subdm) { 183c38c1269SMatthew G. Knepley PetscSF sf; 184c38c1269SMatthew G. Knepley Vec coords; 185c38c1269SMatthew G. Knepley void *ctx; 186c38c1269SMatthew G. Knepley /* Cannot use DMClone since the dof stuff is mixed in. Ugh 1879566063dSJacob Faibussowitsch PetscCall(DMClone(dm, subdm)); */ 1889566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 1899566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1909566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*subdm, sf)); 1919566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1929566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*subdm, ctx)); 1939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 194c38c1269SMatthew G. Knepley if (coords) { 1959566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*subdm, coords)); 196c38c1269SMatthew G. Knepley } else { 1979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1989566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*subdm, coords)); 199c38c1269SMatthew G. Knepley } 200c38c1269SMatthew G. Knepley 2019566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMDA)); 2029566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dm->dim)); 2039566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(*subdm, da->M, da->N, da->P)); 2049566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(*subdm, da->m, da->n, da->p)); 2059566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(*subdm, da->bx, da->by, da->bz)); 2069566063dSJacob Faibussowitsch PetscCall(DMDASetDof(*subdm, numFields)); 2079566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(*subdm, da->stencil_type)); 2089566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(*subdm, da->s)); 2099566063dSJacob Faibussowitsch PetscCall(DMDASetOwnershipRanges(*subdm, da->lx, da->ly, da->lz)); 210d724dfffSBarry Smith } 211d724dfffSBarry Smith if (is) { 212d724dfffSBarry Smith PetscInt *indices, cnt = 0, dof = da->w, i, j; 21338221697SMatthew G. Knepley 2149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(da->Nlocal*numFields/dof, &indices)); 21538221697SMatthew G. Knepley for (i = da->base/dof; i < (da->base+da->Nlocal)/dof; ++i) { 21638221697SMatthew G. Knepley for (j = 0; j < numFields; ++j) { 217d724dfffSBarry Smith indices[cnt++] = dof*i + fields[j]; 218d724dfffSBarry Smith } 219d724dfffSBarry Smith } 22063a3b9bcSJacob Faibussowitsch PetscCheck(cnt == da->Nlocal*numFields/dof,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Count %" PetscInt_FMT " does not equal expected value %" PetscInt_FMT, cnt, da->Nlocal*numFields/dof); 2219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) dm), cnt, indices, PETSC_OWN_POINTER, is)); 222d724dfffSBarry Smith } 223d724dfffSBarry Smith PetscFunctionReturn(0); 224d724dfffSBarry Smith } 225d724dfffSBarry Smith 22616621825SDmitry Karpeev PetscErrorCode DMCreateFieldDecomposition_DA(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 2271c3fb106SBarry Smith { 2281c3fb106SBarry Smith PetscInt i; 2291c3fb106SBarry Smith DM_DA *dd = (DM_DA*)dm->data; 2301c3fb106SBarry Smith PetscInt dof = dd->w; 2311c3fb106SBarry Smith 2321c3fb106SBarry Smith PetscFunctionBegin; 233731c8d9eSDmitry Karpeev if (len) *len = dof; 2341c3fb106SBarry Smith if (islist) { 2351c3fb106SBarry Smith Vec v; 2361c3fb106SBarry Smith PetscInt rstart,n; 2371c3fb106SBarry Smith 2389566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm,&v)); 2399566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(v,&rstart,NULL)); 2409566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v,&n)); 2419566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm,&v)); 2429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof,islist)); 2431c3fb106SBarry Smith for (i=0; i<dof; i++) { 2449566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)dm),n/dof,rstart+i,dof,&(*islist)[i])); 2451c3fb106SBarry Smith } 2461c3fb106SBarry Smith } 2471c3fb106SBarry Smith if (namelist) { 2489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof, namelist)); 2491c3fb106SBarry Smith if (dd->fieldname) { 2501c3fb106SBarry Smith for (i=0; i<dof; i++) { 2519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dd->fieldname[i],&(*namelist)[i])); 2521c3fb106SBarry Smith } 2531c3fb106SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Currently DMDA must have fieldnames"); 2541c3fb106SBarry Smith } 2551c3fb106SBarry Smith if (dmlist) { 2561c3fb106SBarry Smith DM da; 2571c3fb106SBarry Smith 2589566063dSJacob Faibussowitsch PetscCall(DMDACreate(PetscObjectComm((PetscObject)dm), &da)); 2599566063dSJacob Faibussowitsch PetscCall(DMSetDimension(da, dm->dim)); 2609566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(da, dd->M, dd->N, dd->P)); 2619566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(da, dd->m, dd->n, dd->p)); 2629566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(da, dd->bx, dd->by, dd->bz)); 2639566063dSJacob Faibussowitsch PetscCall(DMDASetDof(da, 1)); 2649566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(da, dd->stencil_type)); 2659566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(da, dd->s)); 2669566063dSJacob Faibussowitsch PetscCall(DMSetUp(da)); 2679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof,dmlist)); 2689566063dSJacob Faibussowitsch for (i=0; i<dof-1; i++) PetscCall(PetscObjectReference((PetscObject)da)); 2691c3fb106SBarry Smith for (i=0; i<dof; i++) (*dmlist)[i] = da; 2701c3fb106SBarry Smith } 2711c3fb106SBarry Smith PetscFunctionReturn(0); 2721c3fb106SBarry Smith } 2731c3fb106SBarry Smith 27438221697SMatthew G. Knepley PetscErrorCode DMClone_DA(DM dm, DM *newdm) 27538221697SMatthew G. Knepley { 27638221697SMatthew G. Knepley DM_DA *da = (DM_DA *) dm->data; 27738221697SMatthew G. Knepley 27838221697SMatthew G. Knepley PetscFunctionBegin; 2799566063dSJacob Faibussowitsch PetscCall(DMSetType(*newdm, DMDA)); 2809566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dm->dim)); 2819566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(*newdm, da->M, da->N, da->P)); 2829566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(*newdm, da->m, da->n, da->p)); 2839566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(*newdm, da->bx, da->by, da->bz)); 2849566063dSJacob Faibussowitsch PetscCall(DMDASetDof(*newdm, da->w)); 2859566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(*newdm, da->stencil_type)); 2869566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(*newdm, da->s)); 2879566063dSJacob Faibussowitsch PetscCall(DMDASetOwnershipRanges(*newdm, da->lx, da->ly, da->lz)); 2889566063dSJacob Faibussowitsch PetscCall(DMSetUp(*newdm)); 28938221697SMatthew G. Knepley PetscFunctionReturn(0); 29038221697SMatthew G. Knepley } 29138221697SMatthew G. Knepley 2924a7a4c06SLawrence Mitchell static PetscErrorCode DMHasCreateInjection_DA(DM dm, PetscBool *flg) 2934a7a4c06SLawrence Mitchell { 2944a7a4c06SLawrence Mitchell DM_DA *da = (DM_DA *)dm->data; 2954a7a4c06SLawrence Mitchell 2964a7a4c06SLawrence Mitchell PetscFunctionBegin; 2974a7a4c06SLawrence Mitchell PetscValidHeaderSpecific(dm,DM_CLASSID,1); 298534a8f05SLisandro Dalcin PetscValidBoolPointer(flg,2); 299131f56ebSLawrence Mitchell *flg = da->interptype == DMDA_Q1 ? PETSC_TRUE : PETSC_FALSE; 3004a7a4c06SLawrence Mitchell PetscFunctionReturn(0); 3014a7a4c06SLawrence Mitchell } 3024a7a4c06SLawrence Mitchell 303793f3fe5SMatthew G. Knepley static PetscErrorCode DMGetDimPoints_DA(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 304793f3fe5SMatthew G. Knepley { 305793f3fe5SMatthew G. Knepley PetscFunctionBegin; 3069566063dSJacob Faibussowitsch PetscCall(DMDAGetDepthStratum(dm, dim, pStart, pEnd)); 307793f3fe5SMatthew G. Knepley PetscFunctionReturn(0); 308793f3fe5SMatthew G. Knepley } 309793f3fe5SMatthew G. Knepley 310502a2867SDave May static PetscErrorCode DMGetNeighbors_DA(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 311502a2867SDave May { 312502a2867SDave May PetscInt dim; 313502a2867SDave May DMDAStencilType st; 314502a2867SDave May 315502a2867SDave May PetscFunctionBegin; 3169566063dSJacob Faibussowitsch PetscCall(DMDAGetNeighbors(dm,ranks)); 3179566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(dm,&dim,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,&st)); 318502a2867SDave May 319502a2867SDave May switch (dim) { 320502a2867SDave May case 1: 321502a2867SDave May *nranks = 3; 322d2ebda5dSSatish Balay /* if (st == DMDA_STENCIL_STAR) { *nranks = 3; } */ 323502a2867SDave May break; 324502a2867SDave May case 2: 325502a2867SDave May *nranks = 9; 326d2ebda5dSSatish Balay /* if (st == DMDA_STENCIL_STAR) { *nranks = 5; } */ 327502a2867SDave May break; 328502a2867SDave May case 3: 329502a2867SDave May *nranks = 27; 330d2ebda5dSSatish Balay /* if (st == DMDA_STENCIL_STAR) { *nranks = 7; } */ 331502a2867SDave May break; 332502a2867SDave May default: 333502a2867SDave May break; 334502a2867SDave May } 335502a2867SDave May PetscFunctionReturn(0); 336502a2867SDave May } 337502a2867SDave May 3383efe6655SBarry Smith /*MC 3393efe6655SBarry Smith DMDA = "da" - A DM object that is used to manage data for a structured grid in 1, 2, or 3 dimensions. 3403efe6655SBarry Smith In the global representation of the vector each process stores a non-overlapping rectangular (or slab in 3d) portion of the grid points. 3413efe6655SBarry Smith In the local representation these rectangular regions (slabs) are extended in all directions by a stencil width. 3423efe6655SBarry Smith 3433efe6655SBarry Smith The vectors can be thought of as either cell centered or vertex centered on the mesh. But some variables cannot be cell centered and others 3443bd220d7SPatrick Sanan vertex centered; see the documentation for DMSTAG, a similar DM implementation which supports these staggered grids. 3453efe6655SBarry Smith 3463efe6655SBarry Smith Level: intermediate 3473efe6655SBarry Smith 348db781477SPatrick Sanan .seealso: `DMType`, `DMCOMPOSITE`, `DMSTAG`, `DMDACreate()`, `DMCreate()`, `DMSetType()` 3493efe6655SBarry Smith M*/ 3503efe6655SBarry Smith 35105264a50SDave May extern PetscErrorCode DMLocatePoints_DA_Regular(DM,Vec,DMPointLocationType,PetscSF); 3528135c375SStefano Zampini PETSC_INTERN PetscErrorCode DMSetUpGLVisViewer_DMDA(PetscObject,PetscViewer); 3531c3fb106SBarry Smith 3548cc058d9SJed Brown PETSC_EXTERN PetscErrorCode DMCreate_DA(DM da) 35547c6ae99SBarry Smith { 35647c6ae99SBarry Smith DM_DA *dd; 35747c6ae99SBarry Smith 35847c6ae99SBarry Smith PetscFunctionBegin; 359a4121054SBarry Smith PetscValidPointer(da,1); 3609566063dSJacob Faibussowitsch PetscCall(PetscNewLog(da,&dd)); 361a4121054SBarry Smith da->data = dd; 36247c6ae99SBarry Smith 363c73cfb54SMatthew G. Knepley da->dim = -1; 364aa219208SBarry Smith dd->interptype = DMDA_Q1; 36547c6ae99SBarry Smith dd->refine_x = 2; 36647c6ae99SBarry Smith dd->refine_y = 2; 36747c6ae99SBarry Smith dd->refine_z = 2; 36881c108dcSJed Brown dd->coarsen_x = 2; 36981c108dcSJed Brown dd->coarsen_y = 2; 37081c108dcSJed Brown dd->coarsen_z = 2; 3710298fd71SBarry Smith dd->fieldname = NULL; 37247c6ae99SBarry Smith dd->nlocal = -1; 37347c6ae99SBarry Smith dd->Nlocal = -1; 37447c6ae99SBarry Smith dd->M = -1; 37547c6ae99SBarry Smith dd->N = -1; 37647c6ae99SBarry Smith dd->P = -1; 37747c6ae99SBarry Smith dd->m = -1; 37847c6ae99SBarry Smith dd->n = -1; 37947c6ae99SBarry Smith dd->p = -1; 38047c6ae99SBarry Smith dd->w = -1; 38147c6ae99SBarry Smith dd->s = -1; 3828865f1eaSKarl Rupp 38347c6ae99SBarry Smith dd->xs = -1; dd->xe = -1; dd->ys = -1; dd->ye = -1; dd->zs = -1; dd->ze = -1; 38447c6ae99SBarry Smith dd->Xs = -1; dd->Xe = -1; dd->Ys = -1; dd->Ye = -1; dd->Zs = -1; dd->Ze = -1; 38547c6ae99SBarry Smith 3863e7870d2SPeter Brune dd->Nsub = 1; 3877ddda789SPeter Brune dd->xol = 0; 3887ddda789SPeter Brune dd->yol = 0; 3897ddda789SPeter Brune dd->zol = 0; 390d886c4f4SPeter Brune dd->xo = 0; 391d886c4f4SPeter Brune dd->yo = 0; 392d886c4f4SPeter Brune dd->zo = 0; 393e30e807fSPeter Brune dd->Mo = -1; 394e30e807fSPeter Brune dd->No = -1; 395e30e807fSPeter Brune dd->Po = -1; 39688661749SPeter Brune 3970298fd71SBarry Smith dd->gtol = NULL; 3980298fd71SBarry Smith dd->ltol = NULL; 3990298fd71SBarry Smith dd->ao = NULL; 4009db3d8bcSStefano Zampini PetscStrallocpy(AOBASIC,(char**)&dd->aotype); 40147c6ae99SBarry Smith dd->base = -1; 402bff4a2f0SMatthew G. Knepley dd->bx = DM_BOUNDARY_NONE; 403bff4a2f0SMatthew G. Knepley dd->by = DM_BOUNDARY_NONE; 404bff4a2f0SMatthew G. Knepley dd->bz = DM_BOUNDARY_NONE; 405aa219208SBarry Smith dd->stencil_type = DMDA_STENCIL_BOX; 406aa219208SBarry Smith dd->interptype = DMDA_Q1; 4070298fd71SBarry Smith dd->lx = NULL; 4080298fd71SBarry Smith dd->ly = NULL; 4090298fd71SBarry Smith dd->lz = NULL; 41047c6ae99SBarry Smith 411454e267fSLisandro Dalcin dd->elementtype = DMDA_ELEMENT_Q1; 412454e267fSLisandro Dalcin 413a4121054SBarry Smith da->ops->globaltolocalbegin = DMGlobalToLocalBegin_DA; 414a4121054SBarry Smith da->ops->globaltolocalend = DMGlobalToLocalEnd_DA; 415a4121054SBarry Smith da->ops->localtoglobalbegin = DMLocalToGlobalBegin_DA; 416a4121054SBarry Smith da->ops->localtoglobalend = DMLocalToGlobalEnd_DA; 417d78e899eSRichard Tran Mills da->ops->localtolocalbegin = DMLocalToLocalBegin_DA; 418d78e899eSRichard Tran Mills da->ops->localtolocalend = DMLocalToLocalEnd_DA; 419a4121054SBarry Smith da->ops->createglobalvector = DMCreateGlobalVector_DA; 420a4121054SBarry Smith da->ops->createlocalvector = DMCreateLocalVector_DA; 42125296bd5SBarry Smith da->ops->createinterpolation = DMCreateInterpolation_DA; 422e727c939SJed Brown da->ops->getcoloring = DMCreateColoring_DA; 42325296bd5SBarry Smith da->ops->creatematrix = DMCreateMatrix_DA; 424a4121054SBarry Smith da->ops->refine = DMRefine_DA; 425a4121054SBarry Smith da->ops->coarsen = DMCoarsen_DA; 426a4121054SBarry Smith da->ops->refinehierarchy = DMRefineHierarchy_DA; 427a4121054SBarry Smith da->ops->coarsenhierarchy = DMCoarsenHierarchy_DA; 4285a84ad33SLisandro Dalcin da->ops->createinjection = DMCreateInjection_DA; 4294a7a4c06SLawrence Mitchell da->ops->hascreateinjection = DMHasCreateInjection_DA; 430a4121054SBarry Smith da->ops->destroy = DMDestroy_DA; 431ea78f98cSLisandro Dalcin da->ops->view = NULL; 432a4121054SBarry Smith da->ops->setfromoptions = DMSetFromOptions_DA; 433a4121054SBarry Smith da->ops->setup = DMSetUp_DA; 43438221697SMatthew G. Knepley da->ops->clone = DMClone_DA; 435b859378eSBarry Smith da->ops->load = DMLoad_DA; 4366636e97aSMatthew G Knepley da->ops->createcoordinatedm = DMCreateCoordinateDM_DA; 437d724dfffSBarry Smith da->ops->createsubdm = DMCreateSubDM_DA; 43816621825SDmitry Karpeev da->ops->createfielddecomposition = DMCreateFieldDecomposition_DA; 439e30e807fSPeter Brune da->ops->createdomaindecomposition = DMCreateDomainDecomposition_DA; 440e30e807fSPeter Brune da->ops->createddscatters = DMCreateDomainDecompositionScatters_DA; 441793f3fe5SMatthew G. Knepley da->ops->getdimpoints = DMGetDimPoints_DA; 442502a2867SDave May da->ops->getneighbors = DMGetNeighbors_DA; 44305264a50SDave May da->ops->locatepoints = DMLocatePoints_DA_Regular; 4447c3cd84eSPatrick Sanan da->ops->getcompatibility = DMGetCompatibility_DA; 4459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)da,"DMSetUpGLVisViewer_C",DMSetUpGLVisViewer_DMDA)); 446a4121054SBarry Smith PetscFunctionReturn(0); 447a4121054SBarry Smith } 44847c6ae99SBarry Smith 449a4121054SBarry Smith /*@ 450a4121054SBarry Smith DMDACreate - Creates a DMDA object. 451a4121054SBarry Smith 4525edebc4bSPatrick Sanan Collective 453a4121054SBarry Smith 454a4121054SBarry Smith Input Parameter: 455a4121054SBarry Smith . comm - The communicator for the DMDA object 456a4121054SBarry Smith 457a4121054SBarry Smith Output Parameter: 458a4121054SBarry Smith . da - The DMDA object 459a4121054SBarry Smith 460e0f5d30fSBarry Smith Level: advanced 461e0f5d30fSBarry Smith 4625edebc4bSPatrick Sanan Developers Note: 4635edebc4bSPatrick Sanan Since there exists DMDACreate1/2/3d() should this routine even exist? 464a4121054SBarry Smith 465db781477SPatrick Sanan .seealso: `DMDASetSizes()`, `DMClone()`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()` 466a4121054SBarry Smith @*/ 4677087cfbeSBarry Smith PetscErrorCode DMDACreate(MPI_Comm comm, DM *da) 468a4121054SBarry Smith { 469a4121054SBarry Smith PetscFunctionBegin; 470a4121054SBarry Smith PetscValidPointer(da,2); 4719566063dSJacob Faibussowitsch PetscCall(DMCreate(comm,da)); 4729566063dSJacob Faibussowitsch PetscCall(DMSetType(*da,DMDA)); 47347c6ae99SBarry Smith PetscFunctionReturn(0); 47447c6ae99SBarry Smith } 475